BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3145
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 149 VCRTFKD---HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET 205
+CR K+ + ++F TKR+ E+ L +G KAG +HG+L+Q R + +R FK ++
Sbjct: 230 LCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289
Query: 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
+LIATDV +RG+D+ + VINY +P + E Y HR+GRT RAGK G ++S+
Sbjct: 290 RILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISI 341
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 91/160 (56%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R D + ALL L+ + +++FV + HE+ L GI L G + Q R
Sbjct: 10 RADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 69
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
E++++ + +VL+ATDVAARG+DI V V N+ MP S + Y+HR+GRTARAG+ G
Sbjct: 70 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 129
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPS 293
++S+ D L+ +V + + P+K R+I P+ + PS
Sbjct: 130 AISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 169
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 140 DRKALLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D+++ L L+ T KD T++FV TK+ A + L G +HG+ +Q R E+L
Sbjct: 31 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+F+ ++ +L+AT VAARGLDI VK VIN+ +P +E Y+HR+GRT R G G++ S
Sbjct: 91 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150
Query: 259 GEVDRKLVKQVI 270
E + + K ++
Sbjct: 151 NERNINITKDLL 162
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 140 DRKALLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198
D+++ L L+ T KD T++FV TK+ A + L G +HG+ +Q R E+L
Sbjct: 261 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320
Query: 199 KFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
+F+ ++ +L+AT VAARGLDI VK VIN+ +P +E Y+HR+GRT R G G++ S
Sbjct: 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 380
Query: 259 GEVDRKLVKQVI 270
E + + K ++
Sbjct: 381 NERNINITKDLL 392
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D T++FV TKR A + L +HG+ Q R ++LR FK+ VLIAT VA
Sbjct: 301 DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 360
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG-EVDRKLVKQVIK 271
+RGLDI+ +K VINY MP ++ Y+HR+GRT R G G + S E DR + ++K
Sbjct: 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
D +IF TK +++ L LG ++HG + Q R + + +FK E L+ATDVA
Sbjct: 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 95
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
ARG+DI + VINY +P E Y+HR GRT RAG G ++S +++ + +
Sbjct: 96 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+IF K + +H L L G++A +HG Q R +++ F++ + DVL+ATDVA++
Sbjct: 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLD ++ VINY MP +E+Y+HR+GRT +G G++ +
Sbjct: 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 125 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 158
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 125 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 158
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 125 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 158
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 320 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 380 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 413
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 371 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 431 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 464
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV 242
E HG +TQ R +++FK +E+ +L+ TDV ARG+D V V+ +P L +YIHR+
Sbjct: 320 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
Query: 243 GRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277
GRTAR+GK G SV + + V++ +++AKN V
Sbjct: 380 GRTARSGKEGSSVLFICKDELPFVRE-LEDAKNIV 413
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+++ D ++++ +
Sbjct: 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+V+ D ++++ +
Sbjct: 302 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDI 355
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+V+ D ++++ +
Sbjct: 302 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDI 355
