BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3145
(396 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345492254|ref|XP_001602245.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Nasonia
vitripennis]
Length = 787
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/239 (61%), Positives = 184/239 (76%), Gaps = 19/239 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DHTM+FV TK++AH +HI+LGLLG+K GELHGNL+Q
Sbjct: 376 IRIRKEREGDREAILAALICRTFHDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQ 435
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+LRKFKDEE DVL+ATDVAARGLDI GVKTVIN+ MP +L+HYIHRVGRTARAG+
Sbjct: 436 PQRLENLRKFKDEEIDVLLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGR 495
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GGVSVS+AGE +R LVK+VIK AKNPVK+RIIPP +I++KY K+
Sbjct: 496 GGVSVSLAGEQERSLVKEVIKQAKNPVKNRIIPP----------------DIIEKYNKKL 539
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++IE +V+ IL EE+ DR + K + Q ++AE MLKE + R WFQTKKER + K
Sbjct: 540 QSIEEDVENILEEERQDREIAKIENQANRAENMLKESDSKDQ---RSWFQTKKERQSEK 595
>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
Length = 740
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 182/235 (77%), Gaps = 19/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAALVCRTF DHTM+F+ TK++AH +HILLGLLG+K GELHGNLTQ
Sbjct: 374 IRIRKEREGDREAILAALVCRTFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQ 433
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+LRKFKDEE D+L+ATDVAARGLDI GVKTVIN+ MP +L+HYIHRVGRTARAG+
Sbjct: 434 PQRLENLRKFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGR 493
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GGVSVS+AGE +R LVK++IK AKNPVK+RII P +I++KY K+
Sbjct: 494 GGVSVSLAGEQERTLVKKIIKQAKNPVKNRIIAP----------------DIIEKYNKKL 537
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E++E +VQKIL EEK ++ L K + + ++ EK+LK + + R WFQ+KKER
Sbjct: 538 ESLESDVQKILQEEKSEKELAKVENEANRIEKILKVEDGKEQ---RSWFQSKKER 589
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 36/83 (43%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTIEDD+EVP+YS++SD+E +
Sbjct: 6 DLIKTIEDDQEVPDYSENSDEE------------------------------------DD 29
Query: 64 YQPKKFKTKKITDFDNDFSFVSS 86
+QP+K K K+ DFD F F S+
Sbjct: 30 FQPRKQKKKENKDFDKGFQFTSA 52
>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
Length = 734
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 181/235 (77%), Gaps = 19/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DH M+FV TK++AH +HILLGLLG+K GELHGNLTQ
Sbjct: 378 IRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQ 437
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L++FKDE ++LIATDVAARGLDI GVKTVIN+ MP +L+HYIHRVGRTARAG+
Sbjct: 438 PQRLENLQEFKDEIINILIATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGR 497
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK+VIK AKNPVK+RIIPP +I++KY K+
Sbjct: 498 VGVSVSLAGEQERSLVKEVIKRAKNPVKNRIIPP----------------DIIEKYNKKL 541
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++E +V+KIL EEK +R L K + Q ++AE +LK+ + E R WFQ+KKER
Sbjct: 542 QSLEIDVEKILQEEKSERELAKIENQANRAENLLKD---VEERNHRSWFQSKKER 593
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTIEDD+E+ +YS+ SD+E +
Sbjct: 6 DLIKTIEDDQEITDYSEKSDEE------------------------------------DD 29
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP+K K K+ DFD++F F++++ EYN+DT
Sbjct: 30 YQPRKQKKKESKDFDSNFQFINNVAEYNQDT 60
>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
Length = 790
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/235 (60%), Positives = 179/235 (76%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 381 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 440
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 441 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 500
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ VK+RIIPP EI+DKYR K+
Sbjct: 501 AGISVSLAGEKERKIVKDIIKNAESSVKNRIIPP----------------EIIDKYRNKL 544
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R L K ++Q+SK E+ L +P N R WFQTK++R
Sbjct: 545 TALEPEIQNILDEEQAERQLAKTEQQLSKTERKLL-GQP---NERRTWFQTKQQR 595
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 MDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Acyrthosiphon pisum]
Length = 771
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 182/262 (69%), Gaps = 26/262 (9%)
Query: 112 SMTSFLFLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMH 171
S T F LR + R+R+ DR A LAALVCRTF+DHTMIFV TK +AH +
Sbjct: 375 SNTDVAFNLRQEFV------RLRQGKEQDRDATLAALVCRTFRDHTMIFVRTKADAHRVK 428
Query: 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM 231
ILLGL G+KAGELHGNL+QP RLE+LR+FKDEE D+LIATDVAARGLDIRGVK VINY M
Sbjct: 429 ILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDLLIATDVAARGLDIRGVKAVINYTM 488
Query: 232 PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKT 291
P ++EHYIHRVGRTARAG+ GVSVS+A E DRK++K+VI+ AKNPVK+R+IP
Sbjct: 489 PPTVEHYIHRVGRTARAGRSGVSVSIASEQDRKVLKEVIRKAKNPVKNRVIP-------- 540
Query: 292 PSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPL- 350
EI+DKY+ +V+++ EV+ I+TEE +R +N+ +E K EKM K
Sbjct: 541 --------IEILDKYKERVDSLRNEVKCIMTEEYEERQMNRTEEFAEKTEKMAKTSIGTL 592
Query: 351 ---HENPPREWFQTKKERAAIK 369
+ R+WFQT+KER K
Sbjct: 593 IKKKDEKKRDWFQTQKERGEAK 614
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT-EIVVAYCWSKGTFQSN 110
+QPKK KTK T FD++F F++ EYN DT + + Y KGT +++
Sbjct: 31 HQPKKHKTKGDTYFDDEFKFLNMASEYNHDTWDDLQKYIKRKGTNRTD 78
>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
Length = 725
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 135/215 (62%), Positives = 170/215 (79%), Gaps = 16/215 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAALVCRTF DH M+FV TK++AH +HILLGLLG+K GELHGNLTQ
Sbjct: 382 IRIRKEREGDREAILAALVCRTFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQ 441
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+LRKFKDEE D+L+ATDVAARGLDI GVKTVIN+ MP +L+HYIHRVGRTARAG+
Sbjct: 442 PQRLENLRKFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGR 501
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GGVSVS+AGE +R LVK+VIK AKN VK+RIIPP +I++KY K+
Sbjct: 502 GGVSVSLAGEQERSLVKEVIKQAKNQVKNRIIPP----------------DIIEKYNKKL 545
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK 345
+++E +V+KIL EEK ++ L K + + ++ EK+LK
Sbjct: 546 QSLESDVEKILQEEKSEKELAKVENEANRVEKLLK 580
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 36/83 (43%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTIEDD+E+P+YS++SD+E +
Sbjct: 7 DLIKTIEDDQEMPDYSENSDEE------------------------------------DD 30
Query: 64 YQPKKFKTKKITDFDNDFSFVSS 86
YQP+K K K+ DFD+DF F ++
Sbjct: 31 YQPRKQKKKESKDFDSDFQFTAA 53
>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
Length = 641
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
Length = 784
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 177/235 (75%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ VK+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESSVKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R L K ++Q+SK E+ L N R WFQTK++R
Sbjct: 544 TALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLG----QPNERRTWFQTKQQR 594
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 MDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
Length = 787
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 177/235 (75%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ VK+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESSVKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R L K ++Q+SK E+ L N R WFQTK++R
Sbjct: 544 TALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLG----QPNERRTWFQTKQQR 594
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
Length = 782
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
Length = 782
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
Length = 782
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
Length = 782
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
Length = 782
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/235 (58%), Positives = 177/235 (75%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E E+Q IL EE+ +R L K ++Q+SK E+ L N R WFQTKK+R
Sbjct: 544 TSLEPEIQNILEEEQAERQLAKTEQQLSKTERKLLG----QSNERRGWFQTKKQR 594
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
Length = 782
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 180/239 (75%), Gaps = 20/239 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLG++AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRNKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++E E+Q IL EE+ +R L K ++Q+SK E+ L + N R WFQTK++R A K
Sbjct: 544 TSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQT----NERRGWFQTKQQREAEK 598
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
Length = 792
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 177/235 (75%), Gaps = 19/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLL ++AGELHGNLTQ
Sbjct: 382 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQ 441
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 442 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 501
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ VK+RIIPP EI++KYR K+
Sbjct: 502 AGISVSLAGEKERKIVKDIIKNAESSVKNRIIPP----------------EIIEKYRNKL 545
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R + K ++Q+SK E+ L ++ R WFQTK++R
Sbjct: 546 TALEPEIQNILDEEQAERQIAKTEQQLSKTERKLLGQQG---QDRRTWFQTKQQR 597
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 MDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FVSS++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVSSVKEYNQDT 62
>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
Length = 879
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/245 (57%), Positives = 184/245 (75%), Gaps = 17/245 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R+ DR+ +LAALVCRTF DH M+FV TKR AH + ILLGLLG+KAGELHG+LTQ
Sbjct: 431 IRVREGREADREPILAALVCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQ 490
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FKDE+ DVL+ATDVAARGLDI GV TVIN+ MP +LEHYIHRVGRTARAG+
Sbjct: 491 AQRLESLKQFKDEQIDVLVATDVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGR 550
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE++R++VK ++KNA NPVK+RIIP EI+DKYRAKV
Sbjct: 551 AGVSVSLAGELERRIVKDIVKNAVNPVKNRIIP----------------GEIIDKYRAKV 594
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLH-ENPPREWFQTKKERAAIK 369
A+E E+ K+L EE+ +++L +A++Q++ E+ LK P + PPREWFQ+++E+ K
Sbjct: 595 AALESEIDKVLAEERAEKMLRQAEQQLTSTERKLKGIAPHKTDGPPREWFQSQREKREEK 654
Query: 370 TSQAG 374
+G
Sbjct: 655 DRLSG 659
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTI DD+EV +YS++SD+EVE
Sbjct: 37 DLVKTINDDDEVEDYSEESDQEVE------------------------------------ 60
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + +K DFD F FVSS++EYN DT
Sbjct: 61 YQPTKMRAQKKGDFDGAFQFVSSVKEYNHDT 91
>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
Length = 807
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/246 (58%), Positives = 181/246 (73%), Gaps = 25/246 (10%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+ DR+ +LAAL+CRTF DH M+FV TK+ AH + ILLGLLG+KAGELHG+LTQ
Sbjct: 409 IRIRESRDADREPILAALICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FKDE+ DVL+ATDVAARGLDI GVKTVIN+ MP ++EHYIHRVGRTARAGK
Sbjct: 469 SQRLESLKQFKDEQIDVLVATDVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGK 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE++RK+VK +IKNA NPVK+RIIP EIV+KYR KV
Sbjct: 529 AGVSVSLAGELERKIVKDIIKNAVNPVKNRIIP----------------NEIVEKYRKKV 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT------KKE 364
+A+E E++ +L EE ++LL + ++Q+SK E L K + P REWFQ +KE
Sbjct: 573 QALEEEIENVLQEEHAEKLLRQTEQQLSKTENKL---KGISNGPSREWFQNSHERHQEKE 629
Query: 365 RAAIKT 370
R +IKT
Sbjct: 630 RLSIKT 635
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTI +D+EV N S++SD EVE
Sbjct: 28 DLIKTINEDDEVENLSEESDVEVE------------------------------------ 51
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K K +K DFD+ F FVSS+ EYN DT
Sbjct: 52 YQPSKLKKQKQGDFDSGFKFVSSVSEYNHDT 82
>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
Length = 694
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 185/235 (78%), Gaps = 19/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAALVCRTF DHTMIFV TK++AH +HILLGLLG+K GELHGNLTQ
Sbjct: 337 IRIRKEREGDREAILAALVCRTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQ 396
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L+KFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +L+HYIHRVGRTARAG+
Sbjct: 397 PQRLENLQKFKEEEIDILLATDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGR 456
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GGVSVS+AGE +R LVK++IK AKNP+K+RIIPP +I++KY K+
Sbjct: 457 GGVSVSLAGEQERFLVKEIIKQAKNPIKNRIIPP----------------DIIEKYNKKL 500
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++E +V++IL EEK+D+ L K + Q ++ EK+LK++ + R WFQTKKER
Sbjct: 501 QSLEVDVERILQEEKNDKELAKIENQANRVEKLLKDEDTKDQ---RSWFQTKKER 552
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKD 93
++QP+K + K DFD++F F+SS +EYN+D
Sbjct: 18 DFQPRKQRKKGSKDFDSNFQFISSTDEYNQD 48
>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108873494|gb|EAT37719.1| AAEL010317-PA [Aedes aegypti]
Length = 804
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/235 (59%), Positives = 178/235 (75%), Gaps = 19/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+ DR+ LLAAL+CRTF DH M+FV TK+ AH + ILLGLLG+K+GELHG+LTQ
Sbjct: 404 IRIREGREADREPLLAALICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQ 463
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FKDE+ DVLIATDVAARGLDI GVKTVIN+ MP ++EHYIHRVGRTARAGK
Sbjct: 464 SQRLESLKQFKDEQVDVLIATDVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGK 523
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE++RK+VK +IKNA +PVK+RIIP EIVDKYR KV
Sbjct: 524 AGVSVSLAGELERKIVKDIIKNAVSPVKNRIIP----------------TEIVDKYRKKV 567
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E++K+L EE+ +++L + ++Q+++ E+ L K + P REWFQT ER
Sbjct: 568 LALEEEIEKVLCEERAEKMLLQTEQQLNRTERKL---KGVVSGPSREWFQTHHER 619
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 43/91 (47%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTI +DEEV + S++SD EVE
Sbjct: 24 DLIKTINEDEEVEDLSEESDVEVE------------------------------------ 47
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K K +K DFDNDF FVSS+ EYN DT
Sbjct: 48 YQPTKLKNQKKGDFDNDFKFVSSVSEYNHDT 78
>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
Length = 592
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/235 (55%), Positives = 175/235 (74%), Gaps = 19/235 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+L ALVCRTF++H M+FV TK H +H+ LGLLGI+ GELHGNL+QP
Sbjct: 239 RIRPNHEGDREAILCALVCRTFRNHCMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQP 298
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LRKFK+E+ D+L++TDVAARGLDI GV+TVINY MP ++E YIHRVGRTARAG+
Sbjct: 299 QRLEALRKFKEEDIDILVSTDVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRS 358
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
GVSVS+AGE +RK+VK+++K A NPVK R+IP EI++KY+ K+
Sbjct: 359 GVSVSLAGEGERKVVKEIVKRANNPVKSRLIP----------------NEILEKYKKKLA 402
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEK-KPLHENPPREWFQTKKER 365
I+ +V+ I+TEEK + L+ + Q+++AEKM+K K +P P R+WFQT +ER
Sbjct: 403 LIDPDVESIITEEKSESQLSAMENQINRAEKMVKVKGEPAA--PKRQWFQTHQER 455
>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
Length = 809
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/249 (57%), Positives = 182/249 (73%), Gaps = 20/249 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+ DR+A+LAALVCRTF DH M+FV TKR AH + ILLGLLG+K GELHG+LTQ
Sbjct: 397 IRIREGREADREAILAALVCRTFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHGDLTQ 456
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FKDE+ D+LIATDVAARGLDI VKTVIN+ MP +LEHYIHRVGRTARAGK
Sbjct: 457 AQRLESLKEFKDEQVDILIATDVAARGLDISTVKTVINFVMPATLEHYIHRVGRTARAGK 516
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +RK+VK+++KNA + VK+RIIP +I++KYR KV
Sbjct: 517 AGVSVSLAGEQERKIVKEIVKNAVSSVKNRIIP----------------LDIIEKYRNKV 560
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML--KEKKPLHEN--PPREWFQTKKERA 366
A+E E+ ++L EE+ ++LL + ++Q++ AE+ L K ++ PPREWFQT+ ER
Sbjct: 561 AALEPEIDRVLAEERAEKLLRQTEQQLTSAERKLLGNAGKAAKQDVPPPREWFQTQHERR 620
Query: 367 AIKTSQAGE 375
K AGE
Sbjct: 621 EEKNRLAGE 629
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 36/93 (38%)
Query: 2 QVDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFS 61
Q+D +KT+EDD EV + S++S+ E+E
Sbjct: 5 QLDFMKTLEDDAEVEDLSEESETEIE---------------------------------- 30
Query: 62 SEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K K +K+TDFD F FVSS++EYN DT
Sbjct: 31 --YQPTKQKNQKLTDFDGGFQFVSSVKEYNHDT 61
>gi|449486366|ref|XP_002191498.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Taeniopygia guttata]
Length = 757
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 179/245 (73%), Gaps = 18/245 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++ AL+ RTF+DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 401 IRIRPNREGDREAIVTALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQ 460
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESLR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAGK
Sbjct: 461 TQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGK 520
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 521 AGRSVSLVGEEERKMLKEIVKTAKTPVKARILP----------------QDVILKFREKI 564
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK--EKKPLHENPPREWFQTKKERAAI 368
E +E ++ +L E+ +R + +++ Q++KA+K L+ +K+ E+ R WFQT++ER
Sbjct: 565 ENLEKDIYAVLCLEREEREMQQSEAQINKAKKQLETGKKEAGSESLERSWFQTREERKKE 624
Query: 369 KTSQA 373
K ++A
Sbjct: 625 KLAKA 629
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 179/244 (73%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 466 IRIRPNREGDREAIVAALLTRTFSDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 525
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 526 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 585
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K+AK PVK RI+P +++ K+R K+
Sbjct: 586 AGRSVSLVGEEERKMLKEIVKSAKAPVKARILPQ----------------DVILKFRDKI 629
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ ++ P R WFQTK+ER K
Sbjct: 630 EKMEKDVYAVLQLEAEEKEIQQSEAQINTAKRLLEKGKEAQNQEPERSWFQTKEERKKEK 689
Query: 370 TSQA 373
++A
Sbjct: 690 IAKA 693
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 179/245 (73%), Gaps = 19/245 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 408 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 467
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 468 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 527
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 528 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 571
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK--PLHENPPREWFQTKKERAAI 368
E +E +V +L E ++ L +++ Q++ A+++L++ K P HE P R WFQTK+ER
Sbjct: 572 EKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGKEAPNHE-PERSWFQTKEERKKE 630
Query: 369 KTSQA 373
K ++A
Sbjct: 631 KIAKA 635
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 177/242 (73%), Gaps = 19/242 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 458 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 517
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 518 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 577
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 578 AGRSVSLVGEEERKMLKEIVKTAKAPVKARILP----------------QDVILKFRDKI 621
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK--PLHENPPREWFQTKKERAAI 368
E +E +V +L E ++ + +++ Q++ A+++L++ K P HE P R WFQTK+ER
Sbjct: 622 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEGPNHE-PERSWFQTKEERKKE 680
Query: 369 KT 370
KT
Sbjct: 681 KT 682
>gi|417412705|gb|JAA52724.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 788
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 432 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 491
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 492 AQRLEALRRFKDEQIDILVATDVAARGLDIAGVKTVINFTMPNTIKHYVHRVGRTARAGR 551
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 552 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 595
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E +R + +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 596 EKMEKDVYSVLQLEAEEREMQQSEAQINTAKRLLEKGKEAQNHEPERSWFQTKEERKKEK 655
Query: 370 TSQA 373
++A
Sbjct: 656 IAKA 659
>gi|426392064|ref|XP_004062380.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Gorilla
gorilla gorilla]
Length = 575
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 219 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 278
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAGK
Sbjct: 279 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGK 338
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 339 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 382
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 383 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 442
Query: 370 TSQA 373
++A
Sbjct: 443 IAKA 446
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P ++V K+R K+
Sbjct: 529 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVVLKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
Length = 703
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 377 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 436
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 437 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 496
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 497 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 540
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ L +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 541 EKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGKEASNHEPERSWFQTKEERKKEK 600
Query: 370 TSQA 373
++A
Sbjct: 601 IAKA 604
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
mellifera]
Length = 739
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/235 (60%), Positives = 185/235 (78%), Gaps = 18/235 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DH M+FV TK++AH +HILLGLLGIK GELHGNLTQ
Sbjct: 379 IRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQ 438
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L KFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +++HYIHRVGRTARAG+
Sbjct: 439 PQRLENLTKFKNEEIDILLATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGR 498
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK++IKNAKNPVK+RIIP ++I+DKY K+
Sbjct: 499 VGVSVSLAGEQERSLVKEIIKNAKNPVKNRIIP----------------SDIIDKYYKKL 542
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++E +V+KIL EE+++R L K + Q ++AEK+LK + ++N R WFQT+KER
Sbjct: 543 QSLEPDVEKILEEERNERELAKIENQANRAEKLLKNES--NKNIQRTWFQTQKER 595
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTI DD+EVPN+S+DSD E ++
Sbjct: 6 DLIKTIVDDQEVPNFSEDSDIE------------------------------------ND 29
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP+K K ++ DFDN+F F++ + +YNKDT
Sbjct: 30 FQPRKRKKRENKDFDNNFQFLNDVSDYNKDT 60
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + K++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 439 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 498
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 499 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 558
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +R+++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 559 AGRSVSLVGEEERRMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 602
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ ++ P R WFQTK+ER K
Sbjct: 603 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEATNQEPERSWFQTKEERKKEK 662
Query: 370 TSQA 373
++A
Sbjct: 663 IAKA 666
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 411 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 470
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 471 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 530
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 531 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 574
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 575 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 634
Query: 370 TSQA 373
++A
Sbjct: 635 IAKA 638
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 413 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 472
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 473 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 532
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 533 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 576
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 577 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 636
Query: 370 TSQA 373
++A
Sbjct: 637 IAKA 640
>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
jacchus]
Length = 764
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 408 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 467
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 468 MQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 527
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P ++V K+R K+
Sbjct: 528 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVVLKFRDKI 571
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 572 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 631
Query: 370 TSQA 373
++A
Sbjct: 632 IAKA 635
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + K++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 178/243 (73%), Gaps = 17/243 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 564 RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 623
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 624 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 683
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+E
Sbjct: 684 GRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKIE 727
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIKT 370
+E +V +L E ++ L +++ Q++ A+++L K K+ L+ P R WFQTK+ER K
Sbjct: 728 KMEKDVYAVLQLEAEEKELQQSEVQINTAKRLLEKGKEVLNHEPERSWFQTKEERKKEKI 787
Query: 371 SQA 373
++A
Sbjct: 788 AKA 790
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 408 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 467
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 468 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 527
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 528 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 571
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 572 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERNWFQTKEERKKEK 631
Query: 370 TSQA 373
++A
Sbjct: 632 IAKA 635
>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
Length = 1561
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 177/245 (72%), Gaps = 18/245 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 1205 IRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQ 1264
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++ +HY+HRVGRTARAG+
Sbjct: 1265 AQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGR 1324
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K+AK PVK RI+P +++ K+R K+
Sbjct: 1325 AGRSVSLVGEEERKMLKEIVKSAKTPVKARILP----------------QDVILKFREKI 1368
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK--PLHENPPREWFQTKKERAAI 368
E +E +V +L E+ +R + +++ Q++KA+K L+E K + R WFQT++ER
Sbjct: 1369 ENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQETATKGVERSWFQTREERKKE 1428
Query: 369 KTSQA 373
K ++A
Sbjct: 1429 KLAKA 1433
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 407 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 466
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 467 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 526
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 527 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 570
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 571 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERNWFQTKEERKKEK 630
Query: 370 TSQA 373
++A
Sbjct: 631 IAKA 634
>gi|335304982|ref|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Sus
scrofa]
Length = 421
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 65 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 124
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 125 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 184
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 185 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 228
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + K++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 229 EKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEK 288
Query: 370 TSQA 373
++A
Sbjct: 289 IAKA 292
>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Ailuropoda melanoleuca]
Length = 764
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 408 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 467
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 468 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 527
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 528 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 571
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ L +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 572 EKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEKGKEASNHEPERSWFQTKEERKKEK 631
Query: 370 TSQA 373
++A
Sbjct: 632 IAKA 635
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 499
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 500 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 559
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 603
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 604 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 663
Query: 370 TSQA 373
++A
Sbjct: 664 IAKA 667
>gi|402882297|ref|XP_003904684.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Papio anubis]
Length = 711
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 355 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 414
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 415 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 474
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 475 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 518
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 519 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERNWFQTKEERKKEK 578
Query: 370 TSQA 373
++A
Sbjct: 579 IAKA 582
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 499
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 500 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 559
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 603
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 604 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 663
Query: 370 TSQA 373
++A
Sbjct: 664 IAKA 667
>gi|62897793|dbj|BAD96836.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 variant [Homo sapiens]
Length = 408
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 52 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 111
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 112 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGR 171
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 172 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQ----------------DVILKFRDKI 215
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 216 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 275
Query: 370 TSQA 373
++A
Sbjct: 276 IAKA 279
>gi|7020811|dbj|BAA91284.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 50 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 109
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 110 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGR 169
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 170 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQ----------------DVILKFRDKI 213
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 214 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 273
Query: 370 TSQA 373
++A
Sbjct: 274 IAKA 277
>gi|397475811|ref|XP_003809313.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Pan paniscus]
Length = 605
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 213/345 (61%), Gaps = 35/345 (10%)
Query: 37 ACPKANLGW-----YPQTAIVPNLPRLKFSSEYQPKKFK--TKKITDFDNDFSFVSSIEE 89
ACP A W +PQ + + P + EY ++ K + + F +++ +
Sbjct: 159 ACPHAPTLWLLHLPFPQPGAI-SCP-FRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTD 216
Query: 90 YNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLLCFRIRKDTHLDRKALLAALV 149
KD V + SN + FL R + RIR + DR+A++AAL+
Sbjct: 217 EVKDLASVSLKNPVRIFVNSNTDVAPFL---RQEFI------RIRPNREGDREAIVAALL 267
Query: 150 CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLI 209
RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q RLE+LR+FKDE+ D+L+
Sbjct: 268 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 327
Query: 210 ATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+ G SVS+ GE +RK++K++
Sbjct: 328 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 387
Query: 270 IKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+K AK PVK RI+P +++ K+R K+E +E +V +L E ++
Sbjct: 388 VKAAKAPVKARILP----------------QDVILKFRDKIEKMEKDVYAVLQLEAEEKE 431
Query: 330 LNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIKTSQA 373
+ +++ Q++ A+++L K K+ + + P R WFQTK+ER K ++A
Sbjct: 432 MQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKA 476
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 177/245 (72%), Gaps = 19/245 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 408 RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 467
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 468 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 527
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+E
Sbjct: 528 GRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKIE 571
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKML---KEKKPLHENPPREWFQTKKERAAI 368
+E +V +L E ++ L +++ Q++ A+++L K K+ + P R WFQTK+ER
Sbjct: 572 KMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEREKGKEASNHEPERSWFQTKEERKKE 631
Query: 369 KTSQA 373
K ++A
Sbjct: 632 KIAKA 636
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERGWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 173/236 (73%), Gaps = 17/236 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 379 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 438
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 439 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 498
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 499 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 542
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKER 365
E +E +V +L E ++ + K++ Q++ A+++L K K+ + P R WFQTK+ER
Sbjct: 543 EKMEKDVYAVLQLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEER 598
>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 177/235 (75%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLGI+AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRKKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R L K ++Q+SK E+ L N R WFQTK++R
Sbjct: 544 TALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLG----QTNDKRGWFQTKQQR 594
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FV S++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVGSVKEYNQDT 62
>gi|444731361|gb|ELW71716.1| putative ATP-dependent RNA helicase DDX27 [Tupaia chinensis]
Length = 735
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHI+LGL+G++ GELHGNL+Q
Sbjct: 384 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHIVLGLMGLQVGELHGNLSQ 443
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 444 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 503
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 504 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQ----------------DVILKFRDKI 547
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 548 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEARDQEPERSWFQTKEERKKEK 607
Query: 370 TSQA 373
++A
Sbjct: 608 IAKA 611
>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
Length = 785
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 177/235 (75%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+D DR+ +LA+L+CRTF DH M+FV TK++AH +HILLGLLGI+AGELHGNLTQ
Sbjct: 380 IRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL+KFK+E+ DVLIATDVAARGLDI GVKTVIN+ MP + EHYIHRVGRTARAG+
Sbjct: 440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+AGE +RK+VK +IKNA++ +K+RIIPP EI++KYR K+
Sbjct: 500 AGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP----------------EIIEKYRKKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
A+E E+Q IL EE+ +R L K ++Q+SK E+ L N R WFQTK++R
Sbjct: 544 TALEPEIQNILDEEQAERQLAKTEQQLSKTERKLLG----QTNDKRGWFQTKQQR 594
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
+DL+ TIEDD EV N S+DSD EVE
Sbjct: 7 LDLIGTIEDDAEVENLSEDSDAEVE----------------------------------- 31
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
YQP K + KK+T+F+ F FV S++EYN+DT
Sbjct: 32 -YQPTKLRHKKVTEFEKGFEFVGSVKEYNQDT 62
>gi|383864023|ref|XP_003707479.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Megachile
rotundata]
Length = 741
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/232 (61%), Positives = 184/232 (79%), Gaps = 19/232 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAALVCRTF DHTM+FV TK++AH +HILLGLLGIK GELHGNLTQ
Sbjct: 380 IRIRKEREGDREAILAALVCRTFHDHTMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+LRKFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +++HYIHRVGRTARAG+
Sbjct: 440 PQRLENLRKFKNEEIDILLATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK +IKNAKNPVK+RIIPP +I++KY K+
Sbjct: 500 VGVSVSLAGEQERSLVKDIIKNAKNPVKNRIIPP----------------DIIEKYNKKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+++E +V+KIL EE+++R L K + Q ++AEK+LK++ +++ R WFQT+
Sbjct: 544 KSLEPDVEKILEEERNERELAKIENQANRAEKLLKDE---NKSTQRSWFQTQ 592
>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
Length = 776
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 173/242 (71%), Gaps = 17/242 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A++AAL+ RTF+DH M+F TK++AH MHILLGL+G+K GELHGNL+Q
Sbjct: 424 RIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQT 483
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLESLR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAGK
Sbjct: 484 QRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKV 543
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K AK PVK R+IP E++ K+R +E
Sbjct: 544 GRSVSLVGETERKMLKEIVKKAKFPVKARVIP----------------QEVILKFRDLIE 587
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E +V +L EK ++ + ++ Q+S A+K L K + PR WFQT +ER + +
Sbjct: 588 KLEKDVYAVLCLEKEEKEMAHSEAQISSAQKRLT-KSEDEKQLPRTWFQTNEERKKDRMA 646
Query: 372 QA 373
+A
Sbjct: 647 KA 648
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 176/245 (71%), Gaps = 18/245 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 402 IRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQ 461
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++ +HY+HRVGRTARAG+
Sbjct: 462 AQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGR 521
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 522 AGRSVSLVGEEERKMLKEIVKAAKTPVKARILPQ----------------DVILKFREKI 565
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK--PLHENPPREWFQTKKERAAI 368
E +E +V +L E+ +R + +++ Q++KA+K L+E K + R WFQT++ER
Sbjct: 566 ENLEKDVYAVLCLEREEREMQQSEAQINKAKKQLEEGKQEAATKGVERSWFQTREERKKE 625
Query: 369 KTSQA 373
K ++A
Sbjct: 626 KLAKA 630
>gi|432110218|gb|ELK33991.1| Putative ATP-dependent RNA helicase DDX27 [Myotis davidii]
Length = 863
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 173/236 (73%), Gaps = 17/236 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESLR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAGK
Sbjct: 469 TQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGK 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKER 365
E +E +V +L E ++ + +++ Q++ A+++L K K+ + P R WFQTK+ER
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAQNHEPERSWFQTKEER 628
>gi|395752428|ref|XP_003779421.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 2
[Pongo abelii]
Length = 796
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 499
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 500 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 559
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 603
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 604 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERGWFQTKEERKKEK 663
Query: 370 TSQA 373
++A
Sbjct: 664 IAKA 667
>gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Apis florea]
Length = 710
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 185/235 (78%), Gaps = 18/235 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DH M+FV TK++AH +HILLGLLGIK GELHGNLTQ
Sbjct: 379 IRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQ 438
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L KFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +++HYIHRVGRTARAG+
Sbjct: 439 PQRLENLTKFKNEEIDILLATDVAARGLDISGVKTVINFVMPATIQHYIHRVGRTARAGR 498
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK++IKNAKNPVK+RIIP ++I+DKY K+
Sbjct: 499 VGVSVSLAGEQERSLVKEIIKNAKNPVKNRIIP----------------SDIIDKYYKKL 542
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++E +V+KIL EE+++R L K + Q ++AEK+LK + +++ R WFQT+KER
Sbjct: 543 QSLEPDVEKILEEERNERELAKIENQANRAEKLLKNES--NKSIQRTWFQTQKER 595
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTI DD+EVPN+S+DSD E ++
Sbjct: 6 DLIKTIVDDQEVPNFSEDSDTE------------------------------------ND 29
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP+K K K+ DFDN+F F+S I +YNKDT
Sbjct: 30 FQPRKRKKKENKDFDNNFQFLSDISDYNKDT 60
>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
(Silurana) tropicalis]
Length = 760
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 169/242 (69%), Gaps = 16/242 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+ AL+ RTF+DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 406 RIRPNREGDREAVACALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQT 465
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLESLR+FKDE+ D+L+ATDVAARGLDI GVKTVIN MP +++HY+HRVGRTARAGK
Sbjct: 466 QRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKA 525
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K A+ PVK R+IP +++ K+R K+
Sbjct: 526 GRSVSLVGEEERKMLKEIVKKAQAPVKARVIPQ----------------DVISKFREKIT 569
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
E E+ +L EK ++ + ++ Q+S A+K L+ K +P R WFQTK+ER K S
Sbjct: 570 KSEKEIYAVLQLEKEEKEMQMSEAQISVAKKKLQPGKGEESHPERSWFQTKEERRKEKLS 629
Query: 372 QA 373
A
Sbjct: 630 HA 631
>gi|441639369|ref|XP_004090206.1| PREDICTED: probable ATP-dependent RNA helicase DDX27, partial
[Nomascus leucogenys]
Length = 786
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 430 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 489
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 490 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 549
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 550 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 593
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 594 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 653
Query: 370 TSQA 373
++A
Sbjct: 654 IAKA 657
>gi|357617988|gb|EHJ71096.1| putative DEAD box ATP-dependent RNA helicase [Danaus plexippus]
Length = 776
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK+ DR+A+LAALVCRTFKD +IFV TK++AH +H+ LGLLGIK ELHG L QP
Sbjct: 389 RIRKERECDREAILAALVCRTFKDRAVIFVQTKKQAHRLHVALGLLGIKVAELHGALNQP 448
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL+SL++F++E+ DVL+ATDVAARGLDI GVKTV+N+ +P ++EHYIHRVGRTARAG+
Sbjct: 449 QRLDSLKRFREEQVDVLVATDVAARGLDIPGVKTVLNFTLPATIEHYIHRVGRTARAGRA 508
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
GVSVS+AGE +R LVK +++ A+ VK R++P A+IV KYR K+
Sbjct: 509 GVSVSLAGEGERNLVKTIVRRARRAVKSRVLP----------------ADIVAKYRDKLA 552
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK---PLHENPPREWFQTKKER 365
+E E+ IL EE D+ L K ++Q +K E +K +K P+ +WFQT KE+
Sbjct: 553 KLEPEIAAILDEEYADKQLKKMEKQTNKLESAIKNEKTDTPMEAPRQHDWFQTPKEK 609
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 36/88 (40%)
Query: 5 LLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEY 64
L+KTI DDEEV ++S++SD E +Y
Sbjct: 9 LIKTINDDEEVEDFSEESDVE------------------------------------EDY 32
Query: 65 QPKKFKTKKITDFDNDFSFVSSIEEYNK 92
QP K K K+ DFD F FV S++EYNK
Sbjct: 33 QPTKQKVKRQADFDPSFKFVGSVDEYNK 60
>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
Length = 561
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHI LGL+G++ GELHGNL+Q
Sbjct: 205 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHIFLGLMGLQVGELHGNLSQ 264
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 265 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 324
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 325 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 368
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 369 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 428
Query: 370 TSQA 373
++A
Sbjct: 429 IAKA 432
>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 529 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 632
Query: 370 TSQA 373
++A
Sbjct: 633 IAKA 636
>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
Length = 758
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 169/242 (69%), Gaps = 16/242 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+ AL+ RTF+DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 404 RIRPNREGDREAVACALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 463
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN MP +++HY+HRVGRTARAGK
Sbjct: 464 QRLEALRRFKDEQIDILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKA 523
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K A+ PVK R+IP +++ K+R K+
Sbjct: 524 GRSVSLVGEEERKMLKEIVKKAQAPVKARVIPQ----------------DVISKFRDKIT 567
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
E E+ ++ EK +R + ++ Q+S A+K L+++K P R WFQT+ ER K S
Sbjct: 568 KSEKEIYAVMQLEKEEREMQMSEAQISVAKKKLQQEKGGEAQPERSWFQTRDERRKEKLS 627
Query: 372 QA 373
A
Sbjct: 628 HA 629
>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
Length = 796
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 177/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 499
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY HRVGRTARAG+
Sbjct: 500 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGR 559
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 603
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQTK+ER K
Sbjct: 604 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEK 663
Query: 370 TSQA 373
++A
Sbjct: 664 IAKA 667
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 176/243 (72%), Gaps = 17/243 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 361 RIRPNREGDREAVVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 420
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ DVL+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 421 QRLEALRRFKDEQIDVLVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 480
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+E
Sbjct: 481 GRSVSLVGEEERKMLKEIVKTAKAPVKARILP----------------QDVILKFRDKIE 524
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIKT 370
+E +V +L E ++ + ++ Q++ A+++L K K +E P R WFQ+++ER K
Sbjct: 525 KLEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKGKGEANEEPRRSWFQSREERKKEKI 584
Query: 371 SQA 373
++A
Sbjct: 585 AKA 587
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 177/243 (72%), Gaps = 19/243 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 540 IRIRPNREGDREAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 599
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 600 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 659
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K+AK PVK RI+P +++ K+R K+
Sbjct: 660 AGRSVSLVGEEERKMLKEIVKSAKAPVKARILP----------------QDVILKFRGKI 703
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E +E +V +L E ++ + ++ Q++ A+++L++ +E P R WFQ+K+ER K
Sbjct: 704 EKMEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKG---NEEPERTWFQSKEERKKEKI 760
Query: 371 SQA 373
++A
Sbjct: 761 AKA 763
>gi|395506879|ref|XP_003757757.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Sarcophilus
harrisii]
Length = 766
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 176/242 (72%), Gaps = 19/242 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+++AL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 415 RIRPNREGDREAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQA 474
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 475 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 534
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K+AK PVK RI+P +++ K+R K+E
Sbjct: 535 GRSVSLVGEEERKMLKEIVKSAKAPVKARILP----------------QDVILKFRDKIE 578
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E +V +L E ++ + ++ Q++ A+++L++ +E P R WFQ K+ER K +
Sbjct: 579 KMEKDVYAVLRLEAEEKEMQHSEAQINTAKRLLEKG---NEEPERTWFQNKEERKKEKIA 635
Query: 372 QA 373
+A
Sbjct: 636 KA 637
>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
Length = 1657
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 180/234 (76%), Gaps = 20/234 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR+D DR+A+LAALVCRTF++H M+FV TK++AH +HILLGLLG+K GELHGNLTQP
Sbjct: 1327 RIRQDKEGDREAILAALVCRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQP 1386
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L+KFK+ + DVL+ATDVAARGLDI+GV+TVIN+ MP ++EHYIHRVGRTARAG+
Sbjct: 1387 QRLDALQKFKETQIDVLVATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRA 1446
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
GVSVS+AGE +RK+VK V+K AK+PVK R+IPP +I++KY+ K+E
Sbjct: 1447 GVSVSLAGEQERKIVKDVVKKAKHPVKSRVIPP----------------DILEKYKNKLE 1490
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+E ++ +IL EE +R + K + QV+K EK+LK +K R WFQTKK+R
Sbjct: 1491 KLEPQIAQILQEEYEERQVAKVENQVNKVEKLLKGEK----GEARPWFQTKKQR 1540
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
VDL++TI DD+E+ ++S++SD EVE
Sbjct: 976 VDLIRTIGDDDEIEDFSEESDAEVE----------------------------------- 1000
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP K K K+ DFD DF FVSS EEYNKD+
Sbjct: 1001 -FQPTKQKNKRKVDFDTDFQFVSSAEEYNKDS 1031
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 170/232 (73%), Gaps = 17/232 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 499
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 500 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 559
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 603
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQT 361
E +E +V +L E ++ + +++ Q++ A+++L K K+ + + P R WFQT
Sbjct: 604 EKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQT 655
>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
Length = 691
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 180/234 (76%), Gaps = 20/234 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR+D DR+A+LAALVCRTF++H M+FV TK++AH +HILLGLLG+K GELHGNLTQP
Sbjct: 361 RIRQDKEGDREAILAALVCRTFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQP 420
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L+KFK+ + DVL+ATDVAARGLDI+GV+TVIN+ MP ++EHYIHRVGRTARAG+
Sbjct: 421 QRLDALQKFKETQIDVLVATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRA 480
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
GVSVS+AGE +RK+VK V+K AK+PVK R+IPP +I++KY+ K+E
Sbjct: 481 GVSVSLAGEQERKIVKDVVKKAKHPVKSRVIPP----------------DILEKYKNKLE 524
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+E ++ +IL EE +R + K + QV+K EK+LK +K R WFQTKK+R
Sbjct: 525 KLEPQIAQILQEEYEERQVAKVENQVNKVEKLLKGEK----GEARPWFQTKKQR 574
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 36/92 (39%)
Query: 3 VDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSS 62
VDL++TI DD+E+ ++S++SD EVE
Sbjct: 10 VDLIRTIGDDDEIEDFSEESDAEVE----------------------------------- 34
Query: 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP K K K+ DFD DF FVSS EEYNKD+
Sbjct: 35 -FQPTKQKNKRKVDFDTDFQFVSSAEEYNKDS 65
>gi|340717314|ref|XP_003397129.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
terrestris]
Length = 740
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/232 (59%), Positives = 179/232 (77%), Gaps = 18/232 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DH M+FV TK++AH +HILLGLLGIK GELHGNLTQ
Sbjct: 380 IRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQ 439
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L KFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +++HYIHRVGRTARAG+
Sbjct: 440 PQRLENLTKFKNEEIDILLATDVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGR 499
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK++IKNAKNPVK+RII P +I+DKY K+
Sbjct: 500 VGVSVSLAGEQERSLVKEIIKNAKNPVKNRIILP----------------DIIDKYSKKL 543
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+++E +V KIL EE+++R L K + Q ++AEK+LK + ++ R WFQT+
Sbjct: 544 QSLETDVNKILEEERNERELAKIENQANRAEKLLKNES--NKGAQRTWFQTQ 593
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTIEDD+EVPN+S+DSD E +
Sbjct: 5 DLIKTIEDDQEVPNFSEDSDVE------------------------------------DD 28
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP+K K K+ DFDN+F FV+ I +YNKDT
Sbjct: 29 FQPRKQKKKENKDFDNNFQFVNDISDYNKDT 59
>gi|350416437|ref|XP_003490948.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus
impatiens]
Length = 741
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/232 (59%), Positives = 179/232 (77%), Gaps = 18/232 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK+ DR+A+LAAL+CRTF DH M+FV TK++AH +HILLGLLGIK GELHGNLTQ
Sbjct: 381 IRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQ 440
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RLE+L KFK+EE D+L+ATDVAARGLDI GVKTVIN+ MP +++HYIHRVGRTARAG+
Sbjct: 441 PQRLENLTKFKNEEIDILLATDVAARGLDISGVKTVINFVMPVTMQHYIHRVGRTARAGR 500
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSVS+AGE +R LVK++IKNAKNPVK+RII P +I+DKY K+
Sbjct: 501 VGVSVSLAGEQERSLVKEIIKNAKNPVKNRIILP----------------DIIDKYSKKL 544
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+++E +V KIL EE+++R L K + Q ++AEK+LK + ++ R WFQT+
Sbjct: 545 QSLETDVNKILEEERNERELAKIENQANRAEKLLKNES--NKGTQRTWFQTQ 594
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 36/91 (39%)
Query: 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSE 63
DL+KTIEDD+EVPN+S+DSD E +
Sbjct: 6 DLIKTIEDDQEVPNFSEDSDVE------------------------------------DD 29
Query: 64 YQPKKFKTKKITDFDNDFSFVSSIEEYNKDT 94
+QP+K K K+ DFDN+F FV+ I +YNKDT
Sbjct: 30 FQPRKQKKKENKDFDNNFQFVNDISDYNKDT 60
>gi|89632638|gb|ABD77551.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Ictalurus punctatus]
Length = 289
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 171/242 (70%), Gaps = 17/242 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A++AAL+ RTF+DH M+F TK++AH MHILLGL+G+K GELHGNL+Q
Sbjct: 6 RIRPAREGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQT 65
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLESLR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++ +HY+HRVGRTARAGK
Sbjct: 66 QRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPNTPKHYVHRVGRTARAGKV 125
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+++K AK PVK RIIP E++ K+R +E
Sbjct: 126 GRSVSLVGESERKMLKEIVKKAKAPVKARIIP----------------QEVILKFRDLIE 169
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E +V +L EK ++ + ++ Q++ A++ L +K + P R WFQ+ ER + S
Sbjct: 170 KLEKDVYAVLRLEKEEKEMVHSEAQINVAQRRLTQKSD-EKQPARSWFQSHDERKKERMS 228
Query: 372 QA 373
+A
Sbjct: 229 KA 230
>gi|405953609|gb|EKC21239.1| Putative ATP-dependent RNA helicase DDX27 [Crassostrea gigas]
Length = 740
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 172/235 (73%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++A+LV RTF+DH ++F+ TK++AH MHI+LGLLG+ GELHGNL+Q
Sbjct: 390 IRIRPNREGDREAIIASLVSRTFRDHCIVFIQTKKQAHRMHIILGLLGVNVGELHGNLSQ 449
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L++FK + DVL+ATD+AARGLDI GVKTVIN+ MP++++HY+HRVGRTARAGK
Sbjct: 450 AQRLETLKRFKQADVDVLLATDLAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGK 509
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SV++ GE +RKL+K+V+K A+ P+K RI+P E++ KYR K+
Sbjct: 510 KGRSVTLVGEQERKLLKEVVKKARTPLKTRIVPQ----------------EVISKYRDKI 553
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+E ++++I T+EK + L + Q++KA+K+L+ +K ++ R WFQT KER
Sbjct: 554 SKLEKDLEEIETQEKEESYLRATENQMNKAKKLLEREKNGMDDQKRSWFQTHKER 608
>gi|390333392|ref|XP_783077.3| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Strongylocentrotus purpuratus]
Length = 734
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 166/235 (70%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A+++AL CR F DH M+FV TK++AH +H++LGLLGIK GELHG+L+Q
Sbjct: 375 IRIRDNREGDREAIVSALCCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQ 434
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+E LR FK++ D+L+ATD+AARGLDI GVKTVIN+ MP+S +HY+HRVGRTARAG+
Sbjct: 435 TKRMEMLRMFKEDLIDILVATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGR 494
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+AGE +R+++K+++K AKNPVK RIIP G +V KYR K+
Sbjct: 495 SGRSVSLAGEKERRMLKELVKRAKNPVKSRIIPQG----------------VVAKYRDKI 538
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E +++++L E+ ++ + + Q+ KA ML + P R WFQ+ KER
Sbjct: 539 ASLEEDIEEVLRLEREEKEMRTTELQLQKATMMLNHHSEIMSRPKRSWFQSHKER 593
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 163/229 (71%), Gaps = 16/229 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+++AL R+FKDH ++FVPTK++AH ++LGLLGIK ELHG+LTQ
Sbjct: 368 RIRSNKEADREAIVSALCLRSFKDHCLVFVPTKKQAHRQRLILGLLGIKTSELHGSLTQL 427
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L+ FK+ E D+LIATD+AARGLDI V+TVINY MP +++ YIHRVGRTARAGK
Sbjct: 428 QRLEALKGFKEAEVDILIATDLAARGLDIENVRTVINYSMPPTVKQYIHRVGRTARAGKS 487
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SV++ GE RK++K+++K AK P K+R+IP AE+++KY++K+
Sbjct: 488 GKSVTLVGEKGRKVLKEIVKGAKCPPKNRVIP----------------AEVIEKYKSKIS 531
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
++E E++ IL +E+ ++ + A +V+KA M+ +H PPR WFQ
Sbjct: 532 SLESEIRDILKQEEEEKQVRVAQMEVTKANNMIVHHDEIHSRPPRVWFQ 580
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 172/237 (72%), Gaps = 17/237 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK D++A+LAALV RTF+ + +IFV TK +AH++ ILLG L +KAGELHGNL Q
Sbjct: 378 IRIRKGREGDKEAVLAALVRRTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQ 437
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P RL++L++FK+ E D+L+ATDVAARGLDI GVKTVINY +P + EHYIHRVGRTARAG+
Sbjct: 438 PERLDTLKRFKNGELDILVATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGR 497
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SVS+A E +RKLVK+++K A+ PVK RIIPP +I+ KY+ KV
Sbjct: 498 SGISVSLACESERKLVKEIVKKAERPVKSRIIPP----------------QILLKYKKKV 541
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHE-NPPREWFQTKKERA 366
E + +V K+L EE +RLL KA+ Q++ EK LK ++ + REWFQTKK+R+
Sbjct: 542 EELGEDVDKVLKEELEERLLQKAEMQMNAMEKKLKSNDNNNDYDKTREWFQTKKQRS 598
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 172/242 (71%), Gaps = 17/242 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A++AAL+ RTF+DH M+F T+++AH +HILLGL+G+K GELHG L+Q
Sbjct: 389 RIRPHREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQN 448
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 449 QRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPGTVKHYVHRVGRTARAGRS 508
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+V+K+AK+ VK RI+PP E++ K+R +
Sbjct: 509 GRSVSLVGESERKMLKEVVKSAKSTVKARILPP----------------EVILKFRDLIS 552
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E +V+ ++ E+ +R L ++ ++S A+K L + + R WFQT++ER + S
Sbjct: 553 KLEKDVEAVMKLEREERELAASEAKLSVAQKRLTDSAS-SDQSQRVWFQTQQERKQSRMS 611
Query: 372 QA 373
+A
Sbjct: 612 KA 613
>gi|443720455|gb|ELU10207.1| hypothetical protein CAPTEDRAFT_141736, partial [Capitella teleta]
Length = 616
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 171/258 (66%), Gaps = 16/258 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++ AL+ RTF D M+FV TK++AH +HI+LGLLGI+ GELHGNL+Q
Sbjct: 256 IRIRPNREGDREAVVGALLKRTFHDQVMVFVQTKKQAHRLHIILGLLGIRVGELHGNLSQ 315
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FKD + DVL+ATD+AARGLDI GV+TVIN+ MP + HYIHRVGRTARAGK
Sbjct: 316 QQRLESLKRFKDGDVDVLLATDLAARGLDIDGVRTVINFTMPSTCAHYIHRVGRTARAGK 375
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G ++++AGE +RK++K+V+K A PVK R++P ++V ++R K+
Sbjct: 376 SGRAITLAGEQERKVLKEVVKKATLPVKSRVVP----------------QDVVTRFREKI 419
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
+++E E+ I +E ++ + + +V+KA+KM++ ++ + P R WFQT ER K
Sbjct: 420 DSLESEITAIERQEVEEKEMRITELKVNKAQKMIEHQEEIMSRPKRGWFQTHNERMREKE 479
Query: 371 SQAGEGLAALILYLQSHS 388
L L HS
Sbjct: 480 LFLFLLSFLETLRLDVHS 497
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/244 (50%), Positives = 176/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 406 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 465
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 466 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 525
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 526 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQ----------------DVILKFRDKI 569
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E +R + +++ Q+ A+++L K K+ + P R WFQTK+ER K
Sbjct: 570 EKMEKDVYAVLQLEAEEREVQQSEAQIDTAQRLLSKGKQTADQEPERSWFQTKEERKKEK 629
Query: 370 TSQA 373
++A
Sbjct: 630 IAKA 633
>gi|47211205|emb|CAF90162.1| unnamed protein product [Tetraodon nigroviridis]
Length = 517
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 171/246 (69%), Gaps = 25/246 (10%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A++AAL+ RTF+DH M F T+++AH +HILLGL+G+K GELHG L+Q
Sbjct: 169 RIRPNKEGDREAVVAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQN 228
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 229 QRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPSTMKHYVHRVGRTARAGRS 288
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+V+K+AK VK R++PP E++ K+R +
Sbjct: 289 GRSVSLVGESERKILKEVVKSAKTSVKARVLPP----------------EVILKFRDLIS 332
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPP----REWFQTKKERAA 367
+E +V+ ++ EK +R L ++ ++S A+K L N P R WFQT++ER
Sbjct: 333 KLEKDVEAVVKLEKEERELAASEAKLSVAQKQLD-----GSNTPAQSQRVWFQTQQERKQ 387
Query: 368 IKTSQA 373
+ S+A
Sbjct: 388 SRISKA 393
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 172/243 (70%), Gaps = 17/243 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR+A++AAL+ RTF+DH M+F T+++AH +HILLGL+G+K GELHG L+Q
Sbjct: 420 IRIRPHREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQ 479
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKD++ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 480 NQRLENLRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGR 539
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +R+++K+V+K+AKN VK R++PP ++V K+R +
Sbjct: 540 SGRSVSLVGESERRILKEVVKSAKNSVKARVLPP----------------DVVLKFRDLI 583
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
+E +V+ ++ EK +R L ++ ++S A+K L E+ R WFQT++ER +
Sbjct: 584 CKLEKDVEAVMRLEKEERELAASEAKLSVAQKRLDGSASSSES-QRVWFQTQQERKQSRV 642
Query: 371 SQA 373
S+A
Sbjct: 643 SKA 645
>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
gi|341940504|sp|Q921N6.3|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
Length = 760
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 176/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 406 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 465
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 466 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 525
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 526 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 569
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q+ A+++L K K+ + P R WFQTK+ER K
Sbjct: 570 EKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQTKEERKKEK 629
Query: 370 TSQA 373
++A
Sbjct: 630 IAKA 633
>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
Length = 572
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 176/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 218 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 277
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 278 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 337
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 338 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 381
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q+ A+++L K K+ + P R WFQTK+ER K
Sbjct: 382 EKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQTKEERKKEK 441
Query: 370 TSQA 373
++A
Sbjct: 442 IAKA 445
>gi|354480665|ref|XP_003502525.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Cricetulus
griseus]
Length = 788
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/244 (50%), Positives = 175/244 (71%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 433 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 492
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 493 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 552
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RIIP +++ K+R K+
Sbjct: 553 AGRSVSLVGEEERKMLKEIVKAAKAPVKARIIPQ----------------DVILKFRDKI 596
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q+ A+++L K K+ + P R WFQTK ER K
Sbjct: 597 EKMEKDVYAVLRLEAEEKEMQQSEAQIDTAKRLLEKGKETADQEPERSWFQTKAERKKEK 656
Query: 370 TSQA 373
++A
Sbjct: 657 IAKA 660
>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
[Ciona intestinalis]
Length = 718
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 163/235 (69%), Gaps = 20/235 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR+ DR+A++AAL R+F + ++F TK++AH MHI+LGLLG+KAGELHGNL+Q
Sbjct: 393 IRIRETREGDREAIVAALCSRSFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQ 452
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLESL++FK+ + D+L+ TD+AARGLDI VKTVIN MP++ +HY+HRVGRTARAGK
Sbjct: 453 GQRLESLKRFKNGDIDILVCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGK 512
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RKL+K+++K AKNPVK R++PP +++ K+R K+
Sbjct: 513 SGRSVSLVGETERKLLKEIVKFAKNPVKSRVVPP----------------DVISKFRDKL 556
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
IE EV ++ E ++ + ++ QV KAEK++K + P R WFQ K +R
Sbjct: 557 NEIESEVGDVMKMEAQEKQVIASENQVKKAEKIIKGEAP----EKRAWFQNKMQR 607
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 182/260 (70%), Gaps = 20/260 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 409 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 469 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ ++R ++
Sbjct: 529 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILRFRDRI 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E +R + +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 573 EKMEKDVYAVLQLEAEEREMQQSEAQINTAKRLLEKGKEAPDQEPERSWFQTKEER---K 629
Query: 370 TSQAGEGLAALILYLQSHSK 389
+ G+ L L L+ K
Sbjct: 630 KEKIGKALQEFDLALRGKKK 649
>gi|410931566|ref|XP_003979166.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like, partial
[Takifugu rubripes]
Length = 697
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 170/242 (70%), Gaps = 17/242 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A++AAL+ RTF+DH M F T+++AH +HILLGL+G+K GELHG L+Q
Sbjct: 406 RIRPNKEGDREAVVAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMGLKVGELHGELSQN 465
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP +++HY+HRVGRTARAG+
Sbjct: 466 QRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRS 525
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ GE +RK++K+V+K+AK VK R++P AE++ K+R +
Sbjct: 526 GRSVSLVGESERKILKEVVKSAKTTVKARVLP----------------AEVILKFRDLIS 569
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E +V+ ++ E+ +R L ++ ++S A+K L + R WFQT++ER + S
Sbjct: 570 KLEKDVEAVIKLEREERELAASEAKLSVAQKKL-DGSATSTQSQRVWFQTQQERKQSRLS 628
Query: 372 QA 373
+A
Sbjct: 629 KA 630
>gi|344249399|gb|EGW05503.1| putative ATP-dependent RNA helicase DDX27 [Cricetulus griseus]
Length = 486
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/244 (50%), Positives = 175/244 (71%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 131 IRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 190
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 191 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGR 250
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RIIP +++ K+R K+
Sbjct: 251 AGRSVSLVGEEERKMLKEIVKAAKAPVKARIIPQ----------------DVILKFRDKI 294
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E ++ + +++ Q+ A+++L K K+ + P R WFQTK ER K
Sbjct: 295 EKMEKDVYAVLRLEAEEKEMQQSEAQIDTAKRLLEKGKETADQEPERSWFQTKAERKKEK 354
Query: 370 TSQA 373
++A
Sbjct: 355 IAKA 358
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 176/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ R+F DH M+F TK++AH MHILLGLLG++ GELHGNL+Q
Sbjct: 447 IRIRPNREGDREAIVAALLTRSFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQ 506
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ D+L+ATDVAARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+
Sbjct: 507 TQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 566
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ K+R K+
Sbjct: 567 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILKFRDKI 610
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
E +E +V +L E +R + ++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 611 EKMEKDVYAVLQLEAEEREMQHSEAQINAAQRLLEKGKEAPDKEPERSWFQTKEERKKEK 670
Query: 370 TSQA 373
++A
Sbjct: 671 IAKA 674
>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
Length = 563
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 170/249 (68%), Gaps = 21/249 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AA RTF DH ++F+ TK +AH MHI+LGLLG+ GELHGNL+Q
Sbjct: 218 IRIRPNREGDREAIIAA---RTFHDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQ 274
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L++FKD E DVL+ATD+AARGLDI+GVKTVIN+ MP +L+HYIHRVGRTARAGK
Sbjct: 275 TQRLETLKRFKDAEVDVLLATDLAARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGK 334
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G +V++ GE +R+ +K V+KNA+NPVK R++P E++ KYR K+
Sbjct: 335 SGRAVTLVGEKERRYLKDVVKNARNPVKSRVVP----------------QEVILKYRDKI 378
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E +E +V +IL E ++ + + ++++A+ ML + + R WFQT KER K
Sbjct: 379 EKMEKDVAEILRLEAEEKEMASTENKMNRAQNMLNSPDNMAQQ-KRGWFQTHKERMEEKA 437
Query: 371 SQA-GEGLA 378
A GE +A
Sbjct: 438 RLALGEPIA 446