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 257 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 316
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+++ D ++++ +
Sbjct: 317 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 370
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+++ D ++++ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF TKR+ + + +HG++ Q R +++F+ + VLI+TDV A
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+++ D ++++ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++FV T+ ++ L A EL G+L Q R ++ F++ E D+LI TDVA+R
Sbjct: 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASR 278
Query: 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
GLDI V+ VIN+ P L YIHR+GRT R G+ G +++
Sbjct: 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF T+R A + + + G + L G LT R +++F+D + VLI T+V A
Sbjct: 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95
Query: 216 RGLDIRGVKTVINYRMPH------SLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
RG+D++ V V+N+ +P E Y+HR+GRT R GK G++ +M EVD
Sbjct: 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVD 147
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R +L+ L+ D M+F TK E E+ L LG A LHG+++Q R + F
Sbjct: 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
+ E VL+ATDVAARGLDI V V++YRMP E Y H
Sbjct: 75 RQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 56/100 (56%)
Query: 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200
R +L+ L+ D M+F TK E E+ L LG A LHG+L+Q R L F
Sbjct: 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77
Query: 201 KDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH 240
+ E VL+ATDVAARGLDI V V++YR+P E Y H
Sbjct: 78 RQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IFV TK+ A+ ++ L G + LHG+L R + F++ + VLI T+V AR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 217 GLDIRGVKTVINYRMPHSLEH-------YIHRVGRTARAGKGGVSVSM 257
G+DI V V+NY +P +L + YIHR+GRT R G+ GV++S
Sbjct: 306 GIDIPTVSMVVNYDLP-TLANGQADPATYIHRIGRTGRFGRKGVAISF 352
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IFV TK+ A+ ++ L G + LHG+L R + F++ + VLI T+V AR
Sbjct: 246 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305
Query: 217 GLDIRGVKTVINYRMPHSLEH-------YIHRVGRTARAGKGGVSVSM 257
G+DI V V+NY +P +L + YIHR+GRT R G+ GV++S
Sbjct: 306 GIDIPTVSMVVNYDLP-TLANGQADPATYIHRIGRTGRFGRKGVAISF 352
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 8/109 (7%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IFV TK+ A+ ++ L G + LHG+L R + F++ + VLI T+V AR
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 98
Query: 217 GLDIRGVKTVINYRMPHSLEH-------YIHRVGRTARAGKGGVSVSMA 258
G+DI V V+NY +P +L + YIHR+GRT R G+ GV++S
Sbjct: 99 GIDIPTVSXVVNYDLP-TLANGQADPATYIHRIGRTGRFGRKGVAISFV 146
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 8/109 (7%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IFV TK+ A+ ++ L G + LHG+L R + F++ + VLI T+V AR
Sbjct: 40 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 99
Query: 217 GLDIRGVKTVINYRMPHSLEH-------YIHRVGRTARAGKGGVSVSMA 258
G+DI V V+NY +P +L + YIHR+GRT R G+ GV++S
Sbjct: 100 GIDIPTVSXVVNYDLP-TLANGQADPATYIHRIGRTGRFGRKGVAISFV 147
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 8/109 (7%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++IFV TK+ A+ ++ L G + LHG+L R + F++ + VLI T+V AR
Sbjct: 38 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 97
Query: 217 GLDIRGVKTVINYRMPHSLEH-------YIHRVGRTARAGKGGVSVSMA 258
G+DI V V+NY +P +L + YIHR+GRT R G+ GV++S
Sbjct: 98 GIDIPTVSMVVNYDLP-TLANGQADPATYIHRIGRTGRFGRKGVAISFV 145
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
MIF T++ A + L G + L G + R + +F++ + VL+ T+V A
Sbjct: 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394
Query: 216 RGLDIRGVKTVINYRMPHSL------EHYIHRVGRTARAGKGGVSVSM 257
RG+D+ V VIN+ +P E Y+HR+GRT R GK G++V+M
Sbjct: 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
MIF T++ A + L G + L G + R + +F++ + VL+ T+V A
Sbjct: 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327
Query: 216 RGLDIRGVKTVINYRMPHSL------EHYIHRVGRTARAGKGGVSVSMA 258
RG+D+ V VIN+ +P E Y+HR+GRT R GK G++V+M
Sbjct: 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
MIF T++ A + L G + L G + R + +F++ + VL+ T+V A