>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
Length = 563
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 172/239 (71%), Gaps = 16/239 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR++ DR+A+ AAL RTF DH ++FV TK++ H +HI+LG+LG+ GELHGNL+Q
Sbjct: 218 IRIRENREGDREAIAAALCSRTFHDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQ 277
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FK+ D+++ATD+AARGLDI G+KT+IN+ MP++++HY+HRVGRTARAGK
Sbjct: 278 TQRLETLRRFKESNIDIMLATDLAARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGK 337
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K A+NPVK R++PP +IV KYR K+
Sbjct: 338 SGRSVSLCGEKERKMLKEIVKRARNPVKSRVVPP----------------DIVAKYRDKI 381
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
E +E +++KI+ E+ ++ L ++ QV+KA+ +++ ++ P R WFQ+ ER A K
Sbjct: 382 EKMETDIEKIIKLEEEEKELRISELQVNKAKAIIEHHDEIYSRPKRSWFQSHMERMAEK 440
>gi|427792819|gb|JAA61861.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 696
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/234 (51%), Positives = 165/234 (70%), Gaps = 17/234 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A+LAALVCRTF DHT++FV TK+ AH + +LLGLLG + ELHGNL Q
Sbjct: 348 RIRPQREGDREAILAALVCRTFHDHTIVFVQTKKLAHRLRVLLGLLGARVDELHGNLNQA 407
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L +FK+ E DVL+ TD+ ARGLDI+ VKTVIN+ +PH+++HY+HRVGRTARAGK
Sbjct: 408 QRLEALHRFKEMEVDVLVTTDLVARGLDIKDVKTVINFTLPHTVQHYVHRVGRTARAGKS 467
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVSM GE +RKL+K+++K A+ PVK RI+PP ++V +R K+
Sbjct: 468 GRSVSMVGEQERKLLKEIVKQARTPVKQRILPP----------------DVVAHFREKIA 511
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+E E++ IL EEK ++ L +++V KA +++ +K +E P R WFQT KE+
Sbjct: 512 GLEQEIESILQEEKAEKELGVMEKEVEKASELVNKKAAANE-PQRSWFQTPKEK 564
>gi|241703419|ref|XP_002413210.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215507024|gb|EEC16518.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 364
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 164/235 (69%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R DR+A+LAALVCRTF DHT++FV TK+ AH + +LLGLLG++A ELHGNL Q
Sbjct: 13 IRVRPQREGDREAILAALVCRTFHDHTIVFVQTKKLAHRLRVLLGLLGVRADELHGNLNQ 72
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L +FK+ E DVL+ TD+ ARGLDI+ VKTVIN+ +PH+++HY+HRVGRTARAGK
Sbjct: 73 AQRLEALHRFKELEVDVLVTTDLVARGLDIKDVKTVINFTLPHTVQHYVHRVGRTARAGK 132
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVSM GE +RKL+K+++K AK VK RI+P E++ YR K+
Sbjct: 133 SGRSVSMVGEQERKLLKEIVKQAKTAVKQRILPQ----------------EVIAHYREKI 176
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E EV+ IL EEK ++ L ++ V KA +++ +K + P R WFQT KE+
Sbjct: 177 ASLEEEVENILKEEKAEKELGNIEKDVEKATELINKKAADLKEPKRSWFQTPKEK 231
>gi|449684384|ref|XP_002156411.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Hydra magnipapillata]
Length = 544
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 164/236 (69%), Gaps = 16/236 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR A++ AL CR+F T++F+ TK AH++ I+ GL G+KA ELHGNLTQ
Sbjct: 219 RIRSTREADRLAVVVALCCRSFNQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQL 278
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L KFK+ E D+L+ATD+AARGLDI GVKTVI++ MP +++ YIHRVGRTARAGK
Sbjct: 279 QRLEALEKFKNNEVDILVATDLAARGLDIVGVKTVISFNMPTTIKSYIHRVGRTARAGKA 338
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+++ GE +RK++K+V+KNAK PVK+RI+ E+V+KY+ K+E
Sbjct: 339 GRSITLVGEKERKMLKEVVKNAKIPVKNRILS----------------TEVVEKYKNKLE 382
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+ E ++++IL EE+ + L A+ +++KA+ +++ + P + + +T+K+ +A
Sbjct: 383 SFEKDIKEILKEEESAKQLRVAEMEMNKAKNLIEHHDEIMSRPAKTFIKTQKQSSA 438
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 157/235 (66%), Gaps = 17/235 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R + DR ALL L RTF+ +IF +K AH+M I+ GLLG+KAGELHGNLTQ
Sbjct: 444 RVRDNREDDRPALLMTLCKRTFRTRCIIFFRSKAFAHQMRIVFGLLGMKAGELHGNLTQE 503
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +L++FKD + D L+ATD+A+RGLDIRG++TVINY MP + Y+HRVGRTARAG
Sbjct: 504 QRLRALQQFKDGDVDFLLATDLASRGLDIRGIETVINYDMPGQIAQYLHRVGRTARAGSK 563
Query: 252 GVSVSMAGEVDRKLVKQVIKNA-KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SV++ GE DRK++K VIK++ + VKHR++P AE V K AK+
Sbjct: 564 GRSVTLVGEADRKMLKAVIKHSPADQVKHRLVP----------------AEAVAKMAAKL 607
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ + EV +L EEK ++ L +A+ Q+ K E +++ ++ + P R WFQT+KE+
Sbjct: 608 KGLHDEVDAVLKEEKEEKALRQAEMQLKKGENLIEHEEAIFSRPARTWFQTEKEK 662
>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
cuniculus]
Length = 789
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 178/244 (72%), Gaps = 17/244 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH +HILLGLLG++ GELHGNL+Q
Sbjct: 434 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQ 493
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+LR+FKDE+ DVL+ATDVAARGLDI GVKTV+N+ MP++++HY+HRVGRTARAG+
Sbjct: 494 TQRLEALRRFKDEQIDVLVATDVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGR 553
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE +RK++K+++K AK PVK RI+P +++ ++R K+
Sbjct: 554 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILP----------------QDVILRFRDKI 597
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIK 369
EA+E +V +L E ++ + +++ Q++ A+++L K K+ + P R WFQTK+ER K
Sbjct: 598 EAMEKDVYAVLQLEAEEKAMQQSEAQINTAKRLLEKGKEAPGQEPERSWFQTKEERKKEK 657
Query: 370 TSQA 373
++A
Sbjct: 658 IAKA 661
>gi|119596073|gb|EAW75667.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_c [Homo
sapiens]
Length = 450
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 156/220 (70%), Gaps = 17/220 (7%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D + V KR+ MHILLGL+G++ GELHGNL+Q RLE+LR+FKDE+ D+L+ATDVA
Sbjct: 118 DEKIEKVRKKRKTERMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVA 177
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLDI GVKTVIN+ MP++++HY+HRVGRTARAG+ G SVS+ GE +RK++K+++K AK
Sbjct: 178 ARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAK 237
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKAD 334
PVK RI+P +++ K+R K+E +E +V +L E ++ + +++
Sbjct: 238 APVKARILPQ----------------DVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSE 281
Query: 335 EQVSKAEKML-KEKKPLHENPPREWFQTKKERAAIKTSQA 373
Q++ A+++L K K+ + + P R WFQTK+ER K ++A
Sbjct: 282 AQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKA 321
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%), Gaps = 19/236 (8%)
Query: 135 KDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
+D H R A+L L RTF+D +IFV +K+ AH++ IL GLLG+ A ELHG+L+Q RL
Sbjct: 318 EDQH--RAAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRL 375
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
+SL F+D + D L+ATD+A+RG+DIRGV+TVINY MP LE Y+HRVGRTARAG+ G +
Sbjct: 376 QSLSLFRDGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRA 435
Query: 255 VSMAGEVDRKLVKQVIKNA-KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
V++ GE DR+L+K V+K VKHR++P +E+V K + ++
Sbjct: 436 VTLVGEPDRRLLKTVLKRTPPEQVKHRLMP----------------SEMVQKLSDTIASL 479
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ EV++IL EEK +R L +A+ +V K E M+ + ++ P R WFQ++K +A K
Sbjct: 480 KPEVEQILQEEKEERALRQAEMEVQKGENMMAHQDEIYARPARTWFQSEKAKADAK 535
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 157/236 (66%), Gaps = 18/236 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R++ +R A+L L RTF++ +IF +K+ AH+M I+ GLL ++A ELHG+LTQ
Sbjct: 401 RVKAGRESERAAILVTLCKRTFRERVIIFFRSKKLAHQMRIMFGLLDMRADELHGDLTQE 460
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL SL+ F+D + D L+ATD+A+RGLDI+G++TVINY MP L Y+HRVGRTARAGK
Sbjct: 461 QRLTSLQAFRDGKVDYLMATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKN 520
Query: 252 GVSVSMAGEVDRKLVKQVIK--NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G SV++ GE DRK++K IK ++++ V+HR++P AE+V+K+ +
Sbjct: 521 GRSVTLVGEADRKMLKAAIKHGSSEDKVRHRLVP----------------AEVVEKWSEQ 564
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ +++ E+Q +L +EK + + +A+ ++ K E MLK + + P R WFQT KE+
Sbjct: 565 IGSLQDEIQIVLDQEKEAKQMRQAEMELQKGENMLKYEDEIFSRPARTWFQTSKEK 620
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 175/292 (59%), Gaps = 35/292 (11%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ + S+ T +A+MT + L PV L + R+R
Sbjct: 363 TEIIKSCPMSRQTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTASGLVQEFVRVRAG 422
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R ALL L RTFK +IF +K+ AH+M I+ LL +KA ELHG+L+Q RL++
Sbjct: 423 KESERSALLVTLCKRTFKSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQEQRLKA 482
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L++F+D D L+ATD+A+RGLDI+G++TVINY MP L Y+HRVGRTARAGK G SV+
Sbjct: 483 LQQFRDGAVDFLMATDLASRGLDIKGIETVINYDMPSQLAQYLHRVGRTARAGKKGRSVT 542
Query: 257 MAGEVDRKLVKQVIKN--AKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK++K IK+ A++ V+HR IPP E V K+ AK++ ++
Sbjct: 543 LVGEADRKMLKASIKHAMAEDSVRHRQIPP----------------EAVAKWSAKLDDMK 586
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
E+ ++L EEK ++ L +A+ +V K + M++ + + P R WFQT KE+A
Sbjct: 587 KEIAEVLQEEKEEKQLRQAEMEVKKGQNMIEHEAEIFSRPARTWFQTGKEKA 638
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 184/307 (59%), Gaps = 39/307 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ A S+ T +A+MT + L PV L + RIRK+
Sbjct: 344 TEIIKACPKSRQTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKE 403
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+ DR A+L AL +T+K +IFV +K+ AH+M I+ LLG+K ELHG+L+Q RL++
Sbjct: 404 S--DRPAMLVALCKQTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQA 461
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L+ F++ D L+ATD+A+RGLDI+GV+TV+NY MP + Y+HRVGRTARAG+ G SV+
Sbjct: 462 LQSFREGSVDYLMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVT 521
Query: 257 MAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRKL+K IK+A ++ V+ R++ +V KY K+E ++
Sbjct: 522 LVGEADRKLLKAAIKHAAGEDQVRQRVLD----------------TTVVQKYADKLEGLK 565
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK--TSQ 372
GE+ +++ EEK ++ L +A+ +++K E M+K + + P R WFQT KE+ K + Q
Sbjct: 566 GEIAEVMREEKEEKQLRQAEMELTKGENMMKHQDEIFSRPARTWFQTNKEKEKAKEISKQ 625
Query: 373 AGEGLAA 379
EG +A
Sbjct: 626 LHEGKSA 632
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 151/241 (62%), Gaps = 16/241 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
+I++ DR A+L AL R+FK +IF K+EAH + ++ GL G+KA ELHGNL+Q
Sbjct: 415 IKIKEAREFDRDAMLLALCTRSFKKRVLIFFRAKKEAHRLKVIFGLAGLKAAELHGNLSQ 474
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L KF+D D L+ATD+AARGLDI G++T+INY M ++E YIHRVGRTAR G
Sbjct: 475 NQRLEALEKFRDGNFDYLLATDLAARGLDILGIETIINYNMARTVESYIHRVGRTARWGH 534
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SV+ E DRK+ K+++K+ V +R+IPP +I+D++R K+
Sbjct: 535 SGKSVTFISEQDRKVFKEIMKSTNQKVSNRVIPP----------------KIIDQWREKI 578
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
++++G++ +I E ++ L + SK + M++ + PPR WFQTK++R K
Sbjct: 579 DSMKGDISQIFAMEYEEKQLRLTQMEASKTQNMIEHHDEIMSRPPRTWFQTKEQRDLAKG 638
Query: 371 S 371
S
Sbjct: 639 S 639
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 179/292 (61%), Gaps = 35/292 (11%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ + S+ T +A+MT + L PV L + R+R
Sbjct: 378 TEIIKSCPTSRQTMLFSATMTDTVDELVRMSLNKPVRLFVDPKRTTARGLVQEFVRVRAG 437
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R ALLAAL RTF+ ++IF +K+ AH+M I+ LLG+K+ ELHG+L+Q RL++
Sbjct: 438 KEAERSALLAALCKRTFRTKSIIFFRSKKLAHQMRIVFSLLGMKSDELHGDLSQEQRLKA 497
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L++F+D D L+ATD+A+RGLDI+G++TVINY MP L Y+HRVGRTARAGK G SV+
Sbjct: 498 LQQFRDGTVDYLMATDLASRGLDIKGIETVINYDMPGQLALYLHRVGRTARAGKKGRSVT 557
Query: 257 MAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK++K IK+A ++ V+HR +P AE + K+ K+ +++
Sbjct: 558 LVGEADRKMLKAAIKHAAGEDQVRHRQVP----------------AEAIAKWSEKLASLK 601
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
E+ +IL EEK ++ +A+ ++ K + +++ ++ ++ P R WFQT KE+A
Sbjct: 602 NEISEILQEEKEEKQFRQAEMELKKGQNLIEHEEEIYSKPARTWFQTGKEKA 653
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 182/308 (59%), Gaps = 38/308 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLL-----------CLLCF-RIRKD 136
TEI+ + S+ T +A+MT + L PV L L F R+R
Sbjct: 353 TEIITSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFVDPKRSTARGLLQEFVRVRAG 412
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R ALL AL R+FK +IF +K+ AH+M I+ LLG+K ELHG+LTQ RL++
Sbjct: 413 KETERSALLVALCKRSFKARAIIFYRSKKLAHQMRIMFSLLGMKCDELHGDLTQEQRLKA 472
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L++F+D D L+ATD+A+RGLDI+G++TVINY MP +L Y+HRVGRTARAGK G SV+
Sbjct: 473 LQQFRDGHVDYLMATDLASRGLDIKGIETVINYDMPGTLSQYLHRVGRTARAGKKGRSVT 532
Query: 257 MAGEVDRKLVKQVIK--NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRKL+K IK ++++ V+HR +P E++ K+ K+ ++
Sbjct: 533 LVGEADRKLLKAAIKHSSSEDQVRHRQVP----------------TEVLAKWAQKLAGLK 576
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA---AIKTS 371
E+ +IL EEK ++ + +A+ ++ K + M++ + + P R WFQT KE+A A+ S
Sbjct: 577 EEISEILQEEKEEKHIRQAEMELKKGQNMIEHEAEIFSRPARTWFQTGKEKAQAEALSKS 636
Query: 372 QAGEGLAA 379
Q G A
Sbjct: 637 QYEAGFDA 644
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%), Gaps = 18/236 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR+ DR A+L AL ++FK+ +IF +K AH+M IL GL+G+ A ELHGNLTQ
Sbjct: 439 RIRQAREADRSAVLLALCKKSFKNKVIIFFRSKAAAHQMKILFGLMGLNAAELHGNLTQE 498
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L +F+D + D L+ATD+AARGLDI+G++TVINY MP Y+HRVGRTARAG+
Sbjct: 499 QRLEALEQFRDNQVDYLLATDLAARGLDIKGIETVINYNMPTQFAQYLHRVGRTARAGRN 558
Query: 252 GVSVSMAGEVDRKLVKQVIK--NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G SV++ GE DRK++K IK +A + VK+R++P E V KY+ K
Sbjct: 559 GRSVTLVGESDRKMLKMAIKSSSAGSQVKNRVVPN----------------EAVQKYKLK 602
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE ++ ++++IL EEK ++ L A+ Q+ ++E M+K + + P R WFQ++KE+
Sbjct: 603 VEKLQRQIKEILEEEKEEKALRNAEMQIKRSENMIKHQDEIMSRPARTWFQSEKEK 658
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 178/308 (57%), Gaps = 38/308 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ + S+ T +A+MT + L PV L + R+R
Sbjct: 384 TEIIQSCPTSRQTMLFSATMTDSVDELVKMSLNKPVRLFVDPKRSTARGLVQEFVRVRAG 443
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
DR ALL AL RTFK +IF +K+ AH++ I+ LLG+ ELHG+L+Q RL+S
Sbjct: 444 KESDRSALLVALCKRTFKSGVLIFFRSKKLAHQVRIMFSLLGMSCEELHGDLSQEQRLKS 503
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L+ F+D D L+ATD+A+RGLDI+G+ TVIN+ MP L Y+HRVGRTARAGK G SV+
Sbjct: 504 LQLFRDGAVDYLMATDLASRGLDIKGIDTVINFDMPGQLAQYLHRVGRTARAGKKGRSVT 563
Query: 257 MAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK++K IK++ + V+HR +PP EIV KY K+++++
Sbjct: 564 LVGEADRKMLKAAIKHSAGADQVRHRTVPP----------------EIVAKYVKKLDSLK 607
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER---AAIKTS 371
E+ ++ +EK ++ L KA+ ++ K + M+ + ++ P R WFQ+ KE+ A + S
Sbjct: 608 PEITGVMQDEKEEKHLRKAEMELQKGQNMINHEDEIYSRPARTWFQSGKEKQKAADLSKS 667
Query: 372 QAGEGLAA 379
Q G +A
Sbjct: 668 QYEAGYSA 675
>gi|393240212|gb|EJD47739.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 778
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 156/246 (63%), Gaps = 29/246 (11%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R++ DR +LAAL RTFK +IF +K+ AH+M + LL + AGELHG+LTQ
Sbjct: 398 RVRREE--DRGGMLAALCKRTFKARAIIFFRSKKLAHQMRVAFALLNLNAGELHGDLTQE 455
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL SL++F+D + D L+ATD+A+RGLDI+GV+ VINY MP L Y+HRVGRTARAG
Sbjct: 456 QRLRSLQQFRDGQIDFLMATDLASRGLDIKGVEVVINYDMPGQLAQYLHRVGRTARAGAR 515
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP-----------VKHRIIPPGYPRLKTPSFPPPPLA 300
G SV++ GE DRK++K IK++ N V+HR++PP
Sbjct: 516 GRSVTLVGESDRKMLKAAIKHSANASKDDADKVDETVRHRVVPP---------------- 559
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + K+ A + ++ E+ ++L EEK ++ + +A+ Q+ K E M++ +K + P R WFQ
Sbjct: 560 DALAKWTAALADLKDEIVRVLAEEKEEKAIRQAEMQIKKGENMIEHEKEIFSRPARTWFQ 619
Query: 361 TKKERA 366
++K++A
Sbjct: 620 SEKDKA 625
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 157/237 (66%), Gaps = 16/237 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+L AL RTF+ +T++F+ TK AH M I+ GL GIKA ELHGNL Q
Sbjct: 372 RIRPNREDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQR 431
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L+KF+D D+L+ TD+AARG+D+RGV VINY MP + Y+HRVGRTARAG+
Sbjct: 432 ERLEALQKFRDGTVDILLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRN 491
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G +V++ E R ++KQV ++ K VK R + P P +A+ ++A++E
Sbjct: 492 GRAVTLTSESRRLVMKQVSRHCKGFVKSRAV------------PDPVIAQ----WKARIE 535
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
+++G+V+ ++ EE ++ + +A+++ ++A +LK + ++ P R WF ++KE+ +
Sbjct: 536 SMQGDVKLVMHEETLEKRMREAEKEATRATNLLKHRDEINSRPARTWFMSEKEKKNV 592
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 156/240 (65%), Gaps = 18/240 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +R ALL +L RTFK +IF +K+ AH+M I+ GLLG+KA ELHG+LTQ
Sbjct: 419 RVRASKEDERSALLVSLCKRTFKGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQE 478
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L+ F++ D L+ATD+A+RGLDI+G+ TVINY MP + Y+HRVGRTARAGK
Sbjct: 479 QRLQALQAFREGSVDYLMATDLASRGLDIKGIDTVINYDMPGQVAQYLHRVGRTARAGKK 538
Query: 252 GVSVSMAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G SV++ GE DRK++K IK+A ++ V+HR +PP E V K+ K
Sbjct: 539 GRSVTLVGEADRKILKAAIKHASGEDQVRHRHVPP----------------EAVQKWSKK 582
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ ++ E+ +L EEK ++ L +A+ ++ K + +++ ++ + P R WFQ++KE+ K
Sbjct: 583 LGELKDEIAGVLQEEKEEKQLRQAEMELRKGQNLIEHEEEIKSRPARTWFQSEKEKQKSK 642
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 176/293 (60%), Gaps = 36/293 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLL-----------CLLCF-RIRKD 136
TEI+ + S+ T +A+MT + L PV L L F R+R
Sbjct: 357 TEIIKSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFVDPKRATARGLLQEFVRVRAG 416
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R ALL AL RTFK +IF +K+ AH+M I+ LL +K ELHG+L+Q RL++
Sbjct: 417 KEAERSALLVALCKRTFKSRVIIFFRSKKLAHQMRIVFRLLDMKCDELHGDLSQEQRLKA 476
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L++F+D D L+ATD+A+RGLDI+G++TVINY MP L Y+HRVGRTARAGK G SV+
Sbjct: 477 LQQFRDGHVDYLMATDLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGRSVT 536
Query: 257 MAGEVDRKLVKQVIKNA---KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+ GE DRK++K IK++ ++ ++HR +P E+V K+ K++++
Sbjct: 537 LVGEADRKMLKAAIKHSSGGEDQIRHRQVPQ----------------EVVSKWAQKLDSL 580
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
+ E+ +IL EEK ++ L +A+ ++ K + M++ + + P R WFQT KE+A
Sbjct: 581 KQEISEILQEEKEEKQLRQAEMELKKGQNMIEHEAEIFSRPARTWFQTGKEKA 633
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 175/291 (60%), Gaps = 35/291 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
TEIV A S+ T +A+MT + L PV + + R+R +
Sbjct: 356 TEIVKACPVSRQTMLFSATMTDSVDKLIRLSLTKPVRIFVDAKRSMAKGLVQEFVRVRPE 415
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R ALL + RTFK ++F +K+ AH+M I+ GLL +K ELHG+L+Q RL++
Sbjct: 416 KEKERPALLLCICKRTFKTRVIVFFRSKKLAHQMRIVFGLLDMKCDELHGDLSQEQRLKA 475
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L+ F+D D L+ATD+A+RGLDI+G++TVIN+ MP L Y+HRVGRTARAGK G SV+
Sbjct: 476 LQAFRDGSVDYLMATDLASRGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVT 535
Query: 257 MAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
GE DRK+++ V+K++ ++ V+HR++P A++V K+ K E ++
Sbjct: 536 FVGEADRKMLRAVVKHSAGEDSVRHRVVP----------------ADVVSKWAQKFEQVK 579
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
EV IL EEK ++ L +A+ ++ K + M++ +K ++ P R WFQT +E+
Sbjct: 580 EEVSVILKEEKEEKQLRQAEMELKKGQNMIEHEKEIYSRPARTWFQTGQEK 630
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 162/273 (59%), Gaps = 21/273 (7%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFKD +IF TK AH + I+ GL G+
Sbjct: 405 LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGM 464
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P Y+
Sbjct: 465 KAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL 524
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 525 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV------------AEKPV 572
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +E ++ I+ EE+ +R+L KA+ + +KAE M+ K ++ P R WF
Sbjct: 573 AECAK----LIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWF 628
Query: 360 QTKKE-----RAAIKTSQAGEGLAALILYLQSH 387
T+KE +AA +++ G+ + +I Q+
Sbjct: 629 ATEKEKKLLAKAAKESTSQGKSNSGVISAQQAE 661
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 162/273 (59%), Gaps = 21/273 (7%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFKD +IF TK AH + I+ GL G+
Sbjct: 435 LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGM 494
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P Y+
Sbjct: 495 KAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL 554
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 555 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV------------AEKPV 602
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +E ++ I+ EE+ +R+L KA+ + +KAE M+ K ++ P R WF
Sbjct: 603 AECAK----LIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWF 658
Query: 360 QTKKE-----RAAIKTSQAGEGLAALILYLQSH 387
T+KE +AA +++ G+ + +I Q+
Sbjct: 659 ATEKEKKLLAKAAKESTSQGKSNSGVISAQQAE 691
>gi|302142686|emb|CBI19889.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 151/246 (61%), Gaps = 16/246 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR+ ++++A+L AL +TF +IF TK+ AH + IL GL G KA
Sbjct: 482 PATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAA 541
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ ++ D LIATDVAARGLDI GV+TVINY P L Y+HRV
Sbjct: 542 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 601
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K ++K A + ++ RI+ +
Sbjct: 602 GRTARAGREGYAVTFVTDNDRSLLKSIVKRAGSKLRSRIVAE----------------QS 645
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V IL EE+ +R+L KA+ + +KAE M+ K ++ P R WF T+
Sbjct: 646 IIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKDDIYSRPKRTWFATE 705
Query: 363 KERAAI 368
KE+ ++
Sbjct: 706 KEKKSV 711
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 162/273 (59%), Gaps = 21/273 (7%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFKD +IF TK AH + I+ GL G+
Sbjct: 405 LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGM 464
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P Y+
Sbjct: 465 KAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYL 524
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 525 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV------------AEKPV 572
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +E ++ I+ EE+ +R+L KA+ + +KAE M+ K ++ P R WF
Sbjct: 573 AECAK----LIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHKDEIYSRPKRTWF 628
Query: 360 QTKKE-----RAAIKTSQAGEGLAALILYLQSH 387
T+KE +AA +++ G+ + +I Q+
Sbjct: 629 ATEKEKKLLAKAAKESTSQGKSNSGVISAQQAE 661
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 183/306 (59%), Gaps = 38/306 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ A S+ T +A+MT + L PV L + R+R
Sbjct: 349 TEIIKACPKSRQTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAG 408
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R LL AL RTFK +IFV +K+ AH++ I+ GL+G+K GELHG+L+Q RL +
Sbjct: 409 REKERSPLLVALCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNA 468
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L++F+D D L+ATD+A+RGLDI+GV+TVINY MP L Y+HRVGRTARAGK G SV+
Sbjct: 469 LQQFRDGTVDYLMATDLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVT 528
Query: 257 MAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK++K IK++ ++ ++HR +PP E+V K+ K+E ++
Sbjct: 529 LVGEGDRKMLKAAIKHSTGQDQIRHRTVPP----------------EVVAKWTEKLEGLK 572
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA---AIKTS 371
E+ +IL EEK ++ + +A+ ++ K + M++ +K + P R WFQT KE+A A+
Sbjct: 573 DEISEILKEEKEEKQIQQAEMELRKGQNMIEHEKEIFSRPARTWFQTGKEKASAEAVSKE 632
Query: 372 QAGEGL 377
Q GL
Sbjct: 633 QYENGL 638
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 151/246 (61%), Gaps = 16/246 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR+ ++++A+L AL +TF +IF TK+ AH + IL GL G KA
Sbjct: 339 PATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAA 398
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ ++ D LIATDVAARGLDI GV+TVINY P L Y+HRV
Sbjct: 399 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K ++K A + ++ RI+ +
Sbjct: 459 GRTARAGREGYAVTFVTDNDRSLLKSIVKRAGSKLRSRIVAE----------------QS 502
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V IL EE+ +R+L KA+ + +KAE M+ K ++ P R WF T+
Sbjct: 503 IIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKDDIYSRPKRTWFATE 562
Query: 363 KERAAI 368
KE+ ++
Sbjct: 563 KEKKSV 568
>gi|388854481|emb|CCF51868.1| related to DRS1-RNA helicase of the DEAD box family [Ustilago
hordei]
Length = 935
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 146/233 (62%), Gaps = 17/233 (7%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RK R ALL AL RTF +IFV +K+ AH++ I+ GLLG+ AGELHG+L+Q R
Sbjct: 590 RKSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQR 649
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
+++L F+D + D LIATD+A+RGLDI+GV+TVINY MP E Y+HRVGRTARAG+ G
Sbjct: 650 IDALTAFRDGKVDFLIATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGR 709
Query: 254 SVSMAGEVDRKLVKQVIKNA-KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
+V++ GE DR+++K IK + +KHRIIP A + K A +E
Sbjct: 710 AVTLVGEADRRMLKLAIKKSTAEQIKHRIIP----------------APVACKMLATLEE 753
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++ +V +L EEK +R L A+ Q+ K E M++ + P R WFQT ++
Sbjct: 754 LKPQVDAVLHEEKEERALRIAEMQLKKGENMIRHADEIFSRPKRTWFQTSADK 806
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 159/258 (61%), Gaps = 20/258 (7%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
PV L +IR D++A+L AL RTFK+ +IF K EAH + IL GL G+KA
Sbjct: 342 PVSLSEEVVKIRPALENDKEAVLLALCTRTFKEKVIIFSGMKVEAHRLKILFGLAGLKAA 401
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ +E D LIATDVAARGLDI GV+TVIN+ P + Y+HRV
Sbjct: 402 ELHGNLTQAMRLDALESFRKQEVDFLIATDVAARGLDIVGVETVINFHCPSDITVYVHRV 461
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ E +R L+K + K A + +++R + P
Sbjct: 462 GRTARAGRKGCAVTFVTERERSLLKAIAKKAGSQLQNRQVAPTS---------------- 505
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ +R+K+E +E V++++ E++++ L KA+ +V+KA+ M+ +K + P REWF +
Sbjct: 506 IYNWRSKIEEMEDGVREVMQAERYEKALRKAEMEVNKAQNMMDHEKEIFSRPKREWFLST 565
Query: 363 KER----AAIKTSQAGEG 376
KE+ AA K + G+G
Sbjct: 566 KEKKTTIAAAKARKEGKG 583
>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405, partial [Trichoplax
adhaerens]
Length = 463
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 151/233 (64%), Gaps = 16/233 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR+A++AAL R F + +IF+P K + H + I+LGLLG+ ELHGNLTQ
Sbjct: 239 IRIRPAREDDREAIIAALCYRQFNERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQ 298
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+ +FK E +L+ATD+AARGLDI GV+TVINY +P + + Y+HRVGRTARAG+
Sbjct: 299 LQRLEAFNRFKKGEIGILVATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQ 358
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G S+++ E +RKL+K ++KN+K VK RII P EI+ KY+ K+
Sbjct: 359 FGRSITLVVEKERKLLKTIVKNSKTAVKSRIISP----------------EIITKYKRKI 402
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKK 363
+ I+ +++ IL E+ ++ ++ +V+KA+ ++ ++ +H P R + Q +K
Sbjct: 403 QKIQADIKDILKAEEEEKAFRVSEMEVNKAKNLIIHEEEIHSRPKRTFIQAEK 455
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 157/240 (65%), Gaps = 23/240 (9%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR++++AALV RTF+ +T++FV TK++ M ILLGLLGIK G++ +LTQ
Sbjct: 377 IRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 436
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ESL KFK E DVL++TD+A+RGLDI GV+TVIN MP S++ YIHRVGRTARAGK
Sbjct: 437 GQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 496
Query: 251 GGVSVSMAGEVDRKLVKQVIK-NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RKL+K+++ NA +K R++ P E+V+ YR++
Sbjct: 497 AGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAP----------------EVVEAYRSR 540
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF----QTKKER 365
++ +E +Q+I E++ ++ L A+ ++K + L+ + +E R W Q +K+R
Sbjct: 541 IDDLEETIQQIDEEDRAEKELRIAESSMAKTQHALETGEAGNER--RVWLMKESQVEKQR 598
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 155/252 (61%), Gaps = 17/252 (6%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
RPP L + RIR+ +++A+L +L RTFK +IF TK+ AH + IL GL G+K
Sbjct: 318 RPPGLTEEVV-RIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLK 376
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A ELHGNLTQ RL+SL F+ +E D LIATDVAARGLDI GV+TVINY P ++ Y+H
Sbjct: 377 AAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVH 436
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLA 300
RVGRTARAG+ G +V+ + DR L+K + K + +K R+IP
Sbjct: 437 RVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPE---------------- 480
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + K+ ++ +E + +++ E+ +R L KA+ + +KAE ML+ + ++ P R WF
Sbjct: 481 QSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFM 540
Query: 361 TKKERAAIKTSQ 372
T+KE+ + ++
Sbjct: 541 TEKEKKLVAQAE 552
>gi|392884823|ref|NP_490891.2| Protein Y71G12B.8 [Caenorhabditis elegans]
gi|373219451|emb|CCD67990.1| Protein Y71G12B.8 [Caenorhabditis elegans]
Length = 739
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 146/216 (67%), Gaps = 17/216 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR+A++AALV RTF+ +T++FV TK++ M ILLGLLGIK G++ +LTQ
Sbjct: 370 IRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 429
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ESL KFK E DVL++TD+A+RGLDI GV+TVIN MP S++ YIHRVGRTARAGK
Sbjct: 430 GQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 489
Query: 251 GGVSVSMAGEVDRKLVKQVIK-NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RKL+K+++ NA +K R++ P E+V+ YR +
Sbjct: 490 AGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAP----------------EVVEAYRRR 533
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK 345
++ +E +Q+I E++ ++ L A+ ++K + L+
Sbjct: 534 IDELEETIQQIDEEDRAEKELRIAEASMAKTQNALE 569
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 155/252 (61%), Gaps = 17/252 (6%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
RPP L + RIR+ +++A+L +L RTFK +IF TK+ AH + IL GL G+K
Sbjct: 380 RPPGLTEEVV-RIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLK 438
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A ELHGNLTQ RL+SL F+ +E D LIATDVAARGLDI GV+TVINY P ++ Y+H
Sbjct: 439 AAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVH 498
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLA 300
RVGRTARAG+ G +V+ + DR L+K + K + +K R+IP
Sbjct: 499 RVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPE---------------- 542
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + K+ ++ +E + +++ E+ +R L KA+ + +KAE ML+ + ++ P R WF
Sbjct: 543 QSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFM 602
Query: 361 TKKERAAIKTSQ 372
T+KE+ + ++
Sbjct: 603 TEKEKKLVAQAE 614
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 152/246 (61%), Gaps = 16/246 (6%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK+ +IF TK AH + I+ GL G+
Sbjct: 386 LKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGM 445
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D+LIATD+AARG+DI GV+TVIN+ P ++ Y+
Sbjct: 446 KAAELHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYL 505
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P
Sbjct: 506 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEK---------PVADC 556
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
A+++D+ +E ++ I+ EE+ + L KA+ + +KAE M+ K ++ P R WF
Sbjct: 557 AKLIDQ-------LENQISNIIQEEREEMALRKAEMEATKAENMIAHKDEIYSRPKRTWF 609
Query: 360 QTKKER 365
T+KE+
Sbjct: 610 ATEKEK 615
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 155/241 (64%), Gaps = 18/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +R A+L L RTFK ++F+ +K+ AH+M I+ LLG+K ELHG+L+Q
Sbjct: 419 RVRAGKEAERSAMLVTLCRRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQE 478
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +L+ F+D+ D L+ATD+A+RGLDI+GV+TVINY MP L Y+HRVGRTARAG+G
Sbjct: 479 QRLRALQLFRDDAVDFLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRG 538
Query: 252 GVSVSMAGEVDRKLVKQVIKN--AKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G +V++ GE DRK+++ IK+ A++ V+HR++P E + + K
Sbjct: 539 GRAVTLVGEADRKMLRAAIKHAAAEDQVRHRVLP----------------TEALQHWSDK 582
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ ++ E+ +L EEK ++ + KA+ +V K + +++ + + P R WFQT +E+ A +
Sbjct: 583 LVELKDEISHVLREEKEEKQMLKAEMEVKKGQNLIEHQNEIFSRPARTWFQTGQEKKASQ 642
Query: 370 T 370
T
Sbjct: 643 T 643
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 152/246 (61%), Gaps = 16/246 (6%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK+ +IF TK AH + I+ GL G+
Sbjct: 376 LKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRLKIMFGLSGM 435
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D+LIATD+AARG+DI GV+TVIN+ P ++ Y+
Sbjct: 436 KAAELHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYL 495
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P
Sbjct: 496 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEK---------PVADC 546
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
A+++D+ +E ++ I+ EE+ + L KA+ + +KAE M+ K ++ P R WF
Sbjct: 547 AKLIDQ-------LENQISNIIQEEREEMALRKAEMEATKAENMIAHKDEIYSRPKRTWF 599
Query: 360 QTKKER 365
T+KE+
Sbjct: 600 ATEKEK 605
>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
gi|74701966|sp|Q4P9P3.1|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
Length = 932
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 153/243 (62%), Gaps = 18/243 (7%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RK R ALL +L RTF TMIFV +K+ AH++ I+ GLLG+ AGELHG+L+Q R
Sbjct: 591 RKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQR 650
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
+++L F+D +TD L+ATD+A+RGLDI+GV+TVINY MP E Y+HRVGRTARAG+ G
Sbjct: 651 IDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGR 710
Query: 254 SVSMAGEVDRKLVKQVI-KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
+V++ GE DR+++K I K++ +KHRII PS + E +++ + +V+A
Sbjct: 711 AVTLVGEADRRMLKLAIKKSSAEQIKHRII---------PSAVAAHMCETLERLKPEVDA 761
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA-AIKTS 371
+L EEK ++ L A+ ++ K E M + P R WFQ+ E+ A S
Sbjct: 762 -------VLREEKEEKALRIAEMELKKGENMANHADEIFSRPKRTWFQSGSEKTQASALS 814
Query: 372 QAG 374
+AG
Sbjct: 815 KAG 817
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 155/237 (65%), Gaps = 16/237 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR+A+L AL RTF+ +T++F+ TK AH M I+ GL GIKA ELHGNL Q
Sbjct: 354 RIRPNREDDREAILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQR 413
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLE+L+KF+D DVL+ TD+AARG+D+RGV VINY MP + Y+HRVGRTARAG+
Sbjct: 414 ERLEALQKFRDGTVDVLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRN 473
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G +V++ E R ++KQV ++ + VK R + P P +A+ ++A++E
Sbjct: 474 GRAVTLTSESRRLVMKQVSRHCQGFVKSRAV------------PDPVIAQ----WKARIE 517
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
++ +V+ ++ EE ++ + +A+++ ++A +LK + ++ P R WF ++KE+ +
Sbjct: 518 SMLEDVKLVMHEETLEKRMREAEKEATRATNLLKHRDEINARPARTWFMSEKEKKNV 574
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 147/216 (68%), Gaps = 17/216 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR++++AALV RTF+ +T++FV TK++ M ILLGLLGIK G++ +LTQ
Sbjct: 387 IRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 446
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ESL KFK E DVL++TD+A+RGLDI GV+TVIN MP S++ YIHRVGRTARAGK
Sbjct: 447 GQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 506
Query: 251 GGVSVSMAGEVDRKLVKQVIK-NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RKL+K+++ NA +K R++ P E+V+ YR +
Sbjct: 507 AGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAP----------------EVVEAYRRR 550
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK 345
++ +E +Q+I E++ ++ L A+ ++K ++ L+
Sbjct: 551 IDELEETIQQIDEEDRAEKELRIAEASMAKTQQALE 586
>gi|443897915|dbj|GAC75254.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 909
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 148/230 (64%), Gaps = 19/230 (8%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R ALL AL RTF +IFV +K+ AH++ I+ GLLG+ AGELHG+L+Q R+++L F
Sbjct: 583 RPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTAF 642
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+D + D LIATD+A+RGLDI+GV+TVINY MP E Y+HRVGRTARAG+ G +V++ GE
Sbjct: 643 RDGKVDFLIATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGE 702
Query: 261 VDRKLVKQVI-KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK 319
DR+++K I K++ + +KHRIIP AE+ K +E ++ EV
Sbjct: 703 ADRRMLKLAIKKSSADQIKHRIIP----------------AEVAGKMLETLEELKPEVDA 746
Query: 320 ILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT--KKERAA 367
+L EEK ++ L A+ ++ K E M+ + P R WFQT K++AA
Sbjct: 747 VLREEKEEKALRIAEMELKKGENMVAHADEIFGRPKRTWFQTGADKDKAA 796
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 155/252 (61%), Gaps = 17/252 (6%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
RPP L + RIR+ +++A+L +L RTFK +IF TK+ AH + IL GL G+K
Sbjct: 380 RPPGLTEEVV-RIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLK 438
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A ELHGNLTQ RL+SL F+ +E D LIATDVAARGLDI GV+TVINY P ++ Y+H
Sbjct: 439 AAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVH 498
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLA 300
RVGRTARAG+ G +V+ + DR L+K + K + +K R+IP
Sbjct: 499 RVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIP----------------E 542
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + K+ ++ +E + +++ E+ +R L KA+ + +KAE ML+ + ++ P R WF
Sbjct: 543 QSIVKWSQIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFM 602
Query: 361 TKKERAAIKTSQ 372
T+KE+ + ++
Sbjct: 603 TEKEKKLVAQAE 614
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 174/296 (58%), Gaps = 35/296 (11%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
TEI+ + S+ T +A+MT + L PV L + R+R
Sbjct: 364 TEIIKSCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLFVDPKRTTARGLIQEFVRVRAG 423
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R A+L L RTFK ++F+ +K+ AH+M I+ LLG+K ELHG+L+Q RL +
Sbjct: 424 KEAERSAMLVTLCRRTFKRRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRA 483
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L+ F+D+ D L+ATD+A+RGLDI+GV+TVINY MP L Y+HRVGRTARAG+GG +V+
Sbjct: 484 LQLFRDDAVDFLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVT 543
Query: 257 MAGEVDRKLVKQVIKN--AKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK+++ IK+ A++ V+HR++P E + + K+ ++
Sbjct: 544 LVGEADRKMLRAAIKHAAAEDQVRHRVLP----------------TEALQHWSDKLVELK 587
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E+ +L EEK ++ + KA+ ++ K + +++ + + P R WFQT +E+ A +T
Sbjct: 588 DEITHVLREEKEEKQMRKAEMELKKGQNLIEHQNEIFSRPARTWFQTGQEKKASQT 643
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 155/252 (61%), Gaps = 17/252 (6%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
RPP L + RIR+ +++A+L +L RTFK +IF TK+ AH + IL GL G+K
Sbjct: 383 RPPGLTEEVV-RIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLK 441
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A ELHGNLTQ RL+SL F+ +E D LIATDVAARGLDI GV+TVINY P ++ Y+H
Sbjct: 442 AAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVH 501
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLA 300
RVGRTARAG+ G +V+ + DR L+K + K + +K R+IP
Sbjct: 502 RVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIP----------------E 545
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + K+ ++ +E + +++ E+ +R L KA+ + +KAE ML+ + ++ P R WF
Sbjct: 546 QSIVKWSHIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFM 605
Query: 361 TKKERAAIKTSQ 372
T+KE+ + ++
Sbjct: 606 TEKEKKLVAQAE 617
>gi|341883149|gb|EGT39084.1| hypothetical protein CAEBREN_00981 [Caenorhabditis brenneri]
Length = 450
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 151/230 (65%), Gaps = 19/230 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR++++AALV RTF+ +T++FV TK++ M ILLGLLGIK G++ +LTQ
Sbjct: 82 IRIRAGRESDRESIVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 141
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ESL KFK E DVL++TD+A+RGLDI GV+TVIN MP S++ YIHRVGRTARAGK
Sbjct: 142 GQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 201
Query: 251 GGVSVSMAGEVDRKLVKQVIK-NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RKL+K+++ NA +K R++ P E+V+ YR +
Sbjct: 202 AGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAP----------------EVVEAYRRR 245
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
++ +E +Q+I E++ ++ L A+ ++K + L+ + +E R W
Sbjct: 246 IDELEETIQQIDEEDRAEKELRIAEASMAKTQHALETGEAGNER--RVWM 293
>gi|391340178|ref|XP_003744422.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Metaseiulus occidentalis]
Length = 721
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 155/243 (63%), Gaps = 25/243 (10%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+ +L ALV R F +H+++FV TK+ AH + ILL LLG++ ELH L Q
Sbjct: 367 RIRSQREGDREPILCALVTRYFGNHSIVFVQTKKLAHRIRILLELLGVQVEELHSGLNQT 426
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+E+L++F EE DVL+ TD+ ARGLDI+ V+TVINY +P +L+ Y+HRVGRTARAGK
Sbjct: 427 QRIEALKRFTLEEVDVLVTTDLTARGLDIKDVRTVINYTLPPTLQQYVHRVGRTARAGKV 486
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G SVS+ G+ +RK++K++I+ AK PVK RI+ P +++ K+ ++E
Sbjct: 487 GRSVSLVGDQERKVLKEIIRKAKTPVKQRIVDP----------------QVIKKFVERIE 530
Query: 312 AIEGEVQKILTEEKHDR---LLNKADEQVSKAEKML--KEKKPLH--ENPP--REWFQTK 362
++E ++ + EEK +R L+ +E+V K + L +E+ L N P R WFQT
Sbjct: 531 SVEESMRAVFEEEKIERNMKLIQTEEEEVDKIKDKLHDRERSKLRATNNDPVKRSWFQTP 590
Query: 363 KER 365
ER
Sbjct: 591 NER 593
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 156/241 (64%), Gaps = 23/241 (9%)
Query: 132 RIRKDTHLD---RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIR ++ D R A L +L RTFK T+IF +K AH M I+ GL+ + A ELHG+L
Sbjct: 432 RIRSNSKNDLKERTATLLSLCRRTFKQRTIIFFRSKALAHRMRIMFGLMELNAEELHGDL 491
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
+Q RL +L +FK++++D L+ATD+A+RGLDI+GV+TVIN+ +P+ +E Y+HRVGRTARA
Sbjct: 492 SQEQRLNALERFKNQKSDYLLATDLASRGLDIKGVETVINFDLPNQIEIYLHRVGRTARA 551
Query: 249 GKGGVSVSMAGEVDRKLVKQVIKNAK----NPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
G G SVS+ GE DRK++K ++K + + +KHRI+P +++
Sbjct: 552 GTSGRSVSLIGETDRKMLKNIVKRSSAQSTDSIKHRIVP----------------TDVLS 595
Query: 305 KYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
VE+++ ++ +IL EEK DR + A+ ++ K++ M++ + + P R WFQ++KE
Sbjct: 596 DVAELVESLQDQIDEILKEEKEDRAIRVAEMELQKSKNMIEHEDEIKSRPARTWFQSEKE 655
Query: 365 R 365
+
Sbjct: 656 K 656
>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
Length = 688
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 146/231 (63%), Gaps = 22/231 (9%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR++ +R++++ ALV R F DHTM+FV TKR +HI+LGLLGIK G+LH L+Q
Sbjct: 367 IRIRENHEHERESIVVALVTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQ 426
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+E+L +FK+ E D+LI+TD+AARGLDI GV TVIN +MP SL+ YIHRVGRTARAG+
Sbjct: 427 TQRVETLSRFKNAELDLLISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGR 486
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKN-PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G SVS+ G DRKL+K+++ K P+K R I G +++ Y +
Sbjct: 487 VGRSVSLFGAADRKLLKEIVATHKGAPLKQRRIDAG----------------VIEAYSKR 530
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ A+E +Q++ E K +R L A+E++ + E L+ R W Q
Sbjct: 531 IAALEESIQRVEEEFKAERALRLAEEELQRGEDKLQGNA-----QKRHWMQ 576
>gi|341897829|gb|EGT53764.1| hypothetical protein CAEBREN_24102 [Caenorhabditis brenneri]
Length = 485
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 156/240 (65%), Gaps = 23/240 (9%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR++++AALV RTF+ +T++FV TK++ M ILLGLLGIK G++ +LTQ
Sbjct: 117 IRIRAGRESDRESIVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 176
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ESL KFK E DVL++TD+A+RGLDI GV+TVIN MP S++ YIHRVGRTARAGK
Sbjct: 177 GQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGK 236
Query: 251 GGVSVSMAGEVDRKLVKQVIK-NAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RKL+K+++ NA +K R++ P E+V+ YR +
Sbjct: 237 AGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAP----------------EVVEAYRRR 280
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF----QTKKER 365
++ +E +Q+I E++ ++ L A+ ++K + L+ + +E R W Q +K+R
Sbjct: 281 IDELEETIQQIDEEDRAEKELRIAEASMAKTQHALETGEAGNER--RVWMMKESQIEKQR 338
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 34/306 (11%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTS-----FLFLLRPPVLLCL------------LCF 131
+ ++ + +V C ++ T +A+MTS ++ PV +C
Sbjct: 379 FTEEIQEIVRMCPRARQTMLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFV 438
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR + DR A+L AL R F T++F+ TK AH M IL GL GIKA ELHGNLTQ
Sbjct: 439 RIRPNREADRDAILLALCTRAFTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQ 498
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L KF+ D+L+ TDVAARG+D++GV+ VINY MP + Y+HRVGRTARAG+
Sbjct: 499 ERLDALEKFRQGAVDILLCTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQV 558
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G +V++ E R ++KQV ++ K R +P ++ +++AK++
Sbjct: 559 GRAVTLTSEYRRLIMKQVTRHCHGFAKSRAVPDS----------------VITQWKAKIQ 602
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+++ ++ ILTEEK ++ ++ +++ +A+ ++ + + P R WF ++KE+ I+ +
Sbjct: 603 SLQQDITHILTEEKVEKRMHNVEKEARRAQNLISYQDEITSRPARTWFVSEKEKKKIQEN 662
Query: 372 QAGEGL 377
A + L
Sbjct: 663 AAIQRL 668
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 146/243 (60%), Gaps = 16/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L R+R+ ++++A+L AL +TF +IF TK+ AH + IL GL G KA
Sbjct: 350 PAALTEEVLRLRRMREVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRLKILFGLAGFKAA 409
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ +E D LIATDVAARGLDI GV+TVINY P L YIHRV
Sbjct: 410 ELHGNLTQAQRLDALELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRV 469
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K + K A + ++ RI+ +
Sbjct: 470 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLRSRIVAE----------------QS 513
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V +L +E+ +R + KA+ + +KAE M+ K + P R WF T+
Sbjct: 514 IIKWSQMIENMENQVADVLQQEREERAIRKAEMEATKAENMIAHKDEIFSRPKRTWFVTE 573
Query: 363 KER 365
+E+
Sbjct: 574 REK 576
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 153/237 (64%), Gaps = 18/237 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +R A+L AL RTFK +IF +K+ AH+M I+ LL +K ELHG+LTQ
Sbjct: 423 RVRAGKESERSAILVALCKRTFKSGVIIFFRSKKLAHQMRIVFSLLYMKCAELHGDLTQE 482
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L++F+D D L+ATD+A+RGLDI+GV VINY MP L Y+HRVGRTARAGK
Sbjct: 483 QRLKALQQFRDGSVDFLMATDLASRGLDIKGVDIVINYDMPGQLAQYLHRVGRTARAGKK 542
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK--NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G SV++ GE DRK++K IK+ + V+HRI+P +E + K+ K
Sbjct: 543 GRSVTLVGEADRKMLKAAIKHGAGDDQVRHRIVP----------------SEAISKWSEK 586
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
+E ++ E+ ++L EEK ++ + +A+ ++ K E M++ + ++ P R WFQ+ K++A
Sbjct: 587 LELLKKEIAEVLEEEKEEKQMRQAEMELKKGENMMEHSEEIYSRPARTWFQSAKDKA 643
>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 146/231 (63%), Gaps = 19/231 (8%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R ALL AL RTF +IFV +K+ AH++ I+ GLLG+ AGELHG+L+Q R+++L F
Sbjct: 596 RPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDF 655
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+D + D L+ATD+A+RGLDI+GV+TVINY MP E Y+HRVGRTARAG+ G +V++ GE
Sbjct: 656 RDGKVDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGE 715
Query: 261 VDRKLVKQVI-KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK 319
DR+++K I K++ +KHRIIP A + K +E ++ EV
Sbjct: 716 ADRRMLKLAIKKSSAEQIKHRIIP----------------AAVASKMLETLEQLKPEVDA 759
Query: 320 ILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT--KKERAAI 368
+L EEK ++ L A+ ++ K E M + P R WFQT K++AA+
Sbjct: 760 VLREEKEEKALRIAEMELKKGENMAAHADEIFARPKRTWFQTGADKQQAAL 810
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/253 (41%), Positives = 150/253 (59%), Gaps = 17/253 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR+ ++++A+L AL +TF +IF TK+ AH + IL GL G KA
Sbjct: 361 PATLTEEVVRIRRMREVNQEAVLLALCSKTFTSRVIIFSGTKQAAHRLKILFGLAGFKAA 420
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ ++ D LIATDVAARGLDI GV+TVINY P L Y+HRV
Sbjct: 421 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRELTSYVHRV 480
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K + K A + +K RI+ +
Sbjct: 481 GRTARAGREGYAVTFVTDTDRSLLKAIAKRAGSKLKSRIVAE----------------QS 524
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V IL EE+ + + KA+ + +KAE M+ + + P R WF T+
Sbjct: 525 IAKWSQIIEQMEDQVAAILQEEREEIAIRKAEMEATKAENMIAHRDDILSRPKRTWFVTE 584
Query: 363 KERAAI-KTSQAG 374
KE+ + K S+A
Sbjct: 585 KEKKLVDKASKAS 597
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 173/291 (59%), Gaps = 35/291 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKD 136
+EI+ A S+ T +A+MT + L PV L + R+R +
Sbjct: 348 SEIIKACPKSRQTMLFSATMTDSVDELVKMSLNKPVRLFVDPRRTTARGLVQEFVRVRAE 407
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
+R +LL AL RTF ++F +K+ AH+M I+ +L +K ELHG+LTQ RL++
Sbjct: 408 KETERSSLLVALCQRTFTSGVIVFFRSKKLAHQMRIIFRMLDMKCEELHGDLTQEQRLQA 467
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L+ F+D + + L+ATD+A+RGLDI+G++TVINY MP+ Y+HRVGRTARAGK G S++
Sbjct: 468 LQLFRDGQVNFLMATDLASRGLDIKGIETVINYDMPNQAAQYLHRVGRTARAGKTGRSLT 527
Query: 257 MAGEVDRKLVKQVIKNAKNP--VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
+ GE DRK++K VIK++ + ++HR++P AE V K+ ++ ++
Sbjct: 528 LVGEADRKMLKSVIKHSASGENIRHRVVP----------------AESVAKWSKRIADLK 571
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E+ +L EEK ++ + +A+ ++ K + M+ +K + P R WFQ++KE+
Sbjct: 572 DEISMVLQEEKEEKQIRQAEMELKKGKNMIDHEKEIFSRPARTWFQSEKEK 622
>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 944
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 160/272 (58%), Gaps = 21/272 (7%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR+ DR+A+L +L+ RTFK T++F TK AH ++I+LG+ GI+A
Sbjct: 522 PQRLVQEFVRIRQSREQDREAILLSLLTRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAA 581
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNL RLE+L +FK + VL+ATD+AARGLDI GV TVIN+ MP S + YIHRV
Sbjct: 582 ELHGNLAMTQRLEALDRFKSGDVTVLVATDLAARGLDITGVHTVINFEMPRSADSYIHRV 641
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV--KHRIIPPGYPRLKTPSFPPPPLA 300
GRTARAG GG SV++ GE R ++K+V+K V K R +P
Sbjct: 642 GRTARAGCGGRSVTLIGESRRIVMKEVLKTQGEGVEIKSRAVPQ---------------- 685
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+D +R+K+E +E V+ ILTEEK ++ A + +A +++ +K +H P R+W
Sbjct: 686 SAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRAVNLVEHQKEIHARPARQWIV 745
Query: 361 TKKERAAIKTSQAGEGLAALILYLQSHSKTLV 392
+++ + + E +A L++ KT +
Sbjct: 746 SQQRKTELAEESKAEAVAQ---ALKAAGKTTI 774
>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 790
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR D R L AL RT ++ +IF +K AH+M I+ GL G+KA ELHGNLTQ
Sbjct: 431 RIRSDDS--RSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQE 488
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L FK D L+ATD+A+RGLDI+GV+TVINY MP L Y HRVGRTARAG+
Sbjct: 489 QRLQALNDFKASTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRK 548
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G S+S+ GE DRK++K IK A+ + V+HRIIP +E V + K+
Sbjct: 549 GRSISLVGEADRKMLKAAIKQAEADQVRHRIIP----------------SEAVTAMKEKL 592
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E + ++Q+IL EEK ++LL +AD ++ K + M++ + + P R WFQ+ KE+ A K
Sbjct: 593 EGFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEHEAEIFSRPARTWFQSGKEKQASKN 652
Query: 371 S 371
+
Sbjct: 653 A 653
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 166/276 (60%), Gaps = 19/276 (6%)
Query: 103 SKGTFQSNASMTSFLFLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVP 162
+ G+ +++ + + + P LL RIRK+ DR+A+L L RTF T++F
Sbjct: 320 ADGSIRTDETQGTLNKVAVPSSLLQEFV-RIRKEHEKDREAILLCLCTRTFHKRTIVFCR 378
Query: 163 TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRG 222
KR AH + I+ GLLG++ ELHGNLTQ RLE+L FK+E++D L+ATD+A RGLDI+G
Sbjct: 379 EKRRAHRLRIIFGLLGLRVEELHGNLTQAQRLEALENFKEEKSDFLLATDLAGRGLDIKG 438
Query: 223 VKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR--KLVKQVIKNAKNPVKHR 280
V V+N +P +L Y+HRVGRTARAG+ G +V++A + R ++K+V+++A + VK R
Sbjct: 439 VDVVVNLEVPRNLAEYVHRVGRTARAGRKGRAVTLADDSQRTKSMLKEVVRSAPDVVKRR 498
Query: 281 IIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKA 340
++PP + + R+++E +E +V ++ EE +R + AD + KA
Sbjct: 499 VVPP----------------DAIAAMRSRIEELEADVAAVMEEEAVERQMRIADMEGEKA 542
Query: 341 EKMLKEKKPLHENPPREWFQTKKERAAIKTSQAGEG 376
+++ ++ + P + WFQ+++E+ + S G
Sbjct: 543 RNLVEHEEDILARPKKTWFQSREEKLQARESNPSSG 578
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 158/261 (60%), Gaps = 21/261 (8%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK +IF TK+ AH + I+ GL G+
Sbjct: 373 LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGM 432
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L F+ +E D LIATDVAARG+DI GV+TVIN+ P ++ Y+
Sbjct: 433 KAAELHGNLTQAQRLEALELFRKQEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYL 492
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 493 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV------------AEKPV 540
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +E ++ I+ EEK +R KA+ +++KAE M+ K ++ P R WF
Sbjct: 541 AECAQ----LIEQLEDQISIIIREEKVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWF 596
Query: 360 QTKKER----AAIKTSQAGEG 376
T++E+ AA K S G+G
Sbjct: 597 ATEREKKLLVAAAKES-LGQG 616
>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
dendrobatidis JAM81]
Length = 741
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R A+LAAL RT+ T++F +K AH M I+ G LG+KA ELHGNLTQ
Sbjct: 409 IRVRGHKETSRPAILAALCSRTYTSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQ 468
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L F++++ L+ATD+A+RGLDI GVKTVINY MP S Y+HRVGRTAR
Sbjct: 469 LQRLEALELFREKKVGFLLATDLASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDL 528
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G +VS+ GE DR L+K IKN ++ VK+RI+P A +V+KY +
Sbjct: 529 AGRAVSLVGEADRALLKMAIKNTRDAVKNRIVP----------------ANVVEKYEGIL 572
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++ +++I EEK ++ L+ A+ Q+++A+ +L + + P R WFQ++KER
Sbjct: 573 AKLKDSIKEIYIEEKEEKELSSAELQITRAQNILGHQDEIMSRPARTWFQSEKER 627
>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818015|sp|P0CQ93.1|DRS1_CRYNB RecName: Full=ATP-dependent RNA helicase DRS1
gi|338818016|sp|P0CQ92.1|DRS1_CRYNJ RecName: Full=ATP-dependent RNA helicase DRS1
gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 808
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 153/241 (63%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR D R L AL RT ++ +IF +K AH+M I+ GL G+KA ELHGNLTQ
Sbjct: 449 RIRSDDS--RSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQE 506
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L FK D L+ATD+A+RGLDI+GV+TVINY MP L Y HRVGRTARAG+
Sbjct: 507 QRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRK 566
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SVS+ GE DRK++K IK A+ + V+HRIIP +E V + K+
Sbjct: 567 GRSVSLVGEADRKMLKAAIKQAEADQVRHRIIP----------------SEAVTAMKEKL 610
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E + ++Q+IL EEK ++LL +AD ++ K + M++ + + P R WFQ+ KE+ A K+
Sbjct: 611 EEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEHEAEIFSRPARTWFQSGKEKQASKS 670
Query: 371 S 371
+
Sbjct: 671 A 671
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 144/216 (66%), Gaps = 18/216 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR+ DR+ ++A LV R F DHT+IFV TKR +HI+LGLLG+K G+LH LTQ
Sbjct: 364 RIRESHETDRECIVAGLVTRNFPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSGLTQR 423
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+E+L +FK E DVL++TD+AARGLD+ GVKTVIN MP +L+ Y+HRVGRTARAG+
Sbjct: 424 QRVEALFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTARAGRV 483
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP--VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RK++K++I + K +K R+I A +V+ Y+ +
Sbjct: 484 GRSISLVGESERKILKEIIASNKGGGCLKQRLIS----------------ANVVEAYKNR 527
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK 345
+E++E +++I EE+ +R L A E++ + + L+
Sbjct: 528 IESLEESIERIRQEEEVERTLRLAQEELQRGKTKLE 563
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 169/290 (58%), Gaps = 35/290 (12%)
Query: 95 EIVVAYCWSKGTFQSNASMTS------FLFLLRPPVL-----------LCLLCFRIRKDT 137
EI+ A S+ T +A+MT + L RP L L R+R
Sbjct: 356 EIIQACPTSRQTMLFSATMTDDVDALVRMSLNRPVKLFVDPKRSTARGLIQEFVRVRAGK 415
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
+R ALL AL RTFK ++F +K+ AH+M ++ G+LG+KA ELHG+LTQ RL +L
Sbjct: 416 EAERAALLVALCKRTFKQGVIVFFRSKKLAHQMRVVFGILGMKAEELHGDLTQEQRLRAL 475
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+ F+D D L+ATD+A+RGLDI+G++ V+NY MP L Y+HRVGRTARAGK G SV++
Sbjct: 476 QLFRDGAVDFLMATDLASRGLDIKGIEAVVNYDMPGQLAQYLHRVGRTARAGKKGRSVTL 535
Query: 258 AGEVDRKLVKQVIKNAK--NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
GE DRK++K IK+A + V+HR IP ++ V + ++ I
Sbjct: 536 VGEADRKILKAAIKHASDVDKVRHRTIP----------------SDQVSIWAKRLAEIND 579
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E+ ++L EEK ++ L A+ ++ K E M++ +K + P R WFQ++KE+
Sbjct: 580 EITEVLKEEKEEKALRLAERELKKGENMIEHEKEIFSRPARTWFQSEKEK 629
>gi|312070907|ref|XP_003138363.1| hypothetical protein LOAG_02778 [Loa loa]
Length = 463
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 144/216 (66%), Gaps = 18/216 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR+ DR+ ++A LV R F DHT+IFV TKR +HI+LGLLG+K G+LH LTQ
Sbjct: 143 RIRESHETDRECIVAGLVTRNFPDHTIIFVKTKRTCRRLHIVLGLLGVKVGQLHSGLTQR 202
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+E+L +FK E DVL++TD+AARGLD+ GVKTVIN MP +L+ Y+HRVGRTARAG+
Sbjct: 203 QRVEALFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPSTLKQYVHRVGRTARAGRV 262
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP--VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S+ GE +RK++K++I + K +K R+I A +V+ Y+ +
Sbjct: 263 GRSISLVGESERKILKEIIASNKGGGCLKQRLIS----------------ANVVEAYKNR 306
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLK 345
+E++E +++I EE+ +R L A E++ + + L+
Sbjct: 307 IESLEESIERIRQEEEVERTLRLAQEELQRGKTKLE 342
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 143/230 (62%), Gaps = 17/230 (7%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
+R + R L L RT + +IF +K AH+M ++ GL G+ A ELHGNLTQ
Sbjct: 434 VRVRSEETRSPALLTLCKRTVHEKAIIFFRSKALAHQMRVVFGLCGLVAAELHGNLTQEQ 493
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L FK D L+ATD+A+RGLDI+GV+TVINY MP L Y+HRVGRTARAG+ G
Sbjct: 494 RLVALNDFKAGRVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKG 553
Query: 253 VSVSMAGEVDRKLVKQVIKNA-KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
S+S+ GE DRK++K V+K + K+ ++HRIIPP E V AK++
Sbjct: 554 RSISLVGEPDRKMLKAVMKRSDKDQIRHRIIPP----------------EAVQAMSAKLD 597
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
++ E+ +L EE+ ++LL +AD ++ K + M++ + ++ P R WFQ+
Sbjct: 598 ELKEEISAVLAEEREEKLLRQADMELRKGQNMVEHEAEIYSRPARTWFQS 647
>gi|357459393|ref|XP_003599977.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355489025|gb|AES70228.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 828
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 146/236 (61%), Gaps = 16/236 (6%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
L R+R+ ++++A+L A+ +TF +IF TK+ AH + I+ GL G+KA ELHGNL
Sbjct: 439 LVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNL 498
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL +L +F+ ++ D L+ATDVAARGLDI GV+TVIN+ P L Y+HRVGRTARA
Sbjct: 499 TQAQRLGALEEFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARA 558
Query: 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G+ G +V+ + DR L+K + K A + +K RI+ + + K+
Sbjct: 559 GRAGSAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA----------------EQSILKWSQ 602
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
+E +E ++ ++L EE+ + +L KA+ + +KAE M+ K + P R WF T+KE
Sbjct: 603 VIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEKE 658
>gi|392578431|gb|EIW71559.1| hypothetical protein TREMEDRAFT_27480 [Tremella mesenterica DSM
1558]
Length = 786
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 160/260 (61%), Gaps = 23/260 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RI+ D R L AL RT ++ +IF +K AH+M ++ GL G+KA ELHGNL+Q
Sbjct: 433 RIKSDDT--RSPSLLALCKRTVRERCIIFFRSKALAHQMRVVFGLCGLKAAELHGNLSQE 490
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +L +FK + D L+ATD+A+RGLDI+GV+TVINY MP L Y HRVGRTARAG+
Sbjct: 491 QRLHALEEFKLGKVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRK 550
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G S+++ GE DRKL+K VIK ++ + ++HRIIP +E V +
Sbjct: 551 GRSITLVGEADRKLLKAVIKQSEADEIRHRIIP----------------SEAVTAMSKTL 594
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
+ ++ E+Q++L EEK ++ L +AD +++K E M+ ++ + P R WFQ++KE+ A K
Sbjct: 595 DEMKDEIQEVLKEEKEEKALRQADMEITKGENMIAHEEEIFSRPARTWFQSEKEKLASKN 654
Query: 371 SQAGEGLAALILYLQSHSKT 390
+ G AA S KT
Sbjct: 655 A----GKAAYTSGFPSDPKT 670
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 156/257 (60%), Gaps = 17/257 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR D++A++ +L R+ K T+IF TK EAH + IL GL G+K+
Sbjct: 331 PSTLTEEVIRIRAGHEGDKEAIVLSLCSRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSA 390
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RLE+L F+ +E D LIATDVAARGLDI GV++VIN P ++ Y+HRV
Sbjct: 391 ELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRV 450
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G SV++ E DR L+K V K A + ++ R++ A
Sbjct: 451 GRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKRVVA----------------ATS 494
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ +R ++E +E ++ +IL +E+ ++ L KA+ + +KA+ M+ + + P + WFQ++
Sbjct: 495 IASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYEAEIFARPKKTWFQSQ 554
Query: 363 KERAAI-KTSQAGEGLA 378
+++ I K S A G A
Sbjct: 555 QDKTRIAKVSPASYGPA 571
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 151/246 (61%), Gaps = 16/246 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L RIR D++A++ +L R+ K T+IF TK EAH + IL GL G+K+
Sbjct: 329 PSTLTEEVIRIRAGHEEDKEAIVLSLCSRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSA 388
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RLE+L F+ +E D LIATDVAARGLDI GV++VIN P ++ Y+HRV
Sbjct: 389 ELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRV 448
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G SV++ E DR L+K V K A + ++ R++ A
Sbjct: 449 GRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKRVVA----------------ATS 492
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ +R ++E +E ++ +IL +E+ ++ L KA+ + +KA+ M+ + + P + WFQ++
Sbjct: 493 IASWRERIEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDYEAEIFARPKKTWFQSQ 552
Query: 363 KERAAI 368
+++ I
Sbjct: 553 QDKTRI 558
>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 495
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 153/249 (61%), Gaps = 17/249 (6%)
Query: 132 RIRKDTH-LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR ++R+ +L AL+ RTF ++F TK AH + I+ GL GIK ELHGNLTQ
Sbjct: 250 RIRAGNEGVNREGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIKCTELHGNLTQ 309
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L F++ DVL+ATD+AARGLDI GV+ VIN+ MP ++ Y+HR+GRTARAG+
Sbjct: 310 VQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRIGRTARAGR 369
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPR----------LKTPSFPPPPLA 300
GG S ++ GE R L+K+VIK+A+ K R G + +++ + PPP +A
Sbjct: 370 GGNSCTLIGEGRRYLMKEVIKDAEE--KSRRASAGRKQTQDSASTSGVIRSRTIPPPVVA 427
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
V AK+ +E V+++L E R+ A+ + +A+ +++ + + P +EWF
Sbjct: 428 HFV----AKINFLEQHVREVLDAEAVARIDRIAEMEAMRAQNIIEHSSEIKQRPQKEWFA 483
Query: 361 TKKERAAIK 369
+ KER ++K
Sbjct: 484 SSKERISVK 492
>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
Length = 924
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 156/253 (61%), Gaps = 24/253 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +++A++ A+ R+F T++F +K+ AH ++ GL G+KA ELHG+L Q
Sbjct: 565 RVRPQREKEKEAIVLAVCKRSFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQL 624
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RLESL FK+ D L+ATD+A+RGLDI GV+TV+N MP++L YIHRVGRTARAG+
Sbjct: 625 QRLESLEAFKEGRVDFLLATDLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRA 684
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+S+ E +RKL+K+++K+A P+ R IP +++++K+ K+
Sbjct: 685 GRSLSLVCEGERKLLKEIVKHATVPLSSRSIP----------------SDVIEKFSTKIR 728
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ------TKKER 365
++ I+ EK +++L +A+ + +KA M++ +K ++ P R WFQ T KE
Sbjct: 729 GASKDIAAIMKAEKEEKMLLQAEMEAAKASNMMEHEKEIYSKPARTWFQDALAKKTSKEN 788
Query: 366 AAIKTSQAGEGLA 378
+ K + AG +A
Sbjct: 789 S--KVAHAGGAVA 799
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 154/235 (65%), Gaps = 17/235 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +R ALL AL RT + +IF +K+ AH+ ++ GL G+KA ELHGNLTQ
Sbjct: 408 RVRAGKEAERPALLVALCQRTARKGVIIFFRSKKLAHQFRVVFGLCGLKALELHGNLTQE 467
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +L KF+ E D L+ATD+A+RGLDIRG++TVINY MP +E Y+HRVGRTARAGK
Sbjct: 468 QRLNALTKFRSGEADYLLATDLASRGLDIRGIETVINYDMPGQIEQYVHRVGRTARAGKK 527
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G S+++ GE DRK++K IK ++ + ++HR++P +E+V K+
Sbjct: 528 GRSITLVGEADRKMLKAAIKRSEADKIRHRVVP----------------SEVVASVVEKL 571
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E ++GEV+++L EEK ++LL A+ ++ K + M+ ++ + P R WFQT KE+
Sbjct: 572 EELKGEVEEVLKEEKEEKLLRTAEMELKKGQNMITHEEEIFGRPKRTWFQTDKEK 626
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 146/247 (59%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + + + +IF K+ AH I+ GLLG+ ELHG++ Q
Sbjct: 506 RLRPGREEKRMGYLVHLCKKLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMNQT 565
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+
Sbjct: 566 QRIQSVEDFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRS 625
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
GV+V++A E DRK+VK +K K + RII A D ++
Sbjct: 626 GVAVTLAAEPDRKVVKAAVKAGKAQGAKISSRIIE----------------AADADGWQD 669
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KV+ +EGEV+ ++ EEK +++L +AD QV K E M++ + + P R WF+T+K++ A
Sbjct: 670 KVDELEGEVEAVMQEEKEEKVLWQADMQVRKGENMMRHEDEIKARPRRTWFETEKDKKAA 729
Query: 369 KTSQAGE 375
+ + E
Sbjct: 730 REAGRAE 736
>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 643
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 141/225 (62%), Gaps = 15/225 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L A+ + +K+ T+IF TKR+ H M I+ GL G+K ELHG+LTQ R+++ F
Sbjct: 419 REAALLAIAAKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDF 478
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ + L+ATD+A+RGLDI+GVK VIN+ +P + YIHRVGRTARAG G+S+++ +
Sbjct: 479 KEGKYQYLMATDLASRGLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLD 538
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
+ K +K+++K K+ + ++ E + KY+ K++ +E EV K+
Sbjct: 539 AELKTLKKMLKENKDKMMEKVSLS---------------VETLQKYKEKIQNVEREVVKV 583
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
L EE+ +R L KA+ ++ KAE M+K K + P + WFQT ER
Sbjct: 584 LEEEQAERQLRKAEMELQKAENMIKHKDEIMNKPKKTWFQTNHER 628
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 152/246 (61%), Gaps = 16/246 (6%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK +IF TK+ AH + I+ GL G+
Sbjct: 378 LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGM 437
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P ++ Y+
Sbjct: 438 KAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYL 497
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 498 HRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIV------------AEKPV 545
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +EG++ I+ EE+ +R KA+ +++KAE M+ K ++ P R WF
Sbjct: 546 AECA----RLIEQLEGQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWF 601
Query: 360 QTKKER 365
T++E+
Sbjct: 602 ATEREK 607
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 152/246 (61%), Gaps = 16/246 (6%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK +IF TK+ AH + I+ GL G+
Sbjct: 394 LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGM 453
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P ++ Y+
Sbjct: 454 KAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYL 513
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 514 HRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIV------------AEKPV 561
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +EG++ I+ EE+ +R KA+ +++KAE M+ K ++ P R WF
Sbjct: 562 AECA----RLIEQLEGQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWF 617
Query: 360 QTKKER 365
T++E+
Sbjct: 618 ATEREK 623
>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230863|emb|CCD77280.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 625
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 63/314 (20%)
Query: 97 VVAYCWSK-GTFQSNASMTS-----FLFLLRPPVLLCL-------LCF-----RIRKDTH 138
++ +C +K T +A+MT + LR PV + L C RIR
Sbjct: 298 IIKFCSTKRQTLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHRE 357
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
DR+A++ AL+ R F+ T++F+PTK++ H+MHI+LGLLG+ ELHGN+TQ RLE+L+
Sbjct: 358 DDRRAIVIALLMRHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRLEALK 417
Query: 199 KFK--------------DEET----------DVLIATDVAARGLDIRGVKTVINYRMPHS 234
+F D+ T D+L+ATD+A+RGLDI V+TVINY +P +
Sbjct: 418 RFSYVGTSDECKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINYTLPQT 477
Query: 235 LEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
++ Y+HRVGRTAR G +VS+ GE DRK++K+++K A PVK R+I
Sbjct: 478 MKQYVHRVGRTARIMNVGRAVSLVGEDDRKVMKEIMKQAPYPVKARVIA----------- 526
Query: 295 PPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK----PL 350
++++ Y++K+ +E + KIL E +R L A Q+SKAE+++ K PL
Sbjct: 527 -----SDVIATYQSKITRLEPIIGKILAAEAEERELRAAQSQLSKAEELVSCMKSGTTPL 581
Query: 351 HENPPR-EWFQTKK 363
R +WF +K
Sbjct: 582 SCVERRVDWFAERK 595
>gi|405120234|gb|AFR95005.1| ATP-dependent RNA helicase DRS1 [Cryptococcus neoformans var.
grubii H99]
Length = 813
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 155/258 (60%), Gaps = 36/258 (13%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ- 190
RIR D R L AL RT ++ +IF +K AH+M I+ GL G+KA ELHGNLTQ
Sbjct: 431 RIRSDDS--RSPSLLALCKRTIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQE 488
Query: 191 ----PS------------RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHS 234
PS RL++L FK D L+ATD+A+RGLDI+GV+TVINY MP
Sbjct: 489 QGSLPSKYRIGVMLTSSQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQ 548
Query: 235 LEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPS 293
L Y HRVGRTARAG+ G S+S+ GE DRK++K IK A+ + V+HRIIP
Sbjct: 549 LAQYTHRVGRTARAGRKGRSISLVGEADRKMLKAAIKQAEADQVRHRIIP---------- 598
Query: 294 FPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHEN 353
+E V + K+E + ++Q+IL EEK ++LL +AD ++ K + M++ + +
Sbjct: 599 ------SEAVTAVKEKLEGFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEHEAEIFSR 652
Query: 354 PPREWFQTKKERAAIKTS 371
P R WFQ+ KE+ A K++
Sbjct: 653 PARTWFQSGKEKQASKSA 670
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 158/261 (60%), Gaps = 21/261 (8%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK +IF TK+ AH + I+ GL G+
Sbjct: 373 LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGM 432
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L F+ +E D LIATDVAARG+DI GV+TVIN+ P ++ Y+
Sbjct: 433 KAAELHGNLTQAQRLEALELFRKQEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYL 492
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPL 299
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P+
Sbjct: 493 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV------------AEKPV 540
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +E +E ++ I+ EE+ +R KA+ +++KAE M+ K ++ P R WF
Sbjct: 541 AECAQ----LIEQLEDQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTWF 596
Query: 360 QTKKER----AAIKTSQAGEG 376
T++E+ AA K S G+G
Sbjct: 597 ATEREKKLLVAAAKES-LGQG 616
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 40/302 (13%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
EI+ S+ T +A+MTS + L PV L + R+R
Sbjct: 421 NEILTTLPKSRQTMLFSATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPG 480
Query: 137 THLDRKALLAALVCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
R LA L C+TF + +IF K+EAH I+ GLLG+ ELHG++ Q R+
Sbjct: 481 REDKRMGYLAYL-CKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRIS 539
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+ G +V
Sbjct: 540 SVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAV 599
Query: 256 SMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
++A E DRK+VK +K K + RII P DK + +++
Sbjct: 600 TLAAEGDRKVVKAAVKAGKAQGAKITSRIIAPAD----------------ADKLQEEIDG 643
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQ 372
+E E+ +I+ EEK +R L +A+ QV K E +++ + + P R WF+T+ ++ K Q
Sbjct: 644 MEDEIDEIMQEEKEERQLAQAEMQVKKGENLIEHEAEIKSRPKRTWFETEHDKK--KAKQ 701
Query: 373 AG 374
AG
Sbjct: 702 AG 703
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 145/230 (63%), Gaps = 22/230 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + ++F K++AHE I+ +LG+ ELHG+++Q R+ES+ F+D + +
Sbjct: 490 LCKTLYTERVIVFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIESVEAFRDGKVNY 549
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDIRGV TVINY P SLE Y+HRVGRTARAG+ GV++++A E DRK+VK
Sbjct: 550 LLATDLASRGLDIRGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKVVK 609
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K V RI+ AE DK +A+++ +E E+++I+ EE
Sbjct: 610 AAVKAGKAQGAKVTSRIVE----------------AEKADKLQAEIDGMEQEIKEIMREE 653
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAG 374
K ++ +A+ QV K E M++ + + P R WF+T+ E+ K +AG
Sbjct: 654 KEEKHFAQAEMQVRKGENMIEHEAEIKSRPKRTWFETEHEKG--KAKEAG 701
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 149/237 (62%), Gaps = 20/237 (8%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ +L AL+ RTFK T++F TK AH + IL GL GIK ELHGNL+Q RL +L +
Sbjct: 235 NREGMLLALLTRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEE 294
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+ + DVL+ATD+AARGLDI VKTVIN+ MP + Y+HR+GRTARAG+GG S ++ G
Sbjct: 295 FRKGDVDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIG 354
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPG--------YPRLKTPSFPPPPLAEIVDKYRAKVE 311
E R L+K++IK+A+ VK++ G +++ + PP + V AK++
Sbjct: 355 EGRRHLMKELIKDAE--VKNKRHTTGDTAKSSFESGVIRSRTIPPAVMGHFV----AKIQ 408
Query: 312 AIEGEVQKILTEE---KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E V ++ E K DRL A+ +V KA+ +++ + P REWF ++K++
Sbjct: 409 SLETHVDEVFQAEAIAKMDRL---AEMEVIKAQNIIQHSDEIKARPQREWFASEKQK 462
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 150/255 (58%), Gaps = 19/255 (7%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 497 VTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAE 556
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 557 LHGSMSQEQRIKSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVG 616
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K+ + R+I P
Sbjct: 617 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPA--------------- 661
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + AK E + EV+++L+EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 662 -VADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 720
Query: 361 TKKERAAIKTSQAGE 375
T++++ A + A E
Sbjct: 721 TERDKKAARKLGAAE 735
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 23/247 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R LA L C+TF + +IF K+EAH I+ GLLG+ ELHG++ Q
Sbjct: 479 RLRPGREDKRMGYLAHL-CKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQ 537
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+
Sbjct: 538 SQRISSVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGR 597
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G +V++A E DRK+VK +K K + R+I P DK +
Sbjct: 598 KGTAVTLAAEGDRKVVKAAVKAGKAQGAKITSRVIAPAD----------------ADKLQ 641
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+++ +E E+ +I+ EEK +R L +A+ QV K E +++ + + P R WF+T+ ++
Sbjct: 642 EEIDGMEDEIDEIMQEEKEERQLAQAEMQVKKGENLIEHEAEIKSRPKRTWFETEHDKK- 700
Query: 368 IKTSQAG 374
K QAG
Sbjct: 701 -KAKQAG 706
>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
Length = 798
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 142/225 (63%), Gaps = 20/225 (8%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + +IF K+ AHE I+ GLLG+ ELHG++ Q R+ S+ F+D + +
Sbjct: 512 ICKTLYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNF 571
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P +LE YIHR+GRTARAG+ GV++++A E DRK+VK
Sbjct: 572 LLATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVK 631
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
++ K + RII A DK++ +++ +EGE+++I+ EE
Sbjct: 632 AAVRAGKAQGAKITSRIIE----------------ASDADKWQDQIDEMEGEIKEIMQEE 675
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
K ++ L + + QV K E M+K ++ + P R WF+T+ ++ A K
Sbjct: 676 KEEKQLQQVEMQVKKGENMIKYEEEIASRPKRTWFETQDDKRAAK 720
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 150/255 (58%), Gaps = 19/255 (7%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 524 VTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAE 583
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 584 LHGSMSQEQRIKSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVG 643
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K+ + R+I P
Sbjct: 644 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPA--------------- 688
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + AK E + EV+++L+EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 689 -VADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 747
Query: 361 TKKERAAIKTSQAGE 375
T++++ A + A E
Sbjct: 748 TERDKKAARKLGAAE 762
>gi|340508005|gb|EGR33819.1| hypothetical protein IMG5_036350 [Ichthyophthirius multifiliis]
Length = 347
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 146/231 (63%), Gaps = 15/231 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L A+ + +KD T+IF TK++ H M I+ GL + ELHGN+TQ R+++ F
Sbjct: 120 REASLLAVAAKFYKDKTVIFFKTKKQCHRMAIIFGLFKLSVCELHGNMTQNQRIQAFTDF 179
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ + L+ATD+AARGLDI+G+K VINY +P + YIHRVGRTARAGK GVS+++ E
Sbjct: 180 KEGKYSYLMATDLAARGLDIQGLKAVINYELPTEVSRYIHRVGRTARAGKEGVSLTLGTE 239
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
+ K +K+++K ++ +K S P +I+ Y+ K++ IE E++++
Sbjct: 240 QELKSLKKMLKENQDSA-----------MKKFSIPE----DILKSYQDKIKGIEREIERV 284
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+ EE+ +R L KA+ ++ KAE ++K + + P + WFQT ++R I+ +
Sbjct: 285 IDEEQAERQLRKAEMEMKKAENLIKFQDDILNKPKKTWFQTNQQRNQIREA 335
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 153/248 (61%), Gaps = 15/248 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
R+R R A+L +C+TF +IF K AH+M I+ GL+G+ A E+HG+L+
Sbjct: 453 IRVRPQREQLRPAMLVH-ICKTFFHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLS 511
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R+ +L F+D + D L+ATDVA+RGLDI+GV+ VINY P S E Y+HRVGRTARAG
Sbjct: 512 QEQRVRALEDFRDGKVDYLLATDVASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAG 571
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
+ G ++S+ GE DRK++K V+K+++N +H + + FP V+ +
Sbjct: 572 RSGRAISLVGENDRKVIKDVLKSSEN--QHDNVVS-----RNLDFPR------VEAIGKE 618
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+E +E V++++ EEK +R + A+ + K E +LK + + P R WFQT+KE+ A K
Sbjct: 619 LEELEDTVKQVMEEEKQERHIKIAERDLKKGENILKHQDEIKARPARTWFQTEKEKKASK 678
Query: 370 TSQAGEGL 377
T+ G+ +
Sbjct: 679 TAATGKAV 686
>gi|152013519|sp|A4QYM6.1|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
gi|440472865|gb|ELQ41697.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae Y34]
gi|440482949|gb|ELQ63394.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae P131]
Length = 790
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 150/260 (57%), Gaps = 23/260 (8%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + + +IF K+ AH I+ GLLG+ E
Sbjct: 470 VTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAE 529
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVG
Sbjct: 530 LHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVG 589
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G ++++A E DRK+VK +K K + RII A
Sbjct: 590 RTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIID----------------A 633
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
D ++AK++ +E EV+ ++ EEK +++L +AD ++ K E M++ + + P R WF+
Sbjct: 634 ADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFE 693
Query: 361 TKKERAAIKTSQAGEGLAAL 380
T+K++ A + + G AAL
Sbjct: 694 TEKDKKAAREA----GRAAL 709
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 150/260 (57%), Gaps = 23/260 (8%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + + +IF K+ AH I+ GLLG+ E
Sbjct: 479 VTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAE 538
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVG
Sbjct: 539 LHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVG 598
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G ++++A E DRK+VK +K K + RII A
Sbjct: 599 RTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIID----------------A 642
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
D ++AK++ +E EV+ ++ EEK +++L +AD ++ K E M++ + + P R WF+
Sbjct: 643 ADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFE 702
Query: 361 TKKERAAIKTSQAGEGLAAL 380
T+K++ A + + G AAL
Sbjct: 703 TEKDKKAAREA----GRAAL 718
>gi|339250128|ref|XP_003374049.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 693
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 25/239 (10%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK+ R+A LAAL+ R+F ++F TK H + +LLGLLGI+ ELHGNL+Q
Sbjct: 375 RIRKERECSREASLAALLKRSFTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQA 434
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+++L +FK DVL+ATDVAARG+D++GVKTVINY+MPH + Y+HRVGRTARAG+
Sbjct: 435 QRIDALEQFKKGVVDVLVATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRS 494
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G +VS E DRKLVK+++K+ +K RI+ + V+ + ++
Sbjct: 495 GCAVSFVSEDDRKLVKEIVKHCPTSIKRRILNK----------------DAVESCQRMID 538
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKE---------KKPLHENPPREWFQT 361
+ E+ +I+ EEK +R L+ A++Q+++A+ L+ + NP R WFQT
Sbjct: 539 ELLPEIDRIVEEEKQERQLSIAEKQIAQAKAKLENDHHQAGATTSSKANNNPQRVWFQT 597
>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 1617
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 153/266 (57%), Gaps = 17/266 (6%)
Query: 126 LCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELH 185
L R+R+ R L L ++DH +IF KR HE I+ GLLG+ ELH
Sbjct: 481 LTQAFVRLRQGREDRRLGYLVELCTTLYRDHAIIFFREKRSIHEARIVFGLLGLTCEELH 540
Query: 186 GNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRT 245
GN+ Q R+ SL F+ E L+A+D+A+RGLDI+GV+TVINY +P +L+ YIHR+GRT
Sbjct: 541 GNIKQAERIASLESFRRGEVQFLLASDLASRGLDIKGVETVINYEVPKNLDDYIHRIGRT 600
Query: 246 ARAGKGGVSVSMAGEVDRKLVKQVIKNAK------------NPVKHRIIP-PGYPRLKTP 292
ARAG+ G++V++ E DRK VK+V+K + V +P P R+++
Sbjct: 601 ARAGRRGLAVTIVSEKDRKFVKEVVKAMRAGGDKEQKEKKGKTVGETGLPMPQQVRIRSQ 660
Query: 293 SFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHE 352
P D+++AK++A+ +V +I+ EE+ R + +A+ +V++ E +LK + +
Sbjct: 661 QVDPA----AADRWQAKIDAMAEDVAEIVAEERQVRAMAQAEMEVTRGENLLKHRDEIMA 716
Query: 353 NPPREWFQTKKERAAIKTSQAGEGLA 378
P R WF++ +++ A + Q E A
Sbjct: 717 RPKRTWFESGRDKEAKRQLQRREAQA 742
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 148/247 (59%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + ++F KREAH + I+ GLLG+KA ELHG+++Q
Sbjct: 522 RLRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQE 581
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 582 QRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 641
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K K + R++ P + D++ A
Sbjct: 642 GRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPA----------------VADEWAA 685
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K + +E E++++L EEK ++ + +A+ QV+K E M+K + + P R WF+T++++ A
Sbjct: 686 KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENMIKHEAEIMSRPKRTWFETERDKRAA 745
Query: 369 KTSQAGE 375
+ A E
Sbjct: 746 RKLGATE 752
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 152/255 (59%), Gaps = 22/255 (8%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L R+R ++A L ALV RTF +++F TK++AH + I++GL GI A
Sbjct: 393 PGTLTEEVLRLRPGAASMKEAHLMALVNRTFTKKSIVFSRTKQQAHRLKIVMGLAGIVAA 452
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHG+L+Q RL +L F+ E L+ATDVAARGLDI GV VI+Y P +L Y+HRV
Sbjct: 453 ELHGDLSQTQRLAALESFRVGEASHLVATDVAARGLDIAGVDAVISYDAPRTLASYLHRV 512
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAGK G +++ E DRKLVK V K +L S P +
Sbjct: 513 GRTARAGKRGTALTFMEESDRKLVKAVSKRG-------------SKLVARSLPN----HV 555
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
V+++ AK+EA+ +++++ EE+ ++ LN+A+ + KAE ++ K +H P + WFQ++
Sbjct: 556 VEEWHAKIEAMADQIKEVEYEERAEKHLNRAEMEAIKAENLMTHSKEIHARPAKTWFQSE 615
Query: 363 KE-----RAAIKTSQ 372
++ +A++K S+
Sbjct: 616 RQKKTLNKASLKASE 630
>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351656|sp|Q09903.1|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe]
Length = 754
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 150/249 (60%), Gaps = 13/249 (5%)
Query: 125 LLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGEL 184
LL R+R L R A+L L F T+IF +K AH+M ++ GLL + A E+
Sbjct: 475 LLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEI 534
Query: 185 HGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGR 244
HG+L+Q R+ +L F+D + + L+ATDVA+RG+DI+G++ VINY P + E Y+HRVGR
Sbjct: 535 HGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGR 594
Query: 245 TARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
TARAG+ G ++++AGE DRK++K V KN+ + +++ K V+
Sbjct: 595 TARAGRSGRAITLAGEGDRKVLKGVFKNS-SAQNTKLVNRNLDFNK------------VE 641
Query: 305 KYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
K+ ++E +E VQK+L EEK +R L A+ + K E ++K + P R WFQ++K+
Sbjct: 642 KFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGDEIRSRPARTWFQSEKD 701
Query: 365 RAAIKTSQA 373
+ A K S+A
Sbjct: 702 KQASKASEA 710
>gi|397630447|gb|EJK69772.1| hypothetical protein THAOC_08936 [Thalassiosira oceanica]
Length = 544
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 8/244 (3%)
Query: 132 RIRKDTH-LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR ++R+ +L AL+ RTF TM F TK AH + I+ GL GIK ELHGNLTQ
Sbjct: 143 RIRSGNEGVNREGMLLALLTRTFTSKTMCFFDTKVAAHRLMIICGLCGIKCAELHGNLTQ 202
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RLE+L F++ DVL+ TD+AARGLDI V+ V+N+ MP + Y+HR+GRTARAG+
Sbjct: 203 TQRLEALEAFREGSVDVLLCTDLAARGLDITCVEAVVNFEMPSQVATYVHRIGRTARAGR 262
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPV-KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
GG + ++ GE R L+K+V+K+A+ K + G R +T P A +V + AK
Sbjct: 263 GGKACTLIGEGRRYLMKEVMKDAEEKARKQKEGTAGVIRSRT--IP----AAVVSHFVAK 316
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ ++E ++++L E RL + ++ +A+ +++ + P +EWF T K++ +IK
Sbjct: 317 INSLEDNIKEVLDAEAVARLDRITEMEMMRAQNIIEHSDEIKSRPQKEWFATSKQKISIK 376
Query: 370 TSQA 373
A
Sbjct: 377 EKTA 380
>gi|358055869|dbj|GAA98214.1| hypothetical protein E5Q_04897 [Mixia osmundae IAM 14324]
Length = 835
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 154/251 (61%), Gaps = 20/251 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRKDT R+A L A+ RTF+ T+IF +K+ AH ILLGL G+ A ELHG+L+Q
Sbjct: 490 LRIRKDTPASREAALLAICQRTFRGQTIIFFRSKQAAHRARILLGLCGLAAEELHGDLSQ 549
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RL+SL+ FK+ L ATD+A+RGLDI+GV++VIN+ MP S + Y+HRVGRTARAG
Sbjct: 550 EQRLQSLQNFKEGTATHLCATDLASRGLDIKGVQSVINFEMPGSFDIYLHRVGRTARAGN 609
Query: 251 GGVSVSMAGEVDRKLVKQVIKNA-KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G ++++ G+ DRK+VKQ K A + K R++PP E++ + +
Sbjct: 610 AGRALTLVGDSDRKMVKQATKAAPADRFKQRVLPP----------------EVIKEATDR 653
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
V ++ E+ ++ EE+ ++ + +A+ + K + +++ K+ + P R WFQ++ ++ K
Sbjct: 654 VTELQAEINTVMQEEREEKEIRRAEMEAKKGQNLIEYKQEIAGRPRRTWFQSEGDKKKAK 713
Query: 370 ---TSQAGEGL 377
T+Q G
Sbjct: 714 DAGTAQYNSGF 724
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 146/255 (57%), Gaps = 19/255 (7%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 1005 VTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAE 1064
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 1065 LHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVG 1124
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K + R++ P
Sbjct: 1125 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKAQGAKIVSRVVDPS--------------- 1169
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + +K + +E E+ +L EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 1170 -VADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 1228
Query: 361 TKKERAAIKTSQAGE 375
T++E+ K A E
Sbjct: 1229 TEREKRVAKKIGAAE 1243
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 148/247 (59%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + ++F KREAH + I+ GLLG+KA ELHG+++Q
Sbjct: 533 RLRPGREDKRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQE 592
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 593 QRIKSVENFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 652
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K K + R++ P + D++ A
Sbjct: 653 GRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVVDPA----------------VADEWAA 696
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K + +E E++++L EEK ++ + +A+ QV+K E ++K + + P R WF+T++++ A
Sbjct: 697 KAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENLIKHEAEIMSRPKRTWFETERDKRAA 756
Query: 369 KTSQAGE 375
+ A E
Sbjct: 757 RKLGATE 763
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 146/255 (57%), Gaps = 19/255 (7%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 513 VTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAE 572
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 573 LHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVG 632
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K + R++ P
Sbjct: 633 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKAQGAKIVSRVVDPS--------------- 677
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + +K + +E E+ +L EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 678 -VADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 736
Query: 361 TKKERAAIKTSQAGE 375
T++E+ K A E
Sbjct: 737 TEREKRVAKKIGAAE 751
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 22/234 (9%)
Query: 135 KDTHL-DRKALLAALVCRTFK-DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
K HL DR A+L +L R F T+IF +K+E H + I+ GL +KA ELHGNL+Q
Sbjct: 407 KSQHLSDRPAILMSLCTRVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQ 466
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +SL++F+D + + L+A+DVA+RGLDI GVKTVINY MP++L YIHRVGRTARAG G
Sbjct: 467 RFDSLQQFRDGKVNYLLASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEG 526
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
S S E DRK++K+++ A+N K R + + V+ +R ++E
Sbjct: 527 KSCSFITENDRKILKEIVTKARNKAKSRSVS----------------QDNVNFWRNRIEE 570
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPRE--WFQTKKE 364
+ ++++I+ +E + L KA++ + KAEK++ KP EN E W++TK E
Sbjct: 571 LTEDIREIVRDELKEADLRKAEKALDKAEKVI--SKPFEENTETERVWYKTKSE 622
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 139/240 (57%), Gaps = 30/240 (12%)
Query: 140 DRKALLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
DR A+L +L R F ++F +K+E H + ILLGL G+K GELHG+L Q R E+L+
Sbjct: 465 DRTAMLLSLCTRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQ 524
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F++ E D L+ATD+AARGLD+ GV+TVINY MP SL YIHRVGRTARAG G S S
Sbjct: 525 SFRNGEVDFLLATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFI 584
Query: 259 GEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
E DRK++K ++ AK K R + E + +RAK++ + +V+
Sbjct: 585 TEADRKILKDIVSRAKTKAKSRTVA----------------QESIKLWRAKIDEMTDDVK 628
Query: 319 KILTEEKHDRLLNKADEQVSKAEKM----LKEKKPLHENP---------PREWFQTKKER 365
I+ EE + K ++ + KAE++ L KK + +N R WFQ+KKER
Sbjct: 629 DIIREELRELDFKKTEKDLMKAERIVANALGHKKLITDNGGIIPEAAPMERVWFQSKKER 688
>gi|400599006|gb|EJP66710.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 768
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 139/220 (63%), Gaps = 20/220 (9%)
Query: 147 ALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET 205
A +C+T + + +IF K++AHE I+ G+LG+ ELHG+++Q R+ES+ F+D +
Sbjct: 485 AHICKTLYTERVIIFFRQKKDAHEARIIFGILGMTCAELHGSMSQTGRIESVEAFRDGKV 544
Query: 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL 265
+ L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+ GV++++A E DRK+
Sbjct: 545 NYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKV 604
Query: 266 VKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
VK +K K + R+I E DK +A+++ ++ E+++I+
Sbjct: 605 VKAAVKAGKAQGAKITSRVIE----------------NEKADKLQAQIDGMQREIKEIMQ 648
Query: 323 EEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
EEK ++ A+ QV K E M++ + + P R WF+T+
Sbjct: 649 EEKEEKQFANAEMQVRKGENMIEHEFEIKSRPKRTWFETE 688
>gi|398407733|ref|XP_003855332.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
gi|339475216|gb|EGP90308.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
Length = 740
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 143/239 (59%), Gaps = 19/239 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R A L L + D +IF K+EAH + ++ L G+ A ELHG+++Q
Sbjct: 449 RLRPGRESKRLAYLMNLAESVYTDRVIIFFRQKKEAHRVRVIFALCGLNAAELHGSMSQE 508
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ ++ F+ + + L+ATD+A+RGLDI+G++TVINY P S E Y+HRVGRTARAG+
Sbjct: 509 QRINAIESFRTGKANYLLATDLASRGLDIKGIETVINYEAPQSHEIYLHRVGRTARAGRT 568
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G S ++A E DRK+VK +K+ K +K R I P VD ++
Sbjct: 569 GRSCTLAAEPDRKVVKAAVKSGKAQGAVIKQRTIDPSD----------------VDAWQT 612
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
++EA+E EV+ +L EEK ++ L + D ++KA+ ++K + + P + WF+++K++ A
Sbjct: 613 RLEALESEVEDVLREEKEEKALQQVDRDLTKADNIVKYEAEIKARPRKTWFESEKDKQA 671
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum
NZE10]
Length = 1056
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 143/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + + D +IF K+EAH + ++ L G+KA ELHG+++Q
Sbjct: 754 RLRPGREQKRLGYLMYLCEKVYTDRVIIFFRQKKEAHRVRVIFALCGLKAAELHGSMSQE 813
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F+ + L+ATD+A+RGLDI+G+ TVINY P S E Y+HRVGRTARAG+
Sbjct: 814 QRINSIEAFRTGKASYLLATDLASRGLDIKGIDTVINYEAPQSHEIYLHRVGRTARAGRS 873
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DR++VK +K AK +K R I A VD + A
Sbjct: 874 GCACTLAAEPDRRVVKAAVKTAKAQGAIIKQRTIE----------------AHDVDAWVA 917
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
++ A+E +V+ ++ EEK +R L++AD +++A+ + K + + P + WF+++K++ A
Sbjct: 918 RLAALEQDVEDVMREEKEERALSQADRDLTRADNIAKHEDEIMSRPKKTWFESEKDKQAA 977
Query: 369 K 369
K
Sbjct: 978 K 978
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 144/229 (62%), Gaps = 19/229 (8%)
Query: 138 HL-DRKALLAALVCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
HL DR A+L +L R F + T+IF +K+E H + I+ GL +KA ELHGNL+Q R +
Sbjct: 418 HLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFD 477
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
SL++F+D + + L+A+DVA+RGLDI GVKTVINY MP+++ +YIHRVGRTARAG G S
Sbjct: 478 SLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSC 537
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
S + DRKL+K ++ A+N K R + + V+ +R ++E +
Sbjct: 538 SFITDNDRKLLKDIVTKARNKAKSRSVS----------------QDNVNFWRNRIEELTE 581
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
+++ I+ EE + L KA++ + KAEK++ E P+ W++TK+E
Sbjct: 582 DIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVET-PKVWYKTKQE 629
>gi|384249200|gb|EIE22682.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 662
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 146/260 (56%), Gaps = 20/260 (7%)
Query: 141 RKALLAALVCRTFK-DHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLR 198
R+ L AL R+F+ T++F TK AH IL GL G+ A ELHGN+TQ +RLESL
Sbjct: 350 REGTLLALCARSFRLGRTIVFFSTKHSAHRAKILFGLAGLPPAAELHGNMTQAARLESLE 409
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
KF+ E L+ATDVAARGLDI GV VINY P +L Y+HR+GRTARAG+ G +V+ A
Sbjct: 410 KFRKGEAAFLLATDVAARGLDILGVDAVINYDAPPALSAYLHRIGRTARAGRAGRAVTFA 469
Query: 259 GEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
+ R L+K V+K + R + P EIV ++ ++ ++ ++
Sbjct: 470 DDSTRSLLKDVVKKTGAKLLIRSVQP----------------EIVAQWTQRIHSLGRDIA 513
Query: 319 KILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI--KTSQAGEG 376
+I E+ + L KA+ + KAE M+ + + PPR WFQT KE+ A +++ +
Sbjct: 514 RIDLAEREEMELRKAEMEAQKAENMVAHEAEIAARPPRTWFQTAKEKVASVDRSALSTAA 573
Query: 377 LAALILYLQSHSKTLVCSLF 396
+ L ++L S +C L
Sbjct: 574 HSLLCIHLMSRITAEICVLM 593
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 144/247 (58%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + ++F K+EAH + I GLLG+KA ELHG+++Q
Sbjct: 561 RLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQE 620
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F++ + L+ATD+AARGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 621 QRIRSVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 680
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K +K V R++ P + D++
Sbjct: 681 GRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPA----------------VADRWAQ 724
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K + +E E+ +L EEK ++ L +A+ QV+++E M+K + + P R WF +++E+
Sbjct: 725 KAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIKHEAEIMSRPKRTWFASEREKILS 784
Query: 369 KTSQAGE 375
K + A E
Sbjct: 785 KKAGAAE 791
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 17/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L +++ + ++A L A+V R++ T+IF TK+EAH + I++GL IKAG
Sbjct: 363 PKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAG 422
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHG++TQ RL +L +F+ LIATDVAARGLDI V VI++ P +L Y+HRV
Sbjct: 423 ELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRV 482
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAGK G +++ E DRKLVK + K N +K RI+P I
Sbjct: 483 GRTARAGKKGTALTFMEESDRKLVKTIAKRGAN-LKARIVP----------------GNI 525
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
V ++ K+E +E ++ +I EE+ +R L KA+ + +KA +L+ + P + WFQ++
Sbjct: 526 VAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEHAAEIKSRPAKTWFQSE 585
Query: 363 KER 365
+++
Sbjct: 586 RDK 588
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 17/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L +++ + ++A L A+V R++ T+IF TK+EAH + I++GL IKAG
Sbjct: 363 PKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAG 422
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHG++TQ RL +L +F+ LIATDVAARGLDI V VI++ P +L Y+HRV
Sbjct: 423 ELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRV 482
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAGK G +++ E DRKLVK + K N +K RI+P I
Sbjct: 483 GRTARAGKKGTALTFMEESDRKLVKTIAKRGAN-LKARIVP----------------GNI 525
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
V ++ K+E +E ++ +I EE+ +R L KA+ + +KA +L+ + P + WFQ++
Sbjct: 526 VAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASNILEHAAEIKSRPAKTWFQSE 585
Query: 363 KER 365
+++
Sbjct: 586 RDK 588
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 16/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L R+R+ ++++A+L +L +TF ++F TK+ AH + IL GL G KA
Sbjct: 349 PKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAA 408
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ ++ D LIATDVAARGLDI GV+TVIN+ P L Y+HRV
Sbjct: 409 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRV 468
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K + K A + +K RI+ +
Sbjct: 469 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE----------------QS 512
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V IL EE+ +R L KA+ + +KAE M+ ++ + P + WF T
Sbjct: 513 IKKWSEIIEQMEDQVTAILREEREERALRKAEMEATKAENMIVHQEEIFSRPKKTWFITD 572
Query: 363 KER 365
+E+
Sbjct: 573 REK 575
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 16/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L R+R+ ++++A+L +L +TF ++F TK+ AH + IL GL G KA
Sbjct: 349 PKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRLKILFGLAGFKAA 408
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHGNLTQ RL++L F+ ++ D LIATDVAARGLDI GV+TVIN+ P L Y+HRV
Sbjct: 409 ELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVETVINFACPRDLTSYVHRV 468
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +V+ + DR L+K + K A + +K RI+ +
Sbjct: 469 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE----------------QS 512
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ K+ +E +E +V IL EE+ +R L KA+ + +KAE M+ ++ + P + WF T
Sbjct: 513 IKKWSEIIEQMEDQVTAILREEREERALRKAEMEATKAENMIVHQEEIFSRPKKTWFITD 572
Query: 363 KER 365
+E+
Sbjct: 573 REK 575
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 145/243 (59%), Gaps = 17/243 (6%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L R+R ++A L A+V RTF +IF TK++AH + I++G+ G+KA
Sbjct: 365 PGTLTEEVLRLRPGAAAMKEAHLLAIVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKAC 424
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHG+LTQ RL +L +F+ E ++ATDVAARGLDI GV V++Y P +L Y+HRV
Sbjct: 425 ELHGDLTQTQRLAALEEFRTGEATHMVATDVAARGLDIAGVDAVVSYDAPRTLASYLHRV 484
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAG+ G +++ E DRKL+K V K +L S P +
Sbjct: 485 GRTARAGRKGTALTFMEESDRKLIKAVSKRGS-------------KLVARSLP----THV 527
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
V+ + AK+E + ++++ EE+ ++ L +A+ + KAE +++ +K +H P + WFQ++
Sbjct: 528 VEDFHAKIEGMGEAIKEVEMEERAEKHLARAEMEAIKAENLMEHQKEIHSRPQKTWFQSE 587
Query: 363 KER 365
+E+
Sbjct: 588 REK 590
>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 448
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 149/258 (57%), Gaps = 22/258 (8%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG 182
P L +++ + ++A L A+V R+F T++F TK++AH + I++GL +KAG
Sbjct: 54 PEHLIEEVLKLKPNQSAQKEAFLMAIVSRSFDKSTIVFTKTKQQAHRLKIIMGLSKVKAG 113
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
ELHG++TQ RL +L F+ LIATDVAARGLDI V VI+Y P +L Y+HRV
Sbjct: 114 ELHGDMTQTQRLAALDDFRTGRVTHLIATDVAARGLDIPSVDAVISYDAPKTLASYLHRV 173
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI 302
GRTARAGK G +++ E DRKLVK V K N +K R++P I
Sbjct: 174 GRTARAGKKGTALTFMEESDRKLVKTVAKRGAN-LKARVVP----------------GNI 216
Query: 303 VDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
V ++ K+E +E ++ I EE+ +R L KA+ + +KA +L+ + P + WFQ++
Sbjct: 217 VAEWHKKIEVMEEKIVHINYEERTERQLAKAEMEANKASNLLEHAAEIKSRPAKTWFQSE 276
Query: 363 KE-----RAAIKTSQAGE 375
+E + A+K ++ E
Sbjct: 277 REKRDVQKQAVKANETAE 294
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 144/247 (58%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + ++F K+EAH + I GLLG+KA ELHG+++Q
Sbjct: 525 RLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQE 584
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F++ + L+ATD+AARGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 585 QRIRSVENFREGKVSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 644
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K +K V R++ P + D++
Sbjct: 645 GRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPA----------------VADRWAQ 688
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K + +E E+ +L EEK ++ L +A+ QV+++E M+K + + P R WF +++E+
Sbjct: 689 KAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSENMIKHEAEIMSRPKRTWFASEREKILS 748
Query: 369 KTSQAGE 375
K + A E
Sbjct: 749 KKAGAAE 755
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 141/226 (62%), Gaps = 20/226 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
L+C T + + ++F K+EAH I+ GLLG+KA ELHG+++Q R+ ++ F+D +
Sbjct: 557 LLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVP 616
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+GV++VINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 617 FLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 676
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K +K + + R++ P + D++ +KVE ++ E++ IL E
Sbjct: 677 KAAVKAGRAQGAKIVSRVVDPA----------------VADEWASKVEEMQAEIEDILKE 720
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
EK ++ L +A+ QV + + ++K + + P R WF+T++E+ K
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAK 766
>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 803
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 139/241 (57%), Gaps = 17/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK-DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
+IR DR ALL +L R F T+IF +K+E H + I+ GL G+ A ELHG+L+Q
Sbjct: 398 KIRPTQLGDRPALLLSLASRVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQ 457
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R ESL+ F+D + L+A+DVAARGLD+ GVKTVINY +P +L YIHRVGRTARAG
Sbjct: 458 EQRFESLQLFRDGKVQFLLASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGA 517
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G + S E DRK++K ++ AK K R + E V +R K+
Sbjct: 518 QGRACSFVTEGDRKILKDIVSRAKTKAKSRTVS----------------QESVKYWRNKI 561
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
+ + +++ I+ EE + + KA++++ K EK++ + +EWF T E+A K
Sbjct: 562 DEMADDIKSIIKEELKEMDIRKAEKEIRKVEKLISTSSSKSSSMEKEWFATNSEKAKAKE 621
Query: 371 S 371
+
Sbjct: 622 A 622
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 140/226 (61%), Gaps = 20/226 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
L+C T + + ++F K+EAH I+ GLLG+KA ELHG+++Q R+ ++ F+D +
Sbjct: 557 LLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVP 616
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+GV++VINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 617 FLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 676
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K +K + + R++ P + D++ +KVE ++ E++ IL E
Sbjct: 677 KAAVKAGRAQGAKIVSRVVDPA----------------VADEWASKVEEMQAEIEDILKE 720
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
EK ++ L +A+ QV + + ++K + P R WF+T++E+ K
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHGSEIMARPKRTWFETEREKREAK 766
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 147/255 (57%), Gaps = 22/255 (8%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 524 VTLVQEFVRLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAE 583
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q +E+ R+ K L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 584 LHGSMSQEQSVENFREGK---AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVG 640
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K+ + R+I P
Sbjct: 641 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPA--------------- 685
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + AK E + EV+++L+EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 686 -VADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 744
Query: 361 TKKERAAIKTSQAGE 375
T++++ A + A E
Sbjct: 745 TERDKKAARKLGAAE 759
>gi|402582491|gb|EJW76436.1| hypothetical protein WUBG_12653, partial [Wuchereria bancrofti]
Length = 304
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 30/232 (12%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR++ DR+ ++A LV R F DHT+IFV TK+ +HI+LGLLG K G+LH LTQ
Sbjct: 97 RIRENHEADRECIVAGLVTRNFPDHTIIFVKTKKTCRRLHIILGLLGAKVGQLHSGLTQR 156
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+E+L +FK E DVL++TD+AARGLD+ GVKTVIN MP +L+ YIHRVGRTARAG+
Sbjct: 157 QRVEALFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPTTLKQYIHRVGRTARAGRV 216
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+S+ GE +RK++K+++ + K +++D Y+ ++E
Sbjct: 217 GRSISLVGESERKVLKEIVASNKE-------------------------DVIDAYKNRIE 251
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKK 363
+++ ++KI EE+ +R L A E++ + + L+ R W + +K
Sbjct: 252 SLKESIEKIKEEEEVERTLRLAQEELQRGKTRLE-----GNTEKRHWIKLQK 298
>gi|170592549|ref|XP_001901027.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158591094|gb|EDP29707.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 452
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 30/232 (12%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR++ DR+ ++A LV R F DHT+IFV TK+ +HI+LGLLG K G+LH LTQ
Sbjct: 137 RIRENHEADRECIVAGLVTRNFPDHTIIFVKTKKTCRRLHIVLGLLGAKVGQLHSGLTQR 196
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+E+L +FK E DVL++TD+AARGLD+ GVKTVIN MP +L+ YIHRVGRTARAG+
Sbjct: 197 QRVEALFRFKKAELDVLVSTDLAARGLDVEGVKTVINMDMPTTLKQYIHRVGRTARAGRV 256
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+S+ GE +RK++K+++ + K +++D Y+ ++E
Sbjct: 257 GRSISLVGESERKILKEIVASNKE-------------------------DVIDAYKNRIE 291
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKK 363
+++ ++KI EE+ +R L A E++ + + L+ R W + +K
Sbjct: 292 SLKESIEKIKEEEEVERTLRLAQEELQRGKTRLE-----GSTEKRHWMKMQK 338
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 141/227 (62%), Gaps = 20/227 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
L+C+T + + ++F K+EAH I+ GLLG+KA ELHG+++Q R+ ++ F+D +
Sbjct: 550 LLCQTVYTNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRDGKVP 609
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+GV++VINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 610 FLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIV 669
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K +K + + RI+ P + D++ KVE ++ E++ IL E
Sbjct: 670 KAAVKAGRAQGAKIVSRIVDP----------------NVADEWAIKVEEMQSEIEDILKE 713
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
EK ++ L +A+ QV++ ++K + + P R WF+T++E+ K
Sbjct: 714 EKAEKHLAQAEMQVTRGHNLIKHEDEIMSRPKRTWFETEREKKEAKN 760
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 140/226 (61%), Gaps = 20/226 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
L+C T + + ++F K+EAH I+ GLLG+KA ELHG+++Q R+ ++ F+D +
Sbjct: 557 LLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVP 616
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+GV++VINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 617 FLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 676
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K K + + R++ P + D++ +KVE ++ E++ IL E
Sbjct: 677 KAAAKAGRAQGAKIVSRVVDPA----------------VADEWASKVEEMQAEIEDILKE 720
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
EK ++ L +A+ QV + + ++K + + P R WF+T++E+ K
Sbjct: 721 EKEEKQLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAK 766
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 143/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R+ R A L L + + D +IF K+EAH + ++ L G+KA ELHGN+TQ
Sbjct: 457 RLRQGREGKRLAYLMVLCEQIYTDRVIIFFRQKKEAHRVRVIFALAGMKAAELHGNMTQE 516
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ ++ F+ + L+ATD+A+RG+DI+G++TVINY P S E Y+HRVGRTARAG+
Sbjct: 517 QRINAIETFRTGKASFLLATDLASRGIDIKGIETVINYEAPQSHEIYLHRVGRTARAGRS 576
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K K +K R + A VD ++
Sbjct: 577 GRACTLAAEPDRKVVKAAVKAGKAQGAVIKQRSVE----------------ASDVDAWQT 620
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
+++A+ +++ +L EEK +R L D ++KA+ ++K + + P + WF+++K++ A
Sbjct: 621 RLDAMAEDIEDVLREEKEERALQAVDRDLTKADNIVKYEDEIKARPKKTWFESEKDKQAA 680
Query: 369 K 369
K
Sbjct: 681 K 681
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + +IF K+EAH + I+ LLG+KA ELHG+L+Q
Sbjct: 527 RLRPGREDKRLGYLLHLCKEIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQE 586
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 587 QRIKSVENFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 646
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK ++ K + R+I + D +
Sbjct: 647 GRACTIAAEPDRKIVKLAVRAGKAQGAKIASRVIEQA----------------VADSWAQ 690
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
K E + EV +IL EEK ++ L++A+ Q +K E ++K + P R WF+T+KE+
Sbjct: 691 KAEEMADEVAEILQEEKTEKQLSQAEMQFTKGENLMKHGAEIMSRPKRTWFETEKEK 747
>gi|425770601|gb|EKV09069.1| hypothetical protein PDIP_65800 [Penicillium digitatum Pd1]
gi|425772047|gb|EKV10473.1| hypothetical protein PDIG_56240 [Penicillium digitatum PHI26]
Length = 1500
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 137/237 (57%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + +IF K+EAH + I+ GLLG+KA ELHG+L+Q
Sbjct: 509 RLRPGREDKRLGYLLHLCKEAYTKRVIIFFRQKKEAHRVRIIFGLLGLKAAELHGSLSQE 568
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 569 QRIKSVENFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 628
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK ++ K + R++ + D +
Sbjct: 629 GRACTIAAEPDRKIVKLAVRAGKAQGAKIVSRVVEQA----------------VADSWAQ 672
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
K E + EV ++L EEK ++ ++A+ Q +K E ++K + P R WF+T+K++
Sbjct: 673 KAEDMADEVAEVLQEEKTEKQFSQAEMQFTKGENLMKHGNEIMSRPKRTWFETEKDK 729
>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
gi|74660102|sp|Q6CEB8.1|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica CLIB122]
Length = 753
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 16/243 (6%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIRK HL + ALLA+++ + K+ T+IFV K AH + I+LGLLG++ GELHG L+Q
Sbjct: 476 RIRKRDHL-KPALLASILKKMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQ 534
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RL+S+ FK E +L+ TD+A+RGLDI ++ V+NY MP + Y+HRVGRTARAG+
Sbjct: 535 EQRLQSITAFKKLEVPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGR 594
Query: 251 GGVSVSMAGE--VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G S+++ GE DR +V++ IK+ + + + + +P V+K +
Sbjct: 595 EGRSITLVGEAAADRAIVREAIKSVSESKQGKAVG------RNVDWPE------VEKLYS 642
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K+E V +IL EEK ++ + +A+ +V K E +LK +K + P R WFQ +E+ A
Sbjct: 643 KIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKYEKEIASRPRRTWFQNAQEKKAD 702
Query: 369 KTS 371
+TS
Sbjct: 703 ETS 705
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 148/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 454 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 512
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 513 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 572
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 573 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 623
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE+++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 624 NKLVESMDDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 682
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 457 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 515
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 516 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 576 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 626
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 627 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 685
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 455 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 513
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 514 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 573
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 574 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 624
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 625 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 683
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 459 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 517
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 518 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 577
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 578 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 628
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 629 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 687
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 451 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 509
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 510 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 569
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 570 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 620
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 621 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 679
>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
98AG31]
Length = 573
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 20/230 (8%)
Query: 139 LDRKALLAALVCRTF---KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
+ R+A+L L C+ K T+IF +K AH M + L G+KA ELHGNLTQ R+
Sbjct: 223 IQREAILVTL-CKASSFSKGRTIIFFRSKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMS 281
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
SL+ FKD + L+ATD+A+RGLDI+GV+ VINY P+ + Y+HR+GRTARAGK G ++
Sbjct: 282 SLQDFKDGKVSYLLATDLASRGLDIKGVERVINYETPNQYDVYLHRIGRTARAGKKGSAL 341
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
++ GE DRKLVK+ +N + +K R I P +IV ++ ++
Sbjct: 342 TLVGESDRKLVKEARRNCQGTIKQRKIDP----------------KIVQDVSKELARLQS 385
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ IL +E+ +++L K + ++ K + +++ + P R WFQ++ ++
Sbjct: 386 SIATILEDEQEEKVLKKTEMELKKGQNLIEHDDEIKSRPARTWFQSESDK 435
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 425 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 483
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 484 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 543
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 544 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 594
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 595 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 653
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD ++F +K+EAH + I+ GLLG+K ELHG+++Q
Sbjct: 528 RLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQE 587
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 588 QRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 647
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K + + R+I DK+ A
Sbjct: 648 GRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAE----------------ADKWAA 691
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVE ++ EVQ+IL EEK ++ L +A+ +V++ +L +K + P R WF+++KE+
Sbjct: 692 KVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHEKEIMSRPKRTWFESEKEKLQA 751
Query: 369 K 369
K
Sbjct: 752 K 752
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 142/230 (61%), Gaps = 13/230 (5%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR R A+L L FK T+IF +K AH++ I+ GLL + A ELHGNL+Q
Sbjct: 394 RIRSHKEHLRTAILLYLCSDVFKTKTIIFFDSKSFAHKIRIIFGLLHLNARELHGNLSQE 453
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ESL F+ T+ L+ATD+A+RGLDI+GVK +INY P S Y+HR+GRTAR G
Sbjct: 454 QRIESLELFRRGRTNFLLATDLASRGLDIKGVKYIINYEAPSSFNIYLHRIGRTARGGCD 513
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
GV+V++ GE DR+++K K A+ KH I ++ +FPP +++ Y K++
Sbjct: 514 GVAVTLIGEGDRRIMKMATKIAE---KHGNI------IRNRTFPP----NLINTYNTKLQ 560
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+E VQ +L EEK ++ L +A+ ++ K++ ++K +K + PR WF T
Sbjct: 561 NLENAVQNVLKEEKEEKELLQAEMELQKSKNLIKHEKEIKSRLPRTWFYT 610
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + D ++F K+EAH ++ GL G+KA ELHG+++Q
Sbjct: 500 IRLRPGRETKRMGYLLYLCANIYTDRVIVFFRQKKEAHRARVIFGLSGLKATELHGSMSQ 559
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P S E Y+HRVGRTARAG+
Sbjct: 560 EQRINSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHEIYLHRVGRTARAGR 619
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK +K + + R+I A D++
Sbjct: 620 QGRACTLAAEPDRKIVKAAVKTGRTQGAKIVSRVIE----------------ASEADEWA 663
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
AKV+ ++ E+ +IL EEK D+ L + + +V K E ++ + + P R WF++++++ +
Sbjct: 664 AKVDDMKDEIDEILIEEKEDKQLAQVEMEVRKGENIMAHGEEIKGRPRRTWFESEQDKLS 723
Query: 368 IK 369
K
Sbjct: 724 AK 725
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 458 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 516
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 517 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 576
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + +++
Sbjct: 577 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGXNVDWVQ------IEET 627
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 628 NKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 686
>gi|167523499|ref|XP_001746086.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775357|gb|EDQ88981.1| predicted protein [Monosiga brevicollis MX1]
Length = 654
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 147/235 (62%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR R+A++ +L RT+K ++FV +K+ AH + I+ GL ++AGELHG+LTQ
Sbjct: 286 IRIRPQHEDQREAIVLSLCKRTYKSRCLVFVRSKKHAHRLRIIFGLADLRAGELHGSLTQ 345
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
RL +L +FK+ E + LI +D+A RGLDI GVK+VIN MP++++ YIHRVGRTAR G
Sbjct: 346 AQRLNALEQFKNGELEFLICSDLAGRGLDIPGVKSVINVSMPNTIKQYIHRVGRTARGGA 405
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G + ++ GE +RKL++++ ++ + +++R+I ++ +++ +
Sbjct: 406 TGRACTLVGESERKLLRELYRDNSSTMRNRVIK----------------TDVTMQFKRYI 449
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++ ++++IL EE+ L +A+ +V +AE ++ + + R W Q++K++
Sbjct: 450 DSLADDIRQILREEEEMAQLQEAEREVRRAENLILHEDEIKARAARTWIQSEKDK 504
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD ++F +K+EAH + I+ GLLG+K ELHG+++Q
Sbjct: 527 RLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQE 586
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 587 QRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 646
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K + + R+I DK+ A
Sbjct: 647 GRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAE----------------ADKWAA 690
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVE ++ EVQ+IL EEK ++ L +A+ +V++ +L K + P R WF+++KE+
Sbjct: 691 KVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHDKEIMSRPKRTWFESEKEKLQA 750
Query: 369 K 369
K
Sbjct: 751 K 751
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 136/217 (62%), Gaps = 20/217 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + +IF K+ AH I+ GLLG+ ELHG+++Q R+ S+ F+D + D
Sbjct: 471 ICKTLYTKRVIIFFRQKKVAHRARIIFGLLGLSCAELHGSMSQTQRIGSVEDFRDGKVDY 530
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+ V TVINY P +LE Y+HRVGRTARAG+ GV++++A E DRK+VK
Sbjct: 531 LLATDLASRGLDIKRVDTVINYEAPQNLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVK 590
Query: 268 QVIKNAK---NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K + + R+I PG DK++A+V+ +E +++ +L EE
Sbjct: 591 AAVKAGKAQGSKIVSRVIDPGD----------------ADKWQAQVDEMEEDIEAVLREE 634
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+ +R L + QV K E ++K ++ +H P R WF+T
Sbjct: 635 EEERQLAHVEMQVKKGENLIKHEEEIHSRPKRTWFET 671
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 457 RIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSL 515
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 516 TQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 575
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + +++
Sbjct: 576 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------IEET 626
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE + ++ IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ++ ++
Sbjct: 627 NKLVEPMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDK 685
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD ++F +K+EAH + I+ GLLG+K ELHG+++Q
Sbjct: 527 RLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQE 586
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 587 QRIKSVEGFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 646
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K + + R+I DK+ A
Sbjct: 647 GRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAE----------------ADKWAA 690
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVE ++ EVQ+IL EEK ++ L +A+ +V++ +L K + P R WF+++KE+
Sbjct: 691 KVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHDKEIMSRPKRTWFESEKEKLQA 750
Query: 369 K 369
K
Sbjct: 751 K 751
>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
Length = 1466
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD ++F +K+EAH + I+ GLLG+K ELHG+++Q
Sbjct: 528 RLRPGREEKRLGYLIVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQE 587
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P S Y+HRVGRTARAG+
Sbjct: 588 QRIKSVESFRDGKVSFLLATDVASRGLDIKGVETVINYEAPQSHAIYLHRVGRTARAGRS 647
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K + + R+I DK+ A
Sbjct: 648 GRACTLAAEPDRKVVKAAVKTGRAQGAKIVSRLIETAE----------------ADKWAA 691
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVE ++ EVQ+IL EEK ++ L +A+ +V++ +L +K + P R WF+++KE+
Sbjct: 692 KVEEMQEEVQEILREEKEEKQLAQAEMEVTRGSNLLNHEKEIMSRPKRTWFESEKEKLQA 751
Query: 369 K 369
K
Sbjct: 752 K 752
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 159/294 (54%), Gaps = 36/294 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
EI+ S+ T +A+MTS + + PV L + R+R+
Sbjct: 453 NEILTTIPKSRQTMLFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQG 512
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
R A L + + + + +IF K+EAH + ++ L G+KA ELHGN++Q R+++
Sbjct: 513 KEDKRLAYLMYICEKIYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQA 572
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
+ F+ ++ L+ATDVA+RGLDI+ V TVINY P S E Y+HRVGRTARAG+ G + +
Sbjct: 573 VEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACT 632
Query: 257 MAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+A E DRK+VKQ +K +++ V R +P E D++ K+ +
Sbjct: 633 LAAEPDRKVVKQAVKQSRDQGSKVVSRQVP----------------VEETDRWMEKLRGL 676
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
E E++ +L EEK +R L+ + + + +++ + + P R WF+T+KE+ A
Sbjct: 677 EDEIEDVLKEEKEERTLSITERDLKRGMNLIEHEAEIKSRPKRVWFETEKEKMA 730
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 150/262 (57%), Gaps = 23/262 (8%)
Query: 118 FLLRPP----VLLCLLCFRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEM 170
++ PP L RIRK HL + ALL L+ + T + ++FV K AH++
Sbjct: 437 IMINPPKQAAARLTQEFVRIRKRDHL-KPALLFYLIRKLDGTGQKRIVVFVARKEMAHKL 495
Query: 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230
I+LGLLG+K GELHG+LTQ RL+S+ FK E VLI TD+A+RGLDI ++ VIN+
Sbjct: 496 RIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVINFD 555
Query: 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNA-KNPVKHRIIPPGYP 287
MP S E Y+HRVGRTARAG+ G SV+ GE DR +V+ IK+ ++ K++ +
Sbjct: 556 MPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIKSVEESSSKNKAVSRNVE 615
Query: 288 RLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEK 347
+ +++ VE+ + IL EEK ++ + +A+ Q+ K E M+K K
Sbjct: 616 WTQ------------IEETNKLVESFGETIDDILVEEKQEKEILRAEMQLRKGENMIKHK 663
Query: 348 KPLHENPPREWFQTKKERAAIK 369
K + P R WFQ++ E+ K
Sbjct: 664 KEIQSRPKRTWFQSEAEKKNAK 685
>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 772
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 143/230 (62%), Gaps = 22/230 (9%)
Query: 149 VCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + ++F K+EAH I+ GLLG+ ELHG++ Q R+ S+ F+D + +
Sbjct: 487 ICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNY 546
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P ++E Y+HRVGRTARAG+ G+++++A E DRK+VK
Sbjct: 547 LLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVK 606
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K + RII P DK++A+V+ +E E+++I+ EE
Sbjct: 607 AAVKAGKAQGAKIMSRIIEPAE----------------ADKWQAQVDEMEDEIEEIMVEE 650
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAG 374
K ++ +A+ QV K E +L+ + + P R WF+T++++ K +AG
Sbjct: 651 KQEKQFAQAEMQVRKGENILQHEAEIKARPKRTWFETEQDKK--KAKEAG 698
>gi|345563744|gb|EGX46729.1| hypothetical protein AOL_s00097g477 [Arthrobotrys oligospora ATCC
24927]
Length = 854
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 137/231 (59%), Gaps = 14/231 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR R A+L L +K ++F +K AH + I+ GLLG+KA ELHG+L+Q
Sbjct: 541 IRIRPGREGGRLAMLVLLATELYKSRCIVFFRSKVYAHRVRIIFGLLGLKAAELHGSLSQ 600
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R++++ +F+D D L+ATD+A+RGLDI+ V VIN+ +P S E Y HRVGRTARAG+
Sbjct: 601 EQRIKAVEQFRDGTVDFLLATDLASRGLDIKNVSYVINFELPQSHEIYTHRVGRTARAGR 660
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G ++++A E DRK+VK+ IK + K ++ K VD+ K+
Sbjct: 661 SGRAITLAAEADRKIVKKAIKAGQENGK--VVSRTLDISK------------VDEMTEKL 706
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+E +++ IL +EK ++ L + + Q+ K E M+K ++ + P R WF+T
Sbjct: 707 NGMEDDIEAILEDEKEEKQLLQVEMQLRKGENMIKYEEEIASRPRRTWFET 757
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R A L L + + +IF K+EAH + ++ GL G+KA ELHG+++Q
Sbjct: 534 RLRPGREDKRLASLIHLCQQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQE 593
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P + E Y+HRVGRTARAG+
Sbjct: 594 QRIKSVEDFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRS 653
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A + DRK+V+ +K K + R+I +EI DK
Sbjct: 654 GRACTLAADPDRKVVRAAVKAGKTQGAKIVSRVIG----------------SEIQDKLAE 697
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E + EV IL EEK ++ L + + Q SK E +LK + + P R WF+T+KE+
Sbjct: 698 EIEGLRDEVDAILREEKEEKELAQVEMQTSKGENLLKHQTEIMSRPKRTWFETEKEK 754
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 141/237 (59%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R A L L + + +IF K+EAH + ++ GL G+KA ELHG+++Q
Sbjct: 527 RLRPGREDKRLASLIHLCQQVYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQE 586
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATDVA+RGLDI+GV+TVINY P + E Y+HRVGRTARAG+
Sbjct: 587 QRIKSVEDFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRS 646
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A + DRK+V+ +K K + R+I +EI D+
Sbjct: 647 GRACTLAADPDRKVVRAAVKAGKTQGAKIISRVIG----------------SEIQDELAT 690
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++E ++ E+ IL EEK ++ L + + Q SK E +LK + + P R WF+T+KE+
Sbjct: 691 EIEDLQDEIDAILREEKEEKELAQVEMQTSKGENLLKHQTEIMSRPKRTWFETEKEK 747
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 111/163 (68%)
Query: 120 LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179
L+ P L RIR+ +++A+L AL +TFK +IF TK+ AH + I+ GL G+
Sbjct: 396 LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRLKIVFGLSGM 455
Query: 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239
KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P ++ Y+
Sbjct: 456 KAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFACPRDVKTYL 515
Query: 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRII 282
HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+
Sbjct: 516 HRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIV 558
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 143/224 (63%), Gaps = 16/224 (7%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
++C+T +KD +IF K+EAH + I+ GL+G+KA ELHG+++Q R++S+ F+D +
Sbjct: 549 VLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVS 608
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 609 FLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVV 668
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI-VDKYRAKVEAIEGEVQKILTEEK 325
K +K R + P+ DK+ AKVE ++ EV++IL EEK
Sbjct: 669 KAAVKTG--------------RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEK 714
Query: 326 HDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++ L +A+ +V++ ++ +K + P R WF+T+KE+ K
Sbjct: 715 EEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEKLQAK 758
>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
Length = 834
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 143/224 (63%), Gaps = 16/224 (7%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
++C+T +KD +IF K+EAH + I+ GL+G+KA ELHG+++Q R++S+ F+D +
Sbjct: 549 VLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVS 608
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 609 FLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVV 668
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI-VDKYRAKVEAIEGEVQKILTEEK 325
K +K R + P+ DK+ AKVE ++ EV++IL EEK
Sbjct: 669 KAAVKTG--------------RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEK 714
Query: 326 HDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++ L +A+ +V++ ++ +K + P R WF+T+KE+ K
Sbjct: 715 EEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEKLQAK 758
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 143/224 (63%), Gaps = 16/224 (7%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
++C+T +KD +IF K+EAH + I+ GL+G+KA ELHG+++Q R++S+ F+D +
Sbjct: 549 VLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVS 608
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATDVA+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 609 FLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVV 668
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEI-VDKYRAKVEAIEGEVQKILTEEK 325
K +K R + P+ DK+ AKVE ++ EV++IL EEK
Sbjct: 669 KAAVKTG--------------RAQGAKIVSRPIDSAEADKWAAKVEEMQEEVKEILKEEK 714
Query: 326 HDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++ L +A+ +V++ ++ +K + P R WF+T+KE+ K
Sbjct: 715 EEKQLAQAEMEVTRGSNLINHEKEIMSRPKRTWFETEKEKLQAK 758
>gi|380487114|emb|CCF38253.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 777
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 143/230 (62%), Gaps = 22/230 (9%)
Query: 149 VCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + ++F K+EAH I+ GLLG+ ELHG++ Q R+ S+ F+D + +
Sbjct: 492 ICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNY 551
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P ++E Y+HRVGRTARAG+ G+++++A E DRK+VK
Sbjct: 552 LLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVK 611
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K + R+I P DK++A+V+ +E E+++I+ EE
Sbjct: 612 AAVKAGKAQGAKIMSRVIEPTE----------------ADKWQAQVDEMEDEIEEIMVEE 655
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAG 374
K ++ +A+ QV K E +L+ + + P R WF+T++++ K +AG
Sbjct: 656 KQEKQFAQAEMQVRKGENILQHEAEIKGRPKRTWFETEQDKK--KAKEAG 703
>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 835
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 147/241 (60%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD +IF K+EAH + I+ GL G+KA ELHG+++Q
Sbjct: 536 RLRPGREDKRLGYLVTLCKTVYKDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQE 595
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 596 QRIKSVESFRDGKVSFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 655
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K + + R+I +AE DK+ A
Sbjct: 656 GRACTIAAEPDRKVVKAAVKTGRAQGAKIVSRLI---------------DVAE-ADKWAA 699
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVE +E EV++IL EEK ++ L +A+ +V++ ++ +K + P R WF+++KE+
Sbjct: 700 KVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISHEKEIMSRPKRTWFESEKEKLQA 759
Query: 369 K 369
K
Sbjct: 760 K 760
>gi|449018026|dbj|BAM81428.1| probable ATP dependent RNA helicase [Cyanidioschyzon merolae strain
10D]
Length = 703
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 142/236 (60%), Gaps = 17/236 (7%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R ALL AL R+F ++F KR AH I+ L+G++A ELHGNLTQ RL++L
Sbjct: 429 ERAALLLALCSRSFTRRVIVFFARKRTAHLFKIIFDLVGLRAAELHGNLTQAQRLDALEA 488
Query: 200 FKD-EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+ D L+ TD+AARGLDI GV+TV+NY +P + Y+HRVGRTARAGK G +VS+
Sbjct: 489 FRTCTNADFLLCTDLAARGLDIHGVETVLNYELPKDIREYVHRVGRTARAGKHGRAVSIF 548
Query: 259 GEVDRK---LVKQVIKNAKNPVKHRI------IPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
+ DRK L++++ + A+ ++R+ P P L P A ++ ++R +
Sbjct: 549 QQTDRKERHLLRRLREQAR---RYRVDALRGDAPVPAPVLLERRIP----ATVIREWRDR 601
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ ++ V++ L +E+ R L +A+ KA +L ++ ++ PPR WFQ+K ER
Sbjct: 602 LHSLLDSVREKLRQEREHRELERAERLERKAHNLLIHEQEIYARPPRTWFQSKAER 657
>gi|453086868|gb|EMF14909.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 725
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R A L L + + D +IF K+EAH + ++ L G+KA ELHG L+Q
Sbjct: 457 RLRPGREKKRLAYLMYLCEKVYTDRVIIFFRQKKEAHRVRVIFALAGLKAAELHGTLSQE 516
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ ++ F+ + L+ATD+A+RGLDI+G++TVINY P S E Y+HRVGRTARAG+
Sbjct: 517 QRINAIESFRTGKAGFLLATDLASRGLDIKGIETVINYEAPQSHEIYLHRVGRTARAGRT 576
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K K +K R I A D + A
Sbjct: 577 GRACTLAAEPDRKVVKAAVKAGKAQGAVIKQRTIE----------------AHDADAWHA 620
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
++EA+ +++++L EEK ++ LN D+Q++KA+ M+K + + P + WF+++K++ A
Sbjct: 621 RIEAMADDIEEVLREEKEEKALNIVDKQLTKADNMVKYEDEIKSRPKKTWFESEKDKQAA 680
Query: 369 K 369
K
Sbjct: 681 K 681
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 20/246 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L + ++F KREAH + I+ GLLG+KA ELHG+++Q
Sbjct: 527 RLRPGREDKRLGYLLYLCKEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQE 586
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 587 QRIKSVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 646
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VK +K +K V R++ P + D++
Sbjct: 647 GRACTIAAEPDRKVVKAAVKASKAQGAKVASRVVDPA----------------VADQWAK 690
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE-RAA 367
K +E E+ ++L EEK ++ L +A+ QV+K E ++K + + P R WF+++K+ RAA
Sbjct: 691 KAADLEEEINEVLEEEKTEKQLAQAEMQVTKGENLIKHEAEIMSRPKRTWFESEKDKRAA 750
Query: 368 IKTSQA 373
K A
Sbjct: 751 RKLGAA 756
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 150/255 (58%), Gaps = 19/255 (7%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L R+R R L L + ++F K+EAH + I+ GLLG+KA E
Sbjct: 529 VTLVQEFVRLRPGREDKRLGYLLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAE 588
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+++Q R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVG
Sbjct: 589 LHGSMSQEQRIKSVENFREGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVG 648
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLA 300
RTARAG+ G + ++A E DRK+VK +K K+ + R+I P
Sbjct: 649 RTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPA--------------- 693
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ D + AK E + EV+++L+EEK ++ L +A+ QV+K E ++K + + P R WF+
Sbjct: 694 -VADSWAAKAEELAEEVEEVLSEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPKRTWFE 752
Query: 361 TKKERAAIKTSQAGE 375
T++++ A + A E
Sbjct: 753 TERDKKAARKLGAAE 767
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 25/243 (10%)
Query: 132 RIRKDTHLDRKAL--LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
RIRK HL L L + + ++FV K H + I+LGLLG+ ELHG+L
Sbjct: 461 RIRKRDHLKPSTLFYLIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLN 520
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q RL+S+ KFK E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARAG
Sbjct: 521 QEQRLQSINKFKSLEVPVLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAG 580
Query: 250 KGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD--- 304
+ G SVS GE +R +VK IK+A+ + + P+ VD
Sbjct: 581 REGRSVSFVGETSQERSIVKSAIKSAQESGEKNL----------------PVGRNVDWNQ 624
Query: 305 --KYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+ VE++ V+ IL EEK ++ + +A+ Q+ K E ++K K+ + P R WFQT+
Sbjct: 625 IEEINKTVESMSDTVKDILDEEKQEKEILQAEMQLKKGENLIKHKQEIESRPKRTWFQTE 684
Query: 363 KER 365
E+
Sbjct: 685 TEK 687
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 142/243 (58%), Gaps = 13/243 (5%)
Query: 132 RIRKDTHLDRKALLAALVCRT---FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIR HL + ALL L+ + + ++FV K AH++ I+LGLLG+ ELHG+L
Sbjct: 473 RIRTRDHL-KPALLFNLIKKLDEYSQKRMVVFVARKETAHKLRIILGLLGMNVAELHGSL 531
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RLES+ KFK E VLI TD+A+RGLDI ++ VINY MP S + Y+HRVGRTARA
Sbjct: 532 TQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYDIYLHRVGRTARA 591
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SVS+ GE +R +V+ IK+ ++ K I R + EI
Sbjct: 592 GREGRSVSLVGESSNERSIVRDAIKSVEDVSK---IKNDGSRALGRQVNWNQVEEI---- 644
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
VE + G V+ +L EEK ++ + +A+ Q+ K E +LK + + P R WFQ++ E+
Sbjct: 645 NKLVENMAGTVEDVLEEEKQEKEILRAEMQIRKGENLLKHRAEIQARPRRTWFQSETEKK 704
Query: 367 AIK 369
K
Sbjct: 705 NAK 707
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 141/237 (59%), Gaps = 12/237 (5%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + +LL L+ + + ++FV K AH++ I+LGLLG+ ELHG+L
Sbjct: 430 RIRKRDHL-KPSLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSL 488
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK + VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 489 TQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 548
Query: 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G+ G S++ GE + + ++K+A V IP + + V++
Sbjct: 549 GREGRSITFVGEASAE--RSIVKDAIRGVNDSEIPGSKAVGRNVDWNQ------VEETNK 600
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE ++ VQ IL EEK ++ + +A+ ++ K E +LK K + P R WFQ++KE+
Sbjct: 601 IVENMDQTVQDILVEEKEEKEILRAEMELKKGENLLKHKDEIQSRPKRTWFQSEKEK 657
>gi|429859431|gb|ELA34212.1| ATP-dependent RNA helicase drs1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 772
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 143/236 (60%), Gaps = 24/236 (10%)
Query: 149 VCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + +IF K+EAH I+ G+LG+ ELHG++ Q R+ S+ F+D + +
Sbjct: 488 ICKTMHTERVIIFFRQKKEAHRARIIFGMLGMSCAELHGSMNQAQRIASVENFRDGKVNY 547
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P LE Y+HRVGRTARAG+ GV+V++A E DRK+VK
Sbjct: 548 LLATDLASRGLDIKGVDTVINYEAPQKLEIYVHRVGRTARAGRSGVAVTLAAEPDRKVVK 607
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K+ + R+I P DK++A+V+ +E E+++I+ EE
Sbjct: 608 AAVKAGKSQGAKIMSRVIEPAE----------------ADKWQAQVDEMEDEIEEIIVEE 651
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT----KKERAAIKTSQAGEG 376
K ++ +A+ QV K E +L+ + + P R WF+T KK + A + GEG
Sbjct: 652 KQEKQFAQAEMQVRKGENILEHEAEIKSRPKRTWFETEQDKKKAKDAGRAELNGEG 707
>gi|340959217|gb|EGS20398.1| hypothetical protein CTHT_0022270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 806
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 142/230 (61%), Gaps = 22/230 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+ + + +IF K+ AHE I+ GL G+ ELHG++ Q R+ S+ F+D + +
Sbjct: 522 ICKNLYTERVIIFFRQKKVAHEARIIFGLHGLSCAELHGSMNQTQRIASVEAFRDGKVNF 581
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATDVA+RGLDI+GV TVINY P + E Y+HRVGRTARAG+ G ++++A E DRK+VK
Sbjct: 582 LLATDVASRGLDIKGVDTVINYEAPQTHEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 641
Query: 268 QVIKNAKN---PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K AK V R+I A VDK +A+V+A+ EVQ+IL EE
Sbjct: 642 AAVKAAKQHGAKVVSRVID----------------AAEVDKLQAEVDAMAEEVQEILREE 685
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAG 374
K ++ L + + QV K E ++K ++ + P R WF+++K++ K QAG
Sbjct: 686 KEEKQLQQMEMQVRKGENLIKHEEEIKSRPKRTWFESEKDKQRAK--QAG 733
>gi|452823641|gb|EME30650.1| ATP-dependent RNA helicase DEAD [Galdieria sulphuraria]
Length = 558
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 135/226 (59%), Gaps = 18/226 (7%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R + L AL CRT+ ++F + AH++ I+ G+LG+ A ELHGNL+Q R+E+L +F
Sbjct: 332 RISYLLALCCRTYTQRVILFFSKRSVAHQIFIIFGMLGLSAVELHGNLSQMQRMEALNRF 391
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+ + + L+ TDVA+RGLDI V+TVINY MP+ + Y+HRVGRTARAG G +V++ E
Sbjct: 392 RKGQCEFLLCTDVASRGLDIFDVRTVINYEMPNDIRTYVHRVGRTARAGAKGKAVTLVDE 451
Query: 261 VD--RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
R+L+ + K +K +K R I ++DKY + + +G+++
Sbjct: 452 TSHARRLLSVIQKRSKTTLKSRSITDS----------------VLDKYLEILFSKQGQIK 495
Query: 319 KILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
+ L +E+H++ + A+ + KA+ ++ ++ P R WF++ ++
Sbjct: 496 EQLQKERHEKEIEMAEMEAKKAQNLIDHADEIYARPKRTWFRSSRK 541
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 141/243 (58%), Gaps = 13/243 (5%)
Query: 132 RIRKDTHLDRKALLAALVCRT---FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIR HL + ALL L+ + + ++FV K AH + I+LGLLG+ ELHG+L
Sbjct: 450 RIRARDHL-KPALLFNLIKKLDGYGQKRMVVFVSRKEMAHRLRIILGLLGMNVAELHGSL 508
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
+Q RLES+ KFK E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 509 SQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARA 568
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SVS GE +R +V+ IK+ + K I G + + V++
Sbjct: 569 GREGRSVSFVGETSNERSIVRDAIKSVEEVSK--IKSDG-----SRALGRQVNWNQVEET 621
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
VE + ++ +L EEK ++ + +A+ Q+ K E MLK K+ + P R WFQT+ E+
Sbjct: 622 NKLVEKMSDTIEDVLVEEKQEKEILRAEMQLKKGENMLKHKQEIQSRPRRTWFQTEAEKK 681
Query: 367 AIK 369
K
Sbjct: 682 NAK 684
>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|74695973|sp|Q75F95.1|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|374105576|gb|AEY94487.1| FAAL164Cp [Ashbya gossypii FDAG1]
Length = 734
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 146/247 (59%), Gaps = 17/247 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
R+RK HL + ALL L+ + T + ++FV K AH + ++LGLLG+KAGELHG+L
Sbjct: 443 RLRKREHL-KPALLYHLLRKLDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSL 501
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ FK + VL+ TD+A+RGLDI ++ VINY MP + E Y+HRVGRTARA
Sbjct: 502 TQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARA 561
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV++ GE +R +VK IK+ G R + EI
Sbjct: 562 GREGKSVTLVGESTQERSIVKDAIKSVDG-------SKGSGRACGRVVDWKQVEEIHKLV 614
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
+AK + I GE IL EEK ++ + +A+ ++ K E MLK K+ ++ P R WFQ++ E+
Sbjct: 615 QAKEDVI-GE---ILEEEKQEKEILRAEMEIRKGENMLKFKEEINARPRRTWFQSESEKK 670
Query: 367 AIKTSQA 373
QA
Sbjct: 671 NSSILQA 677
>gi|346978687|gb|EGY22139.1| ATP-dependent RNA helicase DRS1 [Verticillium dahliae VdLs.17]
Length = 748
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 140/232 (60%), Gaps = 20/232 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
+C+T + + +IF K++AH I+ GLLG+ ELHG++ Q R++S+ F+D +
Sbjct: 457 FICKTLYTERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVS 516
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+G+ TVINY P LE Y+HRVGRTARAG+ GV+V++A E DRK+V
Sbjct: 517 YLLATDLASRGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVV 576
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K +K K + R+I G DK++ KV+ +E E+++I E
Sbjct: 577 KAAVKAGKAQGAKILSRVIEAGE----------------ADKWQDKVDEMEEEIEEINEE 620
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAGE 375
EK +R L + + QV K E ++ + + P R WF+++K++ + K + E
Sbjct: 621 EKEERQLAQVEMQVRKGENLINHEDEIKSRPRRTWFESEKDKKSAKEAGRAE 672
>gi|302417364|ref|XP_003006513.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
gi|261354115|gb|EEY16543.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
Length = 757
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 140/232 (60%), Gaps = 20/232 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