Sbjct: 284 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 343
Query: 216 RGLDIRGVKTVINYRMPHSL------EHYIHRVGRTARAGKGGVSVSM 257
RG+D+ V VIN+ +P E Y+HR+GRT R GK G++V+M
Sbjct: 344 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 391
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
MIF T++ A + L G + L G + R + +F++ + VL+ T+V A
Sbjct: 305 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 364
Query: 216 RGLDIRGVKTVINYRMPHSL------EHYIHRVGRTARAGKGGVSVSMA 258
RG+D+ V VIN+ +P E Y+HR+GRT R GK G++V+M
Sbjct: 365 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 413
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 135 KDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL 194
KD +RK L L F + +IFV + + + LL A +H + Q RL
Sbjct: 14 KDNEKNRK-LFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 71
Query: 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
++FKD + +L+AT++ RG+DI V NY MP + Y+HRV R R G G++
Sbjct: 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 131
Query: 255 VS-MAGEVDRKLVKQV 269
++ ++ E D K++ V
Sbjct: 132 ITFVSDENDAKILNDV 147
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV + + + LL A +H + Q RL ++FKD + +L+AT++
Sbjct: 251 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS-MAGEVDRKLVKQV 269
RG+DI V NY MP + Y+HRV R R G G++++ ++ E D K++ V
Sbjct: 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 366
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV + + + LL A +H + Q RL ++FKD + +L+AT++
Sbjct: 250 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 309
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS-MAGEVDRKLVKQV 269
RG+DI V NY MP + Y+HRV R R G G++++ ++ E D K++ V
Sbjct: 310 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 365
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ +IFV + + + LL A +H + Q RL ++FKD + +L+AT++
Sbjct: 251 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310
Query: 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS-MAGEVDRKLVKQV 269
RG+DI V NY MP + Y+HRV R R G G++++ ++ E D K++ V
Sbjct: 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 366
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE 204
L L R + ++IF + + + + LG +H + Q R F++
Sbjct: 35 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL 94
Query: 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264
L+ TD+ RG+DI+ V VIN+ P E Y+HR+GR+ R G G+++++ DR
Sbjct: 95 CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRF 154
Query: 265 LVKQV 269
+K +
Sbjct: 155 NLKSI 159
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 69/114 (60%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF+ T+R+ + + +HG++ Q R +R+F+ + VLI TD+ A
Sbjct: 282 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RG+D++ V VINY +P + E+YIHR+GR R G+ GV+++M E D++ ++ +
Sbjct: 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 395
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 69/114 (60%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF+ T+R+ + + +HG++ Q R +R+F+ + VLI TD+ A
Sbjct: 256 QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 315
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269
RG+D++ V VINY +P + E+YIHR+GR R G+ GV+++M E D++ ++ +
Sbjct: 316 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 369
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 177 LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLE 236
LG H + Q R + +F+ + L+ +D+ RG+DI+ V VIN+ P + E
Sbjct: 281 LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAE 340
Query: 237 HYIHRVGRTARAGKGGVSVSMAGEVDR 263
Y+HR+GR+ R G G+++++ DR
Sbjct: 341 TYLHRIGRSGRFGHLGLAINLINWNDR 367
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
++IF K A E+ + G L GNL R + F+ + VL+ T+V A
Sbjct: 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 418
Query: 216 RGLDIRGVKTVINYRMPHSL------EHYIHRVGRTARAGKGGVSVSM 257
RG+D+ V V+NY MP + Y+HR+GRT R G+ GVS++
Sbjct: 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF T+R+ E+ L ++ +L Q R +++F+ + +LI+TD+ A
Sbjct: 32 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262
RG+D++ V VINY +P + E+YIHR+GR R G+ GV+++ D
Sbjct: 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF T+R+ E+ L ++ +L Q R +++F+ + +LI+TD+ A