+C+T + + +IF K++AH I+ GLLG+ ELHG++ Q R++S+ F+D +
Sbjct: 466 FICKTLYTERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSVEDFRDGKVS 525
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+G+ TVINY P LE Y+HRVGRTARAG+ GV+V++A E DRK+V
Sbjct: 526 YLLATDLASRGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKVV 585
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K +K K + R+I G DK++ KV+ +E E+++I E
Sbjct: 586 KAAVKAGKAQGAKILSRVIEAGE----------------ADKWQDKVDEMEEEIEEINEE 629
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAGE 375
EK +R L + + QV K E ++ + + P R WF+++K++ + K + E
Sbjct: 630 EKEERQLAQVEMQVRKGENLINHEDEIKSRPRRTWFESEKDKKSAKEAGRAE 681
>gi|390370365|ref|XP_787544.3| PREDICTED: probable ATP-dependent RNA helicase DDX27-like, partial
[Strongylocentrotus purpuratus]
Length = 235
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 118/173 (68%), Gaps = 16/173 (9%)
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R+E LR FK++ D+L+ATD+AARGLDI GVKTVIN+ MP+S +HY+HRVGRTARAG+ G
Sbjct: 1 RMEMLRMFKEDLIDILVATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSG 60
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
SVS+AGE +R+++K+++K AKNPVK RIIP G +V KYR K+ +
Sbjct: 61 RSVSLAGEKERRMLKELVKRAKNPVKSRIIPQG----------------VVAKYRDKIAS 104
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+E +++++L E+ ++ + + Q+ KA ML + P R WFQ+ KER
Sbjct: 105 LEEDIEEVLRLEREEKEMRTTELQLQKATMMLNHHSEIMSRPKRSWFQSHKER 157
>gi|378728301|gb|EHY54760.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 813
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 151/241 (62%), Gaps = 19/241 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R A L L F + T+IF K+EAH + I+ GLLG+KAGELHG+++Q
Sbjct: 509 RLRPGRENLRLATLCVLCKNFFTERTIIFFRQKKEAHRVRIVFGLLGLKAGELHGSMSQE 568
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ ++ F++ +T L+ATD+A+RGLDI+ V TV+NY P + E Y+HRVGRTARAG+
Sbjct: 569 QRISAVNAFREGKTTHLLATDLASRGLDIKNVMTVVNYEAPQTHEIYLHRVGRTARAGRS 628
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+V+ +K+A+ V R++ A+ VD A
Sbjct: 629 GRACTIAAEPDRKVVRAAVKSARQQGAKVVSRVVD----------------AQEVDAMNA 672
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
++EA+E E+++IL EEK ++ L++ ++Q+++ E ++K + + P R WF+T+KE+
Sbjct: 673 QIEAMESEIEEILKEEKEEKQLSQVEQQLTRGENLVKHEAEIMARPKRTWFETEKEKQQA 732
Query: 369 K 369
K
Sbjct: 733 K 733
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 149/265 (56%), Gaps = 21/265 (7%)
Query: 118 FLLRPP----VLLCLLCFRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEM 170
++ PP L RIRK +L + ALL L+ + + ++FV K AH++
Sbjct: 442 IMIDPPKQAAAKLVQEFVRIRKRDNL-KPALLYTLIRKLDGAGQKRIVVFVARKETAHKL 500
Query: 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230
I+LGLLG GELHG+LTQ RL+S+ KFK E VL+ TD+A+RGLDI ++ VINY
Sbjct: 501 RIILGLLGQSVGELHGSLTQEQRLDSVNKFKSLEVPVLLCTDLASRGLDIPKIEVVINYD 560
Query: 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPR 288
MP S E Y+HRVGRTARAG+ G SV+ GE DR +V+ I++ + + G
Sbjct: 561 MPKSYEIYLHRVGRTARAGREGRSVTFVGEASQDRVIVRSAIRSVEENIGR-----GKAL 615
Query: 289 LKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK 348
+ + V++ +E ++ + +IL EEK ++ + +A+ ++ K+E +LK K
Sbjct: 616 GRNVDWNQ------VEETNKLIEKMDTTIDEILDEEKQEKEIIRAEMELKKSENLLKHKS 669
Query: 349 PLHENPPREWFQTKKERAAIKTSQA 373
+ P R WFQT+ E+ K A
Sbjct: 670 EIQSRPKRTWFQTETEKKNAKIFDA 694
>gi|158514833|sp|A3LSN3.3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
Length = 741
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 143/240 (59%), Gaps = 19/240 (7%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + + ++FV K AH++ I+LGLLG+K ELHG+L
Sbjct: 447 RIRKRDHL-KPALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSL 505
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL ++ FK VLI TD+AARGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 506 TQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARA 565
Query: 249 GKGGVSVSMAGE--VDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK 305
G+ G S+S GE DR +VK IK+ + VK + + + V++
Sbjct: 566 GRDGTSISFVGESTSDRNIVKDAIKSLEGGEVKGKAVSRNIDWVD------------VEQ 613
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE+ + ++++L EEK + + +A+ Q++KA M+K +K + P R WF+++K++
Sbjct: 614 LNKIVESKQEIIEEVLDEEKQAKEILQAEMQLAKASNMMKHEKEIQSRPKRTWFESEKDK 673
>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits [Scheffersomyces stipitis CBS 6054]
gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits, partial [Scheffersomyces stipitis CBS 6054]
Length = 672
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 143/240 (59%), Gaps = 19/240 (7%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + + ++FV K AH++ I+LGLLG+K ELHG+L
Sbjct: 384 RIRKRDHL-KPALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSL 442
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL ++ FK VLI TD+AARGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 443 TQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARA 502
Query: 249 GKGGVSVSMAGE--VDRKLVKQVIKNAK-NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK 305
G+ G S+S GE DR +VK IK+ + VK + + + V++
Sbjct: 503 GRDGTSISFVGESTSDRNIVKDAIKSLEGGEVKGKAVSRNIDWVD------------VEQ 550
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE+ + ++++L EEK + + +A+ Q++KA M+K +K + P R WF+++K++
Sbjct: 551 LNKIVESKQEIIEEVLDEEKQAKEILQAEMQLAKASNMMKHEKEIQSRPKRTWFESEKDK 610
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 145/243 (59%), Gaps = 17/243 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ++L L+ + T + ++FV K AH + I+LGLLGI GELHG+L
Sbjct: 443 RIRKRDHL-KPSVLFHLIKKLDGTGQKRMVVFVARKEMAHRLRIILGLLGISVGELHGSL 501
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
+Q RL+S+ +FK E +L+ TD+A+RGLDI ++ VINY MP + E Y+HRVGRTARA
Sbjct: 502 SQEQRLQSVNQFKSLEVPILVCTDLASRGLDIPKIEVVINYDMPKNYEVYLHRVGRTARA 561
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SVS+ GE DR +V+ IK+ + + + ++ + V++
Sbjct: 562 GREGRSVSLVGESSQDRSVVRSAIKSVEESSEGQTAA-----VRNIDWNN------VEEI 610
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERA 366
V ++EG + +IL EEK ++ + +A+ ++ K E +LK K + P R WF ++ E+
Sbjct: 611 NKLVVSMEGTIDEILEEEKGEKEILRAEMELRKGENLLKHKAEIEARPKRTWFNSEAEKK 670
Query: 367 AIK 369
K
Sbjct: 671 NAK 673
>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans CBS 6340]
Length = 739
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 145/255 (56%), Gaps = 33/255 (12%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKD----HTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+RK L + ALL L+ R D ++FV K AH++ I+LGLLG+K ELHG+
Sbjct: 447 RVRKRDEL-KPALLFHLI-RKLDDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGS 504
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
L+Q RL+++ FK + VLI TD+A+RGLDI ++ VINY MP + + Y+HRVGRTAR
Sbjct: 505 LSQEQRLQAVNGFKSLQVPVLICTDLASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTAR 564
Query: 248 AGKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK 305
AG+ G S+S GE DR +VK IK+A+ K + + +VD
Sbjct: 565 AGREGRSISFVGESSQDRNVVKNAIKSAEENKKQDTV----------------VGRMVD- 607
Query: 306 YRAKVEAI-------EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREW 358
AKVE I + + +IL EEK ++ + +A+ +V K E MLK K + P R W
Sbjct: 608 -WAKVEEINKLTTNKDDVIAEILEEEKQEKEILRAEMEVRKGENMLKHKDEISARPRRTW 666
Query: 359 FQTKKERAAIKTSQA 373
FQT+ E+ K QA
Sbjct: 667 FQTEGEKKNSKVIQA 681
>gi|340518289|gb|EGR48530.1| predicted protein [Trichoderma reesei QM6a]
Length = 787
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 145/246 (58%), Gaps = 21/246 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L + + + +IF K++AH I+ GLLG ELHG++ Q
Sbjct: 474 RLRPGREEKRMGYLVHICKNLYTERVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQT 533
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F+D + + L+ATD+A+RGLDI+GV TVINY P S+E Y+HRVGRTARAG+
Sbjct: 534 QRIASVESFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRA 593
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK---NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G SV++A E DRK+VK +K K + + R+I A+ DK++A
Sbjct: 594 GTSVTLAAEPDRKVVKAAVKAGKAQGSKIISRVIE----------------AKDADKWQA 637
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
+++ +E E+++I EEK +R L + + Q+ K E +++ + + P R WF+T++++
Sbjct: 638 EIDGMEDEIEEIEREEKEERQLAQVEMQIKKGENIIQHEAEIKSRPKRTWFETQQDKKNA 697
Query: 369 KTSQAG 374
K QAG
Sbjct: 698 K--QAG 701
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 39/298 (13%)
Query: 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------ 130
EE N EI+ S+ T +A+MTS + L PV L +
Sbjct: 461 EELN---EILTTIPKSRQTMLFSATMTSSVDKLIRLGLNKPVRLMVDSKKQTVGTLVQEF 517
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + + ++F K+EAH + I+ GL+G+KA ELHG+++Q
Sbjct: 518 VRLRPGREDKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQ 577
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 578 EQRIKSVEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGR 637
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK+ +K + + R+I P + DK+
Sbjct: 638 SGRACTIAAEPDRKVVKEAVKAGRAQGAKIVSRVIEPA----------------VADKWA 681
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+V + EV+++L EEK ++ L +A+ QV++ + ++ ++ + P R WF+++KE+
Sbjct: 682 EQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKEK 739
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 145/226 (64%), Gaps = 20/226 (8%)
Query: 148 LVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
+C+T + + ++F K+EAH + I+ GL+G+KA ELHG+++Q R++S+ F+D +
Sbjct: 535 FLCKTVYTNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 594
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A E DRK+V
Sbjct: 595 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 654
Query: 267 KQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
K+ +K + + R+I P + DK+ +V+ + EV+++L E
Sbjct: 655 KEAVKAGRAQGAKIVSRVIEPA----------------VADKWAEQVDDLATEVEEVLQE 698
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
EK ++ L +A+ QV++ + ++ ++ + P R WF+++K++ A K
Sbjct: 699 EKEEKQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDKRASK 744
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 21/244 (8%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L+ + T + ++FV K AH + I+LGLLG+ ELHG+L
Sbjct: 438 RIRKRDHL-KPALLYNLIRKLDSTGQKRIVVFVSRKEVAHRLRIILGLLGMGVAELHGSL 496
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
+Q RL+S+ KFK + VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 497 SQEQRLDSVNKFKSLDVPVLICTDLASRGLDIPKIEIVINYDMPKSYEIYLHRVGRTARA 556
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE +R +V+ IK+ ++ K +P L VD
Sbjct: 557 GREGRSVTFVGESSQERAIVRDAIKSVEDTNK---VPKN-------GHTGRALGRNVDWN 606
Query: 307 RAK-----VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+ + VE V IL EEK ++ + +A+ Q+ K + MLK K + P R WFQT
Sbjct: 607 QVEETNKVVEKNIDTVDDILVEEKQEKEIIRAEMQLKKGQNMLKYKDEIQSRPRRTWFQT 666
Query: 362 KKER 365
+ E+
Sbjct: 667 ESEK 670
>gi|223590197|sp|A5DKW3.2|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 16/238 (6%)
Query: 132 RIRKDTHLDRKAL--LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
RIRK HL L L LV ++ ++FV K AH + I+LGLLG+K ELHG+LT
Sbjct: 423 RIRKREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLT 482
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q RL+S++ F+ VLI TD+AARGLDI ++ VIN+ MP + E Y+HRVGRTARAG
Sbjct: 483 QEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAG 542
Query: 250 KGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
+ G S++ GE DR +VK IK+ + + + +T + V++
Sbjct: 543 REGRSITFVGESNQDRSIVKDAIKSLEEQKNGKAVS------RTVDWKK------VEELN 590
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ VE+ + + ++L EEK + + +A+ Q+ KA ++K +K +H P R WFQ+++E+
Sbjct: 591 SIVESKKDTIDEVLEEEKSAKEILQAEMQLEKASNIMKHEKEIHSRPKRTWFQSEQEK 648
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 148/244 (60%), Gaps = 19/244 (7%)
Query: 123 PVLLCLLCFRIRKDTHLDRKALLAALVCRTFKD-HTMIFVPTKREAHEMHILLGLLGIKA 181
P+ L +I+ ++A L +L+ R+FK T++F TK +AH + I+LGL IKA
Sbjct: 425 PMTLTEEIVKIKPQFVAKKEAHLLSLLSRSFKGKETIVFAKTKVQAHRLKIVLGLSNIKA 484
Query: 182 GELHGNLTQPSRLESLRKFK-DEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
ELHG++TQ RL +L F+ + ET +++ATDVAARGLDI V V++Y P ++ Y+H
Sbjct: 485 CELHGDMTQTQRLAALEDFRSNAETKIMVATDVAARGLDIASVDLVVSYDAPKNVASYLH 544
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLA 300
RVGRTARAG+ GV+++ E DR LVK + K + ++ RI+P
Sbjct: 545 RVGRTARAGRKGVAITFMEEYDRALVKTLQKRGQK-LQSRIVP----------------R 587
Query: 301 EIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
++VD++ K+E ++++I EE+ ++ + KA+ + +KAE ML+ + P + WF+
Sbjct: 588 DVVDEWHEKIEGYAAQIEEIEEEERAEKHMQKAEMEATKAENMLEHANEIKSRPKKTWFE 647
Query: 361 TKKE 364
++++
Sbjct: 648 SERD 651
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 135/220 (61%), Gaps = 14/220 (6%)
Query: 147 ALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET 205
A +C+T +++ +IF K+EAH I+ GLLG+ ELHG++ Q R+ S+ +F+D +
Sbjct: 492 AYICKTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRDGKV 551
Query: 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL 265
L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+ G ++++A E DRK+
Sbjct: 552 SYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPDRKV 611
Query: 266 VKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEK 325
VK +K AK + A DK++ +++ ++ E+ +I+ EEK
Sbjct: 612 VKAAVKAAKAQGAKVV-------------SRAIDASEADKFQNEIDEMDDEIDEIMQEEK 658
Query: 326 HDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++ L + QV K E +++ + + P R WF+T+ ++
Sbjct: 659 EEKHLAHVEMQVRKGENLIEHEADIKSRPKRTWFETEHDK 698
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 146/266 (54%), Gaps = 31/266 (11%)
Query: 118 FLLRPP----VLLCLLCFRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEM 170
++ PP L RIRK L + ALL L+ + + + ++FV K AH +
Sbjct: 426 IMINPPKQAAARLTQEFVRIRKRDLL-KPALLYYLIRKLDSSSQKRIVVFVSRKEMAHRL 484
Query: 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230
I++GLLG+K ELHG+LTQ RL+S+ +FK E VLI TD+A+RGLDI ++ VINY
Sbjct: 485 RIIMGLLGMKVAELHGSLTQEQRLQSVNQFKSLEVPVLICTDLASRGLDIPKIEVVINYD 544
Query: 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNA-----KNPVKHRIIP 283
MP S E Y+HRVGRTARAG+ G SV+ GE DR +V+ IK+A +N V R +
Sbjct: 545 MPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIKSAEEGENQNQVLGRNVE 604
Query: 284 PGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKM 343
VD+ +++ + IL EEK ++ + +A+ ++ K E +
Sbjct: 605 WNK----------------VDEVSKLIDSNGETIDDILDEEKQEKEILRAEMELRKGENL 648
Query: 344 LKEKKPLHENPPREWFQTKKERAAIK 369
+K K + P R WFQT+ E+ K
Sbjct: 649 MKHKTEIQARPRRTWFQTEDEKKNAK 674
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 142/237 (59%), Gaps = 19/237 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R LA + + + +IF K++AH I+ GLLG ELHG++ Q
Sbjct: 468 RLRPGREEKRMGYLAHICKNFYTEKVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQT 527
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P S+E Y+HRVGRTARAG+
Sbjct: 528 QRIASVENFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRT 587
Query: 252 GVSVSMAGEVDRKLVKQVIKNAK---NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G+SV++A E DRK+VK +K K + + RII A+ DK++A
Sbjct: 588 GISVTLAAEPDRKVVKAAVKAGKAQGSKIISRIIE----------------AKDADKWQA 631
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++ ++ E+++I EEK +R L + + Q+ K+E ++K + + P R WF+T+ ++
Sbjct: 632 EIDEMDDEIEEIEKEEKEERQLAQVEMQIKKSENIIKHEDEIKARPKRTWFETQHDK 688
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 138/220 (62%), Gaps = 20/220 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + +IF K+ AH+M I+ GL G+ ELHG++ Q R++S+ F+D + +
Sbjct: 533 ICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNF 592
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P + E Y+HRVGRTARAG+ G ++++A E DRK+VK
Sbjct: 593 LLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 652
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K+ + RII P DK++A+++ +E E+++I+ EE
Sbjct: 653 AAVKAGKSQGAKISSRIIDPAD----------------ADKWQAEIDELEDEIEEIMQEE 696
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
K ++ L + QV K E M+K + + P R WF+T+++
Sbjct: 697 KEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQED 736
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 138/220 (62%), Gaps = 20/220 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + +IF K+ AH+M I+ GL G+ ELHG++ Q R++S+ F+D + +
Sbjct: 533 ICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNF 592
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P + E Y+HRVGRTARAG+ G ++++A E DRK+VK
Sbjct: 593 LLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 652
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K+ + RII P DK++A+++ +E E+++I+ EE
Sbjct: 653 AAVKAGKSQGAKISSRIIDPAD----------------ADKWQAEIDELEDEIEEIMQEE 696
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
K ++ L + QV K E M+K + + P R WF+T+++
Sbjct: 697 KEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQED 736
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 138/220 (62%), Gaps = 20/220 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + +IF K+ AH+M I+ GL G+ ELHG++ Q R++S+ F+D + +
Sbjct: 532 ICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNF 591
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P + E Y+HRVGRTARAG+ G ++++A E DRK+VK
Sbjct: 592 LLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 651
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K+ + RII P DK++A+++ +E E+++I+ EE
Sbjct: 652 AAVKAGKSQGAKISSRIIDPAD----------------ADKWQAEIDELEDEIEEIMQEE 695
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
K ++ L + QV K E M+K + + P R WF+T+++
Sbjct: 696 KEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQED 735
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 145/230 (63%), Gaps = 20/230 (8%)
Query: 140 DRKALLAALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D++ +C+T + + ++F K+EAH + I+ GL+G+KA ELHG+++Q R++S+
Sbjct: 529 DKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVE 588
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A
Sbjct: 589 DFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIA 648
Query: 259 GEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
E DRK+VK+ +K + + R+I P + DK+ +V +
Sbjct: 649 AEPDRKVVKEAVKAGRAQGAKIVSRVIEPA----------------VADKWAEQVNDLAT 692
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
EV+++L EEK ++ L +A+ QV++ + ++ ++ + P R WF+++K++
Sbjct: 693 EVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDK 742
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 36/302 (11%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
EI+ S+ T +A+MTS + L PV L + R+R
Sbjct: 431 NEILTTIPKSRQTMLFSATMTSSVDKLIRVGLNRPVRLMVDAQRSTVTTLVQEFVRLRPG 490
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
R L L + F + ++F K+EAH ++ GL G+KA ELHG+L+Q R+ S
Sbjct: 491 REDKRMGYLLYLCQKVFHNKVIVFFRQKKEAHRARVIFGLSGMKAAELHGSLSQEQRIAS 550
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+ G + +
Sbjct: 551 VEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYLHRVGRTARAGRSGRACT 610
Query: 257 MAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+A E DRK+VK +K A++ + R+I + D + AKV +
Sbjct: 611 LAAEPDRKVVKAAVKTARSQGAKIASRVIE----------------SNDADAFAAKVYGM 654
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQA 373
E++++L EEK D+ L +A+ Q+ K E ++ + + P R WF+++ ++ K S
Sbjct: 655 AEEIEEVLKEEKEDKQLAQAEMQLRKGENVMVHEDEIKSRPKRTWFESEADKRTAKKSGR 714
Query: 374 GE 375
E
Sbjct: 715 AE 716
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 138/220 (62%), Gaps = 20/220 (9%)
Query: 149 VCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C+T + + +IF K+ AH+M I+ GL G+ ELHG++ Q R++S+ F+D + +
Sbjct: 532 ICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNF 591
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
L+ATD+A+RGLDI+GV TVINY P + E Y+HRVGRTARAG+ G ++++A E DRK+VK
Sbjct: 592 LLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 651
Query: 268 QVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
+K K+ + RII P DK++A+++ +E E+++I+ EE
Sbjct: 652 AAVKAGKSQGAKISSRIIDPAD----------------ADKWQAEIDELEDEIEEIMQEE 695
Query: 325 KHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
K ++ L + QV K E M+K + + P R WF+T+++
Sbjct: 696 KEEKQLQNMEMQVKKGENMIKYEDEISSRPKRTWFETQED 735
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 145/230 (63%), Gaps = 20/230 (8%)
Query: 140 DRKALLAALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D++ +C+T + + ++F K+EAH + I+ GL+G+KA ELHG+++Q R++S+
Sbjct: 527 DKRLGYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVE 586
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A
Sbjct: 587 DFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIA 646
Query: 259 GEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
E DRK+VK+ +K + + R+I P + DK+ +V +
Sbjct: 647 AEPDRKVVKEAVKAGRAQGAKIVSRVIEPA----------------VADKWAEQVNDLAT 690
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
EV+++L EEK ++ L +A+ QV++ + ++ ++ + P R WF+++K++
Sbjct: 691 EVEEVLQEEKEEKQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDK 740
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 150/261 (57%), Gaps = 27/261 (10%)
Query: 119 LLRPP----VLLCLLCFRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMH 171
++ PP + L RIRK HL + ALL L+ + ++ ++FV K AH++
Sbjct: 466 MIDPPKSAAIKLVQEFVRIRKRDHL-KPALLFQLIKSVDPSQQNRIVVFVARKESAHKLR 524
Query: 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM 231
I+LGLLG++ ELHG+LTQ RL S+ FK+ VLI TD+AARGLDI ++ VINY M
Sbjct: 525 IILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINYDM 584
Query: 232 PHSLEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKN-----AKNPVKHRIIPP 284
P + E Y+HRVGRTARAG+ G S++ GE DR +VK IK+ A+N + + +
Sbjct: 585 PKTHEIYLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGKAVSR 644
Query: 285 GYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML 344
+ V++ VE+ ++++L EEK + + A+ ++SKA M+
Sbjct: 645 NVDWKE------------VEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKATNMI 692
Query: 345 KEKKPLHENPPREWFQTKKER 365
K +K + P R WF+++K++
Sbjct: 693 KHEKEIQSRPRRTWFESEKDK 713
>gi|449296384|gb|EMC92404.1| hypothetical protein BAUCODRAFT_27693 [Baudoinia compniacensis UAMH
10762]
Length = 699
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 142/246 (57%), Gaps = 19/246 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + +D +IF K+EAH + ++ L +KA ELHG+++Q
Sbjct: 415 IRLRPGREEKRLGYLMHLCTQVHRDRVIIFFRQKKEAHRVRVIFALCDLKAAELHGSMSQ 474
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ ++ +F+ L+ATD+A+RGLDI+G++TVINY P + E Y+HRVGRTARAG+
Sbjct: 475 EQRINAIERFRSGRASFLLATDLASRGLDIKGIETVINYEAPQTHEIYLHRVGRTARAGR 534
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKN---PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G++ ++A E DRK+VK +K AK V+ R + E D ++
Sbjct: 535 KGIACTLAAEPDRKIVKAAVKAAKAHGAQVRQRTVDK----------------EDADAWQ 578
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+ + + E++ +L EEK +R++ + + +++AE ++K + + P + WF+++KE+ A
Sbjct: 579 KRCDDLHDEIEDVLREEKEERVMQQTERDITRAENVVKYEDEIKARPKKTWFESEKEKVA 638
Query: 368 IKTSQA 373
K A
Sbjct: 639 AKKRGA 644
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 32/236 (13%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK HL + ALL L+ + ++FV K AH++ I+LGLLG+K ELHG L+Q
Sbjct: 337 RIRKRDHL-KPALLYQLL-KGVSTRVVVFVARKETAHKLRIVLGLLGLKVSELHGALSQE 394
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++++ FK + VLI TD+AARGLDI ++ VINY MP + E Y+HRVGRTARAG+
Sbjct: 395 QRLQNVKNFKSLDVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRD 454
Query: 252 GVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S++ GE +R +VK I N K +A+ VD +A+
Sbjct: 455 GTSITFVGESSQERAIVKAAIVNGKG-----------------------VAKTVDWNQAE 491
Query: 310 -----VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+ + E + ++L EEK + L +A+ +++KA ++K ++ +H P R WF+
Sbjct: 492 QTSKIISSKESVIDEVLQEEKEAKELLRAEMELTKASNLIKHEQEIHSRPKRTWFK 547
>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
gi|142982514|sp|A1CNV8.1|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
Length = 826
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 149/247 (60%), Gaps = 19/247 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L F ++F K+EAH + I+ GLLG+KA ELHG+++Q
Sbjct: 529 RLRPGREGKRLGYLLYLCSEIFTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQE 588
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F++ + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 589 QRIKSVESFREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRS 648
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A + DRK+VK ++ K + R++ P + D++ A
Sbjct: 649 GRACTIAADPDRKVVKAAVRAGKAQGAKIASRVVEPA----------------VADQWAA 692
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
KVEA+E E++++L EEK ++ + +A+ QV+K E ++K + P R WF+T++++ A
Sbjct: 693 KVEALEEEIEEVLKEEKLEKHMAQAEMQVTKGENLMKHGAEIMSRPKRTWFETERDKRAS 752
Query: 369 KTSQAGE 375
+ A E
Sbjct: 753 RKLGATE 759
>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
gi|160380649|sp|A6RUH2.1|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
gi|347828004|emb|CCD43701.1| hypothetical protein [Botryotinia fuckeliana]
Length = 801
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 19/242 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + D ++F K+EAH I+ GL G+KA ELHG+++Q
Sbjct: 490 IRLRPGREGKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQ 549
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R++S+ F+D + L+ATD+A+RGLDI+GV TVINY P S + Y+HRVGRTARAG+
Sbjct: 550 EQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGR 609
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK +K ++ V R+I A D +
Sbjct: 610 SGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIE----------------ASEADSWS 653
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
KV+ + E+++IL EEK D++L +A+ +V K + + + + P R WF+T+KE+ A
Sbjct: 654 EKVDEMADEIEEILKEEKEDKILAQAEMEVRKGQNFIDHEAEIKGRPKRTWFETEKEKLA 713
Query: 368 IK 369
K
Sbjct: 714 AK 715
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 139/235 (59%), Gaps = 16/235 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RI D DR+A L AL+ + F + T+IFV TK + H + ILLGL + + ELHGNLTQ
Sbjct: 312 LRIDSDEEKDREATLIALLQQKFIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQ 371
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+++ FK+ + L+ATD+AARGLDI VK VIN+ +P+ YIHRVGRTAR G
Sbjct: 372 QQRIQAYEDFKEGKFQYLLATDLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGN 431
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
GVSV++ + + KQ+IK +K +L +F + EI ++ +
Sbjct: 432 QGVSVTICLKKEVSQFKQMIKESKQ------------KLFKLNFNIESIEEI----KSDL 475
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++E +++KI+ E ++ +++ + +A+ +++ + + P +EW Q+ +++
Sbjct: 476 KSLEPKIKKIIKGEVFEKEIHQTEILAQRAQNLIQHRVEIMRKPKKEWIQSAQQK 530
>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 16/238 (6%)
Query: 132 RIRKDTHLDRKAL--LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
RIRK HL L L LV ++ ++FV K AH + I+LGLLG+K ELHG+LT
Sbjct: 423 RIRKREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLT 482
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q RL+S++ F+ VLI TD+AARGLDI ++ VIN+ MP + E Y+HRVGRTARAG
Sbjct: 483 QEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAG 542
Query: 250 KGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
+ G S++ GE DR +VK IK+ + + + +T + V++
Sbjct: 543 REGRSITFVGESNQDRSIVKDAIKSLEEQKNGKAVS------RTVDWKK------VEELN 590
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ VE+ + + ++L EEK + + +A+ Q+ KA ++K +K +H P R WFQ+++E+
Sbjct: 591 SIVESKKDTIDEVLEEEKLAKEILQAEMQLEKASNIMKHEKEIHSRPKRTWFQSEQEK 648
>gi|349805347|gb|AEQ18146.1| putative atp-dependent rna helicase ddx27 [Hymenochirus curtipes]
Length = 443
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 16/172 (9%)
Query: 202 DEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261
DE+ D+L+ATDVAARGLDI+GVKTVIN MP +L+HY+HRVGRTARAGK G SVS+ GE
Sbjct: 230 DEQIDILVATDVAARGLDIQGVKTVINLTMPGTLKHYVHRVGRTARAGKAGKSVSLVGEE 289
Query: 262 DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKIL 321
+RK++K+++K A+ PVK R +P +++ K+R ++ +E E+ +L
Sbjct: 290 ERKMLKEIVKKAQAPVKARTLPQ----------------DVISKFRDRIGKMEKEIYAVL 333
Query: 322 TEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQA 373
EK ++ + K++ Q+S A+K L+ + R WFQTK+ER K S A
Sbjct: 334 QLEKEEKEMQKSEAQISLAKKKLQPEDTEAARQDRSWFQTKEERRKEKLSHA 385
>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
Length = 1234
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 141/234 (60%), Gaps = 23/234 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A++AAL ++ + +I T++ AH MHILLGLLG+K ELHG+++Q
Sbjct: 329 RIRPGREGDREAMVAAL-NKSLR-MLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQT 386
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RLE+L FK+ +++ TDVAARGLDI V+TVIN +P++ + Y+HRVGRTARAGK
Sbjct: 387 ARLEALANFKNGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQ 446
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+S+ GE + K++K +IK +K K R + E+V ++ K+
Sbjct: 447 GRSISLVGESEWKILKMIIKASKTSCKTRTLA----------------TEVVTNFKTKLN 490
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E +V+KI+ E + L + QV+ A + K + N R WFQTK ER
Sbjct: 491 EYESKVKKIIDMENEEAALAAIENQVNAA-----KNKVIRPNEKRGWFQTKYER 539
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 141/234 (60%), Gaps = 23/234 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A++AAL ++ + +I T++ AH MHILLGLLG+K ELHG+++Q
Sbjct: 878 RIRPGREGDREAMVAAL-NKSLR-MLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQT 935
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RLE+L FK+ +++ TDVAARGLDI V+TVIN +P++ + Y+HRVGRTARAGK
Sbjct: 936 ARLEALANFKNGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQ 995
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311
G S+S+ GE + K++K +IK +K K R + E+V ++ K+
Sbjct: 996 GRSISLVGESEWKILKMIIKASKTSCKTRTLA----------------TEVVTNFKTKLN 1039
Query: 312 AIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E +V+KI+ E + L + QV+ A + K + N R WFQTK ER
Sbjct: 1040 EYESKVKKIIDMENEEAALAAIENQVNAA-----KNKVIRPNEKRGWFQTKYER 1088
>gi|361126045|gb|EHK98061.1| putative ATP-dependent RNA helicase drs1 [Glarea lozoyensis 74030]
Length = 678
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 19/248 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + D ++F K+EAH ++ GL G+KA ELHG+++Q
Sbjct: 371 IRLRPGRETKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARVIFGLSGLKATELHGSMSQ 430
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P S E Y+HRVGRTARAG+
Sbjct: 431 EQRIISVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHEIYLHRVGRTARAGR 490
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK +K+ ++ + R+I A D +
Sbjct: 491 QGRACTLAAEPDRKIVKAAVKSGRSQGAKIVSRVIE----------------AADADTWA 534
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
KVE ++ E+++IL EEK D+ L + + QV K E M+ + + P R WF+++ E+ A
Sbjct: 535 EKVEEMQDEIEEILKEEKEDKQLAQVEMQVRKGENMINHEDEIKGRPKRTWFESEVEKTA 594
Query: 368 IKTSQAGE 375
K + E
Sbjct: 595 AKKAGRAE 602
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 149/239 (62%), Gaps = 24/239 (10%)
Query: 141 RKALLAALVCRTFKDH--TMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESL 197
++A+ AL R+F D T++F TK +AH + IL GL G+ A ELHGN++Q +RLESL
Sbjct: 382 KEAVCLALCARSFGDRGRTIVFCSTKTKAHRLKILFGLAGLPPAAELHGNMSQTARLESL 441
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ +T L+ATDVAARGLDI+GV+ V+NY P LE Y+HR+GRTARAG GV+V++
Sbjct: 442 ESFRRGDTAFLLATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTL 501
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEV 317
+ DR L+K++ K + R++P A V +++++VE +E +V
Sbjct: 502 VEDGDRGLLKELGKKVG---RARLVP----------------AAAVVQWQSRVERLERDV 542
Query: 318 QKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER--AAIKTSQAG 374
+ IL EE+ + L KA+ + +KA M++ + + P R WF T+K++ A +++QA
Sbjct: 543 RAILAEERDEADLRKAEMEANKAVNMMEHESEIMSRPKRTWFVTEKQKRELAARSAQAA 601
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 150/252 (59%), Gaps = 23/252 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R+ R A L + + + + ++F K+EAH + ++ L G+KA ELHGN++Q
Sbjct: 498 RLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQE 557
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+ ++ L+ATDVA+RGLDI+ V TVINY P S E Y+HRVGRTARAG+
Sbjct: 558 QRIQSVEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRS 617
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VKQ +K +++ V R +P E D++
Sbjct: 618 GRACTLAAEPDRKVVKQAVKASRDQGAKVVSRQVP----------------IEETDRWMK 661
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K++ +E E++++L EEK +RLL+ + + + E ++ + + P R WF+++K++ A
Sbjct: 662 KIKDLEDEIEEVLKEEKEERLLSVTERDLKRGENLITHEDEIKSRPRRTWFESEKDKMAE 721
Query: 369 KTSQAGEGLAAL 380
+ +G AAL
Sbjct: 722 RE----KGAAAL 729
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 164/298 (55%), Gaps = 39/298 (13%)
Query: 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------ 130
EE N EI+ S+ T +A+MTS + L P+ L +
Sbjct: 458 EELN---EILTTIPKSRQTMLFSATMTSSVDKLIRVGLNKPIRLMVDSKKQTVGTLVQEF 514
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R A L L + ++F K+EAH + I+ GL+G+KA ELHG+++Q
Sbjct: 515 VRLRPGREDKRLAYLMFLCKTVYTSRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQ 574
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R++S+ F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+
Sbjct: 575 EQRIKSVEDFRDGKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGR 634
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK+ +K + + R+I P + DK+
Sbjct: 635 SGRACTIAAEPDRKVVKEAVKAGRAQGAKIVSRVIDPA----------------MADKWA 678
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+V + EV+++L EEK ++ L +A+ QV++ + ++ + + P R WF+++K++
Sbjct: 679 EQVNDLATEVEEVLQEEKEEKQLAQAEMQVTRGKNLIGHQDEIMSRPKRTWFESEKDK 736
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 150/252 (59%), Gaps = 23/252 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R+ R A L + + + + ++F K+EAH + ++ L G+KA ELHGN++Q
Sbjct: 498 RLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQE 557
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++S+ F+ ++ L+ATDVA+RGLDI+ V TVINY P S E Y+HRVGRTARAG+
Sbjct: 558 QRIQSVEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRS 617
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VKQ +K +++ V R +P E D++
Sbjct: 618 GRACTLAAEPDRKVVKQAVKASRDQGAKVVSRQVP----------------IEETDRWMK 661
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K++ +E E++++L EEK +RLL+ + + + E ++ + + P R WF+++K++ A
Sbjct: 662 KIKDLEDEIEEVLKEEKEERLLSVTERDLKRGENLITHEDEIKSRPRRTWFESEKDKMAE 721
Query: 369 KTSQAGEGLAAL 380
+ +G AAL
Sbjct: 722 RE----KGAAAL 729
>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
gi|160380650|sp|A7F4L5.1|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 801
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 19/242 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R L L + D ++F K+EAH I+ GL G+KA ELHG+++Q
Sbjct: 490 IRLRPGREGKRMGYLLYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQ 549
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R++S+ F+D + L+ATD+A+RGLDI+GV TVINY P S + Y+HRVGRTARAG+
Sbjct: 550 EQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGR 609
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
G + ++A E DRK+VK +K ++ V R+I A D +
Sbjct: 610 SGRACTIAAEPDRKVVKAAVKASRTQGAKVVSRVIE----------------ASEADSWS 653
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
KV+ + E+++IL EEK D++L +A+ +V K + + + + P R WF+++KE+ A
Sbjct: 654 EKVDEMADEIEEILKEEKEDKILAQAEMEVRKGQNFMDHEAEIKGRPKRTWFESEKEKLA 713
Query: 368 IK 369
K
Sbjct: 714 AK 715
>gi|344299490|gb|EGW29843.1| hypothetical protein SPAPADRAFT_157925 [Spathaspora passalidarum
NRRL Y-27907]
Length = 553
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 146/241 (60%), Gaps = 20/241 (8%)
Query: 131 FRIRKDTHLDRKALLAALVCRTF----KDHTMIFVPTKREAHEMHILLGLLGIKAGELHG 186
RIRK HL + ALL L+ +T ++ ++FV K AH++ I++GLLG+K ELHG
Sbjct: 264 IRIRKRDHL-KPALLFQLL-KTIDPKQQNRIVVFVSRKEMAHKLRIIIGLLGMKVSELHG 321
Query: 187 NLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTA 246
+LTQ RL+S+ FK+ VLI TD+A+RGLDI ++ VINY MP + E Y+HRVGRTA
Sbjct: 322 SLTQEQRLKSVSDFKNLVVPVLICTDLASRGLDIPKIEIVINYDMPKTHEVYLHRVGRTA 381
Query: 247 RAGKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
RAG+ GVS+S GE DR +VK IK+ + I K S + +I++
Sbjct: 382 RAGRDGVSISFVGESTQDRSIVKAAIKSIAEGNSGKAISRNVDWNKVES-----INKIIE 436
Query: 305 KYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
+K E IE ++L EEK + + +A+ +++KA ++K K + P R WF+++++
Sbjct: 437 ---SKKEIIE----EVLDEEKQAKEILQAEMELTKASNIIKHGKEIQARPKRTWFESERD 489
Query: 365 R 365
+
Sbjct: 490 K 490
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 167/307 (54%), Gaps = 40/307 (13%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
EI+ S+ T +A+MTS + + PV L + R+R+
Sbjct: 448 NEILTTIPKSRQTMLFSATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQG 507
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
R A L + + + + +IF K+EAH + ++ L G+KA ELHGN++Q R+++
Sbjct: 508 KEDRRLAYLMYICEKFYNERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQA 567
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
+ F+ ++ L+ATDVA+RGLDI+ V TVINY P + + Y+HRVGRTARAG+ G + +
Sbjct: 568 VEAFRSGKSAYLLATDVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACT 627
Query: 257 MAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+A E DRK+VKQ +K A++ V R +P E D++ K+ +
Sbjct: 628 LAAEPDRKVVKQAVKAARDQGAKVVQRQVP----------------VEETDRWMTKLRGL 671
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQA 373
E E++++L EEK +RLL+ + + + E ++ + + P R WF+++KE+ A +
Sbjct: 672 EEEIEEVLQEEKDERLLSITERDLKRGENLILHEDEIKARPRRVWFESEKEKIAERE--- 728
Query: 374 GEGLAAL 380
+G AAL
Sbjct: 729 -KGAAAL 734
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + AL+ L+ + + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 461 RIRKRDHL-KPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMGLLGMSVGELHGSL 519
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 520 TQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARA 579
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + V+K
Sbjct: 580 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------VEKT 630
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ +++IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ + ++
Sbjct: 631 NKLVESMGDTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQNESDK 689
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + AL+ L+ + + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 440 RIRKRDHL-KPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMGLLGMSVGELHGSL 498
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 499 TQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARA 558
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV+ GE DR +V+ IK+ + +++ + G + + V+K
Sbjct: 559 GREGRSVTFVGESSQDRSIVRAAIKSVE---ENKSLTQGKALGRNVDWVQ------VEKT 609
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE++ +++IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ + ++
Sbjct: 610 NKLVESMGDTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQNESDK 668
>gi|331219074|ref|XP_003322214.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301204|gb|EFP77795.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 785
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 23/230 (10%)
Query: 137 THLDRKALLAALVCRTF---KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
T + R+A+L L C+ K T+IF +K AH M I+ L +KA ELHGNL Q R
Sbjct: 485 TDVTRQAILVTL-CKASAFSKGRTIIFFRSKVGAHRMKIIFSLFSLKAEELHGNLNQQQR 543
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L+KFKD ET L+ATD+A+RGLDI+GV+ VINY P + Y+HR+GRTARAG G
Sbjct: 544 LAALQKFKDGETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGTKGS 603
Query: 254 SVSMAGEVDRKLVKQVIKN---AKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
++++ GE DRKL+K+ KN + +K+R + P +V + ++
Sbjct: 604 ALTLVGESDRKLIKEARKNCLATQGAIKNRRLDPN----------------LVKDVKEEL 647
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
E + + +I+ EEK ++ L ++ Q+ K + +++ + + P R WFQ
Sbjct: 648 EKLSSTIAEIIEEEKEEKELRNSEMQMKKCQNLIEHEDEIKSRPARTWFQ 697
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 143/246 (58%), Gaps = 21/246 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R LA + +K+ +IF K+EAH I+ GLLG+ ELHG++ Q
Sbjct: 481 RLRPGREEKRMGYLAHVCKNLYKERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQT 540
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P SLE Y+HRVGRTARAG+
Sbjct: 541 QRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRK 600
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G ++++A E DRK+VK +K K + R I A VD +A
Sbjct: 601 GTALTLASETDRKVVKAAVKAGKAQGAKIVSRQIE----------------AAEVDALQA 644
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
+++ ++ E+++I+ EEK ++ L + QV K E +++ + + P R WF+++ ++
Sbjct: 645 QIDEMDDEIEEIMQEEKEEKQLAHVEMQVKKGENLIQHEAEIKGRPRRTWFESEHDKK-- 702
Query: 369 KTSQAG 374
++ QAG
Sbjct: 703 QSKQAG 708
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 148/244 (60%), Gaps = 25/244 (10%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + +LL L+ + + ++FV K AH + I++GLLG+ GELHG+L
Sbjct: 450 RIRKRDHL-KPSLLFNLIRKLDPMGQKRIVVFVARKETAHRLRIVMGLLGMGVGELHGSL 508
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ KFK+ E VL+ TD+A+RGLDI ++ V+NY MP S E Y+HRVGRTARA
Sbjct: 509 TQEQRLDSVNKFKNLEVPVLVCTDLASRGLDIPKIEVVVNYDMPKSYEIYLHRVGRTARA 568
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G SV++ GE DR +V+ IK+ + + + + G L IVD
Sbjct: 569 GREGRSVTLVGESSQDRSIVRAAIKSVE---EDKSLTQG-----------KALGRIVDWV 614
Query: 307 RAK-----VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+ + VE++ +++IL EEK ++ + +A+ Q+ K E MLK KK + P R WFQ+
Sbjct: 615 QIEETNKLVESMSNTIEEILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQS 674
Query: 362 KKER 365
+ ++
Sbjct: 675 ESDK 678
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 144/244 (59%), Gaps = 27/244 (11%)
Query: 141 RKALLAALVCRTFKD-HTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLR 198
++A+ AL R+F T++F TK+ AH + IL GL + A ELHGN++Q +RLESL
Sbjct: 407 KEAVCVALCSRSFSSGRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLE 466
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+ +T L+ATDVAARGLDI+GV+ V+NY P LE Y+HR+GRTARAG GV+V++
Sbjct: 467 SFRRGDTAYLLATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTLV 526
Query: 259 GEVDRKLVKQVIKNAKN---------PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
+ DR L+K++ + ++ R++PP + V +++ +
Sbjct: 527 EDGDRPLLKELTRRVGGAGGGGGGGVTLRQRLVPP----------------QAVAQWQGR 570
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+E +E +V IL EE+ + L KA+ + +KA ML+ ++ + P R WF + +++ +K
Sbjct: 571 IERMESDVAAILAEERQEADLRKAEMEANKASNMLEHEEEIMARPKRTWFVSDRQKKELK 630
Query: 370 TSQA 373
A
Sbjct: 631 KRTA 634
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++A+L +L R+F +IF TK ++ +LL L G+K EL +LTQ RL+ L KF
Sbjct: 503 KQAILLSLCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKF 562
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
ETD L+ TDVA+RGLDI+GVKTVIN+ MP +L+ YIHRVGRTARAG GV+VSM+ E
Sbjct: 563 ASHETDFLVCTDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSE 622
Query: 261 VDRKLVKQVIKNAK---NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEV 317
+++++++++K V+ R+IP E ++ + K+E ++ ++
Sbjct: 623 SSIAILRKIVRHSKKKGQSVQQRVIP----------------TESIEFWTDKIEEMKPQL 666
Query: 318 QKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++ + + + + +A+ +K E + + ++ + P +EW +K +R
Sbjct: 667 KELEQQLRMEEEMQQAEMLAAKNENIEEFREDIMSRPRKEWIMSKAQR 714
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 163/307 (53%), Gaps = 41/307 (13%)
Query: 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSF------LFLLRPP-----------VLLCLLC 130
EE N EI+ S+ T +A+MTS + L RP L
Sbjct: 422 EELN---EILTTLPKSRQTMLFSATMTSSVDRLISIGLNRPARVMVNSQKKTVTTLVQEF 478
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
R+R R LA + +K+ +IF K++AH I+ GLLG+ ELHG++ Q
Sbjct: 479 VRLRPGREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQ 538
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P SL+ Y+HRVGRTARAG+
Sbjct: 539 TQRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGR 598
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
GV++++A E DRK+VK +K K + R + G VD ++
Sbjct: 599 KGVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGE----------------VDAFQ 642
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+++ ++ E+ +I+ EEK ++ L + QV K E M++ + + P R WF+++ ++
Sbjct: 643 TQIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQHEAEIKGRPRRTWFESEHDKK- 701
Query: 368 IKTSQAG 374
K+ QAG
Sbjct: 702 -KSKQAG 707
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 148/252 (58%), Gaps = 23/252 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R+ R A L + + + + ++F K+EAH + ++ L G+KA ELHGN++Q
Sbjct: 512 RLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQE 571
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R++++ F+ ++ L+ATDVA+RGLDI+ V TVINY P + E Y+HRVGRTARAG+
Sbjct: 572 QRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRS 631
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
G + ++A E DRK+VKQ +K ++ V R +P AE +K+
Sbjct: 632 GRACTLAAEPDRKVVKQAVKASREQGAKVVSRQVP----------------AEETEKWMK 675
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
K++++E E++++L EEK +R + + + + E ++ + + P R WF+T+KE+ A
Sbjct: 676 KIKSLEKEIEEVLEEEKEERAMTVTERDLKRGENLIVHEDEIKARPRRTWFETEKEKLAE 735
Query: 369 KTSQAGEGLAAL 380
K G AAL
Sbjct: 736 KE----RGAAAL 743
>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 747
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 34/293 (11%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
TEI+ ++ T +A+M S + L+ PV + + RIRK
Sbjct: 409 TEILSLLPLNRQTMLFSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRK- 467
Query: 137 THLDRKALLAALVCRTFKDHT--MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
+ ALL ++ H+ ++FV K AH + I LGLLG+K ELHG+LTQ RL
Sbjct: 468 RESSKPALLFNILSEMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRL 527
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
+++ FK+ +LI TD+AARGLDI ++ VIN+ MP + E Y+HRVGRTARAG+ G+S
Sbjct: 528 KAIVDFKNLTVPILICTDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLS 587
Query: 255 VSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
+S GE DR +VK+ IK + + I E V+K ++
Sbjct: 588 ISFVGESSQDRNIVKEAIKQVETENAGKAIGRNVN------------WENVEKIHRILQE 635
Query: 313 IEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E + +L EEK ++ L KA++++ K E ML ++ + P R WF T +++
Sbjct: 636 KESVIFDVLNEEKQEKELLKAEQEIKKGENMLNFEQEIKSRPKRTWFMTSQQK 688
>gi|395511818|ref|XP_003760148.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Sarcophilus harrisii]
Length = 531
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 139/226 (61%), Gaps = 23/226 (10%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D + +++ L TF + M+F TK+ AH MHILLG +G++ G L+G L+Q LE+LR
Sbjct: 236 DGETIVSILXTXTFTGYVMLFTQTKKXAHCMHILLGFMGLQVGLLNGXLSQTLYLEALRG 295
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKDE+ ++L TD AA LD++ VKTVIN+ +P++++HY++ V RT G+ G SVS+ G
Sbjct: 296 FKDEQINILGGTDEAAXELDVKDVKTVINFTVPNTIKHYVYLVDRTTCPGRTGHSVSLLG 355
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK 319
E + K++K+++K+AK PVK I+ +++ K++ K+E +E ++
Sbjct: 356 EEECKILKEIVKSAKAPVKXSIL----------------CQDLILKFKDKIEKMEKDMFA 399
Query: 320 ILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+L + ++ + ++ V+ A+ +L EK+ + WF +++ER
Sbjct: 400 VLRQWAEEKEMQYSEVHVNVAKXLLXEKECI-------WFLSEEER 438
>gi|354547460|emb|CCE44195.1| hypothetical protein CPAR2_504190 [Candida parapsilosis]
Length = 604
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 24/232 (10%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK +L + ALL L+ R ++FV K AH++ ++LGLLG+K ELHG LTQ
Sbjct: 348 RIRKRENL-KPALLFQLL-RKLDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQE 405
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +++ F + + +VL+ TD+AARGLDIR ++ V+N+ MP + E Y+HRVGRTARAG+
Sbjct: 406 QRLANMKLFMN-DVNVLVCTDLAARGLDIR-IEYVVNFDMPKTYEIYLHRVGRTARAGRK 463
Query: 252 GVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S++ GE DR +VK I N + S V+ +
Sbjct: 464 GTSITFVGESNQDRAIVKAAINNGR------------------SVARKVDWNDVEAINKR 505
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+E E + ++L EEK + + +A+ Q++KA ++K +K +H P R WF++
Sbjct: 506 IEEKESVIDEVLQEEKEAKEILRAEMQLNKASNLIKYEKDIHSRPKRTWFKS 557
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 144/244 (59%), Gaps = 15/244 (6%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK +L + ALL L+ + + ++FV K AH + I+LGLLG+ ELHG+L
Sbjct: 463 RIRKRDNL-KPALLFNLIRKLDSNAQKRIVVFVARKETAHRLRIILGLLGMAVAELHGSL 521
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RLES+ +FK + VLI TD+A+RGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 522 TQEQRLESVTRFKSLDVPVLICTDLASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTARA 581
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRL-KTPSFPPPPLAEIVDK 305
G+ G SV++ GE +R +V+ IK+ + ++I G L + + V++
Sbjct: 582 GREGRSVTLVGESSQERAIVRAAIKSVEET--NQISNNGGRALGRNVDWNQ------VEE 633
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
VE ++ +L EEK ++ + +A+ Q+ K E MLK KK + P R WFQT+ E+
Sbjct: 634 TNKLVEKSADTIEAVLVEEKEEKEILRAEMQLKKGENMLKHKKEIQARPRRTWFQTETEK 693
Query: 366 AAIK 369
K
Sbjct: 694 KNAK 697
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 142/246 (57%), Gaps = 21/246 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R LA + +K+ +IF K++AH I+ GLLG+ ELHG++ Q
Sbjct: 479 RLRPGREDKRMGYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQT 538
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P SL+ Y+HRVGRTARAG+
Sbjct: 539 QRISSVEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRK 598
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
GV++++A E DRK+VK +K K + R + G VD +
Sbjct: 599 GVALTIAAESDRKVVKAAVKAGKAQGAKIVSRQLDSGE----------------VDALQT 642
Query: 309 KVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAI 368
+++ ++ E+ +I+ EEK ++ L + QV K E M++ + + P R WF+++ ++
Sbjct: 643 QIDEMDDEIDEIMEEEKEEKQLAHVEMQVKKGENMIQHEAEIKGRPRRTWFESEHDKK-- 700
Query: 369 KTSQAG 374
K+ QAG
Sbjct: 701 KSKQAG 706
>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 17/239 (7%)
Query: 132 RIRKDTHLDRKALLAAL---VCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK + + ALL L V + + ++FV K AH + I+LGLLG+K ELHG+L
Sbjct: 461 RIRKKDEM-KPALLYYLLKSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSL 519
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL ++ FK+ VLI TD+AARGLDI ++ VINY MP S E Y+HRVGRTARA
Sbjct: 520 TQEQRLNNVNDFKNLTVPVLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARA 579
Query: 249 GKGGVSVSMAGE--VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G S++ GE DR +VK +K+ + + + +P V+ Y
Sbjct: 580 GREGRSITFVGEAAADRNIVKAAMKSLEESQSQQKAVS-----RNVDWPK------VEVY 628
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
V+ VQ++L EEK + + A+ +++KA+ ++K K + P R WF+++ E+
Sbjct: 629 HNVVQEKNDTVQEVLEEEKSAKEVLAAEMELAKADNLIKYGKDIQSRPRRTWFESESEK 687
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 36/300 (12%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC------------FRIRKD 136
EI+ S+ T +A+MTS + + PV L + R+R+
Sbjct: 456 NEILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMVDAKKQTVKGLTQEFVRLRQG 515
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
R A L + + + + ++F K+EAH + ++ L G+KA ELHGN++Q R+++
Sbjct: 516 KEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQA 575
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
+ F+ ++ L+ATDVA+RGLDI+ V TVINY P + E Y+HRVGRTARAG+ G + +
Sbjct: 576 VEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACT 635
Query: 257 MAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+A E DRK+VKQ +K ++ V R +P E +++ K++++
Sbjct: 636 LAAEPDRKVVKQAVKASREQGAKVVSRQVP----------------VEETERWMKKIKSM 679
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQA 373
E E++++L EEK +R + + + + E ++ + + P R WF+T+KE+ A K A
Sbjct: 680 EKEIEEVLEEEKEERAMTVTERDLKRGENLIVHEDEIKARPRRTWFETEKEKLAEKERSA 739
>gi|448528530|ref|XP_003869731.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis Co 90-125]
gi|380354084|emb|CCG23598.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 24/232 (10%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK L + ALL L+ R ++FV K AH++ ++LGLLG+K ELHG LTQ
Sbjct: 376 RIRKRESL-KPALLFQLL-RKLDGRIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQE 433
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +++ F + +VL+ TD+AARGLDIR ++ V+N+ MP + E Y+HRVGRTARAG+
Sbjct: 434 QRLANMKLFMG-DVNVLVCTDLAARGLDIR-IEYVVNFDMPKTYEIYLHRVGRTARAGRK 491
Query: 252 GVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S++ GE DR +VK I N + S V+ +
Sbjct: 492 GTSITFVGESNQDRAIVKAAINNGR------------------SVARKVDWNDVEAINKR 533
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
++ E V ++L EEK + + +A+ Q++KA ++K +K +H P R WF++
Sbjct: 534 IDEKESVVDEVLQEEKEAKEILRAEMQLNKASNLIKYEKDIHSRPKRTWFKS 585
>gi|358254115|dbj|GAA54145.1| ATP-dependent RNA helicase DDX27 [Clonorchis sinensis]
Length = 586
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 106/182 (58%), Gaps = 28/182 (15%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR DR A+L AL+ RTF T++F+PTK+E H MHILL L+G ELHG++TQ
Sbjct: 208 IRIRPHREEDRAAILVALLVRTFSKRTIVFLPTKKECHRMHILLSLIGHSCSELHGDMTQ 267
Query: 191 PSRLESLRKFKDE-------------------------ETDVLIATDVAARGLDIRGVKT 225
RLE+LR+F + + D+L+ATD+AARGLDI V+T
Sbjct: 268 AQRLEALRRFSESVDSHPAESASGNTASTKPVEDVPKPQVDILLATDLAARGLDIPNVQT 327
Query: 226 VINYRMPHSLEHYIHRVGRTARAGKGG-VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP 284
+INY +P +++ Y+HRVGRTARA G + S A + + L+ + A+NP R IP
Sbjct: 328 IINYNLPQTMKQYVHRVGRTARAANTGRLKTSYAWLICKTLL--TVNVARNPTDIREIPH 385
Query: 285 GY 286
Y
Sbjct: 386 RY 387
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 20/124 (16%)
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313
+VS+ GE DRKL+KQ+IK A PV+ R+I P E++ ++R K+E +
Sbjct: 423 AVSLVGENDRKLLKQIIKEAPYPVQARVISP----------------EVISRFREKLEKL 466
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPR----EWFQTKKERAAIK 369
+G V++IL E +R L A Q+ K EK++ E + P+ +WF +K + ++
Sbjct: 467 QGTVEEILAAEAEERELRAAQIQLDKTEKLMTEGSQPKRDVPKLKRVDWFVERKRQQKLE 526
Query: 370 TSQA 373
++
Sbjct: 527 ARKS 530
>gi|313222436|emb|CBY39356.1| unnamed protein product [Oikopleura dioica]
Length = 2006
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 128/208 (61%), Gaps = 20/208 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+I T++ AH MHILLGLLG+K ELHG+++Q +RLE+L FK+ +++ TDVAARG
Sbjct: 1673 LILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAHIMVCTDVAARG 1732
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI V+TVIN +P++ + Y+HRVGRTARAGK G S+S+ GE + K++K +IK +K
Sbjct: 1733 LDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKILKMIIKASKTSC 1792
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQV 337
K R + E+V ++ K+ E +V+KI+ E + L + QV
Sbjct: 1793 KTRTLA----------------TEVVTNFKTKLNEYESKVKKIIDMENEEAALAAIENQV 1836
Query: 338 SKAEKMLKEKKPLHENPPREWFQTKKER 365
+ A+ L E+ P N R WFQTK ER
Sbjct: 1837 NAAKNKL-EQGP---NEKRGWFQTKYER 1860
>gi|2245018|emb|CAB10438.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268413|emb|CAB78705.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 683
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 43/241 (17%)
Query: 159 IFVP-----TKREAHEMHILLGLLGIKAGELHGNLTQPSRLE----------SLRKFKDE 203
FVP TK+ AH + IL GL G+KA ELHGNLTQ RL+ SL F+ +
Sbjct: 410 FFVPSCASGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNLGTSALFSLELFRKQ 469
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
E D LIATDVAARGLDI GV+TVINY P ++ Y+HRVGRTARAG+ G +V+ + DR
Sbjct: 470 EVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDR 529
Query: 264 KLVKQVI-----------KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312
L+K + K + +K R+IP + + K+ ++
Sbjct: 530 SLLKVITFESTLFLCLKAKKVGSKLKSRVIPE----------------QSIVKWSQIIDE 573
Query: 313 IEGEVQKILTEEK-HDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTS 371
+E + +++ E+ H AE ML+ + ++ P R WF T+KE+ + +
Sbjct: 574 MEDQYSAVISAERFHSHSSKNYGIPGELAENMLEHRDEIYARPKRTWFMTEKEKKLVAQA 633
Query: 372 Q 372
+
Sbjct: 634 E 634
>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 355
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 91/121 (75%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R +R ALL AL RTFK+ +IF+ +K+ AH+M I+ LLG+K ELHG+L+Q
Sbjct: 221 RVRAGKDSERSALLVALCKRTFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQE 280
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++L+ F+D + D L+ATD+A+RGLDI+GV+T+INY MP L Y+HRVGRTARAGK
Sbjct: 281 QRLKALQLFRDGQVDFLMATDLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQ 340
Query: 252 G 252
G
Sbjct: 341 G 341
>gi|448091961|ref|XP_004197457.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|448096550|ref|XP_004198488.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359378879|emb|CCE85138.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
gi|359379910|emb|CCE84107.1| Piso0_004710 [Millerozyma farinosa CBS 7064]
Length = 719
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 149/239 (62%), Gaps = 15/239 (6%)
Query: 132 RIRKDTHLDRKALLAAL---VCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK HL + ALL L + + +D ++FV TK AH + +LLG+LG+K ELHG L
Sbjct: 431 RIRKRDHL-KPALLFELLNTIDSSNQDRIVVFVSTKGTAHRLRVLLGVLGLKVSELHGAL 489
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+++ FK+ + VLI TD+AARGLDI ++ VINY MP + E Y+HRVGRTARA
Sbjct: 490 TQEQRLKNVTDFKELKVSVLICTDLAARGLDIPKIEFVINYDMPKTHEIYLHRVGRTARA 549
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPP-PLAEIVDK 305
G+ G S+++ GE DR +VK +K+ +N ++ G + K S P E ++K
Sbjct: 550 GREGRSITLVGESSHDRSIVKDALKSVENEPQN-----GAKKGKIVSRNIDWPRVEDINK 604
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKE 364
++ E +Q+IL EEK + + +A+ ++SKA+ ++K +K + P R WF++ K+
Sbjct: 605 V---IDNKEDTIQEILEEEKEAKEMLQAEMELSKADNLIKHRKEIMARPKRTWFESSKD 660
>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
Length = 627
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 144/231 (62%), Gaps = 14/231 (6%)
Query: 135 KDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
KD L R A+L +++ R FK T+IF K EAH +HI+LGLLG+K+ ELHGNL Q RL
Sbjct: 394 KDESL-RTAMLLSIITRHFKTETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRL 452
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
+L +F +E D LIATDVAARGLDI+GV+TVIN MP YIHRVGRTARAG G +
Sbjct: 453 RALDRFSKKEVDFLIATDVAARGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRA 512
Query: 255 VSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
V+ E R L+K+++K A ++KT S +A K+ A++E ++
Sbjct: 513 VTFVEEDRRLLMKKLVKQA---------VEAKQQIKTRSVNKESVA----KFAAQLEDLK 559
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E+ +IL EEK ++ + +A + ++A+ ++K + R WFQ++KE+
Sbjct: 560 KEIDEILEEEKVEKEIERATMEATRADNLIKHGNEIKARKKRTWFQSEKEK 610
>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660268|sp|Q6CJV1.1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
Length = 748
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 146/247 (59%), Gaps = 17/247 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
RIRK HL + ALL L+ + T + ++FV K AH++ I+LGLLG++ GELHG+
Sbjct: 456 IRIRKRDHL-KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGS 514
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ RL+S+ FK + VLI TD+A+RGLDI ++ VIN+ MP + E Y+HRVGRTAR
Sbjct: 515 LTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR 574
Query: 248 AGKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK 305
AG+ G SV+ GE DR +V+ I++ + + G + + V++
Sbjct: 575 AGREGRSVTFVGESSQDRSIVRSAIRSVEENAES-----GKALSRNVDWTQ------VEQ 623
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+ + A V++I+ EEK ++ + +A+ ++ K E MLK K+ + P R WFQ++ E+
Sbjct: 624 VNSLIGAKGDVVEEIIEEEKQEKEILRAEMELRKGENMLKHKEEISARPRRTWFQSEAEK 683
Query: 366 AAIKTSQ 372
K Q
Sbjct: 684 KNSKMLQ 690
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 32/236 (13%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK L + ALL L+ + ++FV K AH + I+LGLLG+K ELHG LTQ
Sbjct: 353 RIRKRDQL-KPALLYQLL-KGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQE 410
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL++++ FK E VLI TD+AARGLDI ++ VINY MP + E Y+HRVGRTARAG+
Sbjct: 411 QRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRD 470
Query: 252 GVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S++ GE +R +VK I N K +A+ VD +A+
Sbjct: 471 GTSITFVGESSQERAIVKSAIVNGKG-----------------------VAKTVDWKQAE 507
Query: 310 -----VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQ 360
+E+ E + ++L EEK + L +A+ +++KA ++K ++ +H P R WF+
Sbjct: 508 ETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIKHEQEIHSRPKRTWFK 563
>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 570
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 19/225 (8%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L + KD T++F TKR AH M ++ LL +K GELHGNL+Q R ES+ +F
Sbjct: 320 REACALYLCTKYSKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRFESVERF 379
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ E D L+A+++A+RGLDI GVKTVIN +P + YIHRVGRTAR G G ++++ +
Sbjct: 380 KNGEIDYLLASELASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHGKAITLYVD 439
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
R VK +K + I + K + ++KY+ K++ +E +++++
Sbjct: 440 EQRSQVKLFLKKTSD------IGATLSKNK-----KKVTSATLNKYKTKIDELEEKIKEL 488
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
L EE ++ + D + +EK R+WF++KK++
Sbjct: 489 LLEENIEKDIKMCDATLKTHGDQDREK--------RKWFRSKKDK 525
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 140/233 (60%), Gaps = 23/233 (9%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK L K + L+ + + T++F TK EAH++ I+LGLLG+ ELHG LTQ
Sbjct: 421 RIRKREEL--KPAVLYLLLKKLEGRTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQE 478
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL +++ FK+ +VLI TD+AARGLDIR ++ VINY MP + E Y HRVGRTARAG+
Sbjct: 479 QRLANVKAFKN-NVNVLICTDLAARGLDIR-IEYVINYDMPKTYEIYTHRVGRTARAGRK 536
Query: 252 GVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S GE DR +VK I+ V +I + V+K + K
Sbjct: 537 GTSISFVGESMQDRNIVKNAIQFNSRSVARKID-----------------WDEVEKIQTK 579
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
++ EG +++++ EEK R + +A+ Q++KAE ++K +K + P R WF+++
Sbjct: 580 IKLNEGAIEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIKSRPKRTWFKSE 632
>gi|403223642|dbj|BAM41772.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 567
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 19/227 (8%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L + K+ T++F TKR AH M+++ L+ +K ELHGNL+Q R ES+ KF
Sbjct: 318 REACAVYLCTKYCKEKTILFFQTKRAAHRMYLIFKLMKLKCAELHGNLSQSKRFESVEKF 377
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E D L+A+++A+RGLDI G+KTVIN +P + YIHRVGRTAR G G ++++ +
Sbjct: 378 KKSEVDYLLASELASRGLDIPGIKTVINVDLPTDITRYIHRVGRTARMGSSGKAITLYVD 437
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
R VK +K K + Y K + I++KY+ + +E ++++I
Sbjct: 438 EQRSQVKLFLK------KTSTLGSKYENNK-----RKVASGILNKYKNSIAELEEKIKEI 486
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
L EK ++ + K D + E E R+WF++ KE+ +
Sbjct: 487 LLNEKIEKDIKKIDSTMKNVEG--------KETEKRKWFRSIKEKKS 525
>gi|226500380|ref|NP_001141931.1| uncharacterized protein LOC100274080 [Zea mays]
gi|194706482|gb|ACF87325.1| unknown [Zea mays]
gi|414589948|tpg|DAA40519.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 337
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 16/187 (8%)
Query: 179 IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHY 238
+KA ELHGNLTQ RLE+L FK +E D LIATDVAARG+DI GV+TVIN+ P ++ Y
Sbjct: 1 MKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTY 60
Query: 239 IHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPP 298
+HRVGRTARAG+ G +V+ + DR L+K + K A + +K RI+ P
Sbjct: 61 LHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLKSRIV------------AEKP 108
Query: 299 LAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREW 358
+AE +E +EG++ I+ EE+ +R KA+ +++KAE M+ K ++ P R W
Sbjct: 109 VAECA----RLIEQLEGQISIIIREERVEREARKAEMEIAKAENMIAHKDEIYSRPKRTW 164
Query: 359 FQTKKER 365
F T++E+
Sbjct: 165 FATEREK 171
>gi|124807064|ref|XP_001350899.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
gi|23497029|gb|AAN36579.1|AE014852_23 DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
gi|156072134|gb|ABU45418.1| DEAD-box helicase 15 [Plasmodium falciparum]
Length = 717
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 16/223 (7%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
RKA L L +K+H +IF TKRE H M++L LL ++ ELHG+++Q R+ES+ KF
Sbjct: 373 RKASLLYLCNNIYKNHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKF 432
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E D L+ T++A+RG+DI V VINY +P ++ Y+HR+GRTAR GK G++ ++ +
Sbjct: 433 KKAEVDFLLTTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQ 492
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAE--IVDKYRAKVEAIEGEVQ 318
++ VK+++K G + K +AE ++ Y+ ++ + ++
Sbjct: 493 KEKIEVKKIVK-------------GLKKSKNLKILKRTIAENNVLVWYKI-IKENKQKLN 538
Query: 319 KILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
I+ +EK D+ + +++ + K + M+ K + P R WF T
Sbjct: 539 DIIQQEKIDKEIEMSNKSIDKIKNMITFKDEIMSRPARTWFLT 581
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Query: 140 DRKALLAALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D++ +C+T + + ++F K+EAH + I+ GL+G+KA ELHG+++Q R++S+
Sbjct: 526 DKRLGYLMFLCKTVYSNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVE 585
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+D + L+ATD+A+RGLDI+GV+TVINY P S E Y+HRVGRTARAG+ G + ++A
Sbjct: 586 DFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIA 645
Query: 259 GEVDRKLVKQVIKNAK 274
E DRK+VK+ +K +
Sbjct: 646 AEPDRKVVKEAVKAGR 661
>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
Length = 564
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A L L+ FK+ T+IFV TK + H + I+LG L + + ELHGNL+Q
Sbjct: 337 LRIRSNQDSDREATLITLLKTKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQ 396
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R+++ FK+ + L+ATD+AARGLD+ VK VINY +P+ + YIHRVGRTAR G
Sbjct: 397 QQRIQAYEDFKEGKFQFLLATDLAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGA 456
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G+SV++ E + K++I+ +K + I R + R ++
Sbjct: 457 QGISVTICLENEVVKFKKMIRQSKQQLFKMIADTNKVR----------------QMRRQI 500
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAE 341
+ +E +++K++ EE + + K + K E
Sbjct: 501 QQLEPQIRKVIKEEVAEMEVRKTEMMTQKGE 531
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 130/241 (53%), Gaps = 6/241 (2%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLG-IKAGELHGNLTQP 191
IR + R+A L A + F +IF K+ AH M +LLGL+G +K ELHGNL+Q
Sbjct: 371 IRVTSEQQREATLLAACTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQ 430
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R+++L F+ + LI TD+AARGLD+ V+TVIN+ +P + Y+HRVGRTARAG
Sbjct: 431 QRVKALADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGAS 490
Query: 252 GVSVSMAGEVDRKLVKQVIKNAKNPVKH-RIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV 310
G SV+M + K VK + K VK + P P++ + +E V K+
Sbjct: 491 GTSVTMYTPGEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVD----SEDVKDMAVKI 546
Query: 311 EAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKT 370
E +V++I+ EE +R L AD K + M +K + P ++W + AI +
Sbjct: 547 TESEDKVKQIMQEESVERELRLADVMAKKVDNMKTHRKEIDRRPRQQWIRKGAGAEAIDS 606
Query: 371 S 371
+
Sbjct: 607 A 607
>gi|385303016|gb|EIF47118.1| nucleolar dead-box protein required for synthesis of 60s ribosomal
subunits [Dekkera bruxellensis AWRI1499]
Length = 410
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 18/230 (7%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDH---TMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
RIRK L + ALL ++ + ++ ++FV TK AH + I++GLLG+K ELHG L
Sbjct: 189 RIRKRDGL-KPALLYDVLAKLXSNNQSRIIVFVATKTLAHRLRIVMGLLGLKVXELHGAL 247
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
+Q RL+S+ FK +LI TD+A+RGLDI ++ VINY MP + E Y+HRVGRTARA
Sbjct: 248 SQEQRLDSITAFKKLTVPILICTDLASRGLDIPKIEVVINYDMPKNHEIYLHRVGRTARA 307
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G S+S GE +R +VK+ IK ++ + + AE V K
Sbjct: 308 GRXGKSISFVGESKRERHIVKESIKQIESSHTGKAVSRKV-----------DWAE-VSKI 355
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPR 356
+ +E + +V +L+EEK ++ L +A+ ++ K E MLK K + P R
Sbjct: 356 NSIIETKKDDVDDVLSEEKAEKELLQAEMELKKGENMLKYKDEIEARPKR 405
>gi|429329858|gb|AFZ81617.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 562
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 28/230 (12%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A + L K ++F TK+ AH M ++ LL + GELHG+L+Q R ES++KF
Sbjct: 313 REACVLYLCETQCKSKCILFFQTKKSAHRMALIFKLLNMSCGELHGDLSQLKRFESVQKF 372
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
++ E D L+A+++AARGLDI G+ TVIN +P + YIHRVGRTAR G G ++S+ E
Sbjct: 373 RNGEVDYLLASELAARGLDIPGIDTVINVHLPTDVVRYIHRVGRTARMGSHGKAISVYIE 432
Query: 261 VDRKLVKQVIKNAKNPVKH-----RIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
++ +K ++K N K+ R +P G ++ KY K+EA E
Sbjct: 433 EEKAKMKVLLKKTSNIDKNLGKYKRRVPLG----------------VLKKYSEKIEAFED 476
Query: 316 EVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
++ +IL E + ++++ + LK K + R+WF++ K++
Sbjct: 477 QINEILINE-------RIEKEIRLCDNSLKSAKDDNATGKRQWFRSLKDK 519
>gi|344229654|gb|EGV61539.1| hypothetical protein CANTEDRAFT_115012 [Candida tenuis ATCC 10573]
Length = 257
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 127/210 (60%), Gaps = 13/210 (6%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++FV K AH + I+LGLLG+K ELHG+LTQ RLE++ FK+ +LI TD+AARG
Sbjct: 5 VVFVARKETAHNLRIVLGLLGLKVSELHGSLTQEQRLENVSNFKNLVVPILICTDLAARG 64
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNAKN 275
LDI ++ VIN+ MP S E Y+HRVGRTARAG+ G+S++ GE DR +V KN
Sbjct: 65 LDIPKIELVINFDMPKSYEIYLHRVGRTARAGRDGISITFVGESSQDRSIV-------KN 117
Query: 276 PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
+K PG + + S + E+ +E+ E ++++ EEK + + +A+
Sbjct: 118 SIKAITENPGNGKAISRSADWKQVEEL----NKIIESKEDIIEEVKEEEKSAKEIIQAEM 173
Query: 336 QVSKAEKMLKEKKPLHENPPREWFQTKKER 365
+++KA +LK K + P R WFQ+ +E+
Sbjct: 174 ELNKASNILKHKSEIQSRPRRTWFQSSEEK 203
>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
Length = 1453
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 112/182 (61%), Gaps = 19/182 (10%)
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P + E F+D + + L+ATD+A+RGLDI+G+ TVINY P SLE Y+HRVGRTARAG+
Sbjct: 552 PWKHEPGSAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGR 611
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
GV++++A E DRK+VK ++ K + R+I A DK++
Sbjct: 612 SGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVID----------------AADADKWQ 655
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+++ ++ E+ +IL EEK ++ L + + QV K E ++K ++ +H P R WF+T++++
Sbjct: 656 DQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGENLIKHEEEIHARPKRTWFETQEDKKK 715
Query: 368 IK 369
K
Sbjct: 716 AK 717
>gi|401412566|ref|XP_003885730.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
gi|325120150|emb|CBZ55704.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
Length = 969
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 19/254 (7%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
+++D H R L L + + ++F TK+ AH+ +L +G++ ELHGNLTQ
Sbjct: 493 LQRDEH--RAPALLHLCTTAYTKNVIVFFQTKQLAHQTSLLFKFMGLQYAELHGNLTQQM 550
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R+E+L +F E D L+A+++A+RGLDI GV+ VIN+ +P ++ YIH VGRTAR G+ G
Sbjct: 551 RVEALERFHAGEADFLLASELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSG 610
Query: 253 VSVSM--AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPR--------LKTPSFPPPPL--- 299
V+V++ +R VK++++ + + PG R + S P
Sbjct: 611 VAVTLYHRDGPERLQVKKLLQALRGGLNQSGEKPGKSRNSKGKGDTAQDGSSAGAPRVFQ 670
Query: 300 ----AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPP 355
A+ ++ KV++++G++ + L EK +R + A+ + KAE + ++ P
Sbjct: 671 RRIDADKLEALEKKVKSLQGDISRELKREKLEREVRLAELHLQKAENLQTHADEIYSRPM 730
Query: 356 REWFQTKKERAAIK 369
R+WF T KE+ +K
Sbjct: 731 RQWFMTAKEKQRLK 744
>gi|403341274|gb|EJY69938.1| DEAD/DEAH box RNA helicase, putative [Oxytricha trifallax]
Length = 952
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 15/218 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L LV + FK +IF K + H M IL + G+ A E+HGNLTQ R++++ KF
Sbjct: 529 REATLINLVKKHFKQRVIIFFNEKAQCHRMMILFKIYGLDATEVHGNLTQEERMQNIEKF 588
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
++ + L+ATD+ ARGLD+ VKTVIN+ P + Y+HR+GRTARAG GV++++ +
Sbjct: 589 QNGHAEYLLATDLVARGLDLPMVKTVINFSFPTEPKRYLHRIGRTARAGSHGVAITICND 648
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
+RK +K++ + V T S + ++ K ++++ I V+++
Sbjct: 649 EERKEIKKLTRKLGQQV------------NTYSMNSQQVKKVFTKISSQLDQI---VKEV 693
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREW 358
EEK D + + + +AE M+K K + P W
Sbjct: 694 SMEEKQDNEIQQGFKDAKRAENMIKYKDEIMNRPRNVW 731
>gi|156096011|ref|XP_001614040.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148802914|gb|EDL44313.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 737
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 132/229 (57%), Gaps = 12/229 (5%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L L +K+H +IF TK+E H M+++ L K ELHG+LTQ R+ES+ KF
Sbjct: 366 RRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKF 425
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E D L+ T++A+RGLDI + VINY +P ++ Y+HR+GRTAR GK G + ++
Sbjct: 426 KKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKDGTASTLYRP 485
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
++ VK++IK K +I F ++ + + + + +++++
Sbjct: 486 NEKADVKKIIKGLKKSKNAKI------------FRRNISSDSISHWDDLLRKKKKKIKEM 533
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ EEK ++ ++KA + + K + +++ K + PPREWF T KE+ ++
Sbjct: 534 IKEEKENKEIDKATKSIEKIKNLIQFKDEIMSRPPREWFLTNKEKLRLR 582
>gi|142982571|sp|P0C2N7.1|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
Length = 795
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 112/182 (61%), Gaps = 19/182 (10%)
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
P + E F+D + + L+ATD+A+RGLDI+G+ TVINY P SLE Y+HRVGRTARAG+
Sbjct: 552 PWKHEPGSAFRDGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGR 611
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
GV++++A E DRK+VK ++ K + R+I A DK++
Sbjct: 612 SGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVID----------------AADADKWQ 655
Query: 308 AKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAA 367
+++ ++ E+ +IL EEK ++ L + + QV K E ++K ++ +H P R WF+T++++
Sbjct: 656 DQIDEMDDEIDEILQEEKEEKQLAQIEMQVKKGENLIKHEEEIHARPKRTWFETQEDKKK 715
Query: 368 IK 369
K
Sbjct: 716 AK 717
>gi|56971488|gb|AAH88338.1| Ddx27 protein, partial [Rattus norvegicus]
Length = 265
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 17/158 (10%)
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GVKTVIN+ MP++++HY+HRVGRTARAG+ G SVS+ GE +RK++K+++K AK P
Sbjct: 1 GLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAP 60
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
VK RI+P +++ K+R K+E +E +V +L E +R + +++ Q
Sbjct: 61 VKARILPQ----------------DVILKFRDKIEKMEKDVYAVLQLEAEEREVQQSEAQ 104
Query: 337 VSKAEKML-KEKKPLHENPPREWFQTKKERAAIKTSQA 373
+ A+++L K K+ + P R WFQTK+ER K ++A
Sbjct: 105 IDTAQRLLSKGKQTADQEPERSWFQTKEERKKEKIAKA 142
>gi|10732632|gb|AAG22482.1|AF193054_1 unknown [Homo sapiens]
Length = 312
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 77/94 (81%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
RIR + DR+A++AAL+ RTF DH M+F TK++AH MHILLGL+G++ GELHGNL+Q
Sbjct: 218 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQ 277
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVK 224
RLE+LR+FKDE+ D+L+ATDVAARGLDI G K
Sbjct: 278 TQRLEALRRFKDEQIDILVATDVAARGLDIEGSK 311
>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 515
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 112/211 (53%), Gaps = 10/211 (4%)
Query: 83 FVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLLCFRIRKD------ 136
F S IEE +K T S+ S + + L +P + F++ K
Sbjct: 180 FYSQIEEVHKSLPETTQSILVTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGLTQEFI 239
Query: 137 --THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
T R A L A R T+IF TK+ H +++L LG+ EL G++TQ R
Sbjct: 240 RCTKETRDATLVACCSRLCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRY 299
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
E+ F + + LIATDVAARGLDI+G++ VINY MP SL Y+HRVGRTAR G +
Sbjct: 300 EAHSLFAGGQAEFLIATDVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRT 359
Query: 255 VSMAGEVDRKLVKQVIKNA--KNPVKHRIIP 283
+++ E DR+++K +I+ + NPV R IP
Sbjct: 360 IALITEDDREMMKSIIEKSAESNPVSKRTIP 390
>gi|389586602|dbj|GAB69331.1| DEAD/DEAH box helicase, partial [Plasmodium cynomolgi strain B]
Length = 633
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L L +K+H +IF TK+E H M+++ L K ELHG+LTQ R+ES+ KF
Sbjct: 235 RRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKF 294
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E D L+ T++A+RGLDI + VINY +P ++ Y+HR+GRTAR GK G + ++
Sbjct: 295 KKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKEGTASTLYRP 354
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKI 320
++ VK++IK K +I F + + + + + E++++
Sbjct: 355 NEKADVKKIIKGLKKSKNAKI------------FRRNISNDSISHWDNLLRKKKKEIKEM 402
Query: 321 LTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+ EEK ++ ++KA + + K + +++ K + PPREWF T KE+ ++
Sbjct: 403 IKEEKENKEIDKATKSIEKIKNLIQFKDEIMSRPPREWFLTNKEKVHLR 451
>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571, partial [Aureococcus
anophagefferens]
Length = 545
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 24/246 (9%)
Query: 140 DRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAG----------ELHGN 187
+R+A L AL+ RT ++F TK + LL L + G ELHG
Sbjct: 304 EREATLLALLTRTVDPASQAVVFFDTKAATRRVGALLEALRARGGLSGHALPPATELHGG 363
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
L Q R +L +F+ + +L+ TDVAARGLD+ GV V+N+ MP ++ Y+HRVGRTAR
Sbjct: 364 LRQAQRDANLARFERGDAGILLCTDVAARGLDLAGVGAVVNFEMPRTVATYVHRVGRTAR 423
Query: 248 AGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGY--------PRLKTPSFPPPPL 299
AG+ G +V++ G R+ +K+ +++ + L++ + PP L
Sbjct: 424 AGRSGHAVTLVGPQRRQALKEFLRSRTAQLDAARDAGDAGAAAELESAGLRSRAVPPAVL 483
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
AE +R V A E +V +L DR L++A E +AE +L + P REWF
Sbjct: 484 AE----WRDAVGAAEADVAGLLALAAADRELSRAAEDAQRAENLLVHGADIAARPKREWF 539
Query: 360 QTKKER 365
Q+ K++
Sbjct: 540 QSSKQK 545
>gi|225677534|gb|EEH15818.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
Pb03]
Length = 815
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 136/248 (54%), Gaps = 38/248 (15%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
R+R R L L +KD +IF K+EAH + I+ GL G+KA ELHG+++Q
Sbjct: 523 RLRPGREDKRLGYLITLCKTVYKDLVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQ- 581
Query: 192 SRLESLRKFKDEETDVLIA-----TDVAAR--GLDIRGVKTVINYRMPHSLEHYIHRVGR 244
E+ IA TD+ GLDI+GV+TVINY P S E Y+HRVGR
Sbjct: 582 -----------EQASFAIASGTLTTDLGHELIGLDIKGVETVINYEAPQSHEIYLHRVGR 630
Query: 245 TARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAE 301
TARAG+ G + ++A E DRK+VK +K + + R+I +AE
Sbjct: 631 TARAGRSGRACTIAAESDRKVVKAAVKTGRAQGAKIVSRLI---------------DVAE 675
Query: 302 IVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
DK+ AKVE +E EV++IL EEK ++ L +A+ +V++ ++ +K + P R WF++
Sbjct: 676 -ADKWAAKVEEMEDEVKEILKEEKEEKQLAQAEMEVTRGSNLISHEKEIMSRPKRTWFES 734
Query: 362 KKERAAIK 369
+KE+ K
Sbjct: 735 EKEKLQAK 742
>gi|221062043|ref|XP_002262591.1| DEAD/DEAH box helicase (fragment) [Plasmodium knowlesi strain H]
gi|193811741|emb|CAQ42469.1| DEAD/DEAH box helicase, putative (fragment) [Plasmodium knowlesi
strain H]
Length = 555
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 89/142 (62%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R+A L L +K+H +IF TK+E H M+++ L K ELHG+LTQ R+ES+ KF
Sbjct: 401 RRAALLHLCSNVYKNHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKF 460
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E D L+ T++A+RGLDI + VINY +P ++ Y+HR+GRTAR GK G S ++
Sbjct: 461 KKNEVDFLLCTELASRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKDGTSSTLYRP 520
Query: 261 VDRKLVKQVIKNAKNPVKHRII 282
++ VK++IK K +I
Sbjct: 521 NEKTDVKKIIKGLKKSKNAKIF 542
>gi|313231895|emb|CBY09007.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 98/135 (72%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIR DR+A++AAL+ R+F T++F T++ AH MHILLGLLG+K ELHG+++Q
Sbjct: 37 RIRPGREGDREAMVAALLTRSFPRFTLLFTQTRKMAHRMHILLGLLGLKVVELHGSMSQT 96
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RLE+L FK+ +++ TDVAARGLDI V+TVIN +P++ + Y+HRVGRTARAGK
Sbjct: 97 ARLEALANFKNGTAHIMVCTDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQ 156
Query: 252 GVSVSMAGEVDRKLV 266
G S+S+ RK +
Sbjct: 157 GRSISLGLSRPRKYI 171
>gi|209882552|ref|XP_002142712.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558318|gb|EEA08363.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 555
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
DR+ L ++ + + + ++F TK+EA + IL +LG A ELHG LTQ R E+L +
Sbjct: 262 DREGALFHILSKIYTERVIVFFQTKKEARRISILCNILGFSAVELHGYLTQEKRNENLAR 321
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F E+ +L+A+++AARGLDI+G+ VIN+ +P YIHRVGRTAR G+ G S+++
Sbjct: 322 FTKGESKILLASELAARGLDIKGITAVINFTLPLEASRYIHRVGRTARIGENGNSITLYS 381
Query: 260 EVDR----KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-EAIE 314
+ +R L+KQV++ + + + +LK S +E + + KV + I
Sbjct: 382 QSERSRLKSLMKQVLRKSGSSSSTTKLCNLMKKLKFSSNNISYWSERILESEPKVKQQIR 441
Query: 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQT 361
+ EK RL A+ + +KAE +L K+ + P ++WFQ+
Sbjct: 442 ANIA-----EKELRL---AELEANKAENILIHKENISGRPRKKWFQS 480
>gi|237842773|ref|XP_002370684.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968348|gb|EEB03544.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
Length = 962
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 15/244 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R L L + + ++F TK+ AH+ +L +G+K ELHGNLTQ R+E+L +F
Sbjct: 492 RAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERF 551
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM--A 258
E D L+A+++A+RGLDI GV+ VIN+ +P ++ YIH VGRTAR G+ GV+V++
Sbjct: 552 HAGEADFLLASELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIYHR 611
Query: 259 GEVDRKLVKQVIKNAKNPVKH------RIIPPGYPRLKTPSFPPPPL-------AEIVDK 305
+R VK+++ ++ + + + + S P A+ ++
Sbjct: 612 DGTERLQVKKLLHALRSGLNQPGEKAGKGKKGKGDKAQDGSLASGPRVFQRRIDADKLEM 671
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
KV++++G++ + L EK +R + A+ + KAE + ++ P R+WF T KE+
Sbjct: 672 LEKKVKSLQGDIVRELKREKLEREVRLAELHLQKAENLQTHADEIYSRPMRQWFMTAKEK 731
Query: 366 AAIK 369
+K
Sbjct: 732 QRLK 735
>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
Length = 959
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 15/244 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R L L + + ++F TK+ AH+ +L +G+K ELHGNLTQ R+E+L +F
Sbjct: 489 RAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERF 548
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM--A 258
E D L+A+++A+RGLDI GV+ VIN+ +P ++ YIH VGRTAR G+ GV+V++
Sbjct: 549 HAGEADFLLASELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIYHR 608
Query: 259 GEVDRKLVKQVIKNAKNPVKH------RIIPPGYPRLKTPSFPPPPL-------AEIVDK 305
+R VK+++ ++ + + + + S P A+ ++
Sbjct: 609 DGTERLQVKKLLHALRSGLNQPGEKAVKGKKGKGDKAQDGSLASGPRVFQRRIDADKLEM 668
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
KV++++G++ + L EK +R + A+ + KAE + ++ P R+WF T KE+
Sbjct: 669 LEKKVKSLQGDIVRELKREKLEREVRLAELHLQKAENLQTHADEIYSRPMRQWFMTAKEK 728
Query: 366 AAIK 369
+K
Sbjct: 729 QRLK 732
>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
Length = 962
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 15/244 (6%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R L L + + ++F TK+ AH+ +L +G+K ELHGNLTQ R+E+L +F
Sbjct: 492 RAPALLHLCTTAYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERF 551
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM--A 258
E D L+A+++A+RGLDI GV+ VIN+ +P ++ YIH VGRTAR G+ GV+V++
Sbjct: 552 HAGEADFLLASELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIYHR 611
Query: 259 GEVDRKLVKQVIKNAKNPVKH------RIIPPGYPRLKTPSFPPPPL-------AEIVDK 305
+R VK+++ ++ + + + + S P A+ ++
Sbjct: 612 DGTERLQVKKLLHALRSGLNQPGEKAVKGKKGKGDKAQDGSLASGPRVFQRRIDADKLEM 671
Query: 306 YRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
KV++++G++ + L EK +R + A+ + KAE + ++ P R+WF T KE+
Sbjct: 672 LEKKVKSLQGDIVRELKREKLEREVRLAELHLQKAENLQTHADEIYSRPMRQWFMTAKEK 731
Query: 366 AAIK 369
+K
Sbjct: 732 QRLK 735
>gi|70937865|ref|XP_739683.1| DEAD/DEAH box helicase [Plasmodium chabaudi chabaudi]
gi|56516861|emb|CAH80123.1| DEAD/DEAH box helicase, putative [Plasmodium chabaudi chabaudi]
Length = 451
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
RKA L L +K+H +IF T++E H M+ILL LL K ELHG ++Q R+ES+ KF
Sbjct: 298 RKATLLHLCNEVYKNHCIIFFKTRKETHLMYILLKLLDFKCEELHGLMSQKKRIESILKF 357
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
K++E D L+ T++A+RG+DI VK V+NY +P S+ Y+HR+GRTAR GK G + +
Sbjct: 358 KNQEVDFLLCTELASRGIDIDHVKYVVNYSLPASVVKYVHRIGRTARIGKKGTACTF 414
>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
Length = 649
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 127/246 (51%), Gaps = 27/246 (10%)
Query: 124 VLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
V L C I+ + R+A L + + T++F TKR AH ++ L G+K+GE
Sbjct: 351 VAKTLKCENIQLKSDDLREAAALYLCSQRYTKKTILFFQTKRAAHRNALVFQLAGLKSGE 410
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
LHG+L Q R E + KFK+ E D L+A+++A+RGLDI G+ VIN +P ++HRVG
Sbjct: 411 LHGDLAQAKRFEQIEKFKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVG 470
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKN----AKNPVKHRIIPPGYPRLKTPSFPPPPL 299
RTAR G+ G +++ E +R +K ++K+ N K +I G
Sbjct: 471 RTARMGEEGTAITFYTEKERSAIKSMMKSITDKGSNIDKQKIKLSGAA------------ 518
Query: 300 AEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWF 359
+ Y++K+E +E ++ ++L EK ++ L + + + E R WF
Sbjct: 519 ---LKNYKSKIEEMEPKIAELLAAEKVEKELRQCENAIKYGSST--------EKRERIWF 567
Query: 360 QTKKER 365
++KK++
Sbjct: 568 RSKKQK 573
>gi|71657084|ref|XP_817062.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70882231|gb|EAN95211.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 761
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 13/224 (5%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L AL F++ T++F + AH +H+L LG + EL GN Q R SL+KF
Sbjct: 422 FLVALCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQLQEERFASLKKFASG 481
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-D 262
E L +TDVA+RGLDI+GV TV+N+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 482 EVQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRD 541
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
++++++ + H++ +K P L+E K A + G++
Sbjct: 542 ADIMRKILTVSGVVNSHQV-----SSVKRRDVPDELLSEATKKVNAVFPQVRGQLAAEAL 596
Query: 323 EEKHDRLLNKADEQVSK-AEKMLKEKKPLHENPPREWFQTKKER 365
EEK + +A+ + S+ AE+ML + + P + W ++ ER
Sbjct: 597 EEK----IAQAERRYSRSAEEMLAD--GVTAQPKKTWCLSRAER 634
>gi|82794666|ref|XP_728531.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23484925|gb|EAA20096.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 487
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 80/117 (68%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
RKA L L +K + +IF T++E H M+ILL LL K ELHG LTQ R+ES+ KF
Sbjct: 303 RKATLLHLCNEVYKKNCIIFFKTRKETHLMYILLKLLNFKCEELHGLLTQKKRVESILKF 362
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
K+++ D L+ T++A+RG+DI +K VINY +P ++ Y+HR+GRTAR GK G S +
Sbjct: 363 KNQQVDFLLCTELASRGIDIDHIKYVINYSLPANVVKYVHRIGRTARIGKEGTSCTF 419
>gi|407420747|gb|EKF38661.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 712
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 13/224 (5%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L AL F++ T++F + AH +H+L LG + EL GN Q R SL++F
Sbjct: 373 FLVALCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQLQEERFASLKRFASG 432
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-D 262
E L +TDVA+RGLDI+GV TV+N+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 433 EVQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESKD 492
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
++++++ + H++ +K P L+E K A + G++
Sbjct: 493 ADIMRKILTVSGVVNSHQV-----SSVKRRDVPDELLSEATTKVNAVFPQVRGQLAAEAL 547
Query: 323 EEKHDRLLNKADEQVSK-AEKMLKEKKPLHENPPREWFQTKKER 365
EEK + +A+ + S+ AE+ML + + P + W ++ ER
Sbjct: 548 EEK----IAQAERRYSRSAEEMLAD--DVTAQPKKTWCLSRAER 585
>gi|406605499|emb|CCH43143.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 740
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 140/241 (58%), Gaps = 12/241 (4%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RIRK HL L L T +IFV K +AH++ I+LGLLG+K ELHG+LTQ
Sbjct: 455 RIRKRDHLKPSILFNILKKFTKDQRIVIFVARKEQAHKLRIILGLLGLKVSELHGSLTQE 514
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
RL+S+ FK +LI TD+A+RGLDI ++ V+N+ MP + E Y+HRVGRTAR G+
Sbjct: 515 QRLQSINNFKTLTVPILICTDLASRGLDIPKIEVVLNFDMPKNFEVYLHRVGRTARGGRE 574
Query: 252 GVSVSMAGE--VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
G S+S GE +DR +VK IK+++N + ++ + + V++
Sbjct: 575 GKSISFVGESSMDRSIVKDAIKSSQN-MNSKV---------NKTVGREVNWKEVEEINKI 624
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
+E+ +++IL EEK ++ + +A+ ++ K E +L+ K+ + P R WF+ + E+ K
Sbjct: 625 IESKNEILEEILVEEKTEKEMIQAEMELRKGENLLRYKEEIQSRPRRTWFEKESEKGVDK 684
Query: 370 T 370
Sbjct: 685 N 685
>gi|71424595|ref|XP_812847.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70877675|gb|EAN90996.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 761
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 13/224 (5%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L AL F++ T++F + AH +H+L LG + EL GN Q R SL+KF
Sbjct: 422 FLVALCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQPQEERFASLKKFASG 481
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-D 262
E L +TDVA+RGLDI+GV TV+N+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 482 EVQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESKD 541
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
+++++I + H++ +K P L+E K A + G++
Sbjct: 542 ADIMRKIITVSGVVNSHQV-----SSVKRRDVPDELLSEATRKVNAVFPQVRGQLVAEAL 596
Query: 323 EEKHDRLLNKADEQVSK-AEKMLKEKKPLHENPPREWFQTKKER 365
EEK + +A+ + S+ AE+M + + P + W ++ ER
Sbjct: 597 EEK----IAQAERRYSRSAEEMFAD--GVTAQPKKTWCLSRAER 634
>gi|407853529|gb|EKG06479.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 712
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 13/224 (5%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L AL F++ T++F + AH +H+L LG + EL GN Q R SL+KF
Sbjct: 373 FLVALCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQLQEERFASLKKFASG 432
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-D 262
E L +TDVA+RGLDI+GV TV+N+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 433 EVQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVEESKD 492
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
++++++ + H++ +K P L+E K A + G++
Sbjct: 493 ADIMRKILTVSGVVNSHQV-----SSVKRRDVPDELLSEATKKVNAVFPQVRGQLAAEAL 547
Query: 323 EEKHDRLLNKADEQVSK-AEKMLKEKKPLHENPPREWFQTKKER 365
EEK + +A+ + S+ AE+M + + P + W ++ ER
Sbjct: 548 EEK----IAQAERRYSRSAEEMFAD--GVTAQPKKTWCLSRAER 585
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T++F PTK AH + +L LGI + ELH +L+Q +R E++ +F++ +
Sbjct: 241 LVALCRNMCKDKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESK 300
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM-AGEVDR 263
L+A+D+AARG+DI ++ VIN+ +P+ LE YIHR GRT RAGK G ++SM ++
Sbjct: 301 VQYLLASDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEK 360
Query: 264 KLVKQVIKNAKNPVKHRIIP 283
+++K++ KN+ V+ IP
Sbjct: 361 RVMKKMQKNSPGEVQFMTIP 380
>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
function [Komagataella pastoris GS115]
gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Komagataella pastoris CBS 7435]
Length = 761
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 135/236 (57%), Gaps = 19/236 (8%)
Query: 132 RIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
R+RK+ + + ALL ++ + + + ++F+ K +AH++ I+LGLLG+K ELHG+L
Sbjct: 471 RLRKNLEM-KPALLFDILTKVNPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSL 529
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ RL+S+ FK+ +LI TD+A+RGLDI ++ VINY MP + + Y+HRVGRTARA
Sbjct: 530 TQEQRLKSITDFKNLTVPILICTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARA 589
Query: 249 GKGGVSVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKY 306
G+ G S++ E DR +V++ +K G K + + ++K
Sbjct: 590 GREGRSITFVSESNQDRAIVREAMK-------------GIATAKNRALGRNVDWDSIEKI 636
Query: 307 RAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTK 362
+E + IL+EEK ++ +A+ +V K E +L + + P R WFQ++
Sbjct: 637 HQLIEEKAETIGDILSEEKEEKQFLRAEMEVRKGENILHHGEEIMSRPKRTWFQSE 692
>gi|67618387|ref|XP_667590.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis TU502]
gi|54658742|gb|EAL37362.1| DEAD/DEAH box RNA helicase [Cryptosporidium hominis]
Length = 543
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 10/221 (4%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ L ++ + F ++F TK+EAH IL + G+ + ELHG L Q RLE+ K
Sbjct: 261 EREGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSSTELHGFLPQEKRLENFSK 320
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + D+L A+++AARGLD++ V VIN+ +P YIHRVGRTAR G G +++
Sbjct: 321 FKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHRVGRTARIGSKGNCITIYT 380
Query: 260 EVDRK----LVKQVIKNA-KNPVKHRIIPPGYPR-LKTPSFPPPPLAEIVDKYRAKVEAI 313
+ +R L+KQV++ K+ V R +K + + + V+K + +
Sbjct: 381 QSERSQLKALMKQVLRAGNKSSVAGRDKKENVSSIMKKRTLATNNINQWVEKISNSEKQV 440
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENP 354
+ ++ +TE++ L A+ QV+KA+ +L KK + P
Sbjct: 441 KDAIKADITEKE----LRIAEMQVNKAQNILLHKKDIESRP 477
>gi|66475988|ref|XP_627810.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
gi|46229323|gb|EAK90172.1| Drs1p, eIF4a-1-family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
Length = 573
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ L ++ + F ++F TK+EAH IL + G+ + ELHG L Q RLE+ K
Sbjct: 291 EREGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSSTELHGFLPQEKRLENFSK 350
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + D+L A+++AARGLD++ V VIN+ +P YIHRVGRTAR G G +++
Sbjct: 351 FKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHRVGRTARIGSKGNCITIYT 410
Query: 260 EVDRK----LVKQVIKNA-KNPVKHRIIPPGYPR-LKTPSFPPPPLAEIVDKYRAKVEAI 313
+R L+KQV++ K+ V R +K + + + V+K + +
Sbjct: 411 RSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLATNNINQWVEKISNSEKQV 470
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENP 354
+ ++ +TE++ L A+ QV+KA+ +L KK + P
Sbjct: 471 KDAIKADITEKE----LRIAEMQVNKAQNILLHKKDIESRP 507
>gi|32399059|emb|CAD98299.1| DEAD/DEAH box RNA helicase, possible [Cryptosporidium parvum]
Length = 543
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ L ++ + F ++F TK+EAH IL + G+ + ELHG L Q RLE+ K
Sbjct: 261 EREGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSSTELHGFLPQEKRLENFSK 320
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + D+L A+++AARGLD++ V VIN+ +P YIHRVGRTAR G G +++
Sbjct: 321 FKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHRVGRTARIGSKGNCITIYT 380
Query: 260 EVDRK----LVKQVIKNA-KNPVKHRIIPPGYPR-LKTPSFPPPPLAEIVDKYRAKVEAI 313
+R L+KQV++ K+ V R +K + + + V+K + +
Sbjct: 381 RSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLATNNINQWVEKISNSEKQV 440
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENP 354
+ ++ +TE++ L A+ QV+KA+ +L KK + P
Sbjct: 441 KDAIKADITEKE----LRIAEMQVNKAQNILLHKKDIESRP 477
>gi|323509459|dbj|BAJ77622.1| cgd6_4830 [Cryptosporidium parvum]
Length = 532
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ L ++ + F ++F TK+EAH IL + G+ + ELHG L Q RLE+ K
Sbjct: 261 EREGALFYILNKIFTKRVIVFFQTKKEAHRCAILGNIFGLSSTELHGFLPQEKRLENFSK 320
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + D+L A+++AARGLD++ V VIN+ +P YIHRVGRTAR G G +++
Sbjct: 321 FKSGQVDILFASELAARGLDVQDVSAVINFTIPLEASRYIHRVGRTARIGSKGNCITIYT 380
Query: 260 EVDRK----LVKQVIKNA-KNPVKHRIIPPGYPR-LKTPSFPPPPLAEIVDKYRAKVEAI 313
+R L+KQV++ K+ V R +K + + + V+K + +
Sbjct: 381 RSERSQLKALMKQVLRAGNKSSVAGRDTKENVSSIMKKRTLATNNINQWVEKISNSEKQV 440
Query: 314 EGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENP 354
+ ++ +TE++ L A+ QV+KA+ +L KK + P
Sbjct: 441 KDAIKADITEKE----LRIAEMQVNKAQNILLHKKDIESRP 477
>gi|342180968|emb|CCC90445.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 760
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L +L F+D TMIF + H +H+L LG+ + EL GN TQ R SL+KF +
Sbjct: 421 LLSLCMNYFRDRTMIFARYRTTVHRLHLLFSALGLSSVELQGNQTQEERFTSLQKFVSGQ 480
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
L +TDVA+RGLDI+ V TVIN+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 481 VSYLFSTDVASRGLDIKDVTTVINFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRDA 540
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+++++++ + H+ ++ P L E K++A+ +V+ L
Sbjct: 541 EIMRKILAVSGVVSNHQAAT-----VRRRDVPEVALLEAAR----KIDAVFPQVRAELAA 591
Query: 324 EKHDRLLNKADEQVSK--AEKMLKEKKPLHENPPREW 358
E+ + KA+++ + EK+LKE P R W
Sbjct: 592 EELHASIEKAEKRYGREAGEKVLKETATAR--PRRAW 626
>gi|343476454|emb|CCD12453.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 760
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L +L F+D TMIF + H +H+L LG+ + EL GN TQ R SL+KF +
Sbjct: 421 LLSLCMNYFRDRTMIFARYRTTVHRLHLLFSALGLSSVELQGNQTQEERFTSLQKFVSGQ 480
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
L +TDVA+RGLDI+ V TVIN+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 481 VSYLFSTDVASRGLDIKDVTTVINFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRDA 540
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+++++++ + H+ ++ P L E K++A+ +V+ L
Sbjct: 541 EIMRKILAVSGVVSNHQAAT-----VRRRDVPEVALLEAAR----KIDAVFPQVRAELAA 591
Query: 324 EKHDRLLNKADEQVSK--AEKMLKEKKPLHENPPREW 358
E+ + KA+++ + EK+LKE P R W
Sbjct: 592 EELHASIEKAEKRYGREAGEKVLKETATAR--PRRAW 626
>gi|367028222|ref|XP_003663395.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
gi|347010664|gb|AEO58150.1| hypothetical protein MYCTH_2118610 [Myceliophthora thermophila ATCC
42464]
Length = 1400
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 34/232 (14%)
Query: 156 HTMIFVPTKREAHEMHILLGL------LGIKAGELHGNLTQ------PSRLE---SLRKF 200
TM+F T + I +GL + + G LTQ P R E + F
Sbjct: 465 QTMLFSATMTSTVDKLIRVGLNKPARIMVDSQKQTAGTLTQEFVRLRPGREEKRMGVEAF 524
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+D + + L+ATD+A+RGLDI+G+ TVINY P SLE Y+HRVGRTARAG+ GV++++A E
Sbjct: 525 RDGKVNFLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVALTLAAE 584
Query: 261 VDRKLVKQVIKNAKNP---VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEV 317
DRK+VK +K K + R+I P DK++A+V+ ++ E+
Sbjct: 585 PDRKVVKAAVKAGKAQGAKIISRVIDPAE----------------ADKWQAQVDEMDEEI 628
Query: 318 QKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++IL EEK ++ L + + QV K E ++K ++ +H P R WF++++ + K
Sbjct: 629 EEILREEKEEKQLAQMEMQVKKGENLIKYEEEIHSRPKRTWFESQEAKKKAK 680
>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|418618997|ref|ZP_13181840.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
hominis subsp. hominis C80]
gi|374825858|gb|EHR89777.1| DEAD/DEAH box helicase [Staphylococcus hominis VCU122]
Length = 503
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EEV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
R R+K + PP E++ +A+ E I+ +V+ ++ E DRL
Sbjct: 359 NDR-------RMK--ALRPPHRKEVL---KAREEDIKDKVKNWMSRESEDRL 398
>gi|358377688|gb|EHK15371.1| hypothetical protein TRIVIDRAFT_196232 [Trichoderma virens Gv29-8]
Length = 1380
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 113/185 (61%), Gaps = 21/185 (11%)
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R+ S+ F+D + L+ATD+A+RGLDI+GV TVINY P S+E Y+HRVGRTARAG+ G
Sbjct: 480 RIASVESFRDGKVCYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRHG 539
Query: 253 VSVSMAGEVDRKLVKQVIKNAK---NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAK 309
SV++A E DRK+VK +K K + + R+I + DK++A+
Sbjct: 540 TSVTLAAEPDRKVVKAAVKAGKAQGSKIISRVIE----------------VKDADKWQAE 583
Query: 310 VEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIK 369
++ ++ E+ +I EEK +R L + + Q+ K E +++ + + P R WF+T++++ K
Sbjct: 584 IDEMDDEIAEIEKEEKEERQLAQVEMQIKKGENIIEHEAEIKSRPKRTWFETQQDKKNAK 643
Query: 370 TSQAG 374
QAG
Sbjct: 644 --QAG 646
>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|387868591|ref|YP_005700060.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
Length = 448
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 10/225 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F S IE + +T T +S+A LL PV + +
Sbjct: 164 DMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFADRLLNDPVDVSAEPPRRERKKIQ 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D+ + ALL +L+ + ++IFV + HE+ L GI+A L G +
Sbjct: 224 QWYYRADSLKHKTALLCSLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
+ G ++S+ D+ L+ +V + + P+K R++ P K PS
Sbjct: 344 RKGTAISLIEAHDQLLLGKVSRYVQEPLKSRVVDELRPETKAPSL 388
>gi|414161639|ref|ZP_11417894.1| hypothetical protein HMPREF9310_02268 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875449|gb|EKS23368.1| hypothetical protein HMPREF9310_02268 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 502
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 17/174 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++ N
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQ-IEDTNN-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLN 331
R+K + PP E++ RA+ I+ +V+K + +E +RL N
Sbjct: 361 ---------RRMK--ALRPPHRKEVL---RARENDIKEKVEKWMNQEHSERLQN 400
>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
Length = 448
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F S IE + +T T +S+A LL PV + +
Sbjct: 164 DMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQ 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D+ + ALL L+ + ++IFV + HE+ L GI+A L G +
Sbjct: 224 QWYYRADSLKHKTALLCNLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
+ G ++S+ D+ L+ +V + + P+K R++ P K PS
Sbjct: 344 RKGTAISLIEAHDQLLLGKVSRYVQEPLKSRVVDNLRPETKAPSL 388
>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
Length = 518
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R L L+ ++IF+ TK+EA E++ L G K+ LHG++ Q R +S++
Sbjct: 243 ERNEALTRLIDTESPSKSIIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQA 302
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +E D+L+ATDVAARGLDIR V V NY +P ++E Y+HR+GRT RAG GV++++A
Sbjct: 303 FKGKEADILVATDVAARGLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLAT 362
Query: 260 EVDRKLVKQVIKNAKN 275
++ K +K+ I+N N
Sbjct: 363 PLEYKDLKK-IQNETN 377
>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 498
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G +A LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P +E Y HR+GRT RAGK G+++S V+ ++Q I+ AKN
Sbjct: 304 LDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQ-IEKAKNRQ 362
Query: 278 KHRIIPP 284
+ PP
Sbjct: 363 MQALRPP 369
>gi|404416449|ref|ZP_10998270.1| ATP-dependent RNA helicase [Staphylococcus arlettae CVD059]
gi|403491184|gb|EJY96708.1| ATP-dependent RNA helicase [Staphylococcus arlettae CVD059]
Length = 503
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I+ A N
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEQANNRQ 362
Query: 278 KHRIIPP 284
+ + PP
Sbjct: 363 MNALRPP 369
>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123643052|sp|Q49Z29.1|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 506
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 17/178 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK GV+++ ++ ++Q+ + K
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANKR-- 361
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
+ + PP E++ +A+ I+G+VQ ++ + RL A E
Sbjct: 362 ------------QMTALRPPHRKEVL---KARENDIKGKVQNWMSRDNEPRLQRIATE 404
>gi|420178510|ref|ZP_14684840.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM057]
gi|420181304|ref|ZP_14687507.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM053]
gi|420200772|ref|ZP_14706412.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM031]
gi|394246233|gb|EJD91494.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM057]
gi|394246652|gb|EJD91906.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM053]
gi|394267516|gb|EJE12103.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM031]
Length = 509
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENESRL 398
>gi|418575592|ref|ZP_13139742.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325994|gb|EHY93122.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 487
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 17/178 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 225 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARG 284
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK GV+++ ++ ++Q+ + K
Sbjct: 285 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANKR-- 342
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
+ + PP E++ +A+ I+G+VQ ++ + RL A E
Sbjct: 343 ------------QMTALRPPHRKEVL---KARENDIKGKVQNWMSRDNEPRLQRIATE 385
>gi|4027990|gb|AAC96099.1| putative RNA-helicase [Trypanosoma cruzi]
Length = 688
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 14/224 (6%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L AL F++ T++F + AH +H+L LG + EL GN Q R S R E
Sbjct: 420 FLVALCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQLQEERFASQRSCIGE 479
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-D 262
L +TDVA+RGLDI+GV TV+N+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 480 -VQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRD 538
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILT 322
++++++ + H++ +K P L+E K A + G++
Sbjct: 539 ADIMRKILTVSGVVNSHQV-----SSVKRRDVPDELLSEATKKVNAVFPQVRGQLAAEAL 593
Query: 323 EEKHDRLLNKADEQVSK-AEKMLKEKKPLHENPPREWFQTKKER 365
EEK + +A+ + S+ AE+ML + + P + W ++ ER
Sbjct: 594 EEK----IAQAERRYSRSAEEMLAD--GVTAQPKKTWCLSRAER 631
>gi|420186291|ref|ZP_14692362.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM040]
gi|394252508|gb|EJD97540.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM040]
Length = 509
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENESRL 398
>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 507
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ + +
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQIEQTNDRRM 363
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+ + PP E++ RA+ I+ +V+K +++E +RL
Sbjct: 364 R--------------ALRPPHRKEVL---RARENDIKEKVEKWMSQEHSERL 398
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 81/132 (61%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H+ + L L+ T+IF T E + ILL LG A LHG L+Q SRL +L
Sbjct: 284 HVRKDVYLIYLINEHVGKSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGAL 343
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ D+L+ATDVAARGLDI V V+NY +P + YIHRVGRTARAGK G+++S+
Sbjct: 344 NKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISV 403
Query: 258 AGEVDRKLVKQV 269
+ D ++ ++
Sbjct: 404 VTQYDVEIFTRI 415
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 128 LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
L+ ++RKDT+L LV T+IF T E + ILL LG A LHG
Sbjct: 277 LVIPQMRKDTYL------IYLVNEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQ 330
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
L+Q +RL +L KF+ D+L+ATDVAARGLDI V V+NY +P + YIHRVGRTAR
Sbjct: 331 LSQSARLGALNKFRSGTRDILVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTAR 390
Query: 248 AGKGGVSVSMAGEVDRKLVKQV 269
AGK G+++S+ + D ++ +++
Sbjct: 391 AGKSGIAISLVTQYDIEVFQRI 412
>gi|392970003|ref|ZP_10335412.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|403046049|ref|ZP_10901524.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
gi|392511931|emb|CCI58617.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|402764211|gb|EJX18298.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
Length = 507
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 17/178 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI V V N+ +P E Y HR+GRT RAGK GV+++ ++ ++Q+ + K
Sbjct: 304 LDISNVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANKR-- 361
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
+ + PP E++ +A+ I+G+V+K ++ E RL A E
Sbjct: 362 ------------QMTAMRPPHRKEVL---KARENDIKGKVEKWMSRENEPRLQRIASE 404
>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451965942|ref|ZP_21919197.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451315191|dbj|GAC64559.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
Length = 448
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLLC----------LLCFR 132
+ KD E V A W K T +A++ S LL PV + + +
Sbjct: 167 FAKDIETVAAETRWRKQTLLFSATLESDAVHDFADRLLEDPVDVSAEPPRRERKKIQQWY 226
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
R D+ + ALL L+ + ++IFV + HE+ L GI+A L G L Q
Sbjct: 227 YRADSLKHKTALLCHLLRQPDVTKSVIFVRKRERVHELVTWLHQAGIQACFLEGELVQAK 286
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R E++++ D +VL+ATDVAARGLDI + V N+ MP S + Y+HR+GRTARAG+ G
Sbjct: 287 RNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKG 346
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
++S+ D+ L+ +V + + P+K R++ P K PS
Sbjct: 347 TAISLIEAHDQLLLGKVSRYVQEPMKSRVVDELRPETKAPSL 388
>gi|418633569|ref|ZP_13195977.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU129]
gi|420190985|ref|ZP_14696922.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM037]
gi|420204908|ref|ZP_14710446.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM015]
gi|374838907|gb|EHS02440.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU129]
gi|394258083|gb|EJE02975.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM037]
gi|394271629|gb|EJE16118.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM015]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|418327507|ref|ZP_12938660.1| DEAD/DEAH box helicase [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614642|ref|ZP_13177605.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU118]
gi|418632462|ref|ZP_13194893.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU128]
gi|365232865|gb|EHM73840.1| DEAD/DEAH box helicase [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819532|gb|EHR83654.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU118]
gi|374832369|gb|EHR96084.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU128]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
RP62A]
gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646901|ref|ZP_12296753.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU144]
gi|417660218|ref|ZP_12309807.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU045]
gi|417908989|ref|ZP_12552739.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU037]
gi|417912456|ref|ZP_12556148.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU105]
gi|418613191|ref|ZP_13176207.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU117]
gi|418617909|ref|ZP_13180795.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU120]
gi|418622358|ref|ZP_13185110.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU123]
gi|418627678|ref|ZP_13190250.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU126]
gi|418629929|ref|ZP_13192422.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU127]
gi|420164449|ref|ZP_14671178.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM095]
gi|420166528|ref|ZP_14673212.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM088]
gi|420169264|ref|ZP_14675867.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM087]
gi|420171687|ref|ZP_14678222.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM070]
gi|420173608|ref|ZP_14680099.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM067]
gi|420186914|ref|ZP_14692938.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM039]
gi|420195899|ref|ZP_14701683.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM021]
gi|420207903|ref|ZP_14713388.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM008]
gi|420210262|ref|ZP_14715691.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM003]
gi|420212518|ref|ZP_14717867.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM001]
gi|420215194|ref|ZP_14720465.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05005]
gi|420216699|ref|ZP_14721897.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05001]
gi|420223686|ref|ZP_14728581.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH08001]
gi|420226143|ref|ZP_14730965.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH06004]
gi|420230941|ref|ZP_14735618.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04003]
gi|420235977|ref|ZP_14740508.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051475]
gi|81673916|sp|Q5HME0.1|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
epidermidis RP62A]
gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU144]
gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU045]
gi|341650668|gb|EGS74484.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU105]
gi|341654629|gb|EGS78368.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU037]
gi|374816627|gb|EHR80828.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU117]
gi|374817170|gb|EHR81356.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU120]
gi|374826952|gb|EHR90827.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU123]
gi|374829124|gb|EHR92938.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU126]
gi|374832448|gb|EHR96158.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU127]
gi|394231554|gb|EJD77180.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM095]
gi|394231727|gb|EJD77351.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM087]
gi|394233535|gb|EJD79136.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM088]
gi|394236802|gb|EJD82305.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM070]
gi|394239645|gb|EJD85080.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM067]
gi|394256880|gb|EJE01804.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM039]
gi|394262500|gb|EJE07262.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM021]
gi|394274923|gb|EJE19318.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM008]
gi|394276496|gb|EJE20834.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM003]
gi|394279639|gb|EJE23942.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM001]
gi|394282474|gb|EJE26667.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05005]
gi|394287184|gb|EJE31151.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH08001]
gi|394291378|gb|EJE35190.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05001]
gi|394292629|gb|EJE36369.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH06004]
gi|394295824|gb|EJE39460.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04003]
gi|394301613|gb|EJE45068.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051475]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|420174249|ref|ZP_14680702.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM061]
gi|420193514|ref|ZP_14699365.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM023]
gi|394245183|gb|EJD90500.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM061]
gi|394259781|gb|EJE04612.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM023]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|418326967|ref|ZP_12938142.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU071]
gi|365224073|gb|EHM65343.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU071]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|418609346|ref|ZP_13172499.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU065]
gi|374407748|gb|EHQ78596.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU065]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
epidermidis SK135]
gi|417656935|ref|ZP_12306613.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU028]
gi|417913851|ref|ZP_12557512.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU109]
gi|418413340|ref|ZP_12986582.1| hypothetical protein HMPREF9281_02186 [Staphylococcus epidermidis
BVS058A4]
gi|418604120|ref|ZP_13167487.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU041]
gi|418624602|ref|ZP_13187275.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU125]
gi|418663726|ref|ZP_13225235.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU081]
gi|419768504|ref|ZP_14294626.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-250]
gi|419771588|ref|ZP_14297639.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-K]
gi|420182053|ref|ZP_14688195.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM049]
gi|420202795|ref|ZP_14708383.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM018]
gi|420220941|ref|ZP_14725896.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04008]
gi|420233548|ref|ZP_14738156.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051668]
gi|421608789|ref|ZP_16050002.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
AU12-03]
gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
epidermidis SK135]
gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU028]
gi|341654309|gb|EGS78056.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU109]
gi|374405916|gb|EHQ76827.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU041]
gi|374411264|gb|EHQ81981.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU081]
gi|374827164|gb|EHR91030.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU125]
gi|383359868|gb|EID37278.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-250]
gi|383361086|gb|EID38468.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-K]
gi|394250517|gb|EJD95699.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM049]
gi|394268974|gb|EJE13519.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM018]
gi|394285391|gb|EJE29470.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH04008]
gi|394299830|gb|EJE43358.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH051668]
gi|406655530|gb|EKC81956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
AU12-03]
gi|410879227|gb|EKS27078.1| hypothetical protein HMPREF9281_02186 [Staphylococcus epidermidis
BVS058A4]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|418607526|ref|ZP_13170756.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU057]
gi|81843521|sp|Q8CRP6.1|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|374404380|gb|EHQ75354.1| DEAD/DEAH box helicase [Staphylococcus epidermidis VCU057]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
Length = 509
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A N
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANNRR 362
Query: 278 KHRIIPP 284
+ PP
Sbjct: 363 MTALRPP 369
>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
Length = 528
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 263 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 322
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 323 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 377
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 378 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 417
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 128 LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
+ C KDTHL LV + +IF TK + + +LL LG A LHG+
Sbjct: 283 VFCPFKHKDTHL------VYLVSENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGD 336
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
L+Q +RL +L KFK ++LIATDVA+RGLDI V VINY +P + YIHRVGRTAR
Sbjct: 337 LSQTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTAR 396
Query: 248 AGKGGVSVSMAGEVDRKL 265
AG+ G SV++ + D +L
Sbjct: 397 AGRAGKSVALVSQYDLEL 414
>gi|417644460|ref|ZP_12294450.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus warneri
VCU121]
gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis VCU121]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A N
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANNRR 362
Query: 278 KHRIIPP 284
+ PP
Sbjct: 363 MTALRPP 369
>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
Length = 528
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 263 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 322
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 323 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 377
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 378 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 417
>gi|445059172|ref|YP_007384576.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
gi|443425229|gb|AGC90132.1| DEAD-box ATP dependent DNA helicase [Staphylococcus warneri SG1]
Length = 509
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A N
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANNRR 362
Query: 278 KHRIIPP 284
+ PP
Sbjct: 363 MTALRPP 369
>gi|418322741|ref|ZP_12934053.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
pettenkoferi VCU012]
gi|365231063|gb|EHM72126.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
pettenkoferi VCU012]
Length = 496
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 17/175 (9%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVA
Sbjct: 241 DLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA 300
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ + +
Sbjct: 301 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEQTNE 360
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
++ + PP E++ RA+ + I+ +VQ + ++ RL
Sbjct: 361 RQMR--------------ALRPPHRKEVL---RAREKDIKDKVQNWMERDREPRL 398
>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
Length = 515
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 91/144 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ + L+ +IF K+EA + L G KAG LHG++ Q R++S++
Sbjct: 237 EREDAIVRLIDSEMPQKAIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKA 296
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD D+L+ATD+AARGLDI GV V N+ +P + E Y+HR+GRT RAGK GV++++A
Sbjct: 297 FKDSTIDILVATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLAT 356
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIP 283
++ K ++++ +N K ++ IP
Sbjct: 357 PLEFKELRRIKENTKASIELYEIP 380
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T E + +LL LG +A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 359 TILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAAR 418
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
GLDI V V+N+ +PH E Y+HRVGRTARAGK G +VS + D ++ +++
Sbjct: 419 GLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRI 471
>gi|449134958|ref|ZP_21770422.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
gi|448886437|gb|EMB16844.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
Length = 489
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
+CF D+ LL+ V T++F TK A + L G+KA +HGN
Sbjct: 239 ICFV----AQADKPRLLSHFVETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNK 294
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ +R+ +L KFK++E DVL+ATDVAARG+DI G++TVINY P++ E Y+HR+GRT RA
Sbjct: 295 TQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRA 354
Query: 249 GKGGVSVSMAG 259
G+ G +V G
Sbjct: 355 GREGETVMFCG 365
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 92/166 (55%), Gaps = 18/166 (10%)
Query: 98 VAYCWSKGTFQSNASM-TSFLFLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDH 156
V S +Q+ +++ ++LF+ P +KD HL L+
Sbjct: 260 VKVSISSNKYQTVSTLLQNYLFIPHP-----------QKDVHL------IYLINEHAGQS 302
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T E + ILL LG A LHG L+Q SRL +L KF+ D+L+ATDVAAR
Sbjct: 303 TIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAAR 362
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V V+NY +P + YIHRVGRTARAGK GV++S+ + D
Sbjct: 363 GLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYD 408
>gi|416128218|ref|ZP_11597223.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
FRI909]
gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
FRI909]
Length = 509
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKERVQNWMSRENEPRL 398
>gi|420198021|ref|ZP_14703739.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM020]
gi|420228554|ref|ZP_14733304.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05003]
gi|394264952|gb|EJE09618.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIHLM020]
gi|394294660|gb|EJE38328.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
epidermidis NIH05003]
Length = 509
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+ + D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNNQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 358
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+R R+K + PP E++ +A+ + I+ VQ ++ E RL
Sbjct: 359 NNR-------RMK--ALRPPHRKEVL---KAREDDIKDRVQNWMSRENEPRL 398
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RKDT+L LV T++F T E + ILL LG A LHG L+Q +R
Sbjct: 283 RKDTYL------IYLVNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSAR 336
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KF+ D+L+ATDVAARGLDI V V+NY +P + YIHRVGRTARAGK G+
Sbjct: 337 LGALNKFRSGTRDILVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGI 396
Query: 254 SVSMAGEVDRKLVKQV 269
++S+ + D ++ +++
Sbjct: 397 AISLVTQYDIEIFQRI 412
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + + +N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHTI----ENL 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
K R+ P PP E ++ ++ A E++ + E DR L+ AD+
Sbjct: 358 TKKRMTP----------LRPPTEKE---AFKGQLGAALEEIESKMDENGLDRYLSAADD 403
>gi|348618460|ref|ZP_08884985.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816260|emb|CCD29732.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 455
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR LL L+ T D ++F TK A E+ LL G + LHG+L Q +R +L
Sbjct: 268 HKDR--LLTHLLSDTLLDQAIVFTATKSGADELSSLLCSAGFISAALHGDLPQSARNRTL 325
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
R ++ VL+ATDVAARG+DI G+ V NY +P E Y+HR+GRT RAG+ G ++S
Sbjct: 326 RALRERRVLVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAISF 385
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPP 297
+R V+++ + + R+I PR +TPS P P
Sbjct: 386 VHHGERSTVRRIEHLTRQTLPVRVIEGFEPR-RTPSTPVP 424
>gi|319893030|ref|YP_004149905.1| cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
HKU10-03]
gi|386318744|ref|YP_006014907.1| DEAD-box ATP dependent RNA helicase [Staphylococcus
pseudintermedius ED99]
gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
HKU10-03]
gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
pseudintermedius ED99]
Length = 495
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ + + +
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIEQTNRRQM 363
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
+ + PP E++ +A+ + I+ +VQ + K R+ N A +
Sbjct: 364 R--------------ALRPPHRKEVL---KAREDEIKSKVQSWMDAAKEPRVENIAKQ 404
>gi|401418091|ref|XP_003873537.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489768|emb|CBZ25028.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 649
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T+IF + H + ++ LG+ A E+ GN Q R ++ KF E
Sbjct: 313 LVALCQNYLKDKTIIFCRYRTTTHRLALVFNALGLPAAEIQGNQLQAERFQAFEKFARSE 372
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
LI TDVA+RGLDI+GV TV+NY +P +L YIHRVGRTAR G+ G +VS+ EV D
Sbjct: 373 VRYLITTDVASRGLDIQGVATVLNYDLPPTLTAYIHRVGRTARIGQTGTAVSLVHEVEDA 432
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + +H++ +K P LA V+ + +V+ L
Sbjct: 433 DIMRKILSVSGAINEHQVAT-----VKRRDVPDALLARATK----DVDDVFPQVRAQLAA 483
Query: 324 EKHDRLLNKADEQVSKA-EKMLKEKKPLHENPPREWFQTKKER 365
E+ + + +A+++ A + L E + REW +++ER
Sbjct: 484 EQLEEKITQAEKRYGTASDGFLNE---VTTKAKREWCLSREER 523
>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|417906606|ref|ZP_12550387.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|341597608|gb|EGS40154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
Length = 511
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVA
Sbjct: 241 DLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA 300
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
ARGLDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 301 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|398012690|ref|XP_003859538.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322497754|emb|CBZ32830.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 650
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 14/223 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T+IF + H + ++ LG+ A E+ GN Q R ++ KF E
Sbjct: 313 LVALCQNYLKDKTIIFCRYRTTTHRLALVFNALGLPAAEIQGNQLQEERFQAFEKFARSE 372
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
LI TDVA+RGLDI+GV TV+NY +P +L YIHRVGRTAR G+ G +VS+ EV D
Sbjct: 373 VRYLITTDVASRGLDIQGVATVLNYDLPPTLTAYIHRVGRTARIGQTGTAVSLVHEVEDA 432
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + +H++ +K P LA K ++ I +V+ L
Sbjct: 433 DIMRKILSVSGAINEHQVAT-----VKRRDVPDALLA----KATKDIDDIFPQVRAQLAA 483
Query: 324 EKHDRLLNKADEQVSKA-EKMLKEKKPLHENPPREWFQTKKER 365
E+ + + +A+++ A + L E + REW +++ER
Sbjct: 484 EQLEEKIAQAEKRYGTASDGFLNE---VTTKAKREWCLSREER 523
>gi|146081796|ref|XP_001464351.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134068443|emb|CAM66733.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 650
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 14/223 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T+IF + H + ++ LG+ A E+ GN Q R ++ KF E
Sbjct: 313 LVALCQNYLKDKTIIFCRYRTTTHRLALVFNALGLPAAEIQGNQLQEERFQAFEKFARSE 372
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
LI TDVA+RGLDI+GV TV+NY +P +L YIHRVGRTAR G+ G +VS+ EV D
Sbjct: 373 VRYLITTDVASRGLDIQGVATVLNYDLPPTLTAYIHRVGRTARIGQTGTAVSLVHEVEDA 432
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + +H++ +K P LA K ++ I +V+ L
Sbjct: 433 DIMRKILSVSGAINEHQVAT-----VKRRDVPDALLA----KATKDIDDIFPQVRAQLAA 483
Query: 324 EKHDRLLNKADEQVSKA-EKMLKEKKPLHENPPREWFQTKKER 365
E+ + + +A+++ A + L E + REW +++ER
Sbjct: 484 EQLEEKIAQAEKRYGTASDGFLNE---VTTKAKREWCLSREER 523
>gi|289550302|ref|YP_003471206.1| cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|385783930|ref|YP_005760103.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|418415253|ref|ZP_12988459.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418635602|ref|ZP_13197976.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|339894186|emb|CCB53451.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|374841707|gb|EHS05164.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|410875260|gb|EKS23185.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 504
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|440712534|ref|ZP_20893150.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436442689|gb|ELP35800.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 489
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
+CF D+ LL + T++F TK A + L G+KA +HGN
Sbjct: 239 ICFV----AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNK 294
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ +R+ +L KFK++E DVL+ATDVAARG+DI G++TVINY P++ E Y+HR+GRT RA
Sbjct: 295 TQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRA 354
Query: 249 GKGGVSVSMAG 259
G+ G +V G
Sbjct: 355 GREGETVMFCG 365
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RKDT+L LV +IF T EA + ILL LG A LHG L+Q +R
Sbjct: 281 RKDTYL------IYLVNEFAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSAR 334
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KFK ++L+ATDVAARGLDI V V+N+ +P + YIHRVGRTARAGK G+
Sbjct: 335 LGALNKFKGGSREILVATDVAARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGI 394
Query: 254 SVSMAGEVDRKLVKQV 269
++S+A + D ++ +++
Sbjct: 395 AISIATQYDLEIYQRI 410
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 14/160 (8%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D +IFV TKR A E+ I L G E HGNL+Q R +++F+D + +++ATD+A
Sbjct: 243 DTAIIFVRTKRTASELTIKLQEAGHSVDEYHGNLSQIQRERLVKRFRDGKVKMIVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++++ +DR+++KQ+ + +
Sbjct: 303 ARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKTGTAIALIQPMDRRMLKQIERRLR 362
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEI--VDKYRAKVEA 312
RL+T P E +DK +A V+A
Sbjct: 363 ------------VRLETAKIPNRAQVEAKRIDKLQATVKA 390
>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
Length = 443
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRKDT---- 137
+ +D E + A W K T+ +A++ L LL PV + R RK
Sbjct: 171 FGQDAEKIAAETRWRKHTWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWY 230
Query: 138 ----HLDRKALLAALVCRTFKDHTMIFVPTKREA-HEMHILLGLLGIKAGELHGNLTQPS 192
+LD K L A + + F+ +I +REA E+ L G+++ L G++ Q
Sbjct: 231 YHADNLDHKTKLLARLIKDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQ 290
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +++ + KD +VL++TDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G
Sbjct: 291 RNQAINRLKDSVVNVLVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKG 350
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++S+ D KL+ ++ + + P+K RII PR K P
Sbjct: 351 SAISLVEAHDYKLLGKIKRYTEEPLKPRIIEGLEPRTKAP 390
>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
1]
Length = 485
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
+CF D+ LL + T++F TK A + L G+KA +HGN
Sbjct: 235 ICFV----AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNK 290
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ +R+ +L KFK++E DVL+ATDVAARG+DI G++TVINY P++ E Y+HR+GRT RA
Sbjct: 291 TQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRA 350
Query: 249 GKGGVSVSMAG 259
G+ G +V G
Sbjct: 351 GREGETVMFCG 361
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
+KDT+L LV T++F T E + ILL LG A LHG L+Q SR
Sbjct: 291 QKDTYL------VYLVNEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSR 344
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KF+ D+L+ATDVAARGLDI V V+NY MP + YIHRVGRTARAGK GV
Sbjct: 345 LGALNKFRAGTRDILVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGV 404
Query: 254 SVSMAGEVDRKLVKQV 269
++++ + D ++ ++
Sbjct: 405 AINLVTQYDLEIYARI 420
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TKR A E+ L G A E HG+L Q R + +R+FKD + +++ATD+A
Sbjct: 243 ESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VIN+ +P + E YIHR+GRT RAGK G ++++ DR+L++Q+ + K
Sbjct: 303 ARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVK 362
Query: 275 NPVKHRIIP 283
+K IP
Sbjct: 363 QSLKVSTIP 371
>gi|386713333|ref|YP_006179656.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
gi|384072889|emb|CCG44380.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
Length = 395
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 87/141 (61%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR A +++ L G +A ELHG+L+Q R + +++F+D + L+ATDVAARG
Sbjct: 244 LIFCRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LD+ GV V NY +P E YIHR+GRT RAG G++++ A DR+ ++ + K+ K +
Sbjct: 304 LDVEGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQALQSIEKSIKQKI 363
Query: 278 KHRIIPPGYPRLKTPSFPPPP 298
+ R + P + S PP
Sbjct: 364 ERRSLANLSPGKEKESKSEPP 384
>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
Length = 525
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 260 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 319
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+ V
Sbjct: 320 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI-----EDV 374
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
R + + PP E++ +A+ + I+ +VQ ++++ RL A E
Sbjct: 375 NGR---------RMNALRPPHRKEVL---KAREDDIKEKVQNWMSKDNEARLQRIASE 420
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
+KD HL L+ T++F T E + ILL LG A LHG L+Q SR
Sbjct: 286 QKDVHL------IYLINEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSR 339
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KF+ D+L+ATDVAARGLDI V V+NY +P + Y+HRVGRTARAGK GV
Sbjct: 340 LGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGV 399
Query: 254 SVSMAGEVD 262
++S+ + D
Sbjct: 400 AISLVTQYD 408
>gi|429205509|ref|ZP_19196781.1| ATP-dependent RNA helicase [Lactobacillus saerimneri 30a]
gi|428146120|gb|EKW98364.1| ATP-dependent RNA helicase [Lactobacillus saerimneri 30a]
Length = 477
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D T++F TKR E+ L G A +HG+LTQ R+E LRKFK+ + D+L+ATDVA
Sbjct: 240 DLTIVFGRTKRRVDEVARGLEARGYNAAGIHGDLTQQRRMEILRKFKEGQLDILVATDVA 299
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIK 271
ARGLDI GV V NY +P E Y+HR+GRT RAGK GVSV+ E+D ++++ + K
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGVSVTFVTPNEMDYLRVIEHLTK 359
Query: 272 NAKNPVK 278
P+K
Sbjct: 360 KRMTPLK 366
>gi|334133814|ref|ZP_08507355.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333608571|gb|EGL19862.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 434
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 81/127 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
MIF TKR A ++ L G K+ ELHG+L+Q R + +++F+D +L+ATDVAAR
Sbjct: 246 AMIFCRTKRRAASLNADLQERGYKSDELHGDLSQAKREQVMKRFRDASIQLLVATDVAAR 305
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+D+ GV V NY +PH + YIHR+GRT RAG+ GV+V+ A D+ V Q+ + +
Sbjct: 306 GIDVEGVTHVFNYDIPHDAQSYIHRIGRTGRAGQTGVAVTFASPRDQVYVDQIEQGIRQQ 365
Query: 277 VKHRIIP 283
++ + P
Sbjct: 366 LRRQDAP 372
>gi|421610730|ref|ZP_16051896.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408498514|gb|EKK03007.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 556
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
+CF D+ LL + T++F TK A + L G+KA +HGN
Sbjct: 306 ICFV----AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNK 361
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ +R+ +L KFK++E DVL+ATDVAARG+DI G++TVINY P++ E Y+HR+GRT RA
Sbjct: 362 TQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRA 421
Query: 249 GKGGVSVSMAGEVDRKLVKQVIKNAK 274
G+ G +V G + K + + K
Sbjct: 422 GREGETVMFCGGHETKFFTAIEREIK 447
>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
Length = 441
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + +++FV + E+ L GI++ L G + Q R +++ + KD
Sbjct: 239 LLARLISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDG 298
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G +VS+ D
Sbjct: 299 VVNVLVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDY 358
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + P+K RII PR K P
Sbjct: 359 KLLGKIKRYTEEPLKPRIIEGLAPRTKAP 387
>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
gi|123660708|sp|Q4L7W0.1|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 503
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 149 VCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
+CR +IF TKR E+ L G +HG++ Q RL +LRKFK+
Sbjct: 234 LCRILDVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGS 293
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
+ L+ATDVAARG+D+ V VINY +P E Y+HR+GRT RA K G++ S+ +
Sbjct: 294 LEFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYI 353
Query: 265 LVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEE 324
L+KQ+ K K+ ++ + IP + D Y AK + IE +V+ I++E+
Sbjct: 354 LLKQIEKFTKSKIRRKEIPT-----------------VDDIYEAKYKNIEEQVKSIISED 396
Query: 325 KHDRLLNKADE 335
+ + A E
Sbjct: 397 NYKNFIPIATE 407
>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
Length = 441
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRKDT---- 137
+ +D E + A W K T+ +A++ L +L PV + R RK
Sbjct: 168 FGQDAEKIAAETRWRKYTWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWY 227
Query: 138 -HLD----RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
H D + LLA L+ + +++FV + E+ L GI++ L G + Q
Sbjct: 228 YHADNLEHKTKLLARLISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQ 287
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +++ + KD +VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G
Sbjct: 288 RNQAIARLKDGVVNVLVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKG 347
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
+VS+ D KL+ ++ + + P+K RII PR K P
Sbjct: 348 SAVSLVEAHDYKLLGKIKRYTEEPLKPRIIEGLAPRTKAP 387
>gi|387772360|ref|ZP_10128308.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
gi|386906617|gb|EIJ71343.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
Length = 445
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
LA L+ D ++FV + + E+ L GI++ L G + Q R +++ + KD
Sbjct: 244 LARLISELSMDKAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAISRLKDGI 303
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
+VLI+TDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D K
Sbjct: 304 VNVLISTDVAARGIDIDNVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYK 363
Query: 265 LVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
L+ ++ + + P+K R+I PR K P
Sbjct: 364 LLGKIKRYTEEPLKPRVIEGLEPRTKAP 391
>gi|401880747|gb|EJT45062.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 582
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 77/116 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF AH +H++L LGI++ LH LTQP RL SL +F+ + VL+ TDV +R
Sbjct: 407 TIIFTQRTATAHLLHLMLNELGIRSVALHSGLTQPERLLSLARFRARDVPVLVTTDVGSR 466
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
GLD+ V VIN+ P + Y+HRVGRTARAG+GGV+V++ E D +L+ + K+
Sbjct: 467 GLDVPEVALVINWDCPRQSDDYVHRVGRTARAGRGGVAVTVVTERDTELLPAIEKS 522
>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
dendrobatidis JAM81]
Length = 460
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTK-REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
R A LA +V + TMI +K R + I+L LG+K+ LH + Q RL SL K
Sbjct: 260 RDAYLAHIVRESLSGKTMIIFASKCRTCETLRIMLKELGLKSTALHAQMPQNDRLGSLAK 319
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +LIATDV +RGLDI VK VINY +P YIHRVGRTARAG+GG+S+S
Sbjct: 320 FKSGIVPILIATDVGSRGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSLSFVS 379
Query: 260 EVDRKLVKQV 269
E D ++ +
Sbjct: 380 ERDVDIIHNI 389
>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
Length = 471
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R + L+ + ++IF+ KRE E+H L G K LHG++ Q +R ES++
Sbjct: 243 ERNEAIMRLLDKENHSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKA 302
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + DVL+ATDVA+RGLDI V V NY +P + E YIHR+GRT RAGK GV++++
Sbjct: 303 FKSKLADVLVATDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVT 362
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIP 283
++ K ++++ K+ + ++ IP
Sbjct: 363 PLEYKELQRMQKDIGSSIELYEIP 386
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 17/198 (8%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR L ++ +IF TKR E+ + G +HG++ Q RL +L
Sbjct: 227 HKDRFESLCRILDVDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTL 286
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
RKFK+ D L+ATDVAARG+D+ V VINY +P E Y+HR+GRT RA K G++ S+
Sbjct: 287 RKFKEGSLDFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSL 346
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEV 317
+ L+KQ+ K K+ +K + IP I + + AK + IE ++
Sbjct: 347 VTPREYILLKQIEKFTKSKIKRKDIPT-----------------IDEIFEAKYKNIEEKI 389
Query: 318 QKILTEEKHDRLLNKADE 335
+K+++E + + A E
Sbjct: 390 KKVISENNYKNFIPIATE 407
>gi|406697360|gb|EKD00623.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 582
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 77/116 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF AH +H++L LGI++ LH LTQP RL SL +F+ + VL+ TDV +R
Sbjct: 407 TIIFTQRTATAHLLHLMLNELGIRSVALHSGLTQPERLLSLARFRARDVPVLVTTDVGSR 466
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
GLD+ V VIN+ P + Y+HRVGRTARAG+GGV+V++ E D +L+ + K+
Sbjct: 467 GLDVPEVALVINWDCPRQSDDYVHRVGRTARAGRGGVAVTVVTERDTELLPAIEKS 522
>gi|417302448|ref|ZP_12089548.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 556
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 129 LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
+CF D+ LL + T++F TK A + L G+KA +HGN
Sbjct: 306 ICFV----AQADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNK 361
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ +R+ +L KFK++E DVL+ATDVAARG+DI G++TVINY P++ E Y+HR+GRT RA
Sbjct: 362 TQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRA 421
Query: 249 GKGGVSVSMAG 259
G+ G +V G
Sbjct: 422 GREGETVMFCG 432
>gi|451979881|ref|ZP_21928289.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
gi|451762901|emb|CCQ89503.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
Length = 436
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 89/138 (64%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
++KALL +L+ + ++F TK A+++ L I+A +HGN +QP+RL++L K
Sbjct: 240 NKKALLESLLGDAQIERVLVFTRTKHGANQVAKRLNQTRIRAEAIHGNKSQPARLQALEK 299
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+ +T VL+ATD+ ARGLD+ G+ VINY +P E Y+HR+GRTARAG G+++S
Sbjct: 300 FRSGKTRVLVATDIVARGLDVDGITHVINYELPKEAESYVHRIGRTARAGATGIALSFCD 359
Query: 260 EVDRKLVKQVIKNAKNPV 277
+R + ++ + K+ V
Sbjct: 360 AGERPYLSRIEREIKSTV 377
>gi|408907437|emb|CCM11467.1| Cold-shock DEAD-box protein A [Helicobacter heilmannii ASB1.4]
Length = 465
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 85/133 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R + L+ + ++IF+ KRE E+H L G K LHG++ Q +R S++
Sbjct: 236 ERNEAIMRLLDKETPSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARQTSIKA 295
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK ++ DVLIATDVA+RGLDI V V NY +P + E YIHR+GRT RAGK GV++++
Sbjct: 296 FKSKQADVLIATDVASRGLDISDVSHVFNYHLPINTESYIHRIGRTGRAGKKGVAITLVT 355
Query: 260 EVDRKLVKQVIKN 272
++ K ++++ K+
Sbjct: 356 PLEYKELQRMQKD 368
>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
30864]
Length = 594
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T+IF T A + ++L LG A LHG LTQP RL +L KFK++ +L+ATDVA
Sbjct: 382 NSTIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVATDVA 441
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
+RGLDI V VINY +P + YIHRVGRTARAG+ G S++M + D +L +++
Sbjct: 442 SRGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRI 496
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 22/240 (9%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ALL+ + + T++F TKR A + L G++A +HG+ Q R +L+ F
Sbjct: 232 KRALLSEMYADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+ + L+ATD+AARG+D+ V VINY +P+ E Y+HR+GRTARAGK GVS+++ +
Sbjct: 292 RAGKVRALVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCAD 351
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI--EGEVQ 318
+R+L+K + + + RI P + R K + +++D EAI G+ +
Sbjct: 352 DERRLLKDI----ERVTRQRI--PSFDRRKDQAL------KLLD------EAILASGQTE 393
Query: 319 KILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKERAAIKTSQAGEGLA 378
K T ++ K D + ++ + ++ P H +P E+ + ++ G A
Sbjct: 394 KPSTPDRLPEHRKKGDPKPGQSSR--RDDGPRHSDPDAEFVHKRSRNRTGSGARGGRPFA 451
>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus H19]
gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus H19]
Length = 506
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|261328097|emb|CBH11074.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 641
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL F++ T+IF + AH + +L ++G + EL GN Q R SL KF E
Sbjct: 302 LVALCTGYFREKTLIFTRYRTTAHRLRLLFNVIGFPSVELQGNQLQEERFASLEKFASGE 361
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
+ L +TDVA+RGLDI+ V TVIN+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 362 VNYLFSTDVASRGLDIKDVSTVINFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRDS 421
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + H+ ++ P L E + K A + E + E
Sbjct: 422 DIMRKILAVSGVVSNHQAAT-----VRRRDVPEELLQEAIKKIDAAFPQVRAE---LAAE 473
Query: 324 EKHDRLLNKADEQVSK--AEKMLKEKKPLHENPPREW 358
E H + + +A+ + + EK+L E + P R W
Sbjct: 474 ELHTK-IERAERRYGREAGEKILTESAAVR--PRRVW 507
>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
Length = 469
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 76/113 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+IFV R H + ++L LGI A LH TQP RL +L +FK + +LIATDVA+R
Sbjct: 300 VIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVASR 359
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
GLDI V V+NY +P + Y+HRVGRTARAG+GG ++S+ E+D +LV +V
Sbjct: 360 GLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEV 412
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK + D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYL-HVIENL--- 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
K R+ TP PP + A +E++E + L E D+ L AD+
Sbjct: 358 TKKRM---------TPMRPPTEKEAFKGQLGAAIESVETK----LDENGLDKYLQAADD 403
>gi|392550672|ref|ZP_10297809.1| ATP-dependent RNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 421
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 140 DRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
DRK LL+ L+CR ++FV K + + L G+ G +HG+ +Q +R +LR
Sbjct: 227 DRKLELLSELICRKGWKQVLVFVNMKEDVQLIVDELTQYGVTVGVMHGDKSQGNRRRALR 286
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+FKD +T +L+ T+VAARGLDI G+ VIN+ +P+ E Y+HR+GRT RAG+ G ++S+
Sbjct: 287 EFKDGKTTILVGTEVAARGLDIAGLPRVINFDLPYLAEDYVHRIGRTGRAGQKGFAISLV 346
Query: 259 GEVDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ ++ Q+ ++ VK RI PG+
Sbjct: 347 SREEEHVLAQIEDLIQDKVK-RIYYPGF 373
>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
Length = 418
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 76/113 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+IFV R H + ++L LGI A LH TQP RL +L +FK + +LIATDVA+R
Sbjct: 249 VIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVASR 308
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
GLDI V V+NY +P + Y+HRVGRTARAG+GG ++S+ E+D +LV +V
Sbjct: 309 GLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEV 361
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK + D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYL-HVIENL--- 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE 335
K R+ TP PP + A +E++E + L E D+ L AD+
Sbjct: 358 TKKRM---------TPMRPPTEKEAFKGQLGAAIESVETK----LDENGLDKYLQAADD 403
>gi|157866744|ref|XP_001681927.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68125378|emb|CAJ03237.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 648
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 14/223 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T+IF + H + ++ LG+ A E+ GN Q R ++ +KF E
Sbjct: 311 LVALCQNYLKDKTIIFCRYRTTTHRLALVFNALGLPAVEIQGNQLQEERFQAFKKFARSE 370
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
LI TDVA+RGLDI+GV TV+NY +P +L YIHRVGRTAR G G +VS+ EV D
Sbjct: 371 VRYLITTDVASRGLDIQGVATVLNYDLPPTLTAYIHRVGRTARIGLTGTAVSLVHEVEDA 430
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + +H++ +K P LA K V+ + +V+ L
Sbjct: 431 DIMRKILSVSGAVNEHQVAT-----VKRRDVPDALLA----KATKDVDDVFPQVRAQLAA 481
Query: 324 EKHDRLLNKADEQVSKA-EKMLKEKKPLHENPPREWFQTKKER 365
E+ + + +A+++ A + L E + REW +++ER
Sbjct: 482 EQLEEKITQAEKRYGTASDGFLNE---VTTKAKREWCLSREER 521
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213
++ ++F TK A + L GI++ +HGN +QP R +L +FK +T +LIATDV
Sbjct: 252 QERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKTPILIATDV 311
Query: 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
AARG+DI GV VINY +P+ E Y+HR+GRTARAGK GV+++ E +R +K + KN
Sbjct: 312 AARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAYLKDIQKN 370
>gi|340053603|emb|CCC47896.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 768
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL R F++ TMIF + H +++L +G+ + EL GN Q R SL KF E
Sbjct: 429 LVALCLRYFREKTMIFTRYRSTTHRLNLLFNAVGLPSVELQGNQQQEERFLSLEKFTSGE 488
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA-----G 259
L +TDVA+RGLDI+ V TVIN+ +P +L YIHRVGRTAR G+ G +VS+
Sbjct: 489 ASYLFSTDVASRGLDIKNVCTVINFDLPPTLTAYIHRVGRTARIGESGTAVSLVDESNDA 548
Query: 260 EVDRKL--VKQVIKNAK-NPVKHRIIP 283
E+ RK+ V ++ N + + V+ R +P
Sbjct: 549 EIMRKILTVSGIVNNHQVSTVRRRDVP 575
>gi|395490699|ref|ZP_10422278.1| DEAD/DEAH box helicase [Sphingomonas sp. PAMC 26617]
Length = 485
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 83/132 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+++ALL L+ + ++F TK A + LLG GI A +HGN +QP R +L +
Sbjct: 235 EKQALLTMLLADGAIERCLVFTRTKHGADRVVKLLGANGIPANAIHGNKSQPQRERALGE 294
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + VL+ATD+AARG+D+ GV V N+ +P+ E Y+HR+GRTARAG G+++S
Sbjct: 295 FKTGKVKVLVATDIAARGIDVSGVSHVFNFELPNVAEQYVHRIGRTARAGASGIAISFCA 354
Query: 260 EVDRKLVKQVIK 271
+ +R ++ + K
Sbjct: 355 DDERSYLRDIEK 366
>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
Length = 506
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|72389070|ref|XP_844830.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176321|gb|AAX70433.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70801364|gb|AAZ11271.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 753
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL F++ T+IF + AH + +L ++G + EL GN Q R SL KF E
Sbjct: 414 LVALCTGYFREKTLIFTRYRTTAHRLRLLFNVIGFPSVELQGNQLQEERFASLEKFASGE 473
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
+ L +TDVA+RGLDI+ V TVIN+ +P +L YIHRVGRTAR G G +VS+ E D
Sbjct: 474 VNYLFSTDVASRGLDIKDVSTVINFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESRDS 533
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + H+ ++ P L E + K A + E + E
Sbjct: 534 DIMRKILAVSGVVSNHQAAT-----VRRRDVPEELLQEAIKKIDAAFPQVRAE---LAAE 585
Query: 324 EKHDRLLNKADEQVSK--AEKMLKEKKPLHENPPREW 358
E H + + +A+ + + EK+L E + P R W
Sbjct: 586 ELHTK-IERAERRYGREAGEKILTESAAVR--PRRVW 619
>gi|410085533|ref|ZP_11282252.1| ATP-dependent RNA helicase SrmB [Morganella morganii SC01]
gi|421493381|ref|ZP_15940738.1| SRMB [Morganella morganii subsp. morganii KT]
gi|455738802|ref|YP_007505068.1| ATP-dependent RNA helicase SrmB [Morganella morganii subsp.
morganii KT]
gi|400192549|gb|EJO25688.1| SRMB [Morganella morganii subsp. morganii KT]
gi|409768242|gb|EKN52306.1| ATP-dependent RNA helicase SrmB [Morganella morganii SC01]
gi|455420365|gb|AGG30695.1| ATP-dependent RNA helicase SrmB [Morganella morganii subsp.