Sbjct: 262 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 321
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIH 240
RG+D++ V VINY +P + E+YIH
Sbjct: 322 RGIDVQQVSLVINYDLPANKENYIH 346
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215
+IF T+R+ E+ L ++ +L Q R ++F+ + +LI+TD+ A
Sbjct: 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLA 320
Query: 216 RGLDIRGVKTVINYRMPHSLEHYIH 240
RG+D++ V VINY +P + E+YIH
Sbjct: 321 RGIDVQQVSLVINYDLPANKENYIH 345
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+I+ +++++ ++ + L LGI AG H NL + RK+ E V++AT G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
+D V+ VI++ M S+E+Y GR R
Sbjct: 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGR 360
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ TK+ A ++ L GIK LH + R+E +R + + DVL+ ++
Sbjct: 471 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 530
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
GLDI V V R SL I +GR AR G V M + K +
Sbjct: 531 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNANG--HVIMYADTITKSM 585
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK-----IL 321
+ I+ K + R I Y R K P EI D RA A E E+ + +
Sbjct: 586 EIAIQETK---RRRAIQEEYNR-KHGIVPRTVKKEIRDVIRATYAAEETEMYEAKPAAAM 641
Query: 322 TEEKHDRLLNKADEQVSKAEKML 344
T+++ + L+ K + ++ +A K L
Sbjct: 642 TKQEREELIRKLEAEMKEAAKAL 664
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217
+I+ ++ + + L GI A H L R + KF+ ++ +++AT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXG 299
Query: 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
++ V+ V+++ +P ++E Y GR R G
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 178 GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEH 237
GI A H L R + KF+ ++ +++AT G++ V+ V+++ +P ++E
Sbjct: 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIES 319
Query: 238 YIHRVGRTARAG 249
Y GR R G
Sbjct: 320 YYQETGRAGRDG 331
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ TK+ A ++ L GIK LH + R+E +R + + DVL+ ++
Sbjct: 445 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 504
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
GLDI V V R SL I +GR AR G V M + K +
Sbjct: 505 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNANG--HVIMYADTITKSM 559
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK-----IL 321
+ I+ K + R I Y R K P EI D RA A E E+ + +
Sbjct: 560 EIAIQETK---RRRAIQEEYNR-KHGIVPRTVKKEIRDVIRATYAAEETEMYEAKPAAAM 615
Query: 322 TEEKHDRLLNKADEQVSKAEKML 344
T+++ + L+ + ++ +A K L
Sbjct: 616 TKQEREELIRTLEAEMKEAAKAL 638
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ TK+ A ++ L GIK LH + R+E +R + + DVL+ ++
Sbjct: 446 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
GLDI V V R SL I +GR AR G V M + K +
Sbjct: 506 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNANG--HVIMYADTITKSM 560
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK-----IL 321
+ I+ K + R I Y R K P EI D RA A E E+ + +
Sbjct: 561 EIAIQETK---RRRAIQEEYNR-KHGIVPRTVKKEIRDVIRATYAAEETEMYEAKPAAAM 616
Query: 322 TEEKHDRLLNKADEQVSKAEKML 344
T+++ + L+ + ++ +A K L
Sbjct: 617 TKQEREELIRTLEAEMKEAAKAL 639
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ TK+ A ++ L GIK LH + R+E +R + + DVL+ ++
Sbjct: 446 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
GLDI V V R SL I +GR AR G V M + K +
Sbjct: 506 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNANG--HVIMYADTITKSM 560
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK-----IL 321
+ I+ K + R I Y R K P EI D RA A E E+ + +
Sbjct: 561 EIAIQETK---RRRAIQEEYNR-KHGIVPRTVKKEIRDVIRATYAAEETEMYEAKPAAAM 616
Query: 322 TEEKHDRLLNKADEQVSKAEKML 344
T+++ + L+ + ++ +A K L
Sbjct: 617 TKQEREELIRTLEAEMKEAAKAL 639
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ TK+ A ++ L GIK LH + R+E +R + + DVL+ ++
Sbjct: 446 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266
GLDI V V R SL I +GR AR G V M + K +
Sbjct: 506 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNANG--HVIMYADTITKSM 560
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK-----IL 321
+ I+ K + R I Y R K P EI D RA A E E+ + +
Sbjct: 561 EIAIQETK---RRRAIQEEYNR-KHGIVPRTVKKEIRDVIRATYAAEETEMYEAKPAAAM 616
Query: 322 TEEKHDRLLNKADEQVSKAEKML 344