morganii KT]
Length = 448
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F + IE +T T + A +L PV + +
Sbjct: 164 DMGFANDIETIAGETRWRTQTMLFSATLEGQAIRDFAKRILNEPVEIEADPSRRERKKIQ 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
F +R D +KALLA L+ + T++FV + E+ L I + L G +
Sbjct: 224 QFYLRADDLEHKKALLAHLLKQPDVTKTVVFVRKRERVRELSDWLRTQDIVSCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++ + D VLIATDVA+RG+DI + V N+ +P + + Y+HR+GRTARAG
Sbjct: 284 QAKRNEAISRMTDGRATVLIATDVASRGIDIEDISHVFNFDLPRTADVYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ GV+VS+ D+ L+ ++I+ + PVK R+I P+ + PS
Sbjct: 344 RKGVAVSLVESHDQPLLGKIIRYIEEPVKMRVIDELRPKTRAPS 387
>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|417891554|ref|ZP_12535616.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|418283345|ref|ZP_12896092.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|418307556|ref|ZP_12919253.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|418560738|ref|ZP_13125247.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|418889888|ref|ZP_13444016.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418994781|ref|ZP_13542414.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|341851971|gb|EGS92873.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|365167681|gb|EHM59059.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|365245536|gb|EHM86169.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|371971160|gb|EHO88567.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|377741714|gb|EHT65700.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|377751205|gb|EHT75138.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 506
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|16125088|ref|NP_419652.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 476
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 82/137 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LLA L T T++F TKR A + L GI+A +HG+ TQ R +L F
Sbjct: 232 KRPLLAELFADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E L+ATD+AARG+D+ V VINY +P+ E Y+HR+GRTAR GK G+++S +
Sbjct: 292 KAGEMRALVATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCAD 351
Query: 261 VDRKLVKQVIKNAKNPV 277
+R L+K + K + +
Sbjct: 352 DERNLLKDIQKATRQTI 368
>gi|453382028|dbj|GAC83496.1| putative ATP-dependent RNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 565
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 274 LDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALK 333
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 334 KFRDGSIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTL 392
>gi|154334430|ref|XP_001563462.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060483|emb|CAM42030.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 683
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L AL KD T+IF + H + ++ LG+ E+ GN Q R ++ KF E
Sbjct: 346 LVALCHNYLKDKTIIFCRYRTTTHRLTLVFKALGLSVAEVQGNQLQEERFQAFEKFARSE 405
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DR 263
LI TDVA+RGLDI+GV TV+NY +P +L YIHRVGRTAR G+ G +VS+ EV D
Sbjct: 406 VRYLITTDVASRGLDIQGVATVLNYDLPPTLTAYIHRVGRTARIGQTGTAVSLVHEVEDA 465
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
++++++ + H++ +K P LA K V+++ +V+ L
Sbjct: 466 DIMRKILSVSGAINDHQVAT-----VKRRDVPDALLA----KATKDVDSVFPQVRAQLAA 516
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKK-----PLHENPPREWFQTKKER 365
E + +E++S+AE+ K + REW +++ER
Sbjct: 517 E-------QLEEKISQAERRYGATKDGFLSEVTTKAKREWCLSREER 556
>gi|308050782|ref|YP_003914348.1| DEAD/DEAH box helicase [Ferrimonas balearica DSM 9799]
gi|307632972|gb|ADN77274.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
9799]
Length = 444
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 142 KALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK 201
K LLA C MIF T+ A E+H L I+ L G + Q R ++L +F+
Sbjct: 237 KRLLADPEC----TRAMIFTKTRDRATELHAKLFAAKIRTAVLQGAMVQGKRDDALERFR 292
Query: 202 DEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261
+ VL+ATDVAARG+DI V VIN+ +P + E Y+HR+GRTARAG G+++++
Sbjct: 293 EGRVQVLVATDVAARGIDIANVTHVINFDLPRTSEVYLHRIGRTARAGAKGMALNLVEAH 352
Query: 262 DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPP 297
D ++ ++ + P+K R+I PR K PSF P
Sbjct: 353 DMPMLDRIQRYIDEPIKVRVIESLRPRSKAPSFSKP 388
>gi|172040180|ref|YP_001799893.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823164|ref|YP_007416329.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7111]
gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7109]
gi|448276661|gb|AGE36085.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
DSM 7111]
Length = 497
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 80/121 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LDR + L+ ++ + T++F PTKR+A + L G + G +HG++ Q R +SL+
Sbjct: 256 LDRMSTLSRILQSPGRGRTIVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQ 315
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+D DV++ATDVAARG+D+ V V+NY++P Y+HR+GRTARAGK G ++++
Sbjct: 316 LFRDGAVDVMVATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAGKDGTAITLV 375
Query: 259 G 259
G
Sbjct: 376 G 376
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 263 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 378
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE +++ E D+ L A+
Sbjct: 379 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESDIE----ENGLDKYLESAEAL 425
Query: 337 VSK 339
+ K
Sbjct: 426 LEK 428
>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
gi|123548216|sp|Q2YUH3.1|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
Length = 506
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|418915213|ref|ZP_13469180.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377754656|gb|EHT78563.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
Length = 515
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE +++ E D+ L A+
Sbjct: 358 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESDIE----ENGLDKYLESAEAL 404
Query: 337 VSK 339
+ K
Sbjct: 405 LEK 407
>gi|384550878|ref|YP_005740130.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 543
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 82/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 269 LDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALK 328
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F+D DVL+ATDVAARG+DI V VINY++P ++Y+HR+GRT RAG+ G++V++
Sbjct: 329 RFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTGIAVTL 387
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 69/99 (69%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ LGL G A +HG+L+Q R+ LR+FK+ + D+LIATDVAARG
Sbjct: 244 IIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V N+ +P E Y+HR+GRT RAGK GV+V+
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVT 342
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 81/136 (59%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H+ + L LV T+IF T EA + ILL L A LHG L+Q RL +L
Sbjct: 281 HMHKDVYLIYLVNEFAGQTTIIFTRTVNEAQRLSILLRTLSFGAIPLHGQLSQSMRLGAL 340
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KFK + D+L+ATDVAARGLDI V VINY +P YIHRVGRTARAG+ G ++S+
Sbjct: 341 NKFKAKSRDILVATDVAARGLDIPEVDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISI 400
Query: 258 AGEVDRKLVKQVIKNA 273
+ D +L ++ K A
Sbjct: 401 VTQYDVELWMRIEKAA 416
>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
N315]
gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486874|ref|YP_044095.1| helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57650754|ref|YP_186888.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus COL]
gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH9]
gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH1]
gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|379015208|ref|YP_005291444.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|379021757|ref|YP_005298419.1| cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|384865266|ref|YP_005750625.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|384870631|ref|YP_005753345.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|385782321|ref|YP_005758492.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
11819-97]
gi|386831664|ref|YP_006238318.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387143797|ref|YP_005732191.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|387151207|ref|YP_005742771.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|387781060|ref|YP_005755858.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|415688401|ref|ZP_11452116.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|415694064|ref|ZP_11455644.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|416841693|ref|ZP_11904548.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|416847139|ref|ZP_11906948.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|417650388|ref|ZP_12300160.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|417651619|ref|ZP_12301379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|417655380|ref|ZP_12305093.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|417799422|ref|ZP_12446562.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|417803227|ref|ZP_12450272.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|417892680|ref|ZP_12536727.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|417897497|ref|ZP_12541428.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|417900259|ref|ZP_12544149.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|417905571|ref|ZP_12549379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|418277254|ref|ZP_12891868.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|418286656|ref|ZP_12899297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|418313951|ref|ZP_12925433.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|418319265|ref|ZP_12930649.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|418320043|ref|ZP_12931407.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|418425251|ref|ZP_12998345.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428143|ref|ZP_13001132.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431028|ref|ZP_13003930.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434933|ref|ZP_13006785.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437701|ref|ZP_13009479.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440630|ref|ZP_13012317.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443605|ref|ZP_13015192.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446602|ref|ZP_13018064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449687|ref|ZP_13021059.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452527|ref|ZP_13023850.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455483|ref|ZP_13026734.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458359|ref|ZP_13029550.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418562003|ref|ZP_13126472.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|418567928|ref|ZP_13132287.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|418571317|ref|ZP_13135553.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|418572707|ref|ZP_13136913.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|418580004|ref|ZP_13144094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418599110|ref|ZP_13162606.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|418638750|ref|ZP_13201033.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|418641112|ref|ZP_13203326.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|418645440|ref|ZP_13207562.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|418646512|ref|ZP_13208614.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|418649117|ref|ZP_13211147.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|418652298|ref|ZP_13214266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|418655867|ref|ZP_13217699.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|418658669|ref|ZP_13220382.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|418661301|ref|ZP_13222893.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|418871169|ref|ZP_13425556.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|418875945|ref|ZP_13430194.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418878939|ref|ZP_13433170.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881777|ref|ZP_13435989.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884407|ref|ZP_13438597.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418887111|ref|ZP_13441254.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418895677|ref|ZP_13449768.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418904421|ref|ZP_13458458.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418907013|ref|ZP_13461034.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912631|ref|ZP_13466608.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|418920910|ref|ZP_13474838.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418926494|ref|ZP_13480390.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418929425|ref|ZP_13483309.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418932399|ref|ZP_13486227.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418935062|ref|ZP_13488879.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418947874|ref|ZP_13500213.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|418950869|ref|ZP_13503007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|418955800|ref|ZP_13507736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|418989148|ref|ZP_13536816.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991998|ref|ZP_13539656.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419774795|ref|ZP_14300752.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|419783577|ref|ZP_14309361.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|421150952|ref|ZP_15610603.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|424786070|ref|ZP_18212863.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|440707003|ref|ZP_20887718.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|440735442|ref|ZP_20915048.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443637665|ref|ZP_21121736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443640144|ref|ZP_21124139.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|448742179|ref|ZP_21724131.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|448743158|ref|ZP_21725070.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
gi|81648913|sp|Q6G7M9.1|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
gi|81694077|sp|Q5HEB9.1|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SACOL2072
gi|81704263|sp|Q7A0D2.1|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
gi|81705333|sp|Q7A4G0.1|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
gi|81781186|sp|Q99SH6.1|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
gi|122538977|sp|Q2FWH5.1|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAOUHSC_02316
gi|123484971|sp|Q2FF45.1|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAUSA300_2037
gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus COL]
gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156722532|dbj|BAF78949.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|334272865|gb|EGL91220.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|334273753|gb|EGL92092.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|341839595|gb|EGS81175.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|341843034|gb|EGS84266.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|341848939|gb|EGS90094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|341857246|gb|EGS98062.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|344178162|emb|CCC88648.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|359831066|gb|AEV79044.1| Cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|364523310|gb|AEW66060.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365165869|gb|EHM57617.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|365173732|gb|EHM64218.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|365228359|gb|EHM69543.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|365234565|gb|EHM75495.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|365241002|gb|EHM81759.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|371974841|gb|EHO92156.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|371980485|gb|EHO97691.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|371981117|gb|EHO98304.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|371984051|gb|EHP01178.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|374363905|gb|AEZ38010.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|374398160|gb|EHQ69350.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|375019875|gb|EHS13425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|375020751|gb|EHS14267.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|375022082|gb|EHS15574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|375022959|gb|EHS16425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|375030376|gb|EHS23693.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|375032669|gb|EHS25895.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|375035253|gb|EHS28383.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|375037800|gb|EHS30808.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|375039092|gb|EHS32036.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|375369103|gb|EHS72994.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|375370525|gb|EHS74330.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|375374056|gb|EHS77700.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|375375282|gb|EHS78872.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|377692852|gb|EHT17231.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377692975|gb|EHT17352.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377693343|gb|EHT17715.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377711481|gb|EHT35712.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377713240|gb|EHT37449.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377715676|gb|EHT39863.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377721138|gb|EHT45279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|377721406|gb|EHT45538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377723840|gb|EHT47961.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377729773|gb|EHT53856.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377736617|gb|EHT60632.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377739857|gb|EHT63857.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377741345|gb|EHT65334.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377761469|gb|EHT85340.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377762455|gb|EHT86318.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377768371|gb|EHT92154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377769295|gb|EHT93069.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383364874|gb|EID42179.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|383971463|gb|EID87538.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|385197056|emb|CCG16701.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387716292|gb|EIK04351.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716987|gb|EIK05022.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387717047|gb|EIK05073.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387723829|gb|EIK11540.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725446|gb|EIK13060.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|387728589|gb|EIK16073.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733388|gb|EIK20572.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|387734873|gb|EIK22022.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387735068|gb|EIK22207.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|387742473|gb|EIK29288.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|387743010|gb|EIK29809.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387744154|gb|EIK30925.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394329036|gb|EJE55163.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|421955596|gb|EKU07932.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|436430653|gb|ELP28012.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436506489|gb|ELP42284.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|443405200|gb|ELS63809.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443405702|gb|ELS64297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|445547050|gb|ELY15324.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|445563511|gb|ELY19670.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|417795517|ref|ZP_12442737.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
gi|334270877|gb|EGL89273.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|384867000|ref|YP_005747196.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus TCH60]
gi|422743011|ref|ZP_16797007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745973|ref|ZP_16799908.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424771982|ref|ZP_18199098.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH60]
gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|402347512|gb|EJU82540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|408424041|emb|CCJ11452.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408426030|emb|CCJ13417.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408428018|emb|CCJ15381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408430007|emb|CCJ27172.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408431993|emb|CCJ19308.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408433988|emb|CCJ21273.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408435980|emb|CCJ23240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408437963|emb|CCJ25206.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
Length = 517
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 255 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 314
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 315 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 371
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 372 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 409
>gi|418595150|ref|ZP_13158775.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
gi|374402283|gb|EHQ73315.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|417898362|ref|ZP_12542283.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
gi|341848722|gb|EGS89882.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|409386471|ref|ZP_11238869.1| Cold-shock DEAD-box protein A [Lactococcus raffinolactis 4877]
gi|399206265|emb|CCK19784.1| Cold-shock DEAD-box protein A [Lactococcus raffinolactis 4877]
Length = 517
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 100/189 (52%), Gaps = 20/189 (10%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L LLG +A +HG+L Q RL LR FK++ DVL+ATDVAARG
Sbjct: 242 IVFGRTKRRVDEITRGLKLLGYRAEGIHGDLAQQKRLAVLRDFKNDNLDVLVATDVAARG 301
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V NY + E Y+HR+GRT RAGK G+S++ + ++ + + K +
Sbjct: 302 LDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGLSITFVSNNEMGYLRAIERLTKKEM 361
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQV 337
K PP E Y+A + E+++ LT+ K L+K D+
Sbjct: 362 K--------------GMKPPTREE---AYQASLAVAFDEIKRDLTDPKISAKLDKFDQD- 403
Query: 338 SKAEKMLKE 346
AE +L E
Sbjct: 404 --AENLLAE 410
>gi|425738293|ref|ZP_18856558.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
gi|425479966|gb|EKU47136.1| hypothetical protein C273_07847 [Staphylococcus massiliensis S46]
Length = 495
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ D+L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G +V+ ++ ++Q+ K +
Sbjct: 304 LDISGVSHVYNFDIPQDPESYTHRIGRTGRAGKEGSAVTFVNPIEMDYIRQIETVNKRQM 363
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
+ + PP E++ +A+ + I+ +VQ + +E RL
Sbjct: 364 R--------------ALRPPHRKEVL---KAREDDIKNKVQTWIDKENEPRL 398
>gi|336452449|ref|YP_004606915.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
gi|335332476|emb|CCB79203.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
Length = 470
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R + L+ + ++IF+ KRE E+H L G K+ LHG++ Q +R ES++
Sbjct: 242 ERNEAIMRLLDKENHTKSIIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQA 301
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + DVL+ATDVA+RGLDI V V NY +P + E YIHR+GRT RAGK GV++++
Sbjct: 302 FKTKRADVLVATDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVT 361
Query: 260 EVDRK 264
++ K
Sbjct: 362 PLEYK 366
>gi|418315814|ref|ZP_12927266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
gi|365242402|gb|EHM83109.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
Length = 517
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 255 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 314
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 315 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 371
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 372 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 409
>gi|387603359|ref|YP_005734880.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|404479359|ref|YP_006710789.1| helicase [Staphylococcus aureus 08BA02176]
gi|418310467|ref|ZP_12922007.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|365236654|gb|EHM77538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|404440848|gb|AFR74041.1| putative helicase [Staphylococcus aureus 08BA02176]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|384862733|ref|YP_005745453.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
Length = 506
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|386729768|ref|YP_006196151.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
gi|418979357|ref|ZP_13527153.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|379992788|gb|EIA14238.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|384231061|gb|AFH70308.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
Length = 517
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 255 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 314
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 315 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366
>gi|226328152|ref|ZP_03803670.1| hypothetical protein PROPEN_02043 [Proteus penneri ATCC 35198]
gi|225203856|gb|EEG86210.1| DEAD/DEAH box helicase [Proteus penneri ATCC 35198]
Length = 385
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F + IE +T T + NA + +L PV L +
Sbjct: 126 DMGFANDIETIAGETRWRKQTLLFSATLEGNAVIDFAQRILNEPVELNADPSRRERKKIQ 185
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
F D + ALLAAL+ + +++FV + E+ L GIK L G +
Sbjct: 186 QFYYHADNLEHKTALLAALLKQNDVKKSIVFVRKRERVRELVTALEKQGIKCSYLEGEMA 245
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R +++++ + + +VL+ATDVA+RGLD+ + V N+ +P + + Y+HR+GRT RAG
Sbjct: 246 QTQRNDAIKRLESGKMNVLVATDVASRGLDLDDITHVFNFDLPRTADVYLHRIGRTGRAG 305
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
+ G+++S+ D L+ ++ + + P+K+R+I P K PS
Sbjct: 306 RKGIAISLVEAHDHPLLGKIGRYVQEPIKYRVIAELRPETKAPSL 350
>gi|449019765|dbj|BAM83167.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 627
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
HL R+ LL L + T++FV TKR A + L G A +HG+ +Q R +SL
Sbjct: 416 HLKREMLLDLL--NSIPGLTLVFVDTKRAADALEDFLLRHGYAASSIHGDRSQREREDSL 473
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ +T +L+ATDVAARGLDI V V+NY +P +++ Y+HR+GRT RAG G++ S
Sbjct: 474 AAFRSGQTPILVATDVAARGLDIPNVAHVVNYELPAAIDDYVHRIGRTGRAGNQGIATSF 533
Query: 258 AGEVDRKLVKQVIK 271
A E +R +V+ +I+
Sbjct: 534 ANEKNRGIVRDLIE 547
>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WW2703/97]
Length = 467
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 205 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 264
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 265 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANGR- 322
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 323 ------------KMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 359
>gi|158514834|sp|A3LS22.3|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 484
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T+ IL +LG A LHG+LTQ RL SL KFK ++LIATDVAARG
Sbjct: 314 IIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARG 373
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI V VINY +P + Y+HRVGRTARAG+ G S+S+ + D ++ ++ ++ +
Sbjct: 374 LDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQK-- 431
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEI----VDKYRAKVEAI 313
K P P PP A + V RA EAI
Sbjct: 432 ------------KLPKDPSPPKAMLDALHVHVDRAYAEAI 459
>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
Length = 412
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKD----HTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188
I D +L R+ L + FKD HT+IFV +KR A + L GI+A + HG+L
Sbjct: 226 IEVDANLRRQVL-----QKLFKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDL 280
Query: 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248
TQ R++ L++F++++ +LIATD+AARG+DI + VINY +P S Y+HR+GRT RA
Sbjct: 281 TQDERIKVLKRFQNKDFPILIATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRA 340
Query: 249 GKGGVSVSM 257
G+ GV++S
Sbjct: 341 GQKGVAISF 349
>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|415684901|ref|ZP_11449930.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|417887143|ref|ZP_12531279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|418565159|ref|ZP_13129574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|418582899|ref|ZP_13146972.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418600951|ref|ZP_13164400.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|418892594|ref|ZP_13446705.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898667|ref|ZP_13452734.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418901468|ref|ZP_13455519.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909906|ref|ZP_13463896.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|418918125|ref|ZP_13472079.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923794|ref|ZP_13477706.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418983027|ref|ZP_13530731.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986647|ref|ZP_13534328.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81650664|sp|Q6GEZ3.1|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|341858415|gb|EGS99208.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|371974783|gb|EHO92099.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|374400368|gb|EHQ71483.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|377700704|gb|EHT25038.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377702654|gb|EHT26974.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377702762|gb|EHT27081.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377709133|gb|EHT33404.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377729734|gb|EHT53820.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377732973|gb|EHT57022.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377748968|gb|EHT72922.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377749869|gb|EHT73808.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|377758226|gb|EHT82112.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 506
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 360
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 361 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 398
>gi|453366265|dbj|GAC78040.1| putative ATP-dependent RNA helicase [Gordonia malaquae NBRC 108250]
Length = 525
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G K G +HG+L Q +R +SL
Sbjct: 266 LDKAELVARILQADGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKSLG 325
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 326 KFRDGTVDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 384
>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 517
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 255 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 314
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 315 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 366
>gi|379796406|ref|YP_005326407.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873399|emb|CCE59738.1| Probable DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 506
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|238897679|ref|YP_002923358.1| ATP-dependent RNA helicase SrmB [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465436|gb|ACQ67210.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 454
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 17/221 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL----------CLLCFR 132
+ +D E++ A W K T +A++ S +LR P+ L +L
Sbjct: 167 FAQDIEVISAETRWRKQTLLFSATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSY 226
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
R D + ALL L+ ++IFV T+ + HE+ L GI +G L G + Q
Sbjct: 227 YRSDNLPHKIALLCYLLKTPSVQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTK 286
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R E++ + VL+ATDVA+RGLDI + V N+ MP++ + Y+HR+GRTARAG+ G
Sbjct: 287 RTEAIARLNSGRIQVLVATDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKG 346
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+K+V + K +K R++ P K P+
Sbjct: 347 TAISLIEAHDHLLLKKVERYLKKTIKPRVVDELRPTTKAPN 387
>gi|384548306|ref|YP_005737559.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
Length = 487
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 17/172 (9%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 225 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 284
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q I++A
Sbjct: 285 LDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQ-IEDANG-- 341
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRL 329
K + PP E++ +A+ + I+ +V+ +++E RL
Sbjct: 342 -----------RKMSALRPPHRKEVL---QAREDDIKEKVENWMSKESESRL 379
>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|416377119|ref|ZP_11683540.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|357266298|gb|EHJ14951.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
Length = 480
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 83/129 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L +G E HGNL+Q R + +F+D + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ VDR++V+Q+ + +
Sbjct: 303 ARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQIERKLR 362
Query: 275 NPVKHRIIP 283
++ IP
Sbjct: 363 QKLETCKIP 371
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 263 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 378
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE + L E D+ L A+
Sbjct: 379 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESD----LEENGLDKYLESAEAL 425
Query: 337 VSK 339
+ K
Sbjct: 426 LEK 428
>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 494
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 81/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TMIF TKR A ++ LG G K G +HG+L Q +R ++L+
Sbjct: 246 LDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALK 305
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK G++V++
Sbjct: 306 SFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTL 364
>gi|421882169|ref|ZP_16313452.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
gi|375315618|emb|CCF81448.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
Length = 434
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Query: 154 KDHT--MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT 211
++HT +IF+ KRE E+H L G K+ LHG++ Q +R ES++ FK + DVL+AT
Sbjct: 218 ENHTKSIIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQAFKTKRADVLVAT 277
Query: 212 DVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
DVA+RGLDI V V NY +P + E YIHR+GRT RAGK GV++++ ++ K
Sbjct: 278 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYK 330
>gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
98-5491]
gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
98-5491]
gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
Length = 505
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ + L+ +IF K+EA + L G KAG LHG++ Q R +S++
Sbjct: 232 EREDAIVRLIDSEMPSKAIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKA 291
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD +VL+ATD+AARGLDI GV V N+ +P + E Y+HR+GRT RAGK GV++++A
Sbjct: 292 FKDSSINVLVATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLAT 351
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIP 283
++ K ++++ +N K ++ IP
Sbjct: 352 PLEFKELRRIKENTKAKIELYEIP 375
>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
6054]
gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
6054]
Length = 396
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T+ IL +LG A LHG+LTQ RL SL KFK ++LIATDVAARG
Sbjct: 226 IIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARG 285
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI V VINY +P + Y+HRVGRTARAG+ G S+S+ + D ++ ++ ++ +
Sbjct: 286 LDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQK-- 343
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEI----VDKYRAKVEAI 313
K P P PP A + V RA EAI
Sbjct: 344 ------------KLPKDPSPPKAMLDALHVHVDRAYAEAI 371
>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 441
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LL AL+ + ++F TKR A E+ + L GI A LHG++ Q R +L + +
Sbjct: 235 LLHALLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQG 294
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
VL+ATDVAARG+D+ G+ VIN+ P E Y+HR+GRT RAG+ G++++++G +
Sbjct: 295 RIGVLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAITLSGPRET 354
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPP 297
L++ + + + + IP P + P+ P P
Sbjct: 355 GLIRAIERFTGDRLAVHTIPGMEPSPRKPAGPRP 388
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RKDT+L LV +IF T E + ILL LG A LHG L+Q SR
Sbjct: 282 RKDTYL------IYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSR 335
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KFK ++L+ATDVAARGLDI V V+N +P + YIHRVGRTARAGK G+
Sbjct: 336 LGALNKFKGGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGI 395
Query: 254 SVSMAGEVDRKLVKQV 269
++S+ + D ++ +++
Sbjct: 396 AISIVTQYDVEIYQRI 411
>gi|422868322|ref|ZP_16914868.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
Length = 457
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 184 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 243
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 244 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 299
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE + L E D+ L A+
Sbjct: 300 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESD----LEENGLDKYLESAEAL 346
Query: 337 VSK 339
+ K
Sbjct: 347 LEK 349
>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
Length = 445
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 118/220 (53%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRKDT---- 137
+ +D E + A W K T+ +A++ L LL PV + R RK
Sbjct: 171 FGQDAEKIAAETRWRKHTWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWY 230
Query: 138 ----HLDRKALLAALVCRTFKDHTMIFVPTKREA-HEMHILLGLLGIKAGELHGNLTQPS 192
+LD K L A + F+ +I +REA E+ L G+++ L G++ Q
Sbjct: 231 YHADNLDHKTKLLARLINDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQ 290
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +++ + K+ +VL++TDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G
Sbjct: 291 RNQAINRLKENVVNVLVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKG 350
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++S+ D KL+ ++ + + P+K RII PR K P
Sbjct: 351 SAISLVEAHDYKLLGKIKRYTEEPLKPRIIEGLEPRTKAP 390
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 70/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF T E + ILL LG A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 333 TIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDILVATDVAAR 392
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V V+N+ +P + Y+HRVGRTARAGK G +VS + D
Sbjct: 393 GLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYD 438
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
++ A L LV +IF T +A+ + I+L LLG + LHG L+Q +RL SL +
Sbjct: 297 NKDAYLVYLVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQ 356
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +L+ATDVA+RGLDI V VIN+ +P + + YIHRVGRTARAG+ G +V++
Sbjct: 357 FKSGNRSILVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVT 416
Query: 260 EVDRKLVKQV 269
+ D +L++++
Sbjct: 417 QYDVELLQRI 426
>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 513
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE + L E D+ L A+
Sbjct: 358 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESD----LEENGLDKYLESAEAL 404
Query: 337 VSK 339
+ K
Sbjct: 405 LEK 407
>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|384517892|ref|YP_005705197.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699239|ref|YP_006537027.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|428766354|ref|YP_007152465.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|430358725|ref|ZP_19425485.1| helicase [Enterococcus faecalis OG1X]
gi|430367031|ref|ZP_19427744.1| helicase [Enterococcus faecalis M7]
gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|397335878|gb|AFO43550.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|427184527|emb|CCO71751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|429513550|gb|ELA03129.1| helicase [Enterococcus faecalis OG1X]
gi|429516845|gb|ELA06321.1| helicase [Enterococcus faecalis M7]
Length = 515
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 17/183 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+ + + VI+N
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYL-HVIENL--- 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R+ TP PP + A VE IE + L E D+ L A+
Sbjct: 358 TKKRM---------TPLRPPTEKEAFKGQLSAAVETIESD----LEENGLDKYLESAEAL 404
Query: 337 VSK 339
+ K
Sbjct: 405 LEK 407
>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
Length = 440
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L+ PV + +L
Sbjct: 164 DMGFAQDIEIISAETRWRNQTLLFSATLEGEAIHAFAERILKEPVKVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLVHLLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D DVL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRIDVLVATDVAARGLDIIDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D +L+ +V + P+K R+I P+ K P+
Sbjct: 344 RKGTAISLVEAHDHRLLGKVGRYLNEPLKPRVIDELRPKTKVPN 387
>gi|359299191|ref|ZP_09185030.1| ATP-dependent RNA helicase SrmB [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306790|ref|ZP_10825827.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
gi|400374139|gb|EJP27062.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
Length = 445
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRKDTH--- 138
+ +D E + A W K T+ +A++ L LL+ PV + R RK H
Sbjct: 171 FGQDAEKIAAETRWRKHTWLFSATLEGELLTDFAERLLQDPVQIEAEPSRRERKKIHQWY 230
Query: 139 -----LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
L+ K LLA L+ + ++FV + + E+ L G+++ L G++ Q
Sbjct: 231 YHADNLEHKTKLLARLIPSLEMEKVIVFVRRREDVRELSETLRKRGLRSTYLEGDMAQTQ 290
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +++ + K+ +VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G
Sbjct: 291 RNQAINRLKEGVVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKG 350
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++S+ D KL+ ++ + + +K R++ PR K P
Sbjct: 351 SAISLVEAHDYKLLGKIKRYTEEALKSRVVEGLEPRTKAP 390
>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 441
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + +A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVVHKTALLVHLLKQPDVQKSVIFVRKRERVHELAAWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P K PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIEELRPSTKVPS 387
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 69/100 (69%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ + D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVT 341
>gi|336326255|ref|YP_004606221.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336102237|gb|AEI10057.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 420
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LDR + LA ++ + TM+F TK++A + LG LG AG +HG++ Q R + L
Sbjct: 240 LDRMSALARILQTPGRGRTMVFTRTKKQAAFVASDLGELGFAAGAVHGDMRQHERQQCLE 299
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F++ DVL+ATDVAARG+D+ V VINY+ P Y+HR+GRT RAG G++V++
Sbjct: 300 AFREGTVDVLVATDVAARGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGMAVTLV 359
Query: 259 G--EVDR 263
G EVDR
Sbjct: 360 GWDEVDR 366
>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
Length = 502
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 69/100 (69%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK+ + D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVT 341
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
++KD HL A + A ++ +IF T +A + I+L LG A LHG L+Q +
Sbjct: 243 VQKDVHLIYLANILA------QNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSA 296
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L KFK VL+ATDVA+RGLDI V VINY +P + YIHRVGRTARAG+ G
Sbjct: 297 RLGALGKFKSGGRKVLVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSG 356
Query: 253 VSVSMAGEVDRKLVKQV 269
S+++ + D +L++++
Sbjct: 357 KSITLVTQYDVELIQRI 373
>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
[Helicobacter felis ATCC 49179]
Length = 469
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Query: 154 KDHT--MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT 211
++HT +IF+ KRE E+H L G K LHG++ Q +R ES++ FK + DVL+AT
Sbjct: 253 ENHTKSIIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVAT 312
Query: 212 DVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
DVA+RGLDI V V NY +P + E YIHR+GRT RAGK G+++++ ++ K ++++ K
Sbjct: 313 DVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQK 372
Query: 272 NAKNPVKHRIIP 283
+ ++ IP
Sbjct: 373 EIDSTIELYEIP 384
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 70/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF T E + ILL LG A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 333 TIIFSRTVNETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFKTQSRDILVATDVAAR 392
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V V+N+ +P + Y+HRVGRTARAGK G +VS + D
Sbjct: 393 GLDIPAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYD 438
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 81/113 (71%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++FV T + A ++ +LL LG +A +HG ++Q RL S KFK +E+++LIATDVA+R
Sbjct: 254 SIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIATDVASR 313
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
GLDI V V+N+ +P + + Y+HRVGRTARAGK G ++S+ + D ++ +++
Sbjct: 314 GLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKI 366
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 78/122 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TKR A E+ L G A +HG+ +Q R LR F+ D+L+ATDVAAR
Sbjct: 254 SIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDILVATDVAAR 313
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI+GV V NY +P +E YIHR+GRT RAGK G+++S+ ++ +L + V K ++
Sbjct: 314 GLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLEDRLFEIVKKKTRSD 373
Query: 277 VK 278
++
Sbjct: 374 IQ 375
>gi|358053682|ref|ZP_09147418.1| putative helicase [Staphylococcus simiae CCM 7213]
gi|357256869|gb|EHJ07190.1| putative helicase [Staphylococcus simiae CCM 7213]
Length = 507
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L G KA LHG++TQ RLE L+KFK+++ ++L+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI GV V N+ +P E Y HR+GRT RAGK G++V+ ++ ++Q+
Sbjct: 304 LDISGVSHVYNFDIPQDKESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 502
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 149 VCRTFKDHT----MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
+CR HT ++F TKR E+ L G +A +HG+L Q R LRKFK+
Sbjct: 231 LCRFIDIHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGL 290
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
DVL+ATDVAARGLDI GV V N+ +P E Y+HR+GRT RAGK G++++ A +R+
Sbjct: 291 VDVLVATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPRERE 350
Query: 265 LVKQVIKNAKNPVKHRIIP 283
VK + + +K + R +P
Sbjct: 351 HVKTIEQVSKKKMTRREVP 369
>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
Length = 754
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 148 LVCRTFKD-HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206
LV + D +IFV TKR + L +G G +HG +Q R ESLR FK E D
Sbjct: 585 LVLSQYPDTQAIIFVNTKRVVDHVSNLCFKMGYSVGAIHGGKSQDQREESLRGFKQGEYD 644
Query: 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
+L+ATDVA RG+D++G+ V+NY MP +E+Y HR+GRT RAG+ G +VS D ++
Sbjct: 645 ILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGRAGRQGTAVSFLTSEDTDVM 704
Query: 267 ---KQVIKNAKNPV 277
K+++ N+ N V
Sbjct: 705 YELKELLTNSGNHV 718
>gi|406603210|emb|CCH45247.1| ATP-dependent rRNA helicase RRP3 [Wickerhamomyces ciferrii]
Length = 488
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T + +L +LG A LHG LTQ RL +L +FK +T++L+ATDVAARG
Sbjct: 317 IIFTRTCAHSQRTALLSRILGFSAVPLHGQLTQSQRLSALNRFKSGKTNILVATDVAARG 376
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV--IKNAKN 275
LDI V VINY +P + YIHRVGRTARAG+ G SVS+ + D +L+ ++ I N K
Sbjct: 377 LDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELLIRIEAIINMKL 436
Query: 276 P 276
P
Sbjct: 437 P 437
>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 475
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 82/137 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LLA L + T++F TKR A + L GI+A +HG+ TQ R +L F
Sbjct: 232 KRPLLAELFADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E L+ATD+AARG+D+ V VINY +P+ E Y+HR+GRTAR GK G+++S +
Sbjct: 292 KAGEMRALVATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCAD 351
Query: 261 VDRKLVKQVIKNAKNPV 277
+R L+K + K + +
Sbjct: 352 DERNLLKDIQKATRQTI 368
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 8/131 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
I KDT+ +C F TMI F T E + ILL LG+ A LHG L+Q
Sbjct: 287 IHKDTYF-------IYLCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQS 339
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RL +L KF+ ++L+ATDVAARGLDI V VINY +P + YIHRVGRTARAGK
Sbjct: 340 ARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKS 399
Query: 252 GVSVSMAGEVD 262
G ++S+ + D
Sbjct: 400 GHALSIVTQYD 410
>gi|385785555|ref|YP_005816664.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
Length = 442
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 91/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + ++FV + HE+ L GI L G L Q R
Sbjct: 228 RADDIKHKTALLLHLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VL+ATD+AARG+DI V VIN+ MP + + Y+HR+GRT RAGK G+
Sbjct: 288 NEAIKRVVDGRVNVLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGI 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++I+ K P+K R+I P + PS
Sbjct: 348 AISLVEAHDNLLLGKIIRYVKEPIKARVIDELRPTTRAPS 387
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 9/156 (5%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ LL ++ + D ++F TK A+ + L GI + +HGN +Q +R ++L +F
Sbjct: 230 KSGLLTHIIKQQNMDQVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTKALAEF 289
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARGLDI + VINY +PH E Y+HR+GRT RAG G ++S+
Sbjct: 290 KSSAIQVLVATDIAARGLDIHQLPFVINYDLPHVAEDYVHRIGRTGRAGATGHAISLVTA 349
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPP 296
D KL+K + R+I PR++ F P
Sbjct: 350 EDIKLLKDI---------ERVIGEKIPRIEVSGFEP 376
>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 536
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ LG G K G +HG+L Q +R ++L
Sbjct: 283 LDKTELVAKVLQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQVAREKALG 342
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+D DVL+ATDVAARG+DI V VIN++ P + Y+HR+GRT RAGK G +V++
Sbjct: 343 KFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGRAGKTGTAVTL 401
>gi|333991566|ref|YP_004524180.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601]
gi|333487534|gb|AEF36926.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601]
Length = 508
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ LG G K G +HG+L Q +R ++L+
Sbjct: 249 LDKAELVARVLQARGRGATMIFTRTKRTAQKVADDLGERGFKVGAVHGDLNQVAREKALK 308
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI V V+NY+ P + Y+HR+GRT RAGK GV+V++
Sbjct: 309 AFRTGDIDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGKTGVAVTL 367
>gi|404252262|ref|ZP_10956230.1| DEAD/DEAH box helicase [Sphingomonas sp. PAMC 26621]
Length = 366
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 77/121 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+++ALL L+ + ++F TK A + LLG GI A +HGN +QP R +L +
Sbjct: 235 EKQALLTMLLADGAIERCLVFTRTKHGADRVVKLLGANGIPANAIHGNKSQPQRERALGE 294
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + VL+ATD+AARG+D+ GV V N+ +P+ E Y+HR+GRTARAG G+++S
Sbjct: 295 FKTGKVKVLVATDIAARGIDVSGVSHVFNFELPNVAEQYVHRIGRTARAGASGIAISFCA 354
Query: 260 E 260
E
Sbjct: 355 E 355
>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
gi|387870433|ref|YP_005801803.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
Length = 442
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 91/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + ++FV + HE+ L GI L G L Q R
Sbjct: 228 RADDIKHKTALLLHLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VL+ATD+AARG+DI V VIN+ MP + + Y+HR+GRT RAGK G+
Sbjct: 288 NEAIKRVVDGRVNVLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGI 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++I+ K P+K R+I P + PS
Sbjct: 348 AISLVEAHDNLLLGKIIRYVKEPIKARVIDELRPTTRAPS 387
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 154 KDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212
+DH++I F T + H + I+L LG++ LH + Q +R+ SL FK +L+ATD
Sbjct: 254 RDHSLIIFTSTCKYCHVLSIMLRNLGMQCATLHSLVKQKTRIASLAMFKSNHVRILVATD 313
Query: 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
+A+RGLDI V+ +IN+ +P S + YIHRVGRTARAG+GG+S++M + D KLV+ + K
Sbjct: 314 LASRGLDIPMVQMIINHNVPTSPKDYIHRVGRTARAGRGGMSITMVTQFDVKLVQAIEKT 373
Query: 273 AKNPVKHRIIP 283
+ +P
Sbjct: 374 INTKMTEYKVP 384
>gi|453055083|gb|EMF02530.1| putative ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 1029
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
++D+ ++A ++ +D MIF TKR A ++ L G AG +HG+L Q +R ++L
Sbjct: 211 NMDKPEMVARILQAEGRDRAMIFCRTKRTAADISEQLTRRGFAAGAVHGDLGQGAREQAL 270
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
R F++ + DVL+ TDVAARG+D+ V V+NY+ P + Y+HRVGRT RAGK G +V++
Sbjct: 271 RAFRNGKVDVLVCTDVAARGIDVDNVTHVVNYQTPEDEKTYLHRVGRTGRAGKSGTAVTL 330
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ A L L+ ++ ++F T +A + I+L LG A LHG L+Q RL +L K
Sbjct: 242 DKDAYLIYLINSLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGK 301
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK VL+ATDVA+RGLDI V VIN+ +P + YIHRVGRTARAG+ G S+++
Sbjct: 302 FKSGGRRVLVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVT 361
Query: 260 EVDRKLVKQV 269
+ D +LV+++
Sbjct: 362 QYDVELVQRI 371
>gi|420449759|ref|ZP_14948625.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
gi|393069076|gb|EJB69874.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
Length = 492
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E+YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTENYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048063|ref|ZP_09109641.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355529128|gb|EHG98582.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
Length = 448
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 10/186 (5%)
Query: 119 LLRPPVLLCLLCFR----IRKDTHLDRKALLAALVCRTFKDH----TMIFVPTKREAHEM 170
+LR PV + L + I + ++ +A +LV + F + +IF +K + +M
Sbjct: 201 ILRDPVEVKLAVSKPADKIVQSAYVCYEAQKVSLVKKLFAERPPHRVIIFASSKLKVKDM 260
Query: 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230
I LG G K G +H +L Q R E + KFK ++ DVL+ATD+ ARG+DI ++ VIN+
Sbjct: 261 AIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVARGIDIDDIQLVINFD 320
Query: 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLK 290
+PH E Y+HR+GRTARA G ++++ E D++ + + ++ R +P G +
Sbjct: 321 VPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRFASIEHFLETEIEKRPLPEGLG--E 378
Query: 291 TPSFPP 296
P++ P
Sbjct: 379 GPAYRP 384
>gi|300724118|ref|YP_003713435.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
gi|297630652|emb|CBJ91317.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
Length = 446
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
F R DT + ALL L+ ++ +++FV + E+ L GI+A L G + Q
Sbjct: 225 FYYRADTLEHKMALLCHLLQKSDVTKSIVFVRKRERVREVADWLSQAGIQAAFLEGEMVQ 284
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R +++++ D + +VL+ATDVA+RGLDI V V N+ +P + + Y+HR+GRTARAG+
Sbjct: 285 AKRTDAVKRLNDGKVNVLVATDVASRGLDIEDVSHVFNFDLPRTADVYLHRIGRTARAGR 344
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
G ++++ D L+ ++ + P+K R++ P+ K PS
Sbjct: 345 KGTAIALVESHDHPLLGKISRYLNEPMKIRVVDELRPQTKAPS 387
>gi|420451587|ref|ZP_14950439.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
gi|393070445|gb|EJB71235.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-6]
Length = 491
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R ++ L+ + +++F TK+EA E+H L K+ LHG++ Q R S+
Sbjct: 243 ERAEVIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMA 302
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + DVL+ATDVA+RGLDI GV V NY +P + E YIHR+GRT RAGK G+++++
Sbjct: 303 FKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVT 362
Query: 260 EVDRK 264
++ K
Sbjct: 363 PLEYK 367
>gi|294141997|ref|YP_003557975.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 430
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 89/149 (59%), Gaps = 6/149 (4%)
Query: 141 RKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
RKA LL+ L+ R ++F TK A + L L GIK G HG+ TQ +R +L +
Sbjct: 227 RKAELLSELIGRNNWQQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEE 286
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + V++ATDVAARGLDI+ + VIN +P+ E YIHRVGRT RAG G ++S
Sbjct: 287 FKSGKIRVMVATDVAARGLDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVC 346
Query: 260 EVDRKLVKQV--IKNAKNPVKHRIIPPGY 286
D ++++++ + K P RI+ PGY
Sbjct: 347 PSDEEMLEEIESLIELKLP---RIVLPGY 372
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T EA + ILL L A LHG L+Q RL +L KFK D+L+ATDVAAR
Sbjct: 353 TIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAAR 412
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI V VIN+ MP YIHRVGRTARAG+ G ++S+ + D +L ++ K A N
Sbjct: 413 GLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNG 472
Query: 277 VKHRIIPP 284
K + P
Sbjct: 473 RKLPLFQP 480
>gi|429081774|ref|ZP_19144874.1| ATP-dependent RNA helicase SrmB [Cronobacter condimenti 1330]
gi|426549666|emb|CCJ70915.1| ATP-dependent RNA helicase SrmB [Cronobacter condimenti 1330]
Length = 444
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 91/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ LL GI L G + Q R
Sbjct: 228 RADNIEHKTALLVHLLKQPEASRSIVFVRKRERVHELANLLREAGINNCYLEGEMVQVKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VLIATDVAARG+DI V VIN+ MP + + Y+HR+GRTARAG+ G
Sbjct: 288 NEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ +V + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPTTRAPS 387
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
IRKDT+L ++ ++F T E + ILL LG A LHG L+Q +
Sbjct: 275 IRKDTYLIH------IINEFAGKSCIVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSA 328
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L KF+ ++L+ATDVAARGLDI V V+NY +P + YIHRVGRTARAGK G
Sbjct: 329 RLGALNKFRGGTREILVATDVAARGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSG 388
Query: 253 VSVSMAGEVDRKLVKQV 269
V++S+ + D +L ++
Sbjct: 389 VAISLVTQYDLELFTRI 405
>gi|419958945|ref|ZP_14475003.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae GS1]
gi|388606248|gb|EIM35460.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae GS1]
Length = 442
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDHLLLQKIGRYVEEPLKARVIDGLRPTTRAPS 387
>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428786062|ref|ZP_19003545.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
gi|426275457|gb|EKV53192.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
Length = 442
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + ++FV + HE+ L GI + L G L Q R
Sbjct: 228 RADDIKHKTALLLHLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VL+ATD+AARG+DI V VIN+ MP + + Y+HR+GRT RAGK G+
Sbjct: 288 NEAIKRVVDGRVNVLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGI 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++I+ K P+K R+I P + P+
Sbjct: 348 AISLVEAHDNLLLGKIIRYVKEPIKARVIDQLRPTTRAPN 387
>gi|420485287|ref|ZP_14983905.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|420515778|ref|ZP_15014241.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
gi|420517482|ref|ZP_15015936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393103422|gb|EJC03985.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|393122981|gb|EJC23450.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393124077|gb|EJC24545.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
Length = 491
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 24/160 (15%)
Query: 109 SNASMTSFLFLL----RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTK 164
+N +T +++ R ++CLL DT +K++ +F TK
Sbjct: 228 TNTDITQRFYVINEHERAEAIMCLL------DTQAPKKSI--------------VFTRTK 267
Query: 165 REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVK 224
+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+RGLDI GV
Sbjct: 268 KEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVS 327
Query: 225 TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 328 HVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|425471042|ref|ZP_18849902.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
gi|389883157|emb|CCI36432.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
Length = 479
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P AE+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRAEVEAKRLAKLQNQLKEALSGE 395
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G A +HG+L Q +R ++LR
Sbjct: 249 LDKPELIAKVLQAEGRGLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALR 308
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + D+L+ATDVAARG+D+ GV VINY+MP + Y+HR+GRT RAG+ GV++++
Sbjct: 309 AFRSGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITL 367
>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 455
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 3/158 (1%)
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
TH +R LL L+C T ++F TKR+A + L G KA +HG++TQ R +
Sbjct: 230 THKNR--LLDHLLCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRT 287
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L + +L+ATDVAARG+DI + VIN+ +P E Y+HR+GRT RAG G++VS
Sbjct: 288 LTGLRQGRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVS 347
Query: 257 MAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
A D +K++ + N + +++P PR K P F
Sbjct: 348 FASGKDGIHLKRIERFTGNHFEFQVVPGMEPRTK-PRF 384
>gi|420424845|ref|ZP_14923909.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
gi|393043432|gb|EJB44436.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R + L+ + +++F TK+EA E+H L K+ LHG++ Q R S+
Sbjct: 243 ERAEAIMRLLDTQVPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMA 302
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + DVL+ATDVA+RGLDI GV V NY +P + E YIHR+GRT RAGK G+++++
Sbjct: 303 FKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVT 362
Query: 260 EVDRK 264
++ K
Sbjct: 363 PLEYK 367
>gi|420411610|ref|ZP_14910742.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
gi|393030399|gb|EJB31478.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
Length = 492
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F+ TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|410479720|ref|YP_006767357.1| DEAD/DEAH box helicase [Leptospirillum ferriphilum ML-04]
gi|406774972|gb|AFS54397.1| DEAD/DEAH box helicase domain protein [Leptospirillum ferriphilum
ML-04]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 76/122 (62%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR A ++ I L G + LHG+ +QP R L +F+ + VL+ATDVAARG
Sbjct: 249 IIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARG 308
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI G+ VINY +P + E Y+HR+GRT RAG+ G ++S DR +V+ + A P+
Sbjct: 309 LDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIETMAGKPI 368
Query: 278 KH 279
H
Sbjct: 369 PH 370
>gi|401837326|gb|EJT41269.1| DBP1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 619
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANIADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +I+
Sbjct: 516 NSNNQNIVKGLIE 528
>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 76/122 (62%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR A ++ I L G + LHG+ +QP R L +F+ + VL+ATDVAARG
Sbjct: 249 IIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARG 308
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI G+ VINY +P + E Y+HR+GRT RAG+ G ++S DR +V+ + A P+
Sbjct: 309 LDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIETMAGKPI 368
Query: 278 KH 279
H
Sbjct: 369 PH 370
>gi|383820552|ref|ZP_09975808.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
gi|383334942|gb|EID13375.1| DEAD/DEAH box helicase [Mycobacterium phlei RIVM601174]
Length = 468
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 205 LDKVEMISRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALK 264
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT RAGK GV+V++
Sbjct: 265 AFRTGEIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTL 323
>gi|340506709|gb|EGR32792.1| RNA helicase, putative [Ichthyophthirius multifiliis]
Length = 704
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
L+ L T KD ++F T++ ++ LL G K +HG+ TQ R + KFK+
Sbjct: 364 LIKQLDQLTQKDKVLVFAQTRKGCEILNRLLESEGFKCMAIHGDKTQKDRDYVMHKFKNG 423
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG-EVD 262
+ +LIATDVA+RGLD++ V V N+ P +E YIHR+GRT RAG G++VS +VD
Sbjct: 424 DNKILIATDVASRGLDVKDVSHVFNFDFPKVMEDYIHRIGRTGRAGAYGIAVSFLDPDVD 483
Query: 263 RKLVKQVIKN 272
RK+ K+++KN
Sbjct: 484 RKIAKELLKN 493
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T EA + ILL L A LHG L+Q RL +L KFK D+L+ATDVAAR
Sbjct: 353 TIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAAR 412
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI V VIN+ MP YIHRVGRTARAG+ G ++S+ + D +L ++ K A N
Sbjct: 413 GLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNG 472
Query: 277 VKHRIIPP 284
K + P
Sbjct: 473 RKLPLFQP 480
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T EA + ILL L A LHG L+Q RL +L KFK D+L+ATDVAAR
Sbjct: 353 TIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAAR 412
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI V VIN+ MP YIHRVGRTARAG+ G ++S+ + D +L ++ K A N
Sbjct: 413 GLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNG 472
Query: 277 VKHRIIPP 284
K + P
Sbjct: 473 RKLPLFQP 480
>gi|420497178|ref|ZP_14995739.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
gi|393114875|gb|EJC15390.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
Length = 501
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora
B]
Length = 447
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
++KD HL L ++ +IF T +A + I+L LG A LHG L+Q +
Sbjct: 237 VQKDVHL------IYLANSLAQNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSA 290
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L KFK VL+ATDVA+RGLDI V VINY +P + YIHRVGRTARAG+ G
Sbjct: 291 RLGALGKFKSGGRKVLVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSG 350
Query: 253 VSVSMAGEVDRKLVKQV 269
SV++ + D +LV+++
Sbjct: 351 KSVTLVTQYDVELVQRI 367
>gi|365758019|gb|EHM99884.1| Dbp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 619
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANIADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +I+
Sbjct: 516 NSNNQNIVKGLIE 528
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T EA + ILL L A LHG L+Q RL +L KFK D+L+ATDVAAR
Sbjct: 377 TIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAAR 436
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI V VIN+ MP YIHRVGRTARAG+ G ++S+ + D +L ++ K A N
Sbjct: 437 GLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALNG 496
Query: 277 VKHRIIPP 284
K + P
Sbjct: 497 RKLPLFQP 504
>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
dendrobatidis JAM81]
Length = 445
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 72/105 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T ++ ++L LG +A LHG LTQP RL +L KFK ++LIATDVA+RG
Sbjct: 254 IVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVASRG 313
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI GV VINY +P S + YIHRVGRTARAG+ G S+++ + D
Sbjct: 314 LDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYD 358
>gi|260577895|ref|ZP_05845826.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258603989|gb|EEW17235.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 458
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LDR + LA ++ + +++F TKR+A + L LG + G +HG++ Q R ESL
Sbjct: 271 LDRLSALARILQSPGRGRSIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLD 330
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+F+ E DV++ATDVAARG+DI V VINY++P Y+HR+GRT RAG G +VS+
Sbjct: 331 EFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLI 390
Query: 259 G 259
G
Sbjct: 391 G 391
>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
Length = 445
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + KD
Sbjct: 242 LLARLISTMKMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HRVGRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + +K R+I PR K P
Sbjct: 362 KLLGKIKRYTEELLKARVIEGLEPRTKAP 390
>gi|384895629|ref|YP_005769618.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
Length = 492
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|377572295|ref|ZP_09801385.1| putative ATP-dependent RNA helicase [Gordonia terrae NBRC 100016]
gi|377530391|dbj|GAB46550.1| putative ATP-dependent RNA helicase [Gordonia terrae NBRC 100016]
Length = 539
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 261 LDKAELVARILQADGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALK 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 321 RFRDGTIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 379
>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
Length = 551
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RI +D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ
Sbjct: 323 RILYVDDMDKKSXLLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQA 382
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R +L FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG
Sbjct: 383 ERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNT 442
Query: 252 GVSVSMAGEVDRKLVKQVIK 271
GV+ S ++ +VK +++
Sbjct: 443 GVATSFFNSNNQNIVKGLME 462
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 112/208 (53%), Gaps = 28/208 (13%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
+L+ L+ D ++F TKR E+ L L G A +HG+L+Q RL LRKFKD
Sbjct: 230 VLSRLLDVQSPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDG 289
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+ DVL+ATDVAARGLDI GV V NY +P E Y+HR+GRT RAG+ G++++ +
Sbjct: 290 KIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREM 349
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+K V + K R++P ++ P++ EA EG Q+ +T
Sbjct: 350 GYLKTV----EQTTKKRMLP-----MRPPTWD---------------EAFEG--QQRVTM 383
Query: 324 EKHDRLLNKA--DEQVSKAEKMLKEKKP 349
E+ + + DE +S A+++L E P
Sbjct: 384 ERIGETIKEGNIDEYMSVAKELLAEYDP 411
>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 493
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 148 LVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
++CR D +++F TKR E+ L G +A LHG+L Q R LRKFK+
Sbjct: 231 VLCRLIDLETPDLSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEG 290
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
DVL+ATDVAARGLDI GV V N+ +P E Y+HR+GRT RAG+ G+++++A + +R
Sbjct: 291 LIDVLVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPER 350
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+ VK + +K + R P P E EA+EG+ Q L E
Sbjct: 351 EHVKLIESVSKRRMTQR---------------PKPTYE---------EALEGQKQSTLNE 386
Query: 324 EKHDRLLNKADEQVSKAEKMLKE 346
+ + D A+++L+E
Sbjct: 387 LRELAAKGEQDSYRVAAKELLQE 409
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 16/185 (8%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T + +L +LG A LHG L+Q RL SL KFK ++++L+ATDVAARG
Sbjct: 332 IVFTRTCAHSQRTSLLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKSNILVATDVAARG 391
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI V VINY +P + YIHRVGRTARAGK G S+S+ + D +L + I+N
Sbjct: 392 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLR-IENVLGK- 449
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQV 337
K P P PP + +D V+ E + T+E HD+ ++ + V
Sbjct: 450 ------------KLPKDPSPP-RQALDALHVHVDKATAEAIR-QTKEFHDKRRKRSRDDV 495
Query: 338 SKAEK 342
+ E+
Sbjct: 496 DREER 500
>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
gi|365762783|gb|EHN04316.1| Dbp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 617
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL ++ T + ++IF TK A + LG GI A +HGN +Q +R ++L+
Sbjct: 228 DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKD 287
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD VLIATD+AARG+DI + VINY +P+ E Y+HR+GRT RAG G ++S G
Sbjct: 288 FKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCG 347
Query: 260 EVDRKLVKQVIK 271
+RK +K + K
Sbjct: 348 TEERKDLKNIQK 359
>gi|145351197|ref|XP_001419971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580204|gb|ABO98264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 575
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R + ++ R ++FV KR + L LG +HG +Q R ESLR
Sbjct: 399 ERDSKFELVLSRHPNTQAIVFVNAKRSVDAVANLCYRLGYSCASIHGGKSQDQREESLRG 458
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + D+L+ATDVA RG+D++G+ V+NY +PH++E+Y HR+GRT RAG+ G +VS
Sbjct: 459 FKAGDYDILVATDVAGRGIDVKGIDLVVNYELPHTIENYTHRIGRTGRAGRKGTAVSFLT 518
Query: 260 EVDRKLV---KQVIKNAKNPV 277
DR ++ K+++ +KN V
Sbjct: 519 SDDRDIMYELKELLIESKNHV 539
>gi|425790600|ref|YP_007018517.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
gi|425628915|gb|AFX89455.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik86]
Length = 492
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F+ TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
gi|1706311|sp|P24784.2|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
box protein 1; AltName: Full=Helicase CA1
gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
cerevisiae]
gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
gi|392295891|gb|EIW06994.1| Dbp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 617
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
+ KDT+L +C F T+I F T E + ILL LG+ A LHG L+Q
Sbjct: 290 MHKDTYL-------IYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQS 342
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RL +L KF+ + D+L+ATDVAARGLDI V V+N+ +P + Y+HRVGRTARAGK
Sbjct: 343 ARLGALNKFRAKSRDILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKS 402
Query: 252 GVSVSMAGEVD 262
G ++S + D
Sbjct: 403 GHAISFVTQYD 413
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 76/122 (62%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR A ++ I L G + LHG+ +QP R L +F+ + VL+ATDVAARG
Sbjct: 249 IIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARG 308
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI G+ VINY +P + E Y+HR+GRT RAG+ G ++S DR +V+ + A P+
Sbjct: 309 LDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIETMAGKPI 368
Query: 278 KH 279
H
Sbjct: 369 PH 370
>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
Length = 617
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 13/157 (8%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G A +HG+L+Q RL L+KFK+ + DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELTRALTLRGYSAEGIHGDLSQMKRLNVLKKFKEGKVDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V NY +P E Y+HR+GRT RAGK G++++ + +++V + K +
Sbjct: 304 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGIAITFVSPREMGYLREVERTTKKRM 363
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314
TP PP ++ + +A V IE
Sbjct: 364 -------------TPMQPPTWTEALIGQQKAAVNEIE 387
>gi|420443256|ref|ZP_14942184.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
gi|393060763|gb|EJB61632.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|419701416|ref|ZP_14229017.1| ATP-dependent RNA helicase SrmB [Escherichia coli SCI-07]
gi|380347617|gb|EIA35904.1| ATP-dependent RNA helicase SrmB [Escherichia coli SCI-07]
Length = 444
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MPHS + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPHSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 387
>gi|420483531|ref|ZP_14982161.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3]
gi|420513885|ref|ZP_15012358.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
gi|393102756|gb|EJC03320.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3]
gi|393158348|gb|EJC58608.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-3b]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F+ TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|442314863|ref|YP_007356166.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|441483786|gb|AGC40472.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 376
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL ++ T + ++IF TK A + LG GI A +HGN +Q +R ++L+
Sbjct: 233 DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKD 292
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD VLIATD+AARG+DI + VINY +P+ E Y+HR+GRT RAG G ++S G
Sbjct: 293 FKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCG 352
Query: 260 EVDRKLVKQVIK 271
+RK +K + K
Sbjct: 353 TEERKDLKNIQK 364
>gi|420459761|ref|ZP_14958560.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
gi|393076863|gb|EJB77612.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
Length = 492
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|349581699|dbj|GAA26856.1| K7_Dbp1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 617
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|384170944|ref|YP_005552321.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
gi|345470554|dbj|BAK72004.1| DEAD-box ATP dependent DNA helicase [Arcobacter sp. L]
Length = 511
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 81/127 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IF TK+E + L G A LHG++ Q R E++R FK + ++LIATDVAAR
Sbjct: 239 SIIFCRTKKEVDRLSTFLVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAAR 298
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLD+ V V NY +P E Y+HR+GRT RAGK GV++S+ + ++++++ KN
Sbjct: 299 GLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMLQKIEKNIGTK 358
Query: 277 VKHRIIP 283
++ +I+P
Sbjct: 359 LEAKIVP 365
>gi|420490274|ref|ZP_14988860.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
gi|393109617|gb|EJC10148.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420498815|ref|ZP_14997372.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
gi|393152794|gb|EJC53090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420453086|ref|ZP_14951925.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
gi|393070694|gb|EJB71483.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420429945|ref|ZP_14928975.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
gi|393048564|gb|EJB49531.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420524110|ref|ZP_15022520.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
gi|393133269|gb|EJC33686.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420471737|ref|ZP_14970433.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|420476932|ref|ZP_14975594.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|420478711|ref|ZP_14977363.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
gi|393091092|gb|EJB91724.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|393094537|gb|EJB95145.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|393096266|gb|EJB96864.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420461541|ref|ZP_14960331.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
gi|393081521|gb|EJB82241.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420428271|ref|ZP_14927306.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
gi|393045930|gb|EJB46910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
Length = 491
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNAESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
Length = 618
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 397 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 456
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 457 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 516
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 517 NSNNQNIVKGLME 529
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 83/130 (63%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+++ LL L+ R+ ++F TK A+++ L + I A LHGN +Q R +L++
Sbjct: 229 NKRELLIHLITRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQE 288
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK+ E +L+ATDVAARGLDI G+ V+NY MP E Y+HR+GRT RAG GV+VS+
Sbjct: 289 FKNGEIRILVATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVS 348
Query: 260 EVDRKLVKQV 269
+ ++ +K V
Sbjct: 349 KEEKVFLKSV 358
>gi|421711256|ref|ZP_16150599.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
gi|407212405|gb|EKE82267.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420454799|ref|ZP_14953629.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
gi|393073149|gb|EJB73923.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|384890631|ref|YP_005764764.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420435575|ref|ZP_14934574.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
gi|393051434|gb|EJB52385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385223306|ref|YP_005783232.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|385231153|ref|YP_005791072.1| cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|420439937|ref|ZP_14938897.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|420463244|ref|ZP_14962022.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|420475132|ref|ZP_14973803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|393057963|gb|EJB58859.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|393080772|gb|EJB81497.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|393093239|gb|EJB93856.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA+++ R ++FV TK ++ + L G+K +HGN +Q +R +L FK+
Sbjct: 236 LLASVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNG 295
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
VL+ATDVAARGLD+ GV VINY +P E Y+HR+GRT RAGK G+++S + R
Sbjct: 296 HIQVLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQR 355
Query: 264 KLVKQV--IKNAKNPVKHRIIPPGYPRL 289
L++ V I K PV++ +P G P L
Sbjct: 356 GLLRDVQRILGKKIPVENE-MPDGIPGL 382
>gi|420481826|ref|ZP_14980463.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
gi|393099060|gb|EJB99641.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
Length = 492
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
Length = 617
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
35316]
gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
35316]
Length = 442
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKIELLKQLLKQEDATRTIVFVRKRERVHELAEILRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDHLLLQKIGRYVDEPLKSRVIDGLRPTTRAPS 387
>gi|420406445|ref|ZP_14905615.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
gi|393023282|gb|EJB24396.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
Length = 492
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385218535|ref|YP_005780010.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
Length = 504
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 90/144 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R+ + L+ +IF K+EA + L G KAG LHG++ Q R +S++
Sbjct: 235 EREDAIVRLIDSEMPTKAIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKA 294
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD ++L+ATD+AARGLDI GV V N+ +P + E Y+HR+GRT RAGK GV++++A
Sbjct: 295 FKDSSVNILVATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLAT 354
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIP 283
++ K ++++ +N K ++ IP
Sbjct: 355 PLEFKELRRIKENTKAKIELYEIP 378
>gi|420473658|ref|ZP_14972336.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
gi|393090786|gb|EJB91419.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420448278|ref|ZP_14947158.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
gi|393065632|gb|EJB66460.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420441616|ref|ZP_14940561.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
gi|393059745|gb|EJB60620.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420438295|ref|ZP_14937269.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|420519043|ref|ZP_15017487.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
gi|393055895|gb|EJB56807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|393128135|gb|EJC28579.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
Length = 491
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420512248|ref|ZP_15010731.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
gi|393157311|gb|EJC57572.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium gilvum Spyr1]
gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 505
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 82/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TMIF TKR A ++ LG G + G +HG+L Q +R ++L+
Sbjct: 246 LDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALK 305
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F++ + DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK G++V++
Sbjct: 306 GFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTL 364
>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 505
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 82/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TMIF TKR A ++ LG G + G +HG+L Q +R ++L+
Sbjct: 246 LDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALK 305
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F++ + DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK G++V++
Sbjct: 306 GFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTL 364
>gi|421717811|ref|ZP_16157112.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
gi|407222603|gb|EKE92401.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
Length = 452
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
RI +D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ
Sbjct: 224 RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQA 283
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
R +L FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG
Sbjct: 284 ERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNT 343
Query: 252 GVSVSMAGEVDRKLVKQVIK 271
GV+ S ++ +VK +++
Sbjct: 344 GVATSFFNSNNQNIVKGLME 363
>gi|420530777|ref|ZP_15029152.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
gi|393138803|gb|EJC39184.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 449
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
+KD HL L + +IF T +A + I+L +LG A LHG L+Q +R
Sbjct: 239 QKDVHL------IYLANSLASNSIIIFTRTVHDAQRLSIMLRILGFPAVPLHGQLSQSAR 292
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KFK VL+ATDVA+RGLDI V VIN+ +P+ + YIHRVGRTARAG+ G
Sbjct: 293 LGALAKFKSGGRKVLVATDVASRGLDIPSVDIVINFDIPNHSKDYIHRVGRTARAGRSGK 352
Query: 254 SVSMAGEVDRKLVKQV 269
S+++ + D +L++++
Sbjct: 353 SITLVTQYDVELIQRI 368
>gi|385248761|ref|YP_005776980.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|421719303|ref|ZP_16158589.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
gi|407222474|gb|EKE92273.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420503814|ref|ZP_15002344.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
gi|393155203|gb|EJC55480.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
Length = 489
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 258 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 317
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 318 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 365
>gi|207340598|gb|EDZ68898.1| YPL119Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 303
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 82 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 141
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 142 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 201
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 202 NSNNQNIVKGLME 214
>gi|160380607|sp|A6ZWD3.1|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
box protein 1; AltName: Full=Helicase CA1
gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
Length = 617
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ K T+IFV TKR A ++ L + KA +HG+ TQ R +L
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALS 455
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK D+L+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG GV+ S
Sbjct: 456 AFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFF 515
Query: 259 GEVDRKLVKQVIK 271
++ +VK +++
Sbjct: 516 NSNNQNIVKGLME 528
>gi|420488482|ref|ZP_14987082.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|420522411|ref|ZP_15020835.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
gi|393109053|gb|EJC09585.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|393129368|gb|EJC29802.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420458128|ref|ZP_14956938.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
gi|393075649|gb|EJB76403.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420426456|ref|ZP_14925510.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
gi|393044095|gb|EJB45090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-9]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 67/100 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVT 341
>gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 445
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 141 RKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
RKA LL+ L+ R ++FV T+ A +H L L G+K HG TQ +R +L +
Sbjct: 237 RKAELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEE 296
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + V++ATDVAARGLDI + VIN +P + E Y+HRVGRT RAG G ++S
Sbjct: 297 FKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVS 356
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
DR++++++ +I PR+ P +
Sbjct: 357 PQDREMMQEI---------EVLIAQTLPRITMPGY 382
>gi|408792586|ref|ZP_11204196.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463996|gb|EKJ87721.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 471
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 8/136 (5%)
Query: 140 DRKALLAALVCRTFKDH----TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
D+K LL L FKD T+IF TK A+++ LL GIK +HGN +Q +R +
Sbjct: 235 DKKNLLLHL----FKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQK 290
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
+L F+ + L+ATD+AARG+DI + VINY +P+ E Y+HR+GRTARAGK G+++
Sbjct: 291 ALEDFRSGKNRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAI 350
Query: 256 SMAGEVDRKLVKQVIK 271
++A +R L+K + K
Sbjct: 351 AIAEADERSLIKDIEK 366
>gi|420423148|ref|ZP_14922221.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
gi|393042428|gb|EJB43437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|418047503|ref|ZP_12685591.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353193173|gb|EHB58677.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 503
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 81/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ LG G K G +HG+L Q +R ++L+
Sbjct: 246 LDKVEMVSRILQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQIAREKALK 305
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI + VINY++P + Y+HR+GRT RAGK G+++++
Sbjct: 306 AFRTGDVDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAITL 364
>gi|408419252|ref|YP_006760666.1| ATP-dependent RNA helicase RhlE [Desulfobacula toluolica Tol2]
gi|405106465|emb|CCK79962.1| RhlE: predicted ATP-dependent RNA helicase [Desulfobacula toluolica
Tol2]
Length = 422
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
+P + + + F++ K+ + +LL ++ + T++F TK +A + ++L G K
Sbjct: 209 QPVLAISHVLFQVAKE---QKTSLLKTIIQKEEMKSTLVFTRTKHKAKSLALILQKAGYK 265
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A + GNL+Q R E+L FK+ +L+ATD+AARG+D++G+ VINY +P + E Y H
Sbjct: 266 AASIQGNLSQVKRQEALNGFKNGTFKILVATDIAARGIDVKGISHVINYDVPDTAETYTH 325
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283
R GRT RA + G + AG+ DRK++ + +N + R P
Sbjct: 326 RTGRTGRAERTGQAFIFAGQEDRKIISLIERNLGKKMSCRETP 368
>gi|421709650|ref|ZP_16149009.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|421722902|ref|ZP_16162159.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
gi|407211095|gb|EKE80964.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|407225270|gb|EKE95041.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|387888310|ref|YP_006318608.1| ATP-dependent RNA helicase SrmB [Escherichia blattae DSM 4481]
gi|414593965|ref|ZP_11443606.1| ATP-dependent RNA helicase SrmB [Escherichia blattae NBRC 105725]
gi|386923143|gb|AFJ46097.1| ATP-dependent RNA helicase SrmB [Escherichia blattae DSM 4481]
gi|403195222|dbj|GAB81258.1| ATP-dependent RNA helicase SrmB [Escherichia blattae NBRC 105725]
Length = 440
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A + LL PV + +
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGSAIIDFSQRLLEDPVQVSATPSTRERKKIH 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R DT + ALL ++ + +++FV + HE+ L GI+ L G +
Sbjct: 224 QWYYRADTTEHKTALLVHMLKQPEMSRSIVFVRKRERVHEVAQWLREAGIECCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAIKRLTDGRVNVLVATDVAARGIDIADVSHVFNFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L++++ + + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDYLLLEKIGRYIQEPLKARVIDELRPTTRAPS 387
>gi|407452329|ref|YP_006724054.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313313|gb|AFR36154.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 371
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 81/130 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL ++ T + ++IF TK A + LG GI A +HGN +Q +R ++L+
Sbjct: 228 DKTNLLINILKDTSELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKD 287
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FKD VLIATD+AARG+DI + VINY +P+ E Y+HR+GRT RAG G ++S G
Sbjct: 288 FKDNRISVLIATDIAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCG 347
Query: 260 EVDRKLVKQV 269
+RK +K +
Sbjct: 348 AEERKDLKNI 357
>gi|345570196|gb|EGX53021.1| hypothetical protein AOL_s00007g357 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 140 DRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D+ L LV F TMI F T + + +LL LLG A LHG L+Q RL +L
Sbjct: 328 DKDTYLVYLVAEKFAGKTMIIFTRTIMDTQRISVLLRLLGCSAIPLHGQLSQTGRLGALN 387
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
KFK ++L+ATDVAARGLDI V VINY + + YIHRVGRTARAG+ GV V++
Sbjct: 388 KFKAGARNILVATDVAARGLDIPTVDYVINYDIAGDSKTYIHRVGRTARAGRSGVCVNLV 447
Query: 259 GEVD 262
+ D
Sbjct: 448 TQYD 451
>gi|384887274|ref|YP_005761785.1| DEAD/DEAH box helicase [Helicobacter pylori 52]
gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|334125213|ref|ZP_08499205.1| ATP-dependent RNA helicase DeaD [Enterobacter hormaechei ATCC
49162]
gi|333387378|gb|EGK58576.1| ATP-dependent RNA helicase DeaD [Enterobacter hormaechei ATCC
49162]
Length = 442
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDHLLLQKIGRYVDEPLKARVIDGLRPTTRAPS 387
>gi|15644875|ref|NP_207045.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|410023485|ref|YP_006892738.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|410501253|ref|YP_006935780.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
gi|410681772|ref|YP_006934174.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|419416982|ref|ZP_13957482.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
pylori 26695]
gi|384374141|gb|EIE29566.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|409893413|gb|AFV41471.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|409895142|gb|AFV43064.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|409896804|gb|AFV44658.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420527527|ref|ZP_15025921.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|420529549|ref|ZP_15027936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
gi|393134653|gb|EJC35062.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|393137318|gb|EJC37704.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420480288|ref|ZP_14978932.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|420510736|ref|ZP_15009225.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
gi|393098201|gb|EJB98793.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|393121244|gb|EJC21727.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420431829|ref|ZP_14930848.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
gi|393049422|gb|EJB50388.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|427725149|ref|YP_007072426.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427356869|gb|AFY39592.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 494
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 82/129 (63%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TKR A E+ L G A E HG+L+Q R + +R+FKD +++ATD+A
Sbjct: 243 ESAIIFVRTKRTASELTNELLEAGQSADEYHGDLSQAQREKLVRRFKDGRIKMIVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + V+N+ +P + E YIHR+GRT RAGK G ++++ DR+L++Q+ + K
Sbjct: 303 ARGLDVANLSHVVNFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVK 362
Query: 275 NPVKHRIIP 283
+ IP
Sbjct: 363 QSLTTCKIP 371
>gi|384896986|ref|YP_005772414.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420501086|ref|ZP_14999630.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
gi|393149892|gb|EJC50200.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 83/132 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ +L L ++ +IF T R+A + I+L LG A LHG L+Q RL +L K
Sbjct: 244 DKVVMLIYLANSLAQNSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGK 303
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +L+ATDVA+RGLDI V VINY +P + YIHRVGRTARAG+ G ++++
Sbjct: 304 FKSGGRKILVATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVT 363
Query: 260 EVDRKLVKQVIK 271
+ D +L++++ K
Sbjct: 364 QYDVELLQRIEK 375
>gi|384899413|ref|YP_005774793.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 517
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 70/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF T E + +LL LG A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 331 TIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAAR 390
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V ++N+ +P + Y+HRVGRTARAGK G +VS + D
Sbjct: 391 GLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYD 436
>gi|421716313|ref|ZP_16155624.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
gi|407220576|gb|EKE90382.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420413206|ref|ZP_14912330.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
gi|393029193|gb|EJB30274.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420403406|ref|ZP_14902592.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
gi|393020572|gb|EJB21711.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|374612243|ref|ZP_09685023.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373547956|gb|EHP74664.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 483
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TM+F TKR A ++ L G K G +HG+L Q +R +SL+
Sbjct: 241 LDKVEMVARILQAEGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKSLK 300
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI + VINY++P + Y+HR+GRT RAGK G++V++
Sbjct: 301 AFRTGDVDVLVATDVAARGIDIDDITHVINYQIPEDDQAYVHRIGRTGRAGKTGIAVTL 359
>gi|420464946|ref|ZP_14963713.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
gi|393082433|gb|EJB83149.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-6]
Length = 491
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTHTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|421713416|ref|ZP_16152747.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
gi|407216782|gb|EKE86619.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R32b]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|307106343|gb|EFN54589.1| hypothetical protein CHLNCDRAFT_135424, partial [Chlorella
variabilis]
Length = 323
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 16/162 (9%)
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
E L+AT++AARGLDI GV+TV+NY P L Y+HRVGRTARAG G +V+ + DR
Sbjct: 2 EVAFLLATELAARGLDILGVETVVNYDAPAQLSSYLHRVGRTARAGAQGRAVTFIEDDDR 61
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
L+K+VIK R A V ++AK+E +E +V+ I+ E
Sbjct: 62 PLLKEVIK----------------RTGVQMQQRQMQAAAVAGWQAKIEGLEPQVEWIVAE 105
Query: 324 EKHDRLLNKADEQVSKAEKMLKEKKPLHENPPREWFQTKKER 365
E+ +R L KA+ + KA +L+ + PPR WFQT+K++
Sbjct: 106 EREERALRKAEMEAQKASNLLEHHDEIMARPPRTWFQTEKQK 147
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F+ T + + ILL LG A LHG L+Q +RL +L KF+ D+L+ATDVAAR
Sbjct: 304 TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAAR 363
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V VINY +P + YIHRVGRTARAGK G ++S+ + D
Sbjct: 364 GLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYD 409
>gi|444375384|ref|ZP_21174677.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
gi|443620082|gb|ELT80535.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420436804|ref|ZP_14935796.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
gi|393054544|gb|EJB55472.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-28]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420401386|ref|ZP_14900582.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
gi|393020008|gb|EJB21148.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385217014|ref|YP_005778490.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|384893855|ref|YP_005767904.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420405153|ref|ZP_14904333.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
gi|393025023|gb|EJB26133.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385224943|ref|YP_005784868.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420493609|ref|ZP_14992180.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
gi|393112865|gb|EJC13385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|386752257|ref|YP_006225476.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
gi|384558515|gb|AFH98982.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|386750678|ref|YP_006223898.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
gi|384556936|gb|AFH97404.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
Length = 492
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|357059925|ref|ZP_09120700.1| hypothetical protein HMPREF9332_00257 [Alloprevotella rava F0323]
gi|355377113|gb|EHG24347.1| hypothetical protein HMPREF9332_00257 [Alloprevotella rava F0323]
Length = 421
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ ++ L + + +IF +K++ E+HILL +H +L Q R E + K
Sbjct: 236 DKNTIIRHLFKQCKPERVIIFCSSKQKVKELHILLKRAHFNCEAMHSDLLQQQRDEVMLK 295
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK TD+L+ATD+ ARG+DI ++ VINY P E Y+HR+GRTARAG+ G++V++ G
Sbjct: 296 FKSGHTDILVATDIVARGIDINDIQMVINYDAPRDAEDYVHRIGRTARAGRNGIAVTLVG 355
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
E D + + K K + +P G LK P
Sbjct: 356 EKDLFALHNIEKLLKEKLARTPLPEG---LKDP 385
>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 455
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 76/117 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IF TK + LG GI A +HGN +QP R +L +FK +T +L+ATDVA
Sbjct: 251 ERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKTPILVATDVA 310
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
ARG+DI GV V+NY +P+ E Y+HR+GRTARAG+ GV+++ E +R +K + K
Sbjct: 311 ARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERDYLKDIRK 367
>gi|425788880|ref|YP_007016800.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
gi|425627195|gb|AFX90663.1| ATP-dependent RNA helicase [Helicobacter pylori Aklavik117]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420414758|ref|ZP_14913875.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
gi|393034502|gb|EJB35559.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4053]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385228012|ref|YP_005787945.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
gi|344334450|gb|AEN14894.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420506131|ref|ZP_15004646.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
gi|393115636|gb|EJC16146.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-74]
Length = 491
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385215525|ref|YP_005775481.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 70/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF T E + +LL LG A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 330 TIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAAR 389
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V ++N+ +P + Y+HRVGRTARAGK G +VS + D
Sbjct: 390 GLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYD 435
>gi|384892304|ref|YP_005766397.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420466568|ref|ZP_14965325.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
gi|393084966|gb|EJB85654.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420486880|ref|ZP_14985488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|420520767|ref|ZP_15019198.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
gi|393104433|gb|EJC04990.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|393127354|gb|EJC27799.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420419835|ref|ZP_14918923.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
gi|393039201|gb|EJB40233.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
Length = 491
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420492318|ref|ZP_14990892.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|420526342|ref|ZP_15024743.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
gi|393106757|gb|EJC07300.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-15]
gi|393131647|gb|EJC32070.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-15b]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|386753803|ref|YP_006227021.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
gi|384560061|gb|AFI00528.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|365971678|ref|YP_004953239.1| ATP-dependent RNA helicase srmB [Enterobacter cloacae EcWSU1]
gi|365750591|gb|AEW74818.1| ATP-dependent RNA helicase srmB [Enterobacter cloacae EcWSU1]
Length = 442
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQDDATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDYLLLQKIGRYVDEPLKARVIDELRPTTRAPS 387
>gi|385229561|ref|YP_005789477.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
gi|344335999|gb|AEN17960.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420399731|ref|ZP_14898935.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
gi|393019272|gb|EJB20415.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|383750102|ref|YP_005425205.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
gi|380874848|gb|AFF20629.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|387907613|ref|YP_006337947.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
gi|387572548|gb|AFJ81256.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|403217071|emb|CCK71566.1| hypothetical protein KNAG_0H01520 [Kazachstania naganishii CBS
8797]
Length = 621
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+K+ L L+ T T+IFV TKR A ++ L + I+A +HG+ TQ R +L
Sbjct: 380 MDKKSALLDLLSSTKGGLTLIFVETKRMADQLTDFLIMQNIRATAIHGDRTQMERERALG 439
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
FK DVL+AT VAARGLDI V VINY +P ++ Y+HR+GRT RAG G ++S
Sbjct: 440 AFKSGTADVLVATAVAARGLDIPNVTLVINYDLPGDIDDYVHRIGRTGRAGNTGTAISFF 499
Query: 259 GEVDRKLVKQVIK 271
+ +VK +++
Sbjct: 500 NYNNNNIVKGLVE 512
>gi|420397037|ref|ZP_14896255.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
gi|393012699|gb|EJB13877.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1313]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFARTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420416460|ref|ZP_14915569.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
gi|393036889|gb|EJB37927.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
Length = 491
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|387781935|ref|YP_005792648.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|433646248|ref|YP_007291250.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433296025|gb|AGB21845.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 487
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 241 LDKVELVSRILQANGRGSTMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 300
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI + VINY++P + Y+HR+GRT RAGK G++V++
Sbjct: 301 AFRTGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTL 359
>gi|420418192|ref|ZP_14917284.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
gi|393033018|gb|EJB34081.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420394987|ref|ZP_14894218.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
gi|393015751|gb|EJB16916.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|386745758|ref|YP_006218975.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
gi|384552007|gb|AFI06955.1| ATP-dependent RNA helicase [Helicobacter pylori HUP-B14]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
RKDT+L LV +IF T E + ILL LG A LHG L+Q SR
Sbjct: 284 RKDTYL------IYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSR 337
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +L KFK ++L+ATDVAARGLDI V V+N +P + YIHRVGRTARAGK G+
Sbjct: 338 LGALNKFKGGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGI 397
Query: 254 SVSMAGEVDRKLVKQV 269
++++ + D ++ +++
Sbjct: 398 AINIVTQYDVEIYQRI 413
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 112/208 (53%), Gaps = 28/208 (13%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
+L+ L+ D ++F TKR E+ L L G A +HG+L+Q RL LRKFKD
Sbjct: 230 VLSRLLDVQSPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDG 289
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+ DVL+ATDVAARGLDI GV V NY +P E Y+HR+GRT RAG+ G++++ +
Sbjct: 290 KIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREM 349
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+K V + K R++P ++ P++ EA EG Q+ +T
Sbjct: 350 GYLKTV----EQTTKKRMLP-----MRPPTWD---------------EAFEG--QQRVTM 383
Query: 324 EKHDRLLNKA--DEQVSKAEKMLKEKKP 349
E+ + + DE +S A+++L E P
Sbjct: 384 ERIGETIKEGNIDEYMSVAKELLAEYDP 411
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 8/136 (5%)
Query: 140 DRKALLAALVCRTFKDH----TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
D+K LL L FKD T+IF TK A+++ LL GIK +HGN +Q +R
Sbjct: 235 DKKNLLLHL----FKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQR 290
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
+L F+ + L+ATD+AARG+DI + VINY +P+ E Y+HR+GRTARAGK G+++
Sbjct: 291 ALEDFRSGKNRALVATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAI 350
Query: 256 SMAGEVDRKLVKQVIK 271
++A +R L+K + K
Sbjct: 351 AIAEADERSLIKDIEK 366
>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 411
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%)
Query: 136 DTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
D + ALL L+ + T++FV T+ + LL GI + G++ Q R +
Sbjct: 227 DDQTHKFALLCNLLRQESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQ 286
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
+L +F E D+L+ATDVAARG+DI + VINY MP S + Y+HR+GRT RAG G ++
Sbjct: 287 ALGRFTKGEVDILLATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAI 346
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFP 295
S+ D ++V ++ + + P+K R+I P K P
Sbjct: 347 SLVEAHDMRIVSKIERYIEQPLKRRVIEELRPNNKEAKVP 386
>gi|68536703|ref|YP_251408.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264302|emb|CAI37790.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 453
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 77/121 (63%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LDR + LA ++ + ++F TKR+A + L LG + G +HG++ Q R ESL
Sbjct: 266 LDRLSALARILQSPGRGRCIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLD 325
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+F+ E DV++ATDVAARG+DI V VINY++P Y+HR+GRT RAG G +VS+
Sbjct: 326 EFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLI 385
Query: 259 G 259
G
Sbjct: 386 G 386
>gi|421721165|ref|ZP_16160442.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
gi|407225949|gb|EKE95719.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRHASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|385220091|ref|YP_005781563.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
Length = 492
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|399949627|gb|AFP65285.1| DEAD box protein [Chroomonas mesostigmatica CCMP1168]
Length = 398
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 142 KALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
K + +C F +++ FV T++ A ++ +L+ LLG K G +HG L Q R E+L KF
Sbjct: 228 KEIYFVFLCNEFIGSSILAFVDTQKYAEKITLLVKLLGFKGGCIHGGLKQSKRFENLHKF 287
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K E +LIATD+AARGLDI V VIN+ +P + YIHRVGRTARAG G ++++ +
Sbjct: 288 KLGEIKLLIATDLAARGLDIPCVDLVINFDLPSFAKEYIHRVGRTARAGNSGRAINLITQ 347
Query: 261 VD 262
D
Sbjct: 348 YD 349
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F+ T + + ILL LG A LHG L+Q +RL +L KF+ D+L+ATDVAAR
Sbjct: 304 TIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAAR 363
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V VINY +P + YIHRVGRTARAGK G ++S+ + D
Sbjct: 364 GLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYD 409
>gi|421714416|ref|ZP_16153737.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
gi|407218101|gb|EKE87930.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Query: 121 RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180
+P + + + F++ K+ + +LL ++ T++F TK +A + ++L G K
Sbjct: 209 QPVLAISHVLFQVAKE---QKTSLLKTIIKEEEMKSTLVFTRTKHKAKSLALVLQKAGYK 265
Query: 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
A + GNL+Q R E+L FK E +L+ATD+AARG+D++G+ VINY +P + E Y H
Sbjct: 266 AASIQGNLSQLKRQEALNGFKTGEFKILVATDIAARGIDVKGISHVINYDVPDTPETYTH 325
Query: 241 RVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYP 287
R GRT RA + G + AG+ D K++ + I++ R + PG+P
Sbjct: 326 RTGRTGRAERAGQAFIFAGQEDIKIISR-IEHCLGKKMRRQVTPGFP 371
>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 474
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 7/197 (3%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPP---VLLCLLCFRIRKD 136
D FV IE+ K + T+ + LL P V I ++
Sbjct: 199 DLGFVRDIEKVKKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVATSATASLITQE 258
Query: 137 THL---DRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
+L RKA LL+ L+ R ++FV T+ A +H L L G+K HG TQ +
Sbjct: 259 VYLVDTRRKAELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGA 318
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +L +FK + V++ATDVAARGLDI + VIN +P + E Y+HRVGRT RAG G
Sbjct: 319 RNRALDEFKSGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAG 378
Query: 253 VSVSMAGEVDRKLVKQV 269
++S DR++++++
Sbjct: 379 RAISFVSPQDREMLQEI 395
>gi|336315710|ref|ZP_08570618.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880029|gb|EGM77920.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 485
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 132 RIRKDTHLDRKALLAALVCRTFKDH----TMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
+I + +L K A +C+ ++ ++F+PTK EA+ + L GI + LHGN
Sbjct: 219 KIEQQVYLLGKGQKTAALCQLITENKWQQVLVFMPTKHEANRLSEQLTFAGIPSAALHGN 278
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
+Q +R ++L FK E VL+ATDVAARG+DI + V+N+ +P S Y+HR+GRT R
Sbjct: 279 KSQNARTKALADFKANELQVLVATDVAARGIDISQLPYVVNFALPRSPADYVHRIGRTGR 338
Query: 248 AGKGGVSVSMAGEVDRKLVKQV 269
AGK G++VS + ++QV
Sbjct: 339 AGKSGLAVSFVAPDEVPQLRQV 360
>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
Length = 505
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 247 LDKVELVSRVLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALK 306
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT RAGK GV+V++
Sbjct: 307 AFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTL 365
>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F+ TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 442
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIELIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDHLLLQKIGRYVEEPLKARVIDGLRPTTRAPS 387
>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|420409625|ref|ZP_14908771.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
gi|393029739|gb|EJB30819.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
Length = 484
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|441514562|ref|ZP_20996379.1| putative ATP-dependent RNA helicase [Gordonia amicalis NBRC 100051]
gi|441450631|dbj|GAC54340.1| putative ATP-dependent RNA helicase [Gordonia amicalis NBRC 100051]
Length = 536
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 261 LDKAELVARILQADGRGATMVFTRTKRTAQKVADDLAERGFKVGAVHGDLGQIAREKALK 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 321 RFRDGAIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 379
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 79/127 (62%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF TKR E+ + G +HG+++Q R+ +L+KFK+ D L+ATDVAAR
Sbjct: 248 TIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVATDVAAR 307
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+D+ V VINY +P +E Y+HR+GRT RA G++ S+ + ++KQ+ K K+
Sbjct: 308 GIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQIEKFTKSK 367
Query: 277 VKHRIIP 283
++ + IP
Sbjct: 368 IRRKEIP 374
>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 445
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + KD
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + +K R+I PR K P
Sbjct: 362 KLLGKIKRYTEELLKPRVIEGLEPRTKAP 390
>gi|420495583|ref|ZP_14994147.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
gi|393111894|gb|EJC12415.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-23]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G A +HG+LTQ R+ LRKFK+ + D+L+ATDVAAR
Sbjct: 243 TIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIKNA 273
GLDI GV V NY +P E Y+HR+GRT RAG G SV+ E+D ++++++ K
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKR 362
Query: 274 KNPVK 278
+P+K
Sbjct: 363 MDPLK 367
>gi|404258993|ref|ZP_10962307.1| putative ATP-dependent RNA helicase [Gordonia namibiensis NBRC
108229]
gi|403402387|dbj|GAC00717.1| putative ATP-dependent RNA helicase [Gordonia namibiensis NBRC
108229]
Length = 540
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L
Sbjct: 261 LDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALG 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 321 RFRDGTIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 379
>gi|420468314|ref|ZP_14967056.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
gi|393087995|gb|EJB88647.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-10]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T A ++ +L +LG A LHG LTQ RL +L KFK + +L+ATDVAARG
Sbjct: 310 IVFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKFKSGDKQILVATDVAARG 369
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
LDI V V+NY +P + YIHRVGRTARAG+ G SVS+ + D +L+ ++ K
Sbjct: 370 LDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELILRIEK 423
>gi|385840089|ref|YP_005863413.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|418961874|ref|ZP_13513758.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|380343682|gb|EIA32031.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G A +HG+LTQ R+ LRKFK+ + D+L+ATDVAAR
Sbjct: 243 TIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIKNA 273
GLDI GV V NY +P E Y+HR+GRT RAG G SV+ E+D ++++++ K
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKR 362
Query: 274 KNPVK 278
+P+K
Sbjct: 363 MDPLK 367
>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 446
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++FV TK + ++ L GIK +HGN TQ RL +L F
Sbjct: 232 KRELLLHLLAQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 292 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQ 351
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRL 289
D KL++Q+++ + R +P P++
Sbjct: 352 EDAKLLRQIVRLLDRDMDIRDVPDFEPQV 380
>gi|388258999|ref|ZP_10136174.1| ATP-dependent RNA helicase RhlB [Cellvibrio sp. BR]
gi|387937758|gb|EIK44314.1| ATP-dependent RNA helicase RhlB [Cellvibrio sp. BR]
Length = 539
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LL L+ + + ++F + E ++ L GIKAG L G + Q R+ +L FK
Sbjct: 358 LLYNLIQQEHAESMIVFANRRDECRDLQEKLERHGIKAGLLSGEIAQNKRVSTLDAFKSG 417
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
E VL+ATDVA RG+ I G+ V+N+ +P E Y+HR+GRT RAGK G S+S A E D
Sbjct: 418 EIKVLVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKNGTSISFACEDDA 477
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP-SFPPPPLAEIVDKY 306
+L++ + P+K PP Y L P S P P A D++
Sbjct: 478 QLLEPIGTLLGKPIKCE-QPPEYLMLAPPESLPAPARARNNDRH 520
>gi|404445393|ref|ZP_11010534.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
gi|403652333|gb|EJZ07390.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
Length = 505
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 246 LDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQAAREKALK 305
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK G++V++
Sbjct: 306 SFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTL 364
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ A L L ++ +IF T +A + I+L LG A LHG L+Q RL +L +
Sbjct: 242 DKDAYLVYLANTLAQNSIIIFTRTVHDASRLSIILRTLGFPAVPLHGQLSQSQRLGALGQ 301
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK VL+ATDVA+RGLDI V VIN+ +P + YIHRVGRTARAG+ G S+++
Sbjct: 302 FKSGGRRVLVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVT 361
Query: 260 EVDRKLVKQV 269
+ D +LV+++
Sbjct: 362 QYDVELVQRI 371
>gi|420470152|ref|ZP_14968863.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
gi|393087198|gb|EJB87868.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L ++ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYRSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|417810743|ref|ZP_12457421.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|335348538|gb|EGM50040.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
Length = 499
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G A +HG+LTQ R+ LRKFK+ + D+L+ATDVAAR
Sbjct: 250 TIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 309
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIKNA 273
GLDI GV V NY +P E Y+HR+GRT RAG G SV+ E+D ++++++ K
Sbjct: 310 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKR 369
Query: 274 KNPVK 278
+P+K
Sbjct: 370 MDPLK 374
>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 505
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 247 LDKVELVSRVLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALK 306
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT RAGK GV+V++
Sbjct: 307 AFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTL 365
>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides ATCC 17029]
gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 461
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 86/138 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL + + + ++ ++F TK + ++ LL G KAG +HGN +Q R +L +
Sbjct: 239 DKAKLLESYLQKHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTE 298
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+D DVL+ATDVAARG+DI GV+ V NY MP+ E+Y+HR+GRTARAG G +V+
Sbjct: 299 FRDGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVA 358
Query: 260 EVDRKLVKQVIKNAKNPV 277
+ + + V K K P+
Sbjct: 359 PAEMEEFRAVEKLLKQPI 376
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 70/105 (66%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++FV T A + +LL LG A LHG +TQP RL +L KFK + +LIATDVA+RG
Sbjct: 279 LVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRG 338
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V VIN+ +P + YIHRVGRTARAG+ G S++M + D
Sbjct: 339 LDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYD 383
>gi|375137560|ref|YP_004998209.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359818181|gb|AEV70994.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 494
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ ++A ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 251 LDKVEMVARILQAEGRGATMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 310
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI + VINY++P + Y+HR+GRT RAGK G++V++
Sbjct: 311 SFRTGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTL 369
>gi|440778785|ref|ZP_20957535.1| RhlE [Mycobacterium avium subsp. paratuberculosis S5]
gi|436720801|gb|ELP45005.1| RhlE [Mycobacterium avium subsp. paratuberculosis S5]
Length = 448
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 190 LDKVELVSRVLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALK 249
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT RAGK GV+V++
Sbjct: 250 AFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTL 308
>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|417787885|ref|ZP_12435568.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|334308062|gb|EGL99048.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G A +HG+LTQ R+ LRKFK+ + D+L+ATDVAAR
Sbjct: 243 TIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 302
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIKNA 273
GLDI GV V NY +P E Y+HR+GRT RAG G SV+ E+D ++++++ K
Sbjct: 303 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKR 362
Query: 274 KNPVK 278
+P+K
Sbjct: 363 MDPLK 367
>gi|399219035|emb|CCF75922.1| unnamed protein product [Babesia microti strain RI]
Length = 635
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
T +K L AL+ T K MIFV K++A + + + A LHG Q +R +
Sbjct: 475 TEGKKKVRLDALLSTT-KSPIMIFVNQKKQADALAKTISNMNYSAISLHGGKLQENREIA 533
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L FK D+L+ATDVA RG+D+ GV TVINY MP +E YIHR+GRT RAGK G+++S
Sbjct: 534 LESFKAGRVDILVATDVAGRGIDVEGVNTVINYDMPKDIESYIHRIGRTGRAGKKGLAIS 593
Query: 257 MAGEVDRKL---VKQVIKNAKNPV 277
E D L +KQ + ++ N V
Sbjct: 594 FVTEDDSHLFYDLKQQLISSGNVV 617
>gi|420398321|ref|ZP_14897534.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1962]
gi|393014995|gb|EJB16166.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1962]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYYLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
Length = 499
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G A +HG+LTQ R+ LRKFK+ + D+L+ATDVAAR
Sbjct: 250 TIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAAR 309
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVDR-KLVKQVIKNA 273
GLDI GV V NY +P E Y+HR+GRT RAG G SV+ E+D ++++++ K
Sbjct: 310 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKR 369
Query: 274 KNPVK 278
+P+K
Sbjct: 370 MDPLK 374
>gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 446
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++FV TK + ++ L GIK +HGN TQ RL +L F
Sbjct: 232 KRELLLYLLAQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 292 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQ 351
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRL 289
D KL++Q+++ + R +P P++
Sbjct: 352 EDAKLLRQIVRLLDRDMDIRDVPDFEPQV 380
>gi|420502234|ref|ZP_15000775.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
gi|393153514|gb|EJC53807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
Length = 492
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMVFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|392980263|ref|YP_006478851.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326196|gb|AFM61149.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 442
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEDATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDYLLLQKIGRYVDEPLKARVIDGLRPTTRAPS 387
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 33/223 (14%)
Query: 119 LLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166
LL+ PVL+ + L +R+ D+ R+ L + R +K +IF TK
Sbjct: 200 LLKSPVLIEVAKPNSTADKIEQLAYRV--DSQRKREMLSYLIGSRQWK-QVLIFSRTKHG 256
Query: 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTV 226
A + L L GI+AG +HG+ +Q +R ++L FK+ VL+ATD+AARGLDI + V
Sbjct: 257 ADRLAKQLRLDGIEAGAIHGDKSQGARTKALDDFKNNRLSVLVATDIAARGLDIEELPIV 316
Query: 227 INYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGY 286
+NY +P E Y+HR+GRT RAG G+++S+ D +++ + K K + +++ PGY
Sbjct: 317 VNYDLPQVAEDYVHRIGRTGRAGNSGLALSLITPDDLVMLQAIEKVTKQVIAQQVL-PGY 375
Query: 287 ---PRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKH 326
P++ S K +A E VQK+ + K
Sbjct: 376 EHDPKMNHSS--------------KKADAEEERVQKVASRNKQ 404
>gi|384888906|ref|YP_005763208.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
Length = 492
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 20/184 (10%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TK+ E+ L + G +HG++TQ R+ +LRKFK+ + L+ATDVAARG
Sbjct: 247 IIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKFKEGNLEFLVATDVAARG 306
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
+DI + V NY +P + Y+HR+GRT RA + G + ++ + + +KQ+ K+ K +
Sbjct: 307 IDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTAREYRFLKQIEKDTKGTI 366
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDR---LLNKAD 334
K + +P I D + +K ++I G V++ L+++ + R L+ + D
Sbjct: 367 KRKELPT-----------------IDDIFLSKYKSIVGRVKETLSQDDYKRFVPLVTELD 409
Query: 335 EQVS 338
E+ S
Sbjct: 410 EEYS 413
>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
Length = 398
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 149 VCRTFKDHT-MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207
+C F + ++FV T++ A + +L LG A LHG + Q RLE L+KF+ + +
Sbjct: 235 LCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKI 294
Query: 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267
LIATD+A+RGLDI V V+NY +PH + Y+HRVGRTARAGK G ++++ + D L +
Sbjct: 295 LIATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQ 354
Query: 268 QV 269
++
Sbjct: 355 KI 356
>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 446
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++FV TK + ++ L GIK +HGN TQ RL +L F
Sbjct: 232 KRELLLYLLAQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 292 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQ 351
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRL 289
D KL++Q+++ + R +P P++
Sbjct: 352 EDAKLLRQIVRLLDRDMDIRDVPDFEPQV 380
>gi|407693805|ref|YP_006818594.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
gi|407389862|gb|AFU20355.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + KD
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + +K R+I PR K P
Sbjct: 362 KLLGKIKRYTEELLKPRVIEGLEPRTKAP 390
>gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
Length = 440
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVKHKTALLVHLLQQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P K PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPSTKQPS 387
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T E + L LLG A LHG L+Q +RL +L KF+ D+L+ATDVAARG
Sbjct: 296 IIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARG 355
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V V+N+ +P + +IHR+GRTARAGK GV++S A + D
Sbjct: 356 LDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYD 400
>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
Length = 399
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ +LA L D ++F TKR A + L G+K+G +HGN +Q R +++ +
Sbjct: 280 DKFGMLADLFQNRAMDKVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQ 339
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
FK ET VL+ATDVAARG+D+ V VINY++P +++ YIHR+GRT RAGK G +++
Sbjct: 340 FKSGETRVLVATDVAARGIDVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAIT 396
>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084233|ref|YP_006000515.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559570|ref|ZP_12210477.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338177898|gb|EGO80936.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 446
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++FV TK + ++ L GIK +HGN TQ RL +L F
Sbjct: 232 KRELLLYLLAQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSF 291
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 292 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQ 351
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRL 289
D KL++Q+++ + R +P P++
Sbjct: 352 EDAKLLRQIVRLLDRDMDIRDVPDFEPQV 380
>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
Length = 468
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
I D+H R+ LL L+ + ++F TK+ A ++ L G+ A +HG+ +Q +
Sbjct: 228 ISIDSHRKRE-LLERLIVDLNMNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQT 286
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL+ L +FK E VL+ATDVAARGLDI + V+NY MP E Y+HR+GRT RAG G
Sbjct: 287 RLDVLNQFKSGELRVLVATDVAARGLDIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADG 346
Query: 253 VSVSMAGEVDRKLVKQV 269
V++S+ E ++K+ + +
Sbjct: 347 VAISLMDETEQKMYEAI 363
>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 451
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 141 RKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
RKA LLA L+ R ++FV TK A +H L L GIK HG+ TQ +R +L +
Sbjct: 227 RKAELLAELIGRNNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQ 286
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK E VL+ATDVAARGLDI + VIN +P + Y+HR+GRT RAG GVS+S
Sbjct: 287 FKAGELRVLVATDVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVA 346
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ D + I+ R + PGY
Sbjct: 347 KQDETALG-AIEALIGKTLPREVQPGY 372
>gi|357589331|ref|ZP_09127997.1| hypothetical protein CnurS_03986 [Corynebacterium nuruki S6-4]
Length = 449
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 80/121 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LDR ++LA L+ + T++F TKR+A + L LG + G +HG++ Q R +SL
Sbjct: 238 LDRMSVLARLLQTPGRGRTIVFARTKRQAAMVANDLADLGFRVGAVHGDMRQKDREQSLA 297
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F++ D+++ATDVAARG+D+ V VINY++P + Y+HR+GRT RAG GV+V++
Sbjct: 298 AFREGTVDIMVATDVAARGIDVDDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLV 357
Query: 259 G 259
G
Sbjct: 358 G 358
>gi|385226514|ref|YP_005786438.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
gi|344331427|gb|AEN16457.1| ATP-dependent RNA helicase [Helicobacter pylori SNT49]
Length = 492
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIIAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
Length = 478
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A ++ L +G E HGNL+Q R + +F+D + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR++V+Q+ K +
Sbjct: 303 ARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQIEKRLR 362
Query: 275 N 275
Sbjct: 363 Q 363
>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + K+
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + A+ +K R+I PR K P
Sbjct: 362 KLLGKIKRYAEELLKPRVIEGLEPRTKAP 390
>gi|378718867|ref|YP_005283756.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|375753570|gb|AFA74390.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 553
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G G +HG+L Q +R ++L+
Sbjct: 279 LDKAELVARILQAEGRGATMIFTRTKRAAQKVADDLAERGFSVGAVHGDLGQVAREKALK 338
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 339 KFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 397
>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + KD
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + +K R+I PR K P
Sbjct: 362 KLLGKIKRYTEELLKPRVIEGLEPRTKAP 390
>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 445
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LLA L+ + ++FV + + E+ L G+++ L G++ Q R +++ + KD
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
+VL+ATDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G ++S+ D
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
KL+ ++ + + +K R+I PR K P
Sbjct: 362 KLLGKIKRYTEELLKPRVIEGLEPRTKAP 390
>gi|407927370|gb|EKG20264.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 363
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF T E + ILL LG A LHG L+Q +RL +L KFK + D+L+ATDVAAR
Sbjct: 182 TIIFTRTVNETQRIAILLRALGFGAIPLHGQLSQSARLGALGKFKAKTRDILVATDVAAR 241
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
GLDI V VINY +P + Y+HRVGRTARAGK G +VS+ + D
Sbjct: 242 GLDIPSVSYVINYDLPPDSKTYVHRVGRTARAGKSGKAVSIVTQYD 287
>gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 446
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPP---VLLCLLCFRIRKD 136
D FV IE + + + T+ + L+ P V +I ++
Sbjct: 173 DMGFVRDIERVKRLVAVEHQTLFFSATYSEEVKALAQKMLVAPEWIDVTTAATASKIAQE 232
Query: 137 THL---DRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
+L RKA LL+ LV R ++FV +K A +H L L G+K+ HG+ TQ S
Sbjct: 233 VYLVDKRRKAELLSELVGRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGS 292
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +L +FK+ + V++ATDVAARGLDI + VIN +P + E Y+HRVGRT RAG G
Sbjct: 293 RNRALEEFKNGKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEG 352
Query: 253 VSVSMAGEVDRKLVKQV 269
++S D+ ++ ++
Sbjct: 353 RAISFVSPQDKTMLSEI 369
>gi|420337315|ref|ZP_14838881.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-315]
gi|391260193|gb|EIQ19258.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-315]
Length = 444
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ +TPS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPS 387
>gi|386755314|ref|YP_006228531.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
gi|384561572|gb|AFI02038.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan18]
Length = 492
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRFSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
gi|416265843|ref|ZP_11641428.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
gi|416294993|ref|ZP_11651044.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
gi|417683207|ref|ZP_12332556.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
gi|420326767|ref|ZP_14828516.1| ATP-dependent RNA helicase srmB [Shigella flexneri CCH060]
gi|420353999|ref|ZP_14855099.1| ATP-dependent RNA helicase srmB [Shigella boydii 4444-74]
gi|420381574|ref|ZP_14881018.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 225-75]
gi|421683675|ref|ZP_16123468.1| srmB, DEAD-box RNA helicase [Shigella flexneri 1485-80]
gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
gi|391249514|gb|EIQ08745.1| ATP-dependent RNA helicase srmB [Shigella flexneri CCH060]
gi|391277332|gb|EIQ36082.1| ATP-dependent RNA helicase srmB [Shigella boydii 4444-74]
gi|391299708|gb|EIQ57659.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 225-75]
gi|404338031|gb|EJZ64479.1| srmB, DEAD-box RNA helicase [Shigella flexneri 1485-80]
Length = 444
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ +TPS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPS 387
>gi|359782600|ref|ZP_09285820.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359369420|gb|EHK69991.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 630
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 11/173 (6%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
FRI + ++ALLA L+ + ++F TK A+ + L G+ A +HGN +Q
Sbjct: 228 FRIPANQ---KRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLNKHGLPAAPIHGNKSQ 284
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
+R ++L FK E VL+ATD+AARGLDI + V+N+ +P+ E Y+HR+GRT RAG+
Sbjct: 285 NARTKALADFKSNEVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGR 344
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKH--------RIIPPGYPRLKTPSFP 295
G ++S+ + KL+K + + K + + +PP P ++ P P
Sbjct: 345 SGEAISLVSPDEEKLLKAIERLTKQSIPDGDMQGFDPQSVPPEQPEVRAPREP 397
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T E + L LLG A LHG L+Q +RL +L KF+ D+L+ATDVAARG
Sbjct: 296 IIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARG 355
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V V+N+ +P + +IHR+GRTARAGK GV++S A + D
Sbjct: 356 LDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYD 400
>gi|359765387|ref|ZP_09269216.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359317208|dbj|GAB22049.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 553
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G G +HG+L Q +R ++L+
Sbjct: 279 LDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALK 338
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 339 KFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 397
>gi|423141219|ref|ZP_17128857.1| DEAD/DEAH box helicase [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|379053773|gb|EHY71664.1| DEAD/DEAH box helicase [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
Length = 444
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLTQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
Length = 477
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 81/129 (62%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A ++ L +G E HGNL+Q R + +F+D +++ATD+A
Sbjct: 243 ESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ G+ VINY +P + E YIHR+GRT RAGK G ++S+ DR++++Q+ + +
Sbjct: 303 ARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKLR 362
Query: 275 NPVKHRIIP 283
+ IP
Sbjct: 363 QKIDICKIP 371
>gi|420444889|ref|ZP_14943803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
gi|393063083|gb|EJB63930.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
Length = 491
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|404216140|ref|YP_006670335.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
gi|403646939|gb|AFR50179.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
Length = 527
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L
Sbjct: 261 LDKAELVARILQADGRGATMVFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALN 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F+D DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G++V++
Sbjct: 321 RFRDGTIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTL 379
>gi|390438620|ref|ZP_10227070.1| putative RNA helicase [Microcystis sp. T1-4]
gi|389837951|emb|CCI31194.1| putative RNA helicase [Microcystis sp. T1-4]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P E+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGE 395
>gi|345300441|ref|YP_004829799.1| DEAD/DEAH box helicase [Enterobacter asburiae LF7a]
gi|345094378|gb|AEN66014.1| DEAD/DEAH box helicase domain protein [Enterobacter asburiae LF7a]
Length = 442
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADDLEHKVELLKHLLKQEDATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGIAISLVEAHDFLLLQKIGRYVDEPLKARVISELRPTTRAPS 387
>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 492
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H + L L+ T+IF T E + LL LG A LHG L+Q +RL +L
Sbjct: 276 HKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGAL 335
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ D+L+ATDVAARGLDI V V+N+ +P + Y+HRVGRTARAGK GV++S
Sbjct: 336 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 395
Query: 258 AGEVD 262
+ D
Sbjct: 396 VTQYD 400
>gi|403412636|emb|CCL99336.1| predicted protein [Fibroporia radiculosa]
Length = 974
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 6/137 (4%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
++KD HL A A ++ +IF T +A + I+L LG A LHG L+Q +
Sbjct: 761 VQKDVHLIYLANTLA------QNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSA 814
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L KFK +L+ATDVA+RGLDI V VINY +P + YIHRVGRTARAG+ G
Sbjct: 815 RLGALGKFKSGGRKILVATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSG 874
Query: 253 VSVSMAGEVDRKLVKQV 269
SV++ + D +L++++
Sbjct: 875 KSVTLVTQYDVELIQRI 891
>gi|425446720|ref|ZP_18826721.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
gi|389732942|emb|CCI03221.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 83/129 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q+ + +
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLR 362
Query: 275 NPVKHRIIP 283
++ IP
Sbjct: 363 QRLESSPIP 371
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TKR E+ L L G A +HG+LTQ R+ +LRKFK+ DVL+ATDVAAR
Sbjct: 244 SIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAAR 303
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V N+ +P E Y+HR+GRT RAG+ G++V+ ++ +++ + + K
Sbjct: 304 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAIEQTTKRK 363
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
+ R+K P+ EAIEG+ Q
Sbjct: 364 MD---------RMKEPTLD---------------EAIEGQQQ 381
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H + L L+ +IF T E + LL LG A LHG L+Q SRL +L
Sbjct: 277 HKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGAL 336
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ D+L+ATDVAARGLDI V V+N+ +P + Y+HRVGRTARAGK GV++S
Sbjct: 337 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 396
Query: 258 AGEVD 262
+ D
Sbjct: 397 VTQYD 401
>gi|359426039|ref|ZP_09217126.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
gi|358238516|dbj|GAB06708.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
Length = 556
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 81/119 (68%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 283 LDKAELVARILQAEGRGATMVFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALK 342
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF++ + DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G+++++
Sbjct: 343 KFREGKIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAITL 401
>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 442
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + ++FV + HE+ L GI L G L Q R
Sbjct: 228 RADDIKHKTALLLHLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINTSYLEGELVQAKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VL+ATD+AARG+DI V V N+ MP + + Y+HR+GRT RAGK G+
Sbjct: 288 NEAIKRVVDGRVNVLVATDIAARGIDIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGI 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++I+ K P+K R+I P + PS
Sbjct: 348 AISLVEAHDNLLLGKIIRYVKEPIKARVIDELRPTTRPPS 387
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 68/105 (64%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T E + ILL LG A LHG L+Q SRL +L KF+ ++L+ATDVAARG
Sbjct: 300 IIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARG 359
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V V+NY MP + YIHRVGRTARAGK G ++S + D
Sbjct: 360 LDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYD 404
>gi|422302445|ref|ZP_16389808.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|425454118|ref|ZP_18833865.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
gi|389788317|emb|CCI16072.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|389805290|emb|CCI14994.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P E+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGE 395
>gi|425436507|ref|ZP_18816943.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|425451380|ref|ZP_18831202.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440752520|ref|ZP_20931723.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
gi|389678768|emb|CCH92412.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|389767364|emb|CCI07225.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440177013|gb|ELP56286.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P E+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGE 395
>gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 430
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 89/149 (59%), Gaps = 6/149 (4%)
Query: 141 RKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
RKA LL+ L+ R ++F TK A ++ L L GIK G HG+ TQ +R +L +
Sbjct: 227 RKAELLSELIGRNNWQQVLVFATTKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEE 286
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + V++ATDVAARG+DI+ + VIN +P+ E YIHR+GRT RAG G ++S
Sbjct: 287 FKAGKLRVMVATDVAARGIDIQALPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVC 346
Query: 260 EVDRKLVKQV--IKNAKNPVKHRIIPPGY 286
D +++ ++ + K P RI+ PGY
Sbjct: 347 PSDEEMLDEIESLIELKLP---RIVLPGY 372
>gi|425442860|ref|ZP_18823096.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|425467451|ref|ZP_18846734.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
gi|389715972|emb|CCH99724.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|389829775|emb|CCI28639.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 83/129 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q+ + +
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLR 362
Query: 275 NPVKHRIIP 283
++ IP
Sbjct: 363 QRLESSPIP 371
>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P E+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGE 395
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ +L L+ ++F T A +L +LG A LHG L+Q RL SL KF
Sbjct: 349 KNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKF 408
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K + ++L+ATDVAARGLDI V VINY +P + YIHRVGRTARAG+ G S+S+ +
Sbjct: 409 KSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 468
Query: 261 VDRKL 265
D ++
Sbjct: 469 YDLEM 473
>gi|425461891|ref|ZP_18841365.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443648367|ref|ZP_21129987.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389825195|emb|CCI25254.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443335213|gb|ELS49690.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 479
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 19/167 (11%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R +++F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+L++Q
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQ------ 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKV-----EAIEGE 316
++ R+ R + S P P E+ K AK+ EA+ GE
Sbjct: 357 --IEQRL------RQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGE 395
>gi|425433062|ref|ZP_18813601.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
gi|410714366|gb|EKQ71841.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
Length = 491
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F+ TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|403720926|ref|ZP_10944236.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207467|dbj|GAB88567.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 529
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ LG G G +HG+L Q +R ++L+
Sbjct: 256 LDKAELVARILQADGRGATMIFTRTKRTAQKVADDLGERGFSVGAVHGDLGQVAREKALK 315
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+F++ + DVL+ATDVAARG+DI V VINY+ P + YIHR+GRT RAG+ G ++++
Sbjct: 316 RFRNGDIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYIHRIGRTGRAGRTGTAITL 374
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ L LV ++ +IF T +A + I+L LG A LHG L+Q RL +L K
Sbjct: 240 DKDVNLVYLVNALAQNSIIIFTRTVHDAARLTIVLRTLGFSAVPLHGQLSQSQRLGALAK 299
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +L+ATDVA+RGLDI V VIN+ +P + YIHRVGRTARAG+ G S+++
Sbjct: 300 FKSGGRKILVATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVT 359
Query: 260 EVDRKLVKQV 269
+ D +LV+++
Sbjct: 360 QYDVELVQRI 369
>gi|420456516|ref|ZP_14955337.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
gi|393075147|gb|EJB75902.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
Length = 491
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T+IF T + ++ I+L LG A LHG L Q RL +L KFK ++L+ATDVA
Sbjct: 263 NSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNKFKAGARNILVATDVA 322
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
+RGLDI V VINY +P S + YIHRVGRTARAG+ G SV+ + D +L++++ K+
Sbjct: 323 SRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVTQYDVELIQRIEKD 380
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 76/115 (66%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A E+ L G E HGNL+Q R + +F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR+++KQ+
Sbjct: 303 ARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQI 357
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H + L L+ T+IF T E + LL LG A LHG L+Q +RL +L
Sbjct: 276 HKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGAL 335
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ D+L+ATDVAARGLDI V V+N+ +P + Y+HRVGRTARAGK GV++S
Sbjct: 336 GKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISF 395
Query: 258 AGEVD 262
+ D
Sbjct: 396 VTQYD 400
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G A +HG+L+Q RL L+KFK+ DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRLSVLKKFKEGSIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y+HR+GRT RAGK GV+++ ++ + V + K +
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVALTFVTHREKSYLSVVERTTKRKM 363
Query: 278 KHRIIPP 284
+ +++PP
Sbjct: 364 E-KMVPP 369
>gi|344288523|ref|XP_003415998.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
[Loxodonta africana]
Length = 628
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213
KD ++FV K A ++ L + GI LHGN Q R ++L FK E+ +LIATD+
Sbjct: 467 KDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGNGEQSDREQALDDFKREKVKILIATDL 526
Query: 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273
A+RGLD++ + V NY P ++E Y+HRVGRT RAGK G SV++ + D K+ ++IK
Sbjct: 527 ASRGLDVQDITHVYNYDFPQNIEEYVHRVGRTGRAGKSGTSVTLITQDDWKIANELIKIL 586
Query: 274 KNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRA 308
K + F P L + ++Y+A
Sbjct: 587 K---------------RANQFVPDELVTMAERYKA 606
>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 434
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 96/156 (61%), Gaps = 6/156 (3%)
Query: 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
ALL+ L+ D ++FV T+R A+++ + L GIKA +HG +Q +R +L +FK
Sbjct: 232 ALLSYLIGHHRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKS 291
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM--AGE 260
+ VL+ATDVAARGLDI + VINY +P+ E Y+HR+GRT RAG+ G ++S+ A E
Sbjct: 292 GKVTVLVATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADE 351
Query: 261 VDR-KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFP 295
VD + ++ +I + P++ R + P+ P P
Sbjct: 352 VDDLRAIQDLI---RKPLERRFVEDYEPQHVLPETP 384
>gi|440232027|ref|YP_007345820.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440053732|gb|AGB83635.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 442
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGEAIREFAERILNEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLIHLLQQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VLIATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLIATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P+ + PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPKTRVPS 387
>gi|429097498|ref|ZP_19159604.1| ATP-dependent RNA helicase SrmB [Cronobacter dublinensis 582]
gi|426283838|emb|CCJ85717.1| ATP-dependent RNA helicase SrmB [Cronobacter dublinensis 582]
Length = 305
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L GI L G + Q R
Sbjct: 102 RADNIEHKTALLVHLLKQPEATRSIVFVRKRDRVHELANWLREAGINNCYLEGEMVQVKR 161
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VLIATDVAARG+DI V VIN+ MP + + Y+HR+GRTARAG+ G
Sbjct: 162 NEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGT 221
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ +V + P+K R+I P + PS
Sbjct: 222 AISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPTTRAPS 261
>gi|404421752|ref|ZP_11003461.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403658619|gb|EJZ13342.1| DEAD/DEAH box helicase [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 499
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 78/119 (65%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 241 LDKSELVSRILQAEGRGATMIFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 300
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAGK GV++++
Sbjct: 301 SFRTGAVDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITL 359
>gi|366160088|ref|ZP_09459950.1| ATP-dependent RNA helicase SrmB [Escherichia sp. TW09308]
gi|432373198|ref|ZP_19616236.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE11]
gi|430895204|gb|ELC17475.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE11]
Length = 444
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G+++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 344 RKGIAISLVEAHDHLLLGKVSRYIEEPIKARVIDELRPKTRAPS 387
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
++ A L L MIF T ++ + I+L LG A LHG +TQ RL SL K
Sbjct: 263 NKDAYLLYLANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNK 322
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +L+ATDVA+RGLDI V VINY MP + + Y+HRVGRTARAG+ G S+++
Sbjct: 323 FKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT 382
Query: 260 EVDRKLVKQV 269
+ D ++++++
Sbjct: 383 QYDVEILQRI 392
>gi|386823670|ref|ZP_10110813.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica PRI-2C]
gi|386379365|gb|EIJ20159.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica PRI-2C]
Length = 441
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + +A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGDAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLVHLLQQPDVLKSVIFVRKRERVHELAAWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P K PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPSTKVPS 387
>gi|448243533|ref|YP_007407586.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445213897|gb|AGE19567.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 441
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLIHLLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P+ K P+
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPKTKVPN 387
>gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320]
gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|425068688|ref|ZP_18471804.1| ATP-dependent RNA helicase srmB [Proteus mirabilis WGLW6]
gi|425071790|ref|ZP_18474896.1| ATP-dependent RNA helicase srmB [Proteus mirabilis WGLW4]
gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|404598159|gb|EKA98645.1| ATP-dependent RNA helicase srmB [Proteus mirabilis WGLW4]
gi|404599067|gb|EKA99529.1| ATP-dependent RNA helicase srmB [Proteus mirabilis WGLW6]
Length = 451
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F + IE +T T + NA + +L PV L +
Sbjct: 164 DMGFANDIETIAGETRWRKQTLLFSATLEGNAVIDFAQRILNEPVELNADPSRRERKKIQ 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
F D + ALLA L+ + +++FV + E+ L GIKA L G +
Sbjct: 224 QFYYHADNLDHKTALLAHLLKQEEVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + + VLIATDVA+RGLD+ + V N+ +P + + Y+HR+GRT RAG
Sbjct: 284 QTQRNEAIKRVESGKMHVLIATDVASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K+R++ P K PS
Sbjct: 344 RKGTAISLVEAHDYPLLGKISRYIQEPIKYRVVAQLRPVTKAPS 387
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 68/100 (68%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVT 341
>gi|386389052|ref|ZP_10073883.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
gi|385696213|gb|EIG26715.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
Length = 445
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRKDT---- 137
+ +D E + A W K T+ +A++ L LL PV + R RK
Sbjct: 172 FGQDAEKIAAETRWRKHTWLFSATLEGELLTDFAKRLLNDPVQIEAEPSRRERKKIQQWY 231
Query: 138 -HLD----RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
H D + LA L+ + ++FV + E+ L GI++ L G + Q
Sbjct: 232 YHSDNVEHKTKQLARLISELAMEKAIVFVRRRENVRELSETLRKRGIRSTYLEGEMAQTQ 291
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R +++ + K+ +VL++TDVAARG+DI V VIN+ +P+S + Y+HR+GRTARAGK G
Sbjct: 292 RNQAISRLKEGGVNVLVSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKG 351
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++S+ D KL+ ++ + + P+K R+I PR K P
Sbjct: 352 SAISLVEAHDYKLLGKIKRYTEEPLKPRVIEGLEPRTKAP 391
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
+ KDT+L +C F T+I F T E + ILL LG+ A LHG L+Q
Sbjct: 315 MHKDTYL-------VYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQS 367
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RL +L KF+ ++L+ATDVAARGLDI V VIN+ +P + Y+HRVGRTARAGK
Sbjct: 368 ARLGALNKFRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKS 427
Query: 252 GVSVSMAGEVD 262
G ++S+ + D
Sbjct: 428 GHAISIVTQYD 438
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR L ++ +IF TKR E+ + G +HG++ Q RL +L
Sbjct: 226 HKDRFESLCRILDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTL 285
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
RKFK+ D L+ATDVAARG+D+ V VINY +P +E Y+HR+GRT RA K G++ S+
Sbjct: 286 RKFKEGTLDFLVATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSL 345
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIP 283
+ ++KQ+ K K+ +K + IP
Sbjct: 346 VTPREYIMIKQLEKFTKSKIKRKEIP 371
>gi|453066527|gb|EMF07456.1| ATP-dependent RNA helicase SrmB [Serratia marcescens VGH107]
Length = 440
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLIHLLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P+ K P+
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPKTKVPN 387
>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
Length = 459
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%)
Query: 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLES 196
T +++ALL L+ + ++F TK A + LL GI A +HGN +Q R +
Sbjct: 227 TQQEKQALLTILLADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERA 286
Query: 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
L +F+ +T VL+ATD+AARG+DI GV V N+ +P+ E Y+HR+GRTARAG+ G++++
Sbjct: 287 LGEFRSGQTRVLVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIA 346
Query: 257 MAGEVDRKLVKQVIK 271
E +R +K + K
Sbjct: 347 FCAEDERPYLKDIEK 361
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
+ KDT+L +C F T+I F T E + ILL LG+ A LHG L+Q
Sbjct: 315 MHKDTYL-------VYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQS 367
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RL +L KF+ ++L+ATDVAARGLDI V VIN+ +P + Y+HRVGRTARAGK
Sbjct: 368 ARLGALNKFRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKS 427
Query: 252 GVSVSMAGEVD 262
G ++S+ + D
Sbjct: 428 GHAISIVTQYD 438
>gi|238788233|ref|ZP_04632028.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
gi|238723820|gb|EEQ15465.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
Length = 438
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLL------- 126
D F IE +T W K T +A++ +L PV L
Sbjct: 164 DMGFAQDIETIAAETR------WRKQTLLFSATLEGEAIREFAERILNEPVELEADPSRR 217
Query: 127 ---CLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
+L + R D + ALL L+ + ++IFV T+ + H++ L GI A
Sbjct: 218 ERKKILQWYYRADNIEHKTALLVHLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWF 277
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q R E++ + D +VL+ATDVA+RGLDI + V N+ +P + + Y+HR+G
Sbjct: 278 LEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGLDIDDISHVFNFDLPLTADVYLHRIG 337
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RT RAG+ GV++S+ D L+ ++ + K P+K R++ P K PS
Sbjct: 338 RTGRAGRKGVAISLVEAHDHLLLGKIGRYLKEPLKPRVVDELRPSSKAPS 387
>gi|420421649|ref|ZP_14920727.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
gi|393038167|gb|EJB39201.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
Length = 492
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 68/101 (67%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK+ D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|426197762|gb|EKV47689.1| hypothetical protein AGABI2DRAFT_185614 [Agaricus bisporus var.