T+++ + L+ + ++ +A K L
Sbjct: 617 TKQEREELIRTLEAEMKEAAKAL 639
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 158 MIFVPTKREAHEMHILL------GLLGIKAGELHGN--------LTQPSRLESLRKFKDE 203
+IF T++ A+ + + +G+KA L G +TQ + E + KF+
Sbjct: 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG 463
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG---VSVSMAGE 260
+ ++LIAT VA GLDI+ VI Y + + + GR ARA + V+ S +G
Sbjct: 464 KINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR-ARADESTYVLVAHSGSGV 522
Query: 261 VDRKLV 266
++R+ V
Sbjct: 523 IERETV 528
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 178 GIKAGELHG--------NLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINY 229
GIKA G L+Q + L +F E +VL+AT V GLD+ V V+ Y
Sbjct: 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFY 444
Query: 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
S I R GRT R G V + MA
Sbjct: 445 EPVPSAIRSIQRRGRTGRHMPGRVIILMA 473
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ ++ TK+ + ++ L +GIK LH + R+E +R + + DVL+ ++
Sbjct: 452 ERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 511
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGV 253
GLDI V V R SL I +GR AR +G V
Sbjct: 512 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNAEGRV 555
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ ++ TK+ + ++ L +GIK LH + R+E +R + + DVL+ ++
Sbjct: 446 ERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505
Query: 215 ARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKGGV 253
GLDI V V R SL I +GR AR +G V
Sbjct: 506 REGLDIPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNAEGRV 549
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 159 IFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD--EETDVLIATDVAAR 216
I +K + + + + + G+++ ++G+L ++L +KF D + +L+ATD
Sbjct: 325 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384
Query: 217 GLDIRGVKTVINYRM--------------PHSLEHYIHRVGRTARAG---KGGVSVSMAG 259
GL++ ++ +I Y + P + + GR R K G +M
Sbjct: 385 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF--PPPPLAEIVDKY 306
E D L+K+++K +P++ + P +++ ++ P L+ ++D +
Sbjct: 444 E-DLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIF 491
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 158 MIFVPTKREAHEMHILL------GLLGIKAGELHGN--------LTQPSRLESLRKFKDE 203
+IF T++ A+ + + +G+KA L G TQ + E + KF+
Sbjct: 154 IIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPXTQNEQREVISKFRTG 213
Query: 204 ETDVLIATDVAARGLDIRGVKTVINYRM 231
+ ++LIAT VA GLDI+ VI Y +
Sbjct: 214 KINLLIATTVAEEGLDIKECNIVIRYGL 241
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 159 IFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD--EETDVLIATDVAAR 216
I +K + + + + + G+++ ++G+L ++L +KF D + +L+ATD
Sbjct: 325 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGX 384
Query: 217 GLDIRGVKTVINYRM--------------PHSLEHYIHRVGRTARAG---KGGVSVSMAG 259
GL++ ++ +I Y + P + + GR R K G V+
Sbjct: 385 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG-EVTTXN 442
Query: 260 EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSF--PPPPLAEIVDKY 306
D L+K+++K +P++ + P +++ ++ P L+ ++D +
Sbjct: 443 HEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPDATLSNLIDIF 491
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ V T R A E+ L GI+A LH L R +R + D L+ ++
Sbjct: 440 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499
Query: 215 ARGLDIRGVKTVI-----NYRMPHSLEHYIHRVGRTARAGKG-------GVSVSMAGEVD 262
GLDI V V S I +GR AR +G VS +M ++
Sbjct: 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIE 559
Query: 263 RKLVKQVIKNAKNPVKHRIIP 283
++ ++ A N ++H I P
Sbjct: 560 ETNRRRALQEAYN-LEHGITP 579
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214
+ T++ V T R A E+ L GI+A LH L R +R + D L+ ++
Sbjct: 441 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 500
Query: 215 ARGLDIRGVKTVI-----NYRMPHSLEHYIHRVGRTARAGKG-------GVSVSMAGEVD 262
GLDI V V S I +GR AR +G VS +M ++
Sbjct: 501 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIE 560
Query: 263 RKLVKQVIKNAKNPVKHRIIP 283
++ ++ A N ++H I P
Sbjct: 561 ETNRRRALQEAYN-LEHGITP 580
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 179 IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI-RGVKTVINYRMPHSLEH 237