bisporus H97]
Length = 433
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 15/188 (7%)
Query: 94 TEIVVAYCWSKGTFQSNASMTSFLFLLR-----PPVLLCLLCFRIRKDTHL--------- 139
TEI+ A + T+ +A+MT+ + L+ PV + + F+ + + L
Sbjct: 163 TEILRAIPRERSTYLFSATMTANVTKLQRASLTDPVRVDVSSFKYKTVSTLLQYYVLCPL 222
Query: 140 -DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+++ +L L+ ++ ++FV T +A + I+L L +A LHG L+Q RL +
Sbjct: 223 VNKEVMLVYLINSMAQNTIIVFVRTVADAKRLSIVLRTLEFQAVPLHGELSQSQRLGAFN 282
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+FK ++++L+ATD+A+RGLD+ V VINY P S + Y+HRVGRTARAG+ G S+ M
Sbjct: 283 RFKSGKSNILVATDLASRGLDVANVDVVINYDTPTSSKDYVHRVGRTARAGRAGKSILMV 342
Query: 259 GEVDRKLV 266
+ D +++
Sbjct: 343 SQYDAEVM 350
>gi|420447374|ref|ZP_14946266.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
gi|393062789|gb|EJB63637.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
Length = 492
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 481
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 11/130 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+R++ D +CR D ++F TKR E+ L G A +HG+
Sbjct: 222 RVRENEKFD-------TMCRLIDVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGD 274
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ R++ L++FK+ E D+L+ATDVAARGLDI GV V NY +P + Y+HR+GRT R
Sbjct: 275 LTQARRMQVLKRFKEGELDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 334
Query: 248 AGKGGVSVSM 257
AGK G+SV+
Sbjct: 335 AGKSGMSVTF 344
>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 419
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%)
Query: 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
ALL ++ R ++FV T+ + L GI + G++ Q +R ++L +F
Sbjct: 247 ALLCDILKREEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTK 306
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
E +VL+ATDVAARG+DI G+ VIN+ MP S + Y+HR+GRT RAG G ++S+ D
Sbjct: 307 GEVNVLLATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHD 366
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFP 295
++V ++ + + P+K R+I P+ K P
Sbjct: 367 MRVVAKIERYIEQPLKRRVIDSLRPKHKEAKVP 399
>gi|441205997|ref|ZP_20972788.1| DEAD-box ATP-dependent RNA helicase CshA [Mycobacterium smegmatis
MKD8]
gi|440628545|gb|ELQ90341.1| DEAD-box ATP-dependent RNA helicase CshA [Mycobacterium smegmatis
MKD8]
Length = 502
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 242 LDKVELVSRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 301
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAGK GV++++
Sbjct: 302 SFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITL 360
>gi|434386838|ref|YP_007097449.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
gi|428017828|gb|AFY93922.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
Length = 519
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 27/176 (15%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV T++ A E+ L G A E HG+LTQ R L +F+ ++ ++ATD+A
Sbjct: 245 ESAIIFVRTRKAAAELTNQLQSAGHSADEYHGDLTQTQRERLLTRFRSDKVRWIVATDIA 304
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P S+E+YIHR+GRT RAGK GV++S+ +DR+ ++ + + K
Sbjct: 305 ARGLDVDHLSHVINYDLPDSVENYIHRIGRTGRAGKEGVAISLIHSLDRRKLQAIERRVK 364
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA-----IEGEVQKILTEEK 325
+ IP RA+VEA I+G+VQ+ L+ E+
Sbjct: 365 QSLTVCQIPT----------------------RAQVEAAHVQKIQGKVQEALSGER 398
>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 478
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++FV TKREA + L G A +HG+ TQ R +LR FK T +++ATDVA+R
Sbjct: 230 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASR 289
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
GLD+ V VINY +P S+E Y+HR+GRT RAGK G + + E D L K +++
Sbjct: 290 GLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLE 344
>gi|125555969|gb|EAZ01575.1| hypothetical protein OsI_23609 [Oryza sativa Indica Group]
Length = 442
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++FV TKREA + L G A +HG+ TQ R +LR FK T +++ATDVA+R
Sbjct: 203 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASR 262
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK---QVIKNA 273
GLD+ V VINY +P S+E Y+HR+GRT RAGK G + + E D L K +++ A
Sbjct: 263 GLDVPNVAHVINYDLPKSVEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEA 322
Query: 274 KNPVKHRII 282
K V +I
Sbjct: 323 KQDVPDWLI 331
>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 481
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 11/130 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+R++ D +CR D ++F TKR E+ L G A +HG+
Sbjct: 222 RVRENEKFD-------TMCRLIDVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGD 274
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ R++ L++FK+ E D+L+ATDVAARGLDI GV V NY +P + Y+HR+GRT R
Sbjct: 275 LTQARRMQVLKRFKEGELDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 334
Query: 248 AGKGGVSVSM 257
AGK G+SV+
Sbjct: 335 AGKSGMSVTF 344
>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenobaculum
sp. Y04AAS1]
gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 364
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 71/110 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK++A ++ LL GI+A LHG+LTQ R ++L FK +LIATDVA
Sbjct: 241 EKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVA 300
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
ARGLDI+ V VINY +P E YIHR+GRT R GK G + S+ D K
Sbjct: 301 ARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSK 350
>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 507
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 245 LDKVEMVSRILQADGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALK 304
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK GV+V++
Sbjct: 305 SFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTL 363
>gi|399986307|ref|YP_006566656.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
gi|399230868|gb|AFP38361.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
Length = 514
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 254 LDKVELVSRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 313
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAGK GV++++
Sbjct: 314 SFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITL 372
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ +L L+ ++F T A +L +LG A LHG L+Q RL SL KF
Sbjct: 312 KNTILIHLLNEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKF 371
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K + ++L+ATDVAARGLDI V VINY +P + YIHRVGRTARAG+ G S+S+ +
Sbjct: 372 KSNQANILVATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 431
Query: 261 VDRKL 265
D ++
Sbjct: 432 YDLEM 436
>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
Length = 502
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 242 LDKVELVSRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALK 301
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAGK GV++++
Sbjct: 302 SFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITL 360
>gi|143456452|sp|Q0DB53.2|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
Length = 602
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++FV TKREA + L G A +HG+ TQ R +LR FK T +++ATDVA+R
Sbjct: 354 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASR 413
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
GLD+ V VINY +P S+E Y+HR+GRT RAGK G + + E D L K +++
Sbjct: 414 GLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLE 468
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ +L L+ ++F T A +L +LG A LHG L+Q RL SL KF
Sbjct: 294 KNTILIHLLNEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKF 353
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K ++LIATDVAARGLDI V VINY +P + YIHRVGRTARAG+ G S+S+ +
Sbjct: 354 KSNTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 413
Query: 261 VD 262
D
Sbjct: 414 YD 415
>gi|420433429|ref|ZP_14932437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|420507185|ref|ZP_15005698.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|420508875|ref|ZP_15007377.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|420532623|ref|ZP_15030986.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|420534186|ref|ZP_15032537.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|420535991|ref|ZP_15034333.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|420537697|ref|ZP_15036027.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|420539422|ref|ZP_15037741.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|420541180|ref|ZP_15039488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|420542703|ref|ZP_15040998.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
gi|393050957|gb|EJB51910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-24]
gi|393119266|gb|EJC19757.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24b]
gi|393120301|gb|EJC20790.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-24c]
gi|393140254|gb|EJC40627.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M1]
gi|393142409|gb|EJC42763.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M2]
gi|393143639|gb|EJC43983.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M3]
gi|393145252|gb|EJC45583.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M4]
gi|393147107|gb|EJC47432.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M5]
gi|393147800|gb|EJC48124.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M6]
gi|393159766|gb|EJC60015.1| ATP-dependent RNA helicase [Helicobacter pylori Hp M9]
Length = 491
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|343428869|emb|CBQ72414.1| probable DEAD box protein (putative RNA helicase) [Sporisorium
reilianum SRZ2]
Length = 568
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T ++ + ILL LLG A LHG L+Q +RL +L KFK +L+ATDVA+RG
Sbjct: 364 IVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRG 423
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI V V+NY +P + + YIHRVGRTARAG+ G SV++ + D +L++++
Sbjct: 424 LDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 475
>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
Length = 444
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L GI L G + Q R
Sbjct: 228 RADNIEHKTALLVHLLKQPEATRSIVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VLIATDVAARG+DI V VIN+ MP + + Y+HR+GRTARAG+ G
Sbjct: 288 NEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ +V + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPSTRAPS 387
>gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens]
Length = 439
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTALLIHLLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P+ K P+
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPKTKVPN 387
>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 507
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 245 LDKVEMVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALK 304
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK GV+V++
Sbjct: 305 SFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTL 363
>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 461
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ ++F TK + L +GI A +HGN +QP R +L +FK +T VL+ATDVA
Sbjct: 251 ERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKTPVLVATDVA 310
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
ARG+DI GV VINY +P+ E Y+HR+GRTARAG G++++ E +R+ +K + K
Sbjct: 311 ARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQYLKDIRKT 368
>gi|432437302|ref|ZP_19679690.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE188]
gi|432524775|ref|ZP_19761902.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE230]
gi|433213487|ref|ZP_20397077.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE99]
gi|430962633|gb|ELC80490.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE188]
gi|431051226|gb|ELD60901.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE230]
gi|431734512|gb|ELJ97913.1| ATP-dependent RNA helicase srmB [Escherichia coli KTE99]
Length = 444
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLLCLL-CFR 132
D F IE +T WSK T +A++ LL PV + R
Sbjct: 164 DMGFAQDIEHIAGETR------WSKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTR 217
Query: 133 IRKDTH--------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
RK H L+ K ALL L+ + +++FV + HE+ L GI
Sbjct: 218 ERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCY 277
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+G
Sbjct: 278 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 337
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RTARAG+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 338 RTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 387
>gi|418029930|ref|ZP_12668447.1| hypothetical protein LDBUL1632_01241 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354688393|gb|EHE88432.1| hypothetical protein LDBUL1632_01241 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 476
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 11/130 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+R++ D +CR D ++F TKR E+ L G A +HG+
Sbjct: 215 RVRENEKFD-------TMCRLIDVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGD 267
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ R++ L++FK+ E D+L+ATDVAARGLDI GV V NY +P + Y+HR+GRT R
Sbjct: 268 LTQARRMQVLKRFKEGELDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 327
Query: 248 AGKGGVSVSM 257
AGK G+SV+
Sbjct: 328 AGKSGMSVTF 337
>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
gi|113596046|dbj|BAF19920.1| Os06g0602400, partial [Oryza sativa Japonica Group]
Length = 484
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++FV TKREA + L G A +HG+ TQ R +LR FK T +++ATDVA+R
Sbjct: 236 TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASR 295
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
GLD+ V VINY +P S+E Y+HR+GRT RAGK G + + E D L K +++
Sbjct: 296 GLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLE 350
>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
Length = 532
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 149 VCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
+CR ++F TKR E+ L G A LHG+L+Q R +R+F+ E
Sbjct: 237 LCRILDISDISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSE 296
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
++L+ATDVAARGLDI GV VINY +P E Y+HR+GRT RAG+ GV++++ + +
Sbjct: 297 VELLVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYR 356
Query: 265 LVKQVIKNAKNPVKHRIIP 283
++Q+ K +K + +P
Sbjct: 357 QLRQIENITKTHIKRQKLP 375
>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
Length = 2578
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 78/112 (69%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR ++ ++L LG++A LHGN++Q R+ +L +FK + +VL+ T+V ARG
Sbjct: 2403 IIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVCTNVGARG 2462
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI+GV+ VINY +P + + Y+HRVGRTARAG+ G +V+ + D K++
Sbjct: 2463 LDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEI 2514
>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 533
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LL AL+ ++F TKR E+ LL G + LHG++ Q R +L++ ++
Sbjct: 235 LLDALLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREG 294
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
T VL+ATDVAARG+D+ + VIN+ +P E Y+HR+GRT RAG+ G++VS AG +
Sbjct: 295 RTRVLVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREG 354
Query: 264 KLVKQVIKNAKNPVKHRIIP 283
LVK + + N ++ +P
Sbjct: 355 GLVKNIERYTGNRIEVHTLP 374
>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 432
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL+ L+ + ++F T+ A ++ L L GI +HG Q SR +LR+F
Sbjct: 231 KRELLSELIGKKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREF 290
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ + VL+AT+VAARGLDI+G++ V+NY +P E Y+HR+GRT RAGK GV++S
Sbjct: 291 KEGKMRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSR 350
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ + + + K ++ RI PGY
Sbjct: 351 EEERTLADIEKLIGQQLR-RISIPGY 375
>gi|406027401|ref|YP_006726233.1| DEAD/DEAH box helicase [Lactobacillus buchneri CD034]
gi|405125890|gb|AFS00651.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus buchneri
CD034]
Length = 506
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 17/185 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA LHG+LTQ R + +++FK + D+L+ATDVAAR
Sbjct: 242 TIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+DI GV V NY +P + Y+HRVGRT RAGK GVS++ A + ++++ K
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEK----L 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R++P PP + E + ++ + E ++ ++ + D+ AD+
Sbjct: 358 TKVRMLP----------LKPPTIQE---AFVGQLNSAESDIADLIKKTNTDKYEKMADKL 404
Query: 337 VSKAE 341
+ + E
Sbjct: 405 LDEYE 409
>gi|104773512|ref|YP_618492.1| DEAD/DEAH box helicase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815106|ref|YP_005851497.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|418035206|ref|ZP_12673664.1| hypothetical protein LDBUL1519_00364 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|354690624|gb|EHE90568.1| hypothetical protein LDBUL1519_00364 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 483
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 11/130 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+R++ D +CR D ++F TKR E+ L G A +HG+
Sbjct: 222 RVRENEKFD-------TMCRLIDVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGD 274
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ R++ L++FK+ E D+L+ATDVAARGLDI GV V NY +P + Y+HR+GRT R
Sbjct: 275 LTQARRMQVLKRFKEGELDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 334
Query: 248 AGKGGVSVSM 257
AGK G+SV+
Sbjct: 335 AGKSGMSVTF 344
>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 460
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 11/190 (5%)
Query: 106 TFQSNASMTSFLFLLRPPVLLCL---------LCFRIRKDTHLDRKALLAALVCRTFKDH 156
TF+ N + F+ R PV + + + R+ ++ LL L+ + ++
Sbjct: 190 TFEENIKQLALEFM-RNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQ 248
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TK + ++ + L GIK +HGN +Q R+ +L FK VL+ATD+AAR
Sbjct: 249 TLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAAR 308
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+DI + VINY +P E Y+HR+GRT R G G ++S+ + + KL++Q+++
Sbjct: 309 GIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRD 368
Query: 277 VKHRIIPPGY 286
V+ R + PGY
Sbjct: 369 VEIRDV-PGY 377
>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 603
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++F K+EA + L GI+ G +HG+L Q R SL FK T VL+ATDVA
Sbjct: 440 DRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLVATDVA 499
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK---LVKQVIK 271
ARGLDI VK VIN P ++E Y+HR+GRT RAGK G ++++ E D+ + ++K
Sbjct: 500 ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTEHDKAHSGSLINILK 559
Query: 272 NAKNPV 277
AK PV
Sbjct: 560 GAKQPV 565
>gi|428208465|ref|YP_007092818.1| DEAD/DEAH box helicase [Chroococcidiopsis thermalis PCC 7203]
gi|428010386|gb|AFY88949.1| DEAD/DEAH box helicase domain protein [Chroococcidiopsis thermalis
PCC 7203]
Length = 482
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 83/129 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV T++ A ++ L G A E HG+LTQ +R L +F++++ +IATD+A
Sbjct: 243 ESAIIFVKTRKTAADLTSQLQASGYSADEYHGDLTQQARERLLSRFRNKQVRWVIATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ + VINY +P S+E Y+HR+GRT RAGK G ++S+ DR+ +Q+ ++ +
Sbjct: 303 ARGLDVDHLTHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLIQPFDRRKQQQIERHVR 362
Query: 275 NPVKHRIIP 283
+K +P
Sbjct: 363 QSLKVSYVP 371
>gi|393720931|ref|ZP_10340858.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 480
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+++ALL L+ + ++F TK A + LLG GI + +HGN +QP R +L +
Sbjct: 230 EKQALLTILLRDEKVERALVFTRTKHGADRVVKLLGANGIVSNAIHGNKSQPQRERALAE 289
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK + VL+ATD+AARG+D+ GV V N+ +P+ E Y+HR+GRTARAG G ++S
Sbjct: 290 FKSGKAKVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGASGTAISFVA 349
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ +R ++ + K + + +P G+
Sbjct: 350 DDERTYLRDIEKLTRVKPEMMQLPEGF 376
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 79/127 (62%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L L ++ MIF T +A ++ I+L LG A LHG L+Q RL +L KFK
Sbjct: 245 LVNLANTLAQNSMMIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGG 304
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
+L+ATDVA+RGLDI V VIN+ +P + YIHRVGRTARAG+ G S+++ + D +
Sbjct: 305 RSILVATDVASRGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDIE 364
Query: 265 LVKQVIK 271
L+ ++ K
Sbjct: 365 LIHRIEK 371
>gi|451943504|ref|YP_007464140.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902891|gb|AGF71778.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 411
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 77/121 (63%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
+D+ A+ A ++ + T+IF TKR A ++ L G G +HG++ QP+R SL+
Sbjct: 223 MDKPAVTARILQARGRGRTIIFARTKRTAADVAEELAGRGFAVGAVHGDMGQPARERSLK 282
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
F+D D+L+ATDVAARG+DI V VINY+ P Y+HR+GRT RAG G++V++
Sbjct: 283 AFRDGTVDILVATDVAARGIDITDVTHVINYQTPDDPMTYVHRIGRTGRAGHSGIAVTLV 342
Query: 259 G 259
G
Sbjct: 343 G 343
>gi|15603705|ref|NP_246779.1| ATP-dependent RNA helicase SrmB [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12722265|gb|AAK03924.1| SrmB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 442
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF------LLRPPVLL-CLLCFRIRK------ 135
+ +D E + A W K T +A++ L LL PV + R RK
Sbjct: 167 FGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTEPVQIDAEPSRRERKKIQQWY 226
Query: 136 ---DTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
D++ + LLA + ++FV + E E+ L GI++ L G + Q
Sbjct: 227 YHADSNEHKIKLLARFIDEEQVSRGIVFVRRREEVRELSETLRKRGIRSTYLEGEMAQTQ 286
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
R ++ K K+ VL+ATDVAARG+DI V V+N+ +P+S + Y+HR+GRTARAGK G
Sbjct: 287 RNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKG 346
Query: 253 VSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
V+VS D KL+ ++ + + +K RII PR K P
Sbjct: 347 VAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAP 386
>gi|389839956|ref|YP_006342040.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ES15]
gi|387850432|gb|AFJ98529.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ES15]
Length = 444
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLLCLL-CFR 132
D F IE +T W K T +A++ LL PV + R
Sbjct: 164 DMGFAQDIETIAGETR------WRKQTLLFSATLEGDAIKDFAERLLEEPVEVSATPSTR 217
Query: 133 IRKDTHL---------DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
RK H + ALL L+ + +++FV + HE+ L GI
Sbjct: 218 ERKKIHQWYYRADNIEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCY 277
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q R E++++ D +VLIATDVAARG+DI V V NY MP + + Y+HR+G
Sbjct: 278 LEGEMVQVKRNEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVFNYDMPRTADTYLHRIG 337
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RT RAG+ G ++S+ D L+ +V + K P+K R+I P + PS
Sbjct: 338 RTGRAGRKGTAISLVEAHDHLLLGKVGRYLKEPLKARVIDELRPTTRAPS 387
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 67/105 (63%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T +L +LG A LHG LTQ RL SL KFK + ++LIATDVAARG
Sbjct: 307 IVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARG 366
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V VINY +P + YIHRVGRTARAGK G S+S+ + D
Sbjct: 367 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYD 411
>gi|333928701|ref|YP_004502280.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333933654|ref|YP_004507232.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386330524|ref|YP_006026694.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|421785069|ref|ZP_16221503.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica A30]
gi|333475261|gb|AEF46971.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333492761|gb|AEF51923.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333962857|gb|AEG29630.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
gi|407752786|gb|EKF62935.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica A30]
Length = 441
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLL----------CLL 129
D F IE + +T T + +A +L+ PV + +L
Sbjct: 164 DMGFAQDIETISAETRWRNQTLLFSATLEGDAIREFAERILKEPVEIEADPSRRERKKIL 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + A+L L+ + ++IFV + HE+ L GI L G +
Sbjct: 224 QWYYRADDVQHKTAILVHLLQQPDVLKSVIFVRKRERVHELAAWLREAGINTCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VL+ATDVAARGLDI + V N+ MP + + Y+HR+GRT RAG
Sbjct: 284 QAKRNEAVKRMMDGRVNVLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + P+K R+I P K PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPSTKVPS 387
>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 449
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 93/163 (57%)
Query: 131 FRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190
+ R D + ALL L+ + ++IFV + AHE+ L IK L G + Q
Sbjct: 232 YYYRADNLEHKTALLCHLLKQPDASKSIIFVRKRERAHELVQWLQQANIKTWLLEGEMVQ 291
Query: 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250
R E++++ + +VL+ATDVA+RGLDI + V N+ +P + + Y+HR+GRTARAG+
Sbjct: 292 AKRTEAVKRLNSGQINVLVATDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGR 351
Query: 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
G+++S+ D+ L+ ++ + P+K R+I P K PS
Sbjct: 352 KGIAISLVEAHDQPLLGKINRYLNEPLKIRVIDSLRPTTKAPS 394
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 246 IIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 305
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V NY +P E Y+HR+GRT RAGK G++++
Sbjct: 306 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 344
>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
Length = 444
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNSYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 387
>gi|417748952|ref|ZP_12397364.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 505
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L++ ++ + TM+F TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 247 LDKVELVSRVLQAESRGATMLFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALK 306
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ + DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT RAGK GV+V++
Sbjct: 307 AFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTL 365
>gi|408410488|ref|ZP_11181699.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|408410709|ref|ZP_11181911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|409351244|ref|ZP_11234042.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
gi|407875110|emb|CCK83717.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407875331|emb|CCK83505.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407876877|emb|CCK86100.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
Length = 483
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 11/130 (8%)
Query: 132 RIRKDTHLDRKALLAALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGN 187
R+R++ D ++CR D ++F TKR E+ L G A +HG+
Sbjct: 220 RVRENEKFD-------IMCRLIDVENPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGD 272
Query: 188 LTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
LTQ R++ L++FK+ + D+L+ATDVAARGLDI GV V NY +P + Y+HR+GRT R
Sbjct: 273 LTQAKRMQVLKRFKEGKLDILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGR 332
Query: 248 AGKGGVSVSM 257
AGK G+SV+
Sbjct: 333 AGKTGMSVTF 342
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 68/100 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L + G A +HG+LTQ R+ LR+FKD + DVL+ATDVAARG
Sbjct: 269 IVFGRTKRRVDELAHALSIRGYLAEGIHGDLTQAKRMSVLRQFKDNKIDVLVATDVAARG 328
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
LDI GV V N+ +P E Y+HR+GRT RAGK G++++
Sbjct: 329 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITF 368
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 67/105 (63%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T +L +LG A LHG LTQ RL SL KFK + ++LIATDVAARG
Sbjct: 307 IVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARG 366
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V VINY +P + YIHRVGRTARAGK G S+S+ + D
Sbjct: 367 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYD 411
>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase [Methanocaldococcus fervens AG86]
gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
AG86]
Length = 362
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 149 VCRTFKD---HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET 205
+CR KD + ++F TK++ ++ +L +G KAG +HG+L Q R + +R FK ++
Sbjct: 225 LCRILKDREFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKI 284
Query: 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL 265
+LIATDV +RG+D+ + VINY +P + E Y+HR+GRT RAGK G+++S+ + +
Sbjct: 285 KILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYRK 344
Query: 266 VKQV 269
+K +
Sbjct: 345 LKHI 348
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 68/105 (64%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF T + +L +LG A LHG LTQ RL SL KFK + ++LIATDVAARG
Sbjct: 308 IIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVAARG 367
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V VINY +P + YIHRVGRTARAGK G S+S+ + D
Sbjct: 368 LDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYD 412
>gi|407697074|ref|YP_006821862.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407254412|gb|AFT71519.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 454
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ ALL L+ ++F TK A+ + L GI+A +HGN +Q +R +L F
Sbjct: 231 KAALLTHLIGEQQWFQVLVFTRTKHGANRLAKQLESAGIEAVAIHGNKSQNARTRALAGF 290
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K + L+ATD+AARGLDI + V+N+ +P+ E Y+HR+GRT RAG G +VS+
Sbjct: 291 KSGDVRALVATDIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGADGEAVSLVSG 350
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK 305
D+KL+K + + K P++ R + +F PP +A+I D+
Sbjct: 351 EDQKLLKGIERLIKQPIERR---------QVDNFEPPAVADIPDE 386
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L + G A +HG+L+Q RL LR+FK+ + DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSHALSIRGYIAEGIHGDLSQAKRLSVLRQFKENKIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y+HR+GRT RAGK GV+V+ + +
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMSYL----------- 352
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK 319
RI+ + TP PP +V + VE ++ V+K
Sbjct: 353 --RIVEETTKKRMTPLKPPTADEALVGQQEVAVEQLKAIVEK 392
>gi|380488521|emb|CCF37316.1| ATP-dependent RNA helicase DBP3, partial [Colletotrichum
higginsianum]
Length = 521
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++F K+EA + L GI+ G +HG+L Q R SL FK T VL+ATDVA
Sbjct: 358 DRILVFCLYKKEATRVETFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLVATDVA 417
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK---LVKQVIK 271
ARGLDI VK VIN P ++E Y+HR+GRT RAGK G ++++ E D+ + ++K
Sbjct: 418 ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTEHDKAHSGSLINILK 477
Query: 272 NAKNPV 277
AK PV
Sbjct: 478 GAKQPV 483
>gi|377556172|ref|ZP_09785893.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
gi|376168726|gb|EHS87461.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
Length = 498
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D T++F TKR E+ L G A +HG+LTQ R + +++FK+ E D+L+ATDVA
Sbjct: 240 DLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMKRFKNGELDILVATDVA 299
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLDI GV V NY +P E Y+HR+GRT RAG GVS++ + + ++ K
Sbjct: 300 ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGNHGVSLTFVTPNEMDYLHEIEK--- 356
Query: 275 NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKAD 334
K R++P LK PP AE + +R +V + ++ +++ +DR A
Sbjct: 357 -LTKVRMLP-----LK------PPTAE--EAFRGQVASAFNDINELIERPDNDRYREAAS 402
Query: 335 EQVSKAE 341
E ++ E
Sbjct: 403 ELLATHE 409
>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase [Lactobacillus buchneri NRRL B-30929]
gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 506
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 17/185 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G KA LHG+LTQ R + +++FK + D+L+ATDVAAR
Sbjct: 242 TIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+DI GV V NY +P + Y+HRVGRT RAGK GVS++ A + ++++ K
Sbjct: 302 GIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEK----L 357
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336
K R++P PP + E + ++ + E ++ ++ + D+ AD+
Sbjct: 358 TKVRMLP----------LKPPTIQE---AFVGQLNSAESDIADLIKKTNTDKYEKMADKL 404
Query: 337 VSKAE 341
+ + E
Sbjct: 405 LDEYE 409
>gi|385221749|ref|YP_005770882.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
Length = 494
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 369
>gi|429961580|gb|ELA41125.1| hypothetical protein VICG_01824 [Vittaforma corneae ATCC 50505]
Length = 454
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 6/129 (4%)
Query: 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213
+D +IFV K AHE+ + L G LHG+ QP R +L KFK E ++L+AT V
Sbjct: 263 EDKLLIFVQMKVTAHELEGKIRLWGYPVVSLHGDKLQPDRQSALNKFKRGEVNILVATSV 322
Query: 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS-----MAGEVDRKLVKQ 268
AARG+D++ +KTVINY P+ ++ YIHR+GRT R G+ G ++S +A E+ +LV
Sbjct: 323 AARGIDVQDIKTVINYDFPNDIKEYIHRIGRTGRQGRSGCALSFISGDIAPEIKSELV-D 381
Query: 269 VIKNAKNPV 277
++K ++N +
Sbjct: 382 ILKESRNDI 390
>gi|386750015|ref|YP_006223222.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
gi|384556258|gb|AFI04592.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
Length = 513
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IF TK+EA+E++ +L K LHG++ Q R S+ FK E DVL+ATDVA+R
Sbjct: 278 SIIFTRTKKEANELNQILNAKNYKCTALHGDMEQRERRASIMAFKKNEVDVLVATDVASR 337
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI V V NY +P + E YIHR+GRT RAGK GV++++ ++ K
Sbjct: 338 GLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYK 385
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 147 ALVCRTFKD----HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
AL+ F D ++F TK A ++ L G++AG +HGN +QP R +L FK
Sbjct: 248 ALLTEMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKK 307
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
+ VL+ATD+AARG+D+ GV V+N+ +PH E Y+HR+GRTARAG G ++S +
Sbjct: 308 GKLRVLVATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDE 367
Query: 263 RKLVKQVIK 271
KL+K + K
Sbjct: 368 MKLLKDIEK 376
>gi|407982755|ref|ZP_11163421.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
gi|407375643|gb|EKF24593.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
Length = 517
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ L G KA +HG+L Q +R ++L+
Sbjct: 241 LDKVEMISRILQAEGRGATMIFTRTKRTAQKVADELAERGFKAAAVHGDLGQGAREKALQ 300
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI V VINY++P + Y+HR+GRT R GK GV+V++
Sbjct: 301 AFRTGEIDVLVATDVAARGIDIEDVTHVINYQIPEDEQSYVHRIGRTGRKGKAGVAVTL 359
>gi|420106291|ref|ZP_14616706.1| ATP-dependent RNA helicase SrmB, partial [Escherichia coli O111:H11
str. CVM9553]
gi|394416566|gb|EJE90352.1| ATP-dependent RNA helicase SrmB, partial [Escherichia coli O111:H11
str. CVM9553]
Length = 304
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 24 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 83
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 84 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 143
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 144 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 203
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 204 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 247
>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides KD131]
gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
WS8N]
gi|429206050|ref|ZP_19197318.1| ATP-dependent RNA helicase RhlE [Rhodobacter sp. AKP1]
gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
KD131]
gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
WS8N]
gi|428190771|gb|EKX59315.1| ATP-dependent RNA helicase RhlE [Rhodobacter sp. AKP1]
Length = 453
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 85/138 (61%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL + + + + ++F TK + ++ LL G KAG +HGN +Q R +L +
Sbjct: 231 DKAKLLESYLQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTE 290
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+D DVL+ATDVAARG+DI GV+ V NY MP+ E+Y+HR+GRTARAG G +V+
Sbjct: 291 FRDGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVA 350
Query: 260 EVDRKLVKQVIKNAKNPV 277
+ + + V K K P+
Sbjct: 351 PAEMEEFRAVEKLLKQPI 368
>gi|433544706|ref|ZP_20501082.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432183978|gb|ELK41503.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 530
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 81/129 (62%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T+ ++ L G+ A L+G+L+Q R + +R+F++ L+ATD+AAR
Sbjct: 244 TIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQFREMRFQYLVATDIAAR 303
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLD+ GV VINY +P+ +E YIHRVGRT RAG+ G ++S+ + L+ + K K
Sbjct: 304 GLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSGKAISLISPRQKNLMGRFAKATKAS 363
Query: 277 VKHRIIPPG 285
++ RI+ PG
Sbjct: 364 IEERILEPG 372
>gi|401764797|ref|YP_006579804.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400176331|gb|AFP71180.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 442
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L++++ + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLQKIGRYVDEPLKSRVIDGLRPTTRAPS 387
>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
Length = 454
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TK A +++ L LG ELHG++ Q R ++ F++ + LIATDVAARG
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LD+ GV V NY +P +E YIHR+GRT RAG G++++ D K ++++ K P+
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPI 367
Query: 278 KHRII-PPGYPRLKTPSFPPPPLA 300
+ II P R+ P P LA
Sbjct: 368 QREIIEQPKIKRVDENGKPVPKLA 391
>gi|419019504|ref|ZP_13566810.1| srmB, DEAD-box RNA helicase [Escherichia coli DEC1E]
gi|377859507|gb|EHU24338.1| srmB, DEAD-box RNA helicase [Escherichia coli DEC1E]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE+ +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEQIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 344 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 387
>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
Length = 494
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 369
>gi|375107094|ref|ZP_09753355.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374667825|gb|EHR72610.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 457
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 89/163 (54%)
Query: 136 DTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
D L + LL L+ D ++F T+R+A E+ L +G LHG + Q R
Sbjct: 260 DGMLHKHKLLEHLLADRDLDQAVVFTATQRDADEVADKLAQIGHAVAALHGGMPQGRRTR 319
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
L + VL+ATDVAARG+D+ G+ VIN+ +P E Y+HR+GRT RAG+ G+++
Sbjct: 320 VLNALRMGHLRVLVATDVAARGIDVPGITHVINHGLPMKAEDYVHRIGRTGRAGRNGMAI 379
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPP 298
++A D +V+++ + P+ +IP PRL S P P
Sbjct: 380 TLAERRDTGMVRRIERFTTQPIATAVIPGLEPRLPAASERPAP 422
>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
Length = 567
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++FV TKREA + L G A +HG+ TQ R +L+ FK T +++ATDVA+R
Sbjct: 330 TLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQERESALKSFKSGTTPIMVATDVASR 389
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
GLD+ V VINY +P S+E Y+HR+GRT RAGK G++ + E + L K +++
Sbjct: 390 GLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGIATAFFTESNHPLAKGLLE 444
>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 398
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 140 DRKAL--LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
DRK L L ++ T +IF T R ++H+ L G ELHG+L+Q R +
Sbjct: 227 DRKKLQALVEVIKETQPFMGIIFCRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVM 286
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
++F+D + +LIATDVAARGLD+ GV V NY +P +E YIHR+GRT RAG+ G++++
Sbjct: 287 KRFRDAKIQLLIATDVAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITF 346
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRII 282
+ D++ ++ + + K + +I+
Sbjct: 347 SALKDKQALQSLEEGIKRSIPRKIV 371
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L + G A +HG+L+Q RL LR+FK+ + DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSHALSIRGYVAEGIHGDLSQAKRLSVLRQFKENKIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V N+ +P E Y+HR+GRT RAGK GV+V+
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVT 342
>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 526
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 246 IIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 305
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V NY +P E Y+HR+GRT RAGK G++++
Sbjct: 306 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 344
>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
Length = 461
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 85/138 (61%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL + + + + ++F TK + ++ LL G KAG +HGN +Q R +L +
Sbjct: 239 DKAKLLESYLQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTE 298
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+D DVL+ATDVAARG+DI GV+ V NY MP+ E+Y+HR+GRTARAG G +V+
Sbjct: 299 FRDGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVA 358
Query: 260 EVDRKLVKQVIKNAKNPV 277
+ + + V K K P+
Sbjct: 359 PAEMEEFRAVEKLLKQPI 376
>gi|422418363|ref|ZP_16495318.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
Length = 526
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 246 IIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 305
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V NY +P E Y+HR+GRT RAGK G++++
Sbjct: 306 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 344
>gi|419874619|ref|ZP_14396535.1| ATP-dependent RNA helicase SrmB, partial [Escherichia coli O111:H11
str. CVM9534]
gi|388350632|gb|EIL15984.1| ATP-dependent RNA helicase SrmB, partial [Escherichia coli O111:H11
str. CVM9534]
Length = 313
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 33 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 92
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 93 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 152
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 153 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 212
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 213 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 256
>gi|422421497|ref|ZP_16498450.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
Length = 525
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 244 IIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V NY +P E Y+HR+GRT RAGK G++++
Sbjct: 304 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 342
>gi|398790627|ref|ZP_10551602.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398218233|gb|EJN04744.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 442
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLL------- 126
D F IE +T W K T +A++ LL PV +
Sbjct: 164 DMGFAQDIETIAAETR------WRKQTLLFSATLEGDHIKDFAERLLNEPVFIEADPSKS 217
Query: 127 ---CLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
+ + R D + LL L+ + ++FV + HE+ L GI+
Sbjct: 218 ERKKIQQWYYRADDLQHKNKLLIHLLKQPDATRVIVFVRKRERLHELVTWLHEAGIRTSY 277
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q +R E++++ D V+IATDVAARG+DI + VINY +P + + Y+HR+G
Sbjct: 278 LEGEMVQVNRNEAIKRMNDGRVTVMIATDVAARGIDIDDISHVINYDLPRTADTYLHRIG 337
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RTARAG+ G ++S+ D L+ ++ + P+K R+I P + PS
Sbjct: 338 RTARAGRKGTAISLVEAHDHVLLGKITRYINEPLKARVIDELRPESRAPS 387
>gi|358395117|gb|EHK44510.1| hypothetical protein TRIATDRAFT_300672 [Trichoderma atroviride IMI
206040]
Length = 498
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++F K+EA + LG G++ G +HG+L Q R SL FK +T VL+ATDVA
Sbjct: 335 DRILVFCLYKKEATRVEGFLGRKGVRVGGIHGDLKQEQRTRSLEAFKSGKTPVLVATDVA 394
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK---LVKQVIK 271
ARGLDI VK VIN P ++E Y+HR+GRT RAGK G +++M D+ + ++K
Sbjct: 395 ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITMFTIQDKAHSGSLINILK 454
Query: 272 NAKNPVKHRIIPPG 285
A PV ++ G
Sbjct: 455 GANQPVPDELMKFG 468
>gi|423551771|ref|ZP_17528098.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
gi|401187609|gb|EJQ94682.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
Length = 454
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TK A +++ L LG ELHG++ Q R ++ F++ + LIATDVAARG
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LD+ GV V NY +P +E YIHR+GRT RAG G++++ D K ++++ K P+
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPI 367
Query: 278 KHRII-PPGYPRLKTPSFPPPPLA 300
+ II P R+ P P LA
Sbjct: 368 QREIIEQPKIKRVDENGKPVPKLA 391
>gi|388856716|emb|CCF49676.1| probable DEAD box protein (putative RNA helicase) [Ustilago hordei]
Length = 556
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T ++ + ILL LLG A LHG L+Q +RL +L KFK +L+ATDVA+RG
Sbjct: 352 IVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRG 411
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI V V+NY +P + + YIHRVGRTARAG+ G SV++ + D +L++++
Sbjct: 412 LDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 463
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 136 DTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLE 195
+TH R +L L+ T+IF TKR A ++ L + G+ A +HGN +Q R
Sbjct: 228 ETHRKRD-ILVDLLADAKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRER 286
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV 255
SL F+ L+ATD+AARG+D+ GV V+N+ +P E Y+HR+GRTARAG GV++
Sbjct: 287 SLASFRAGRVRALVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAI 346
Query: 256 SMAGEVDRKLVKQV--IKNAKNPVKHRIIPPGYPRLKTP 292
S+ +R L++ + + + P + R PG P + P
Sbjct: 347 SLCDGAERDLLRNIERLTRLRLPTEDRRAAPGSPESRPP 385
>gi|420408247|ref|ZP_14907406.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
gi|393025732|gb|EJB26838.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
Length = 492
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLVSKNYKSTALHGDMDQRDRRASVMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V NY +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|437972405|ref|ZP_20852850.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|435339369|gb|ELP08334.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
Length = 339
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 59 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIH 118
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 119 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 178
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 179 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 238
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 239 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 282
>gi|393768781|ref|ZP_10357313.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
gi|392725793|gb|EIZ83126.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
Length = 575
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ALLA ++ D ++F TK A + L +GI +HGN +QP R +L+ F
Sbjct: 296 KQALLAHILRDPAIDRVLVFTRTKHGADRVVRGLDKVGIAGAAIHGNKSQPQRERALQAF 355
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+D + VL+ATD+AARG+D+ GV V+N+ +P+ E Y+HR+GRTARAG G+++S +
Sbjct: 356 RDGDCRVLVATDIAARGIDVDGVSHVVNFDLPNVPESYVHRIGRTARAGATGLAISFCND 415
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
+R ++ + + + V P G F PP E D
Sbjct: 416 EERAYLRDIERLTRQSVPVAGFPEG--------FTPPSRQEAAD 451
>gi|413934954|gb|AFW69505.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 432
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ L ++ + MIFV T + ++L LG+KA + G ++Q RL +L +
Sbjct: 227 DKDCYLLHVLNERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNR 286
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK ++ ++LI TDVA+RGLDI+GV VINY +P + + Y+HRVGRTARAG+ G +VS+
Sbjct: 287 FKAKDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVN 346
Query: 260 EVDRK---LVKQVI 270
+ + + L++Q++
Sbjct: 347 QYEAQWFVLIEQLL 360
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|378958410|ref|YP_005215896.1| ATP-dependent RNA helicase srmB [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|374352282|gb|AEZ44043.1| ATP-dependent RNA helicase srmB [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|345877637|ref|ZP_08829378.1| 10 kDa chaperonin [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344225308|gb|EGV51670.1| 10 kDa chaperonin [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 462
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + R +L L+ + + ++F TKRE E+ L LG A LHG+L Q +R
Sbjct: 223 RVDANTQRMTILQLLLLKYRPESALVFCNTKRETQEVADELHDLGFSALALHGDLEQKAR 282
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
++L +F ++ +L+ATDVA+RGLDI + VINY + LE ++HR+GRT RAG G+
Sbjct: 283 DQTLVRFANKSASILVATDVASRGLDIDALDAVINYHLSRELEVHVHRIGRTGRAGSKGI 342
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
+ ++ + +R V+ + + + +PP + L+ P++ PP + +D
Sbjct: 343 ACTLYNDKERYKVEALEEYLDQRIVASPLPP-FSLLEQPTYKPPMVTLQID 392
>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 477
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 80/129 (62%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D ++IF K+E + L G A LHG++ Q R ++R FK+ + ++LIATDVA
Sbjct: 237 DKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILIATDVA 296
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274
ARGLD+ V V NY +P E Y+HR+GRT RAG+ G ++S+ + + ++++ K+
Sbjct: 297 ARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRIQKSVG 356
Query: 275 NPVKHRIIP 283
+ ++ RIIP
Sbjct: 357 SSIESRIIP 365
>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 442
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 81/137 (59%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++FV + HE+ L GI+ L G + Q R E+L++ D +VL+ATDVAAR
Sbjct: 251 SIVFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVNVLVATDVAAR 310
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
G+DI V V NY MP + + Y+HR+GRTARAG+ G+++S+ D L+ ++ + P
Sbjct: 311 GIDIEDVSHVFNYDMPRTADIYLHRIGRTARAGRKGIALSLVEAHDHVLLGKISRYINEP 370
Query: 277 VKHRIIPPGYPRLKTPS 293
+K R I P + PS
Sbjct: 371 LKSRTIDELRPESRAPS 387
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|421449652|ref|ZP_15899034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396069160|gb|EJI77500.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAKRLLEDPVEVSANPSTRERKKIH 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 224 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMI-FVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191
+ KDT+L +C F T+I F T E + ILL LG+ A LHG L+Q
Sbjct: 287 MHKDTYL-------IYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQS 339
Query: 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251
+RL +L KF+ ++L+ATDVAARGLDI V V+N+ +P + Y+HRVGRTARAGK
Sbjct: 340 ARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKS 399
Query: 252 GVSVSMAGEVD 262
G ++S+ + D
Sbjct: 400 GHAISIVTQYD 410
>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
Length = 698
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IFV K+ A + L +G +A LHG +Q R +L + KD+ D+L+ATDVA RG
Sbjct: 548 IIFVNQKKGADVLTKSLEKMGYRASALHGGKSQDLRERALSQLKDKTKDILVATDVAGRG 607
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL---VKQVIKNAK 274
+DI+G+ VINY M ++E Y HR+GRT RAG GV+V+ E D K+ +K+++K++K
Sbjct: 608 IDIKGISMVINYDMAKNIEDYTHRIGRTGRAGSSGVAVTFLTEEDSKVFWDLKEMLKSSK 667
Query: 275 NPV 277
N V
Sbjct: 668 NSV 670
>gi|419859243|ref|ZP_14381898.1| superfamily II DNA/RNA helicase [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410496792|gb|EKP88271.1| superfamily II DNA/RNA helicase [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 521
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 243 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 302
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 303 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TKR E+ L L G A +HG+LTQ R+ +LRKFK+ DVL+ATDVAAR
Sbjct: 244 SIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAAR 303
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V N+ +P E Y+HR+GRT RAG+ G++++ ++ +++ + + K
Sbjct: 304 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQTTKRK 363
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
+ R+K P+ EAIEG+ Q
Sbjct: 364 MD---------RMKEPTLD---------------EAIEGQQQ 381
>gi|417384980|ref|ZP_12150174.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353607158|gb|EHC61159.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 224 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|213161891|ref|ZP_03347601.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 346
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLLC------ 127
D F IE +T W K T +A++ LL PV +
Sbjct: 66 DMGFAQDIEHIAGETR------WRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTR 119
Query: 128 ----LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
+ + R D + ALL L+ + +++FV + HE+ L L GI
Sbjct: 120 ERKKIHQWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCY 179
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+G
Sbjct: 180 LEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIG 239
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RT RAG+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 240 RTGRAGRKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 289
>gi|418790794|ref|ZP_13346563.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392756830|gb|EJA13724.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
Length = 427
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|437888178|ref|ZP_20849170.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435328482|gb|ELP00023.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 338
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 58 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIH 117
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 118 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 177
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 178 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 237
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 238 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 281
>gi|15668850|ref|NP_247653.1| DEAD/DEAH box helicase [Methanocaldococcus jannaschii DSM 2661]
gi|2500540|sp|Q58083.1|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 367
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 149 VCRTFKD---HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET 205
+CR K+ + ++F TKR+ E+ +L +G KAG +HG+L+Q R + +R FK ++
Sbjct: 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289
Query: 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+LIATDV +RG+D+ + VINY +P + E Y+HR+GRT RAGK G ++S+
Sbjct: 290 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 341
>gi|421473380|ref|ZP_15921497.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400221128|gb|EJO51613.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 456
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR LL L+ D +IF TK +A ++ L G ++ LHG+L Q +R ++
Sbjct: 282 HKDR--LLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTI 339
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
R ++ VL+ATDVAARG+DI G+ V NY +P E Y+HR+GRT RAG+ G++VS+
Sbjct: 340 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 399
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++ +K++ + ++P+ +I PR KTP
Sbjct: 400 VHHAEQGALKRIERFVRSPLPVNVIEGFEPR-KTP 433
>gi|393246565|gb|EJD54074.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 595
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 74/127 (58%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T+IF R A + LL LG++A LH LTQ RL SL FK VL+ TD+ AR
Sbjct: 419 TIIFTARARSAAYLSELLQTLGVRATALHSRLTQRQRLNSLALFKSCVVPVLVCTDIGAR 478
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI V V+N+ MP E Y HRVGRTARAG+GGVSVS E D + V ++ K
Sbjct: 479 GLDIDDVALVLNWDMPQEPEEYTHRVGRTARAGRGGVSVSFVTERDEEKVLKIEGRIKTK 538
Query: 277 VKHRIIP 283
++ +P
Sbjct: 539 LEEMTMP 545
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 67/105 (63%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T A +L +LG A LHG L+Q RL SL KFK ++LIATDVAARG
Sbjct: 306 IVFTRTVAHAQRTALLCRILGFNAVPLHGQLSQAQRLGSLNKFKSRSANILIATDVAARG 365
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
LDI V VINY +P + YIHRVGRTARAG+ G S+S+ + D
Sbjct: 366 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 410
>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 462
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++F TK + ++ + L GIK +HGN +Q R+ +L F
Sbjct: 233 KRDLLLHLLAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDF 292
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 293 KAGRVTVLVATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQ 352
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ KL++Q+++ V+ R + PGY
Sbjct: 353 DEAKLLRQIVRMLGRDVEIRDV-PGY 377
>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
gi|419758389|ref|ZP_14284706.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB304]
gi|419856597|ref|ZP_14379318.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB202]
gi|421184782|ref|ZP_15642198.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB318]
gi|421188194|ref|ZP_15645533.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB419]
gi|421192791|ref|ZP_15650044.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB553]
gi|421195104|ref|ZP_15652316.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB568]
gi|421196973|ref|ZP_15654154.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB576]
gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
gi|399905011|gb|EJN92462.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB304]
gi|399965751|gb|EJO00317.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB419]
gi|399966384|gb|EJO00933.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB318]
gi|399974369|gb|EJO08532.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB553]
gi|399976292|gb|EJO10318.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB576]
gi|399976888|gb|EJO10901.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB568]
gi|410499642|gb|EKP91073.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB202]
Length = 521
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 243 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 302
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 303 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349
>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
Length = 399
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ +L L+ ++F T A +L +LG A LHG L+Q RL SL KF
Sbjct: 209 KNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKF 268
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K + ++L+ATDVAARGLDI V VINY +P + YIHRVGRTARAG+ G S+S+ +
Sbjct: 269 KSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 328
Query: 261 VDRKL 265
D ++
Sbjct: 329 YDLEM 333
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 135 KDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
KDTHL +V +IF T +A + I+L LG A LHG ++Q RL
Sbjct: 272 KDTHL------LYIVTELSSCSMIIFTRTVVDAQRLSIMLRRLGFPAIPLHGQMSQSLRL 325
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
SL KFK +L+ATDVA+RGLDI V V+NY MP + + Y+HRVGRTARAG+ G S
Sbjct: 326 ASLNKFKSGGRSILVATDVASRGLDIPLVDLVVNYDMPINSKDYVHRVGRTARAGRSGKS 385
Query: 255 VSMAGEVDRKLVKQV 269
++M + D ++++++
Sbjct: 386 ITMVTQYDVEILQRI 400
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
+ +L L+ ++F T A +L +LG A LHG L+Q RL SL KF
Sbjct: 297 KNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKF 356
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K + ++L+ATDVAARGLDI V VINY +P + YIHRVGRTARAG+ G S+S+ +
Sbjct: 357 KSSKANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 416
Query: 261 VDRKL 265
D ++
Sbjct: 417 YDLEM 421
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|345863069|ref|ZP_08815282.1| ATP-independent RNA helicase DbpA [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125952|gb|EGW55819.1| ATP-independent RNA helicase DbpA [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 462
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + R +L L+ + + ++F TKRE E+ L LG A LHG+L Q +R
Sbjct: 223 RVDANTQRMTILQLLLLKYRPESALVFCNTKRETQEVADELHDLGFSALALHGDLEQKAR 282
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
++L +F ++ +L+ATDVA+RGLDI + VINY + LE ++HR+GRT RAG G+
Sbjct: 283 DQTLVRFANKSASILVATDVASRGLDIDALDAVINYHLSRELEVHVHRIGRTGRAGSKGI 342
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVD 304
+ ++ + +R V+ + + + +PP + L+ P++ PP + +D
Sbjct: 343 ACTLYNDKERYKVEALEEYLDQRIVASPLPP-FSLLEQPTYKPPMVTLQID 392
>gi|397164701|ref|ZP_10488156.1| ATP-dependent RNA helicase SrmB [Enterobacter radicincitans DSM
16656]
gi|396093849|gb|EJI91404.1| ATP-dependent RNA helicase SrmB [Enterobacter radicincitans DSM
16656]
Length = 442
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKNFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 224 QWYYRADNLEHKTALLIHLLKQPEVSRSIVFVRKRERVHELAGWLREAGINNCYLEGEMV 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ D +VLIATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QVKRNEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R++ P + PS
Sbjct: 344 RKGAAISLVEAHDHLLLGKVGRYVEEPLKARVVDELRPTTRVPS 387
>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 454
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+IF TK A +++ L LG ELHG++ Q R ++ F++ + LIATDVAARG
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LD+ GV V NY +P +E YIHR+GRT RAG G++++ D K ++++ K P+
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPI 367
Query: 278 KHRII-PPGYPRLKTPSFPPPPLA 300
+ II P R+ P P LA
Sbjct: 368 QREIIEQPKIKRVDKNGKPVPRLA 391
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TKR E+ L L G A +HG+LTQ R+ +LRKFK+ DVL+ATDVAAR
Sbjct: 261 SIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAAR 320
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V N+ +P E Y+HR+GRT RAG+ G++++ ++ +++ + + K
Sbjct: 321 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQTTKRK 380
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
+ R+K P+ EAIEG+ Q
Sbjct: 381 MD---------RMKEPTLD---------------EAIEGQQQ 398
>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 442
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 164 DMGFAQDIEHIAGETRWRNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIH 223
Query: 139 --------LDRKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K LL L+ + T++FV + HE+ +L GI L G +
Sbjct: 224 QWYYRADNLEHKVELLKHLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QIKRTEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L++++ + P+K R++ P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLQKIGRYIDEPLKSRVVDGLRPTTRAPS 387
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 415
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 76/118 (64%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IF TK A + L GI A +HGN +QP R +L +F+ +T +L+ATDVA
Sbjct: 251 ERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKTMILVATDVA 310
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272
ARG+DI GV V+NY +P+ E Y+HR+GRTARAGK GV+++ E +R +K + K
Sbjct: 311 ARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAYLKDIRKT 368
>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 72/108 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TK+EA E+H L K+ LHG++ Q R S+ FK + DVL+ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
GLDI GV V +Y +P + E YIHR+GRT RAGK G+++++ ++ K
Sbjct: 320 GLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYK 367
>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
31758]
gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
31758]
gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
YPIII]
Length = 441
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLF------LLRPPVLL------- 126
D F IE + +T W K T +A++ +L PV L
Sbjct: 164 DMGFAQDIETISAETR------WRKQTLLFSATLEGEAIREFAERILNEPVELEADPSRR 217
Query: 127 ---CLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGE 183
+ + R D + ALL L+ + ++IFV T+ HE+ L GI A
Sbjct: 218 ERKKIQQWYYRADDIKHKTALLCHLLKQPDVSKSIIFVRTRERVHELVSWLREAGINAWF 277
Query: 184 LHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
L G + Q R E++ + D +VL+ATD+A+RGLDI + V N+ MP + + Y+HR+G
Sbjct: 278 LEGEMVQAKRTEAVIRLGDGRVNVLVATDIASRGLDIDDISHVFNFDMPRTADVYLHRIG 337
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
RT RAG+ GV++S+ D L+ ++ + P+K R+I P K PS
Sbjct: 338 RTGRAGRKGVAISLVEAHDHILLGKIGRYLNEPLKPRVIDELRPTSKAPS 387
>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
++ A L L +IF T ++ + I+L LG A LHG +TQ RL SL K
Sbjct: 263 NKDAYLLYLANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNK 322
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK +L+ATDVA+RGLDI V VINY MP + + Y+HRVGRTARAG+ G S+++
Sbjct: 323 FKSGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT 382
Query: 260 EVDRKLVKQV 269
+ D ++++++
Sbjct: 383 QYDVEILQRI 392
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 7/132 (5%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR---KLVKQVIKNAK 274
LDI GV V NY +P E Y+HR+GRT RAGK G++++ + + V+Q K
Sbjct: 304 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRTVEQTTKKRM 363
Query: 275 NPVKHRIIPPGY 286
P+K PP +
Sbjct: 364 QPLK----PPTW 371
>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 460
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++F TK + ++ + L GIK +HGN +Q R+ +L F
Sbjct: 233 KRDLLLHLLAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDF 292
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 293 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQ 352
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ KL++Q+++ V+ R + PGY
Sbjct: 353 DEAKLLRQIVRMLGRDVEIRDV-PGY 377
>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
Length = 509
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 231 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 290
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 291 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 337
>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 484
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL L+ + ++ T++F TK + ++ + L GIK +HGN +Q R+ +L F
Sbjct: 257 KRDLLLHLLAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDF 316
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K VL+ATD+AARG+DI + VINY +P E Y+HR+GRT R G G ++S+ +
Sbjct: 317 KAGRVTVLVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQ 376
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ KL++Q+++ V+ R + PGY
Sbjct: 377 DEAKLLRQIVRMLGRDVEIRDV-PGY 401
>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|374978909|ref|ZP_09720249.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375002438|ref|ZP_09726778.1| DEAD/DEAH box helicase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375115560|ref|ZP_09760730.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|375120147|ref|ZP_09765314.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375124541|ref|ZP_09769705.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|378446062|ref|YP_005233694.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378451406|ref|YP_005238765.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700546|ref|YP_005182503.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378954069|ref|YP_005211556.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|378985208|ref|YP_005248364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378990025|ref|YP_005253189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379701882|ref|YP_005243610.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497321|ref|YP_005398010.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386592394|ref|YP_006088794.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409249708|ref|YP_006885527.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416426746|ref|ZP_11693179.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416430088|ref|ZP_11694852.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416438223|ref|ZP_11699432.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416443909|ref|ZP_11703309.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416450868|ref|ZP_11707823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416460606|ref|ZP_11714866.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416471092|ref|ZP_11719145.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481461|ref|ZP_11723257.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489934|ref|ZP_11726525.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416499203|ref|ZP_11730676.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416503911|ref|ZP_11732918.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416514861|ref|ZP_11738424.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530983|ref|ZP_11745397.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416539180|ref|ZP_11749889.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546052|ref|ZP_11753607.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416552206|ref|ZP_11756935.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416560841|ref|ZP_11761396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416569998|ref|ZP_11765811.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416580984|ref|ZP_11772281.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416583169|ref|ZP_11773135.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416591252|ref|ZP_11778295.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416602880|ref|ZP_11785496.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604623|ref|ZP_11786305.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416614016|ref|ZP_11792418.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416625063|ref|ZP_11798427.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416627064|ref|ZP_11798985.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416644613|ref|ZP_11806895.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416648830|ref|ZP_11809416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416658700|ref|ZP_11814423.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416668470|ref|ZP_11818915.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416677597|ref|ZP_11822295.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416695112|ref|ZP_11827543.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707840|ref|ZP_11832880.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416711352|ref|ZP_11835132.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416720654|ref|ZP_11842288.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416722340|ref|ZP_11843333.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416734051|ref|ZP_11850755.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416736656|ref|ZP_11852188.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416743397|ref|ZP_11856123.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416755587|ref|ZP_11862131.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416761090|ref|ZP_11865257.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416770902|ref|ZP_11872219.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417325838|ref|ZP_12111693.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417333161|ref|ZP_12116812.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|417343084|ref|ZP_12123731.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417351135|ref|ZP_12129033.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417360051|ref|ZP_12134266.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|417367205|ref|ZP_12139183.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|417392748|ref|ZP_12155477.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|417512737|ref|ZP_12176976.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|417519914|ref|ZP_12181941.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|418482514|ref|ZP_13051529.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418489990|ref|ZP_13056547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418494096|ref|ZP_13060553.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418498848|ref|ZP_13065260.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418503262|ref|ZP_13069629.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418507505|ref|ZP_13073826.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418513994|ref|ZP_13080214.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418525883|ref|ZP_13091862.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418761866|ref|ZP_13318003.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418767849|ref|ZP_13323907.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773004|ref|ZP_13328998.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418777884|ref|ZP_13333809.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779380|ref|ZP_13335282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418784095|ref|ZP_13339935.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418792086|ref|ZP_13347834.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418799138|ref|ZP_13354806.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418800660|ref|ZP_13356310.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418805612|ref|ZP_13361198.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418814339|ref|ZP_13369857.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418818788|ref|ZP_13374254.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418819151|ref|ZP_13374606.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418827347|ref|ZP_13382497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829499|ref|ZP_13384475.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418837875|ref|ZP_13392734.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842007|ref|ZP_13396821.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418844014|ref|ZP_13398808.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850205|ref|ZP_13404922.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418856541|ref|ZP_13411184.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859670|ref|ZP_13414271.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862300|ref|ZP_13416843.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418867776|ref|ZP_13422230.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419729121|ref|ZP_14256081.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419734461|ref|ZP_14261352.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419740880|ref|ZP_14267597.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742680|ref|ZP_14269352.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419751291|ref|ZP_14277715.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419787583|ref|ZP_14313292.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419791665|ref|ZP_14317313.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421356979|ref|ZP_15807292.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361451|ref|ZP_15811715.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367204|ref|ZP_15817405.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421372618|ref|ZP_15822766.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421375806|ref|ZP_15825918.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381122|ref|ZP_15831178.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421383802|ref|ZP_15833833.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421388585|ref|ZP_15838573.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396364|ref|ZP_15846295.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421397134|ref|ZP_15847056.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421401825|ref|ZP_15851691.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408981|ref|ZP_15858778.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421413643|ref|ZP_15863395.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421415550|ref|ZP_15865276.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421423686|ref|ZP_15873341.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424766|ref|ZP_15874404.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421429285|ref|ZP_15878882.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421433540|ref|ZP_15883099.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421437994|ref|ZP_15887498.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446222|ref|ZP_15895638.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421571735|ref|ZP_16017404.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573678|ref|ZP_16019311.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421581212|ref|ZP_16026759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421582929|ref|ZP_16028459.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|421885778|ref|ZP_16316963.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422026960|ref|ZP_16373314.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422031989|ref|ZP_16378116.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427553387|ref|ZP_18928611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427570669|ref|ZP_18933328.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427591221|ref|ZP_18938128.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427614187|ref|ZP_18942985.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427638883|ref|ZP_18947892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427656979|ref|ZP_18952642.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427662245|ref|ZP_18957562.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427674584|ref|ZP_18962374.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427799847|ref|ZP_18967703.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436622358|ref|ZP_20514756.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436799418|ref|ZP_20523758.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811110|ref|ZP_20530106.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436817079|ref|ZP_20534161.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436845556|ref|ZP_20538883.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436853422|ref|ZP_20543382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436859488|ref|ZP_20547401.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436863661|ref|ZP_20549956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436868504|ref|ZP_20553264.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876340|ref|ZP_20557770.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436887230|ref|ZP_20563630.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436898853|ref|ZP_20570488.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901209|ref|ZP_20572133.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436909337|ref|ZP_20576061.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436921271|ref|ZP_20583674.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436929964|ref|ZP_20588475.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938140|ref|ZP_20593052.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436945405|ref|ZP_20597559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436949571|ref|ZP_20599552.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436960828|ref|ZP_20604465.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436967534|ref|ZP_20607365.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436983995|ref|ZP_20614315.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436991200|ref|ZP_20617379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437007500|ref|ZP_20623353.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437016725|ref|ZP_20626141.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437033393|ref|ZP_20632587.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437037852|ref|ZP_20634262.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437049558|ref|ZP_20640150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055778|ref|ZP_20643583.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066471|ref|ZP_20649549.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437072890|ref|ZP_20652732.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437080713|ref|ZP_20657263.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088824|ref|ZP_20661729.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437111699|ref|ZP_20668286.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118488|ref|ZP_20670322.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437133513|ref|ZP_20678486.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139556|ref|ZP_20681889.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437143648|ref|ZP_20684472.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437150049|ref|ZP_20688559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437164176|ref|ZP_20697059.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437170272|ref|ZP_20700329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179390|ref|ZP_20705349.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437186806|ref|ZP_20709734.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437221156|ref|ZP_20712999.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437257554|ref|ZP_20715970.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437270311|ref|ZP_20723107.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437275092|ref|ZP_20725638.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437284111|ref|ZP_20729364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437315512|ref|ZP_20737201.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437330832|ref|ZP_20741859.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437343067|ref|ZP_20745680.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437351381|ref|ZP_20747518.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437429055|ref|ZP_20755590.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437439297|ref|ZP_20757237.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437461389|ref|ZP_20762338.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437472126|ref|ZP_20765361.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489851|ref|ZP_20770633.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437510741|ref|ZP_20776819.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437545755|ref|ZP_20783135.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437549628|ref|ZP_20783427.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437578371|ref|ZP_20791433.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437593558|ref|ZP_20795491.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437606035|ref|ZP_20799569.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437613256|ref|ZP_20801440.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437629126|ref|ZP_20806089.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437662306|ref|ZP_20813442.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437676590|ref|ZP_20817051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437695026|ref|ZP_20821996.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437713567|ref|ZP_20827447.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437721375|ref|ZP_20828993.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437764019|ref|ZP_20835005.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437806988|ref|ZP_20839665.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437841377|ref|ZP_20846645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|438083982|ref|ZP_20858232.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438096344|ref|ZP_20862112.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438109233|ref|ZP_20867296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438145302|ref|ZP_20875786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440763168|ref|ZP_20942214.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766878|ref|ZP_20945864.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440773577|ref|ZP_20952470.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445130596|ref|ZP_21381405.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445140268|ref|ZP_21384826.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445153839|ref|ZP_21391532.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445167954|ref|ZP_21394700.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445205052|ref|ZP_21401399.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445234708|ref|ZP_21406774.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445278141|ref|ZP_21410696.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445338166|ref|ZP_21416055.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445344514|ref|ZP_21417690.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445360144|ref|ZP_21423377.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452123550|ref|YP_007473798.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353077126|gb|EHB42886.1| DEAD/DEAH box helicase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353569112|gb|EHC33791.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353574887|gb|EHC37787.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353579476|gb|EHC41003.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353587667|gb|EHC46897.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353589868|gb|EHC48557.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|353610851|gb|EHC63687.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353638899|gb|EHC84328.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|353645316|gb|EHC89035.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|357204680|gb|AET52726.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|357955828|gb|EHJ81504.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|363549985|gb|EHL34316.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363558909|gb|EHL43097.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363560938|gb|EHL45069.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363564918|gb|EHL48958.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363565114|gb|EHL49152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363574370|gb|EHL58238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575959|gb|EHL59802.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366062786|gb|EHN27013.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366062987|gb|EHN27208.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366068244|gb|EHN32390.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366072915|gb|EHN36996.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366073609|gb|EHN37678.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366080757|gb|EHN44718.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081215|gb|EHN45165.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366829247|gb|EHN56124.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205870|gb|EHP19375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|379984682|emb|CCF89236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380464142|gb|AFD59545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|381293468|gb|EIC34625.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381297451|gb|EIC38541.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381297627|gb|EIC38715.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381304494|gb|EIC45478.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381313609|gb|EIC54391.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383799438|gb|AFH46520.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392619593|gb|EIX01974.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392619973|gb|EIX02347.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392730415|gb|EIZ87658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392733650|gb|EIZ90850.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392738476|gb|EIZ95618.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392742856|gb|EIZ99934.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392753265|gb|EJA10201.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392755210|gb|EJA12121.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392764326|gb|EJA21126.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392768667|gb|EJA25414.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392772039|gb|EJA28744.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392783575|gb|EJA40194.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392784587|gb|EJA41178.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392784608|gb|EJA41198.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392795458|gb|EJA51828.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392797677|gb|EJA53981.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392799854|gb|EJA56100.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392804110|gb|EJA60286.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392807757|gb|EJA63825.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392815522|gb|EJA71459.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392818818|gb|EJA74697.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392819421|gb|EJA75290.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392829748|gb|EJA85411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836403|gb|EJA91986.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392839165|gb|EJA94710.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395988836|gb|EJH97982.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395992281|gb|EJI01399.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993454|gb|EJI02549.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395999534|gb|EJI08552.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396002216|gb|EJI11221.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396004721|gb|EJI13703.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396009973|gb|EJI18888.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396019568|gb|EJI28420.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396021039|gb|EJI29872.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396026540|gb|EJI35307.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396033849|gb|EJI42554.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396034724|gb|EJI43410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036407|gb|EJI45068.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396038784|gb|EJI47418.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396047787|gb|EJI56358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396058849|gb|EJI67308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396058941|gb|EJI67399.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396061795|gb|EJI70213.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396063151|gb|EJI71552.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396074624|gb|EJI82910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402518361|gb|EJW25746.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402519841|gb|EJW27200.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527051|gb|EJW34316.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402532593|gb|EJW39784.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414015812|gb|EKS99606.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414016916|gb|EKT00669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414017460|gb|EKT01177.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414030177|gb|EKT13310.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414031521|gb|EKT14577.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414035060|gb|EKT17960.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414045301|gb|EKT27712.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414045385|gb|EKT27789.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414050907|gb|EKT33059.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414058076|gb|EKT39784.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414063984|gb|EKT45029.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434938844|gb|ELL45745.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434959948|gb|ELL53385.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434963746|gb|ELL56804.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434964641|gb|ELL57639.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434971528|gb|ELL64031.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434978525|gb|ELL70558.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984151|gb|ELL75912.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434987648|gb|ELL79280.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434997144|gb|ELL88409.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435004186|gb|ELL95179.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435010857|gb|ELM01612.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435011133|gb|ELM01870.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435013269|gb|ELM03923.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435021790|gb|ELM12158.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435025365|gb|ELM15513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435028761|gb|ELM18821.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435032788|gb|ELM22711.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435034591|gb|ELM24460.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435036183|gb|ELM26005.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435052639|gb|ELM42130.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435053325|gb|ELM42778.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435061482|gb|ELM50709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435064638|gb|ELM53765.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435068722|gb|ELM57733.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068910|gb|ELM57920.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435077407|gb|ELM66162.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435082707|gb|ELM71319.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435087852|gb|ELM76325.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435096002|gb|ELM84276.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098139|gb|ELM86383.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435098367|gb|ELM86610.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435109574|gb|ELM97521.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435112367|gb|ELN00236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435116247|gb|ELN03993.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435118108|gb|ELN05789.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435120743|gb|ELN08308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435131444|gb|ELN18657.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435132024|gb|ELN19225.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435139733|gb|ELN26716.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435140040|gb|ELN27011.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435147233|gb|ELN34012.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435147468|gb|ELN34232.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435151031|gb|ELN37692.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435157912|gb|ELN44334.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167358|gb|ELN53290.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435171042|gb|ELN56685.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435175015|gb|ELN60443.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435180977|gb|ELN66077.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435186098|gb|ELN70947.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435189442|gb|ELN74076.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435192314|gb|ELN76846.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435199504|gb|ELN83580.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435200745|gb|ELN84713.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435212691|gb|ELN95660.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435213744|gb|ELN96614.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435220447|gb|ELO02744.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435226358|gb|ELO07936.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435231061|gb|ELO12319.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435231883|gb|ELO13028.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435233542|gb|ELO14534.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435241844|gb|ELO22164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435246811|gb|ELO26801.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435251872|gb|ELO31470.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435256304|gb|ELO35613.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435264511|gb|ELO43423.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435267559|gb|ELO46237.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435276327|gb|ELO54339.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435277979|gb|ELO55855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435284746|gb|ELO62174.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435286511|gb|ELO63764.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435294394|gb|ELO71027.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435296715|gb|ELO73075.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435301173|gb|ELO77217.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435308351|gb|ELO83318.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435319739|gb|ELO92529.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435327326|gb|ELO99057.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435332810|gb|ELP03713.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436415304|gb|ELP13224.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436420934|gb|ELP18787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436421377|gb|ELP19222.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|444851797|gb|ELX76883.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444851823|gb|ELX76908.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444852294|gb|ELX77374.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444860347|gb|ELX85265.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444861057|gb|ELX85950.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444864715|gb|ELX89504.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444872871|gb|ELX97181.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444880275|gb|ELY04355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444885235|gb|ELY09034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444886801|gb|ELY10543.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451912554|gb|AGF84360.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIH 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 224 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|421189112|ref|ZP_15646431.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB422]
gi|421191928|ref|ZP_15649198.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB548]
gi|399970749|gb|EJO05040.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB548]
gi|399973869|gb|EJO08033.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB422]
Length = 521
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 243 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 302
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 303 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349
>gi|359770371|ref|ZP_09273851.1| putative ATP-dependent RNA helicase [Gordonia effusa NBRC 100432]
gi|359312522|dbj|GAB16629.1| putative ATP-dependent RNA helicase [Gordonia effusa NBRC 100432]
Length = 566
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ T + TMIF TKR A ++ L G G +HG+L Q +R ++L+
Sbjct: 292 LDKAELVARVLQATDRGATMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVAREKALK 351
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+D +VL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G ++++
Sbjct: 352 KFRDGTINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGTAITL 410
>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 432
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL+ L+ + ++F T+ A ++ L L GI +HG Q SR +LR+F
Sbjct: 231 KRELLSELIGKKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREF 290
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ + VL+AT+VAARGLDI+G++ V+NY +P E Y+HR+GRT RAGK GV++S
Sbjct: 291 KEGKMRVLVATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSR 350
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGY 286
+ + + + K ++ RI PGY
Sbjct: 351 EEERTLADIEKLIGQQLR-RISIPGY 375
>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 453
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ LL + + + + ++F TK + ++ LL G KAG +HGN +Q R +L +
Sbjct: 239 DKAKLLESYLLKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTE 298
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+D DVL+ATDVAARG+DI GV+ V NY MP+ E+Y+HR+GRTARAG G +V+
Sbjct: 299 FRDGTLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVA 358
Query: 260 EVDRKLVKQVIKNAKNPV 277
+ + V K K P+
Sbjct: 359 PAEMDEFRAVEKLLKQPI 376
>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
Length = 521
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 243 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 302
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 303 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 115/233 (49%), Gaps = 37/233 (15%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G A +HG+L+Q RL LRKFK+ DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRKFKEGSIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
LDI GV V N+ +P E Y+HR+GRT RAGK G++++ ++ +K V K K
Sbjct: 304 LDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIVEKTIKR-- 361
Query: 278 KHRIIPPGYPRLKTPSFPPPPLAEIVD-KYRAKVEAIEGEVQKI------LTEEKHDRLL 330
+ PP L E ++ + +A +E I +Q I L ++ + LL
Sbjct: 362 ------------RMDKMKPPTLDEALEGQQKATIEKI---IQTIESNNLQLYKQAAEDLL 406
Query: 331 NKADE--QVSKAEKM-----------LKEKKPLHENPPREWFQTKKERAAIKT 370
+ D VS A KM L E+ PL RE + K R +T
Sbjct: 407 EQQDAVMVVSAALKMMTKEPDTTPVKLTEETPLPPKRDRERSSSDKRRGGHET 459
>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
Length = 522
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 17/153 (11%)
Query: 148 LVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
++CR D +IFV TKR E+ L G A +HG+LTQ R +R+F+++
Sbjct: 237 VLCRLLDLQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREK 296
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS--MAGEV 261
D+L+ATDVAARGLDI GV V NY +P E Y+HRVGRT RAG+ G + + + E+
Sbjct: 297 TIDILVATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREI 356
Query: 262 DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF 294
D ++ + +KHRI R K PSF
Sbjct: 357 DH------LRTIEKLIKHRI-----SRRKAPSF 378
>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
Length = 506
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR LL L+ D +IF TK +A ++ L G ++ LHG+L Q +R ++
Sbjct: 282 HKDR--LLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTI 339
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
R ++ VL+ATDVAARG+DI G+ V NY +P E Y+HR+GRT RAG+ G++VS+
Sbjct: 340 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 399
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++ +K++ + ++P+ +I PR KTP
Sbjct: 400 VHHAEQGALKRIERFVRSPLPVNVIEGFEPR-KTP 433
>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 447
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203
LL AL+ ++F TK+ A E+ + L G A LHG++ Q R +L++ +
Sbjct: 235 LLEALLGTDGLQQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQG 294
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263
VL+ATDVAARG+D+ G+ VIN+ P +E Y+HR+GRT RAG+ G++++++G +
Sbjct: 295 RIGVLVATDVAARGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAITLSGPRET 354
Query: 264 KLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPP 297
L++ + + + + IP P + PS P P
Sbjct: 355 GLIRAIERFTGDRLAVHTIPGLEPAPRRPSAPRP 388
>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 505
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESL 197
H DR LL L+ D +IF TK +A ++ L G ++ LHG+L Q +R ++
Sbjct: 282 HKDR--LLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTI 339
Query: 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
R ++ VL+ATDVAARG+DI G+ V NY +P E Y+HR+GRT RAG+ G++VS+
Sbjct: 340 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 399
Query: 258 AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTP 292
++ +K++ + ++P+ +I PR KTP
Sbjct: 400 VHHAEQGALKRIERFVRSPLPVNVIEGFEPR-KTP 433
>gi|436662616|ref|ZP_20517194.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435018413|gb|ELM08878.1| ATP-dependent RNA helicase SrmB, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
Length = 343
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL PV + +
Sbjct: 63 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIH 122
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + ALL L+ + +++FV + HE+ L L GI L G +
Sbjct: 123 QWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMA 182
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 183 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 242
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 243 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 286
>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 455
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ LL+ L+ ++F TK A+ + L L GIKA HG+ TQ +R ++L +F
Sbjct: 248 KRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF 307
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
+ + VL+ATDVAARGLDI + V+N+ +P E Y+HRVGRT RAGK G ++S+
Sbjct: 308 SEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSP 367
Query: 261 VDRKLVKQVIKNAKNPVKHRIIPPGYP--RLKTPSFPPPPLA-EIVDKYRAKVE 311
D + ++ + + + + RI+ PGY RL+ + + + ++YRA E
Sbjct: 368 KDERFLENIEQLIERKFE-RIVAPGYEFNRLEASEYQEATVKRDSKNRYRAAQE 420
>gi|429093899|ref|ZP_19156467.1| ATP-dependent RNA helicase SrmB [Cronobacter dublinensis 1210]
gi|426741143|emb|CCJ82580.1| ATP-dependent RNA helicase SrmB [Cronobacter dublinensis 1210]
Length = 445
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L GI L G + Q R
Sbjct: 228 RADNIEHKTALLVHLLKQPEATRSIVFVRKRDRVHELANWLREAGINNCYLEGEMVQVKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ D +VLIATDVAARG+DI V VIN+ MP + + Y+HR+GRTARAG+ G
Sbjct: 288 NEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ +V + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLGKVGRYLNEPLKARVIDELRPTTRAPS 387
>gi|421185572|ref|ZP_15642971.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
gi|399968835|gb|EJO03266.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
Length = 521
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L L G KA +HG+L Q +R+ +LR FK E L+ATDVAARG
Sbjct: 243 IVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARG 302
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA--GEVD 262
LDI GV V NY +P E Y+HR+GRT RAG GVSV+ GE+D
Sbjct: 303 LDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349
>gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 522
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
M+FV K+ A + +LG LG A LHG Q +R +L FK+ DVL+ATDVA R
Sbjct: 373 VMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQENREAALSSFKEGSHDVLVATDVAGR 432
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL---VKQVIKNA 273
G+D+ GV+ V+N+ MP +E Y HR+GRT RAG+ G+++S E D + +KQ++ +
Sbjct: 433 GIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGRKGLAISFLTEEDSGIFYDLKQLLVST 492
Query: 274 KNPV 277
N V
Sbjct: 493 NNIV 496
>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
Length = 483
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F +K + +M I LG G K G +H +L Q R E + KFK ++ DVL+ATD+ ARG
Sbjct: 248 IVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVARG 307
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
+DI ++ VIN+ +PH E Y+HR+GRTARA G ++++ E D++ + + +
Sbjct: 308 IDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRFASIEHFLETEI 367
Query: 278 KHRIIPPGYPRLKTPSFPP 296
+ R +P G + P++ P
Sbjct: 368 EKRSLPEGLG--EGPAYRP 384
>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L L GI L G + Q R
Sbjct: 228 RADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKR 287
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG+ G
Sbjct: 288 NEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGT 347
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 348 AISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPS 387
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query: 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192
I KDT+L L+ +IF T E + ILL LG A LHG L+Q S
Sbjct: 285 IHKDTYL------IYLLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSS 338
Query: 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252
RL +L KF+ ++L+ATDVAARGLDI V V+NY +P + YIHRVGRTARAGK G
Sbjct: 339 RLGALNKFRAGSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSG 398
Query: 253 VSVSMAGEVDRKLVKQV 269
++S+ + D ++ ++
Sbjct: 399 HAISVVTQYDLEIFMRI 415
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 67/101 (66%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F TKR E+ L G +A +HG+L+Q R+ LR FK D+L+ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAAR 301
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI GV V NY +P E Y+HR+GRT RAGKGG+SV+
Sbjct: 302 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTF 342
>gi|385809721|ref|YP_005846117.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
gi|383801769|gb|AFH48849.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
Length = 567
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 7/168 (4%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+ +IF TKRE ++ LL G A LHG+L+Q R + KF+ +LIATDVAA
Sbjct: 245 YGIIFCRTKRETQDVADLLLKDGYNAEALHGDLSQAQRETVMNKFRQRNIQLLIATDVAA 304
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKN 275
RGLD+ G+ VINY +P LE Y HR GRT RAGK G S+ + ++ ++ +
Sbjct: 305 RGLDVDGLTHVINYNLPDELEIYTHRSGRTGRAGKTGTSIVITNLKEKSKLRTIENQTNK 364
Query: 276 PVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTE 323
+H +P G L +VD+ KVE + ++Q L E
Sbjct: 365 KFEHHKVPSG------NEICARQLFHLVDRVE-KVEVDDSKIQSFLPE 405
>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 436
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R LL L+ + ++FV +KR A + + L GIKA LHGN++Q R SL +F
Sbjct: 231 RTGLLRHLLETEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERF 290
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
K + VL+ATDVAARG+DI G+ V+NY +P S Y+HR+GRT RAG+ G++V+
Sbjct: 291 KQSKVRVLMATDVAARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNF 347
>gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 429
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 16/204 (7%)
Query: 141 RKA-LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
RKA LL+ LV R ++F +K A + L L G+K+ HG+ TQ +R +L +
Sbjct: 227 RKAELLSELVGRNNWQQVLVFASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEE 286
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK+ VL+ATDVAARGLDI+ + VIN +P E YIHR+GRT RAG G ++S
Sbjct: 287 FKNGMLRVLVATDVAARGLDIQALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVC 346
Query: 260 EVDRKLVKQV--IKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEV 317
D K+++++ + K P R + PGY L TP P +YR E+ + V
Sbjct: 347 PSDEKMLEEIETLIELKLP---RTVLPGY-ELGTP-LPA--------RYRETQESTKKRV 393
Query: 318 QKILTEEKHDRLLNKADEQVSKAE 341
++ + KH + D++ K +
Sbjct: 394 ERRKGKPKHGKRGASGDDRADKGK 417
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 81/131 (61%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
++ALL L ++F TK A ++ L G++AG +HGN +QP R +L F
Sbjct: 234 KRALLTELFSDPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAF 293
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
K+ + VL+ATD+AARG+D+ V V+N+ +P+ E Y+HR+GRTARAGK G ++S
Sbjct: 294 KNGKLRVLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAG 353
Query: 261 VDRKLVKQVIK 271
+ KL+K + K
Sbjct: 354 DEMKLLKDIEK 364
>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|354552384|ref|ZP_08971692.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|353555706|gb|EHC25094.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
Length = 480
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 78/117 (66%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV TK+ A ++ L +G E HGNL+Q R + +F++ + +++ATD+A
Sbjct: 243 ESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVVATDIA 302
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
ARGLD+ + VINY +P + E YIHR+GRT RAGK G ++S+ +DR++V+Q+ K
Sbjct: 303 ARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQIEK 359
>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
Length = 427
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 74/114 (64%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR A ++ L IK LHG+++Q SR +++ +FK ET +L+ATD+A+
Sbjct: 245 QAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVATDLAS 304
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RG+D++ + V NY MP E YIHR+GRT RA G+++S+ DR+ ++++
Sbjct: 305 RGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358
>gi|399046383|ref|ZP_10738806.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398055540|gb|EJL47607.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 492
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 81/129 (62%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
T++F T+ ++ L G+ A L+G+L+Q R + +R+F++ L+ATD+AAR
Sbjct: 244 TIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQFREMRFQYLVATDIAAR 303
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLD+ GV VINY +P+ +E YIHRVGRT RAG+ G ++S+ + L+ + K K
Sbjct: 304 GLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSGKAISLISPRQKNLMGRFAKATKAS 363
Query: 277 VKHRIIPPG 285
++ RI+ PG
Sbjct: 364 IEERILEPG 372
>gi|392415281|ref|YP_006451886.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390615057|gb|AFM16207.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 493
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 80/119 (67%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ +++ ++ + TMIF TKR A ++ L G K G +HG+L Q +R ++L+
Sbjct: 244 LDKVEMVSRILQAEGRGATMIFTRTKRTAQKVADELSERGFKVGAVHGDLGQGAREKALK 303
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
F+ E DVL+ATDVAARG+DI + VIN+++P + Y+HR+GRT RAGK G++V++
Sbjct: 304 AFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQSYVHRIGRTGRAGKTGIAVTL 362
>gi|443893885|dbj|GAC71341.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 562
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F T ++ + ILL LLG A LHG L+Q +RL +L KFK +L+ATDVA+RG
Sbjct: 358 IVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRG 417
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
LDI V V+NY +P + + YIHRVGRTARAG+ G SV++ + D +L++++
Sbjct: 418 LDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 469
>gi|340000303|ref|YP_004731187.1| ATP-dependent RNA helicase SrmB [Salmonella bongori NCTC 12419]
gi|339513665|emb|CCC31420.1| ATP-dependent RNA helicase SrmB [Salmonella bongori NCTC 12419]
Length = 444
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLC----------LL 129
D F IE +T T + +A LL+ PV + +
Sbjct: 164 DMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLKDPVEVSATPSIRERKKIH 223
Query: 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
+ R D + + LL L+ + T++FV + HE+ L L GI L G +
Sbjct: 224 QWYYRADNYEHKFELLKHLLKQDDATRTIVFVRKRERVHELAEQLRLAGINNCYLEGEMA 283
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E +++ D +VL+ATDVAARG+DI V VIN+ MP S + Y+HR+GRT RAG
Sbjct: 284 QIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAG 343
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ ++ + + P+K R+I P + PS
Sbjct: 344 RKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPITRAPS 387
>gi|441507538|ref|ZP_20989464.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
gi|441448614|dbj|GAC47425.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
Length = 544
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
LD+ L+A ++ + TMIF TKR A ++ L G G +HG+L Q +R ++L+
Sbjct: 261 LDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALK 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
KF+ E DVL+ATDVAARG+DI V VINY+ P + Y+HR+GRT RAG+ G+++++
Sbjct: 321 KFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGRTGIAITL 379
>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM10+]
gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
str. 91001]
gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
32953]
gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|384122913|ref|YP_005505533.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|384126822|ref|YP_005509436.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|384139452|ref|YP_005522154.1| ATP-dependent RNA helicase SrmB [Yersinia pestis A1122]
gi|384415579|ref|YP_005624941.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420547721|ref|ZP_15045591.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-01]
gi|420553036|ref|ZP_15050344.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-02]
gi|420558597|ref|ZP_15055208.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-03]
gi|420564050|ref|ZP_15060064.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-04]
gi|420569091|ref|ZP_15064642.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-05]
gi|420574741|ref|ZP_15069756.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-06]
gi|420580036|ref|ZP_15074562.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-07]
gi|420585403|ref|ZP_15079431.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-08]
gi|420590534|ref|ZP_15084046.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-09]
gi|420595901|ref|ZP_15088872.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-10]
gi|420601574|ref|ZP_15093926.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-11]
gi|420606993|ref|ZP_15098814.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-12]
gi|420612383|ref|ZP_15103656.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-13]
gi|420617771|ref|ZP_15108376.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|420623072|ref|ZP_15113124.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-15]
gi|420628154|ref|ZP_15117737.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-16]
gi|420633280|ref|ZP_15122342.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-19]
gi|420638479|ref|ZP_15127013.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-25]
gi|420643938|ref|ZP_15131975.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-29]
gi|420649236|ref|ZP_15136783.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-32]
gi|420654877|ref|ZP_15141851.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-34]
gi|420660363|ref|ZP_15146778.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-36]
gi|420665651|ref|ZP_15151515.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-42]
gi|420670548|ref|ZP_15155973.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|420675899|ref|ZP_15160843.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-46]
gi|420681507|ref|ZP_15165917.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-47]
gi|420686817|ref|ZP_15170648.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-48]
gi|420692025|ref|ZP_15175226.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-52]
gi|420697797|ref|ZP_15180299.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-53]
gi|420703538|ref|ZP_15184936.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|420709016|ref|ZP_15189693.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-55]
gi|420714464|ref|ZP_15194556.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-56]
gi|420719964|ref|ZP_15199296.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-58]
gi|420725452|ref|ZP_15204098.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-59]
gi|420731023|ref|ZP_15209090.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-60]
gi|420736076|ref|ZP_15213660.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-61]
gi|420741554|ref|ZP_15218583.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-63]
gi|420747203|ref|ZP_15223395.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-64]
gi|420752707|ref|ZP_15228267.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-65]
gi|420758362|ref|ZP_15232887.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-66]
gi|420763754|ref|ZP_15237544.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-71]
gi|420768964|ref|ZP_15242224.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-72]
gi|420773960|ref|ZP_15246738.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-76]
gi|420779532|ref|ZP_15251656.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-88]
gi|420785137|ref|ZP_15256565.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-89]
gi|420790328|ref|ZP_15261207.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|420795840|ref|ZP_15266165.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-91]
gi|420800895|ref|ZP_15270703.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-92]
gi|420806267|ref|ZP_15275565.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-93]
gi|420811583|ref|ZP_15280350.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|420817131|ref|ZP_15285350.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-95]
gi|420822449|ref|ZP_15290128.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-96]
gi|420827530|ref|ZP_15294689.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-98]
gi|420833216|ref|ZP_15299826.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-99]
gi|420838090|ref|ZP_15304235.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-100]
gi|420843275|ref|ZP_15308936.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-101]
gi|420848926|ref|ZP_15314019.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-102]
gi|420854511|ref|ZP_15318789.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-103]
gi|420859792|ref|ZP_15323401.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-113]
gi|421764205|ref|ZP_16200997.1| ATP-dependent RNA helicase SrmB [Yersinia pestis INS]
gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM10+]
gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
PB1/+]
gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342854581|gb|AEL73134.1| ATP-dependent RNA helicase SrmB [Yersinia pestis A1122]
gi|391424573|gb|EIQ86934.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-01]
gi|391425878|gb|EIQ88112.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-02]
gi|391426496|gb|EIQ88673.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-03]
gi|391439781|gb|EIR00406.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-04]
gi|391441284|gb|EIR01789.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-05]
gi|391444686|gb|EIR04882.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-06]
gi|391456589|gb|EIR15600.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-07]
gi|391457538|gb|EIR16467.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-08]
gi|391459927|gb|EIR18666.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-09]
gi|391472747|gb|EIR30178.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-10]
gi|391474503|gb|EIR31789.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-11]
gi|391475186|gb|EIR32410.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-12]
gi|391488945|gb|EIR44736.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-13]
gi|391490066|gb|EIR45747.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-15]
gi|391491586|gb|EIR47134.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|391504415|gb|EIR58508.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-16]
gi|391505092|gb|EIR59129.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-19]
gi|391509966|gb|EIR63543.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-25]
gi|391520404|gb|EIR72957.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-29]
gi|391522600|gb|EIR74981.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-34]
gi|391523676|gb|EIR75968.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-32]
gi|391535631|gb|EIR86689.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-36]
gi|391538258|gb|EIR89078.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-42]
gi|391540416|gb|EIR91043.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|391553534|gb|EIS02853.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-46]
gi|391554006|gb|EIS03286.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-47]
gi|391554900|gb|EIS04106.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-48]
gi|391568566|gb|EIS16271.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-52]
gi|391569655|gb|EIS17214.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-53]
gi|391575349|gb|EIS22079.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|391582462|gb|EIS28219.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-55]
gi|391585202|gb|EIS30636.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-56]
gi|391595913|gb|EIS39909.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-58]
gi|391598466|gb|EIS42179.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-60]
gi|391600000|gb|EIS43568.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-59]
gi|391612901|gb|EIS54923.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-61]
gi|391613490|gb|EIS55455.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-63]
gi|391617357|gb|EIS58911.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-64]
gi|391625731|gb|EIS66190.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-65]
gi|391632064|gb|EIS71630.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-66]
gi|391636580|gb|EIS75597.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-71]
gi|391638877|gb|EIS77629.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-72]
gi|391648672|gb|EIS86159.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-76]
gi|391652556|gb|EIS89602.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-88]
gi|391657188|gb|EIS93725.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-89]
gi|391661593|gb|EIS97623.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|391669495|gb|EIT04623.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-91]
gi|391678843|gb|EIT13028.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-93]
gi|391679747|gb|EIT13851.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-92]
gi|391680596|gb|EIT14624.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|391692756|gb|EIT25565.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-95]
gi|391695589|gb|EIT28145.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-96]
gi|391697453|gb|EIT29848.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-98]
gi|391708618|gb|EIT39863.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-99]
gi|391713100|gb|EIT43910.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-100]
gi|391713701|gb|EIT44449.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-101]
gi|391725212|gb|EIT54701.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-102]
gi|391726923|gb|EIT56208.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-103]
gi|391729104|gb|EIT58130.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-113]
gi|411175519|gb|EKS45545.1| ATP-dependent RNA helicase SrmB [Yersinia pestis INS]
Length = 441
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 147 ALVCRTFK----DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
AL+C K ++IFV T+ HE+ L GI A L G + Q R E++ + D
Sbjct: 237 ALLCHLLKQPDVSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGD 296
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
+VL+ATD+A+RGLDI + V N+ MP + + Y+HR+GRT RAG+ GV++S+ D
Sbjct: 297 GRVNVLVATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHD 356
Query: 263 RKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
L+ ++ + P+K R+I P K PS
Sbjct: 357 HILLGKIGRYLNEPLKPRVIDELRPTSKAPS 387
>gi|422415356|ref|ZP_16492313.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
Length = 516
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 68/99 (68%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
++F TKR E+ L + G A +HG+LTQ R+ LRKFK+ + DVL+ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARG 303
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS 256
LDI GV V NY +P E Y+HR+GRT RAGK G++++
Sbjct: 304 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAIT 342
>gi|419808044|ref|ZP_14333006.1| DEAD/DEAH box helicase domain protein [Escherichia coli AI27]
gi|384468954|gb|EIE53203.1| DEAD/DEAH box helicase domain protein [Escherichia coli AI27]
Length = 382
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 10/224 (4%)
Query: 80 DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLL-CFRIRKDTH 138
D F IE +T T + +A LL PV + R RK H
Sbjct: 102 DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH 161
Query: 139 --------LDRK-ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189
L+ K ALL L+ + +++FV + HE+ L GI L G +
Sbjct: 162 QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 221
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
Q R E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG
Sbjct: 222 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG 281
Query: 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
+ G ++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 282 RKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 325
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+++F TKR E+ L L G A +HG+LTQ R+ +LRKFK+ DVL+ATDVAAR
Sbjct: 261 SIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAAR 320
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP 276
GLDI GV V N+ +P E Y+HR+GRT RAG+ G++++ ++ +++ + + K
Sbjct: 321 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIEQTTKRK 380
Query: 277 VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQ 318
+ R+K P+ EAIEG+ Q
Sbjct: 381 MD---------RMKEPTLD---------------EAIEGQQQ 398
>gi|379991142|ref|NP_001244012.1| DEAD box protein 53 [Equus caballus]
Length = 624
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213
+D +IFV K A ++ L + G+ LHGN Q R ++L F+ +LIATD+
Sbjct: 463 EDKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKILIATDL 522
Query: 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271
AARGLD+R V V NY P +LE Y+HRVGRT RAGK GVSV++ + D K+ ++IK
Sbjct: 523 AARGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAGKTGVSVTLMTQADWKIATELIK 580
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,248,846,259
Number of Sequences: 23463169
Number of extensions: 262880951
Number of successful extensions: 993007
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 33280
Number of HSP's successfully gapped in prelim test: 4430
Number of HSP's that attempted gapping in prelim test: 951535
Number of HSP's gapped (non-prelim): 42085
length of query: 396
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 251
effective length of database: 8,957,035,862
effective search space: 2248216001362
effective search space used: 2248216001362
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)