K G +HG L+Q + + +F + D+L++T V G+D+ R VI L
Sbjct: 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQ 673
Query: 238 YIHRVGRTARAGKGGVSVSMAGEV 261
GR R G+ + G+V
Sbjct: 674 LHQLRGRVGRGGQEAYCFLVVGDV 697
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 179 IKAGELHG--------NLTQPSRLESLRKFK-DEETDVLIATDVAARGLDIRGVKTVINY 229
IK G L G +T PS+ L FK ++ +LIAT VA G+DI V+ Y
Sbjct: 660 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719
Query: 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261
++ I GR AG + V+ EV
Sbjct: 720 EYSGNVTKMIQVRGRGRAAGSKCILVTSKTEV 751
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 179 IKAGELHG--------NLTQPSRLESLRKFK-DEETDVLIATDVAARGLDIRGVKTVINY 229
IK G L G +T PS+ L FK ++ +LIAT VA G+DI V+ Y
Sbjct: 660 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719
Query: 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261
++ I GR AG + V+ EV
Sbjct: 720 EYSGNVTKMIQVRGRGRAAGSKCILVTSKTEV 751
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 179 IKAGELHG--------NLTQPSRLESLRKFK-DEETDVLIATDVAARGLDIRGVKTVINY 229
IK G L G +T PS+ L FK ++ +LIAT VA G+DI V+ Y
Sbjct: 419 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478
Query: 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261
++ I GR AG + V+ EV
Sbjct: 479 EYSGNVTKMIQVRGRGRAAGSKCILVTSKTEV 510
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 178 GIKAGELHGN----LTQPSRLESLRKFKDE-ETDVLIATDVAARGLDIRGVKTVINYRMP 232
GI G N +T P++ L FK + ++LIAT VA G+DI VI Y
Sbjct: 429 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 488
Query: 233 HSLEHYIHRVGRT-ARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKT 291
++ I GR AR K + S AG ++++ + N K +++ RL+T
Sbjct: 489 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI--------NMYKEKMMNDSILRLQT 540
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVSV--- 255
V IAT++A RG DI+ GV + + + H R+ GR R G G S+
Sbjct: 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFL 584
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
S+ ++ R + I N +K I G P P L+++++ + KVE I
Sbjct: 585 SLEDDLLRIFGSEQIGKVMNILK---IEEGQP------IQHPMLSKLIENIQKKVEGINF 635
Query: 316 EVQKILTEEKHDRLLNKADEQV-SKAEKMLKEK 347
++K L E D +L+K V S +++L EK
Sbjct: 636 SIRKTLME--MDDVLDKQRRAVYSLRDQILLEK 666
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 188 LTQPSRLESLRKFKDE-ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRT- 245
+T P++ L FK + ++LIAT VA G+DI VI Y ++ I GR
Sbjct: 435 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 494
Query: 246 ARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKT 291
AR K + S AG ++++ + N K +++ RL+T
Sbjct: 495 ARGSKCFLLTSNAGVIEKEQI--------NMYKEKMMNDSILRLQT 532
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 178 GIKAGELHGN----LTQPSRLESLRKFKDE-ETDVLIATDVAARGLDIRGVKTVINYRMP 232
GI G N +T P++ L FK + ++LIAT VA G+DI VI Y
Sbjct: 430 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 489
Query: 233 HSLEHYIHRVGRT-ARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKT 291
++ I GR AR K + S AG ++++ + N K +++ RL+T
Sbjct: 490 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI--------NMYKEKMMNDSILRLQT 541
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVSV--- 255
V IAT++A RG DI+ GV + + + H R+ GR R G G S+
Sbjct: 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFL 584
Query: 256 SMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEG 315
S+ ++ R + I N +K I G P P L+++++ + KVE I
Sbjct: 585 SLEDDLLRIFGSEQIGKVMNILK---IEEGQP------IQHPMLSKLIENIQKKVEGINF 635
Query: 316 EVQKILTEEKHDRLLNKADEQV-SKAEKMLKEK 347
++K L E D +L+K V S +++L EK
Sbjct: 636 SIRKTLME--MDDVLDKQRRAVYSLRDQILLEK 666
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212
F+D +IF T+ E E++ L GE + + FK + ++LI
Sbjct: 251 FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK-----NFEDFKVGKINILIGVQ 305
Query: 213 V----AARGLDI-RGVKTVINYRMPHS--LEHYIHRVGRTARAGKG----GVSV 255
RG+D+ +K VI + P + YI GR++R G GVSV
Sbjct: 306 AYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212
F+D +IF T+ E E++ L GE + + FK + ++LI
Sbjct: 250 FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK-----NFEDFKVGKINILIGVQ 304
Query: 213 V----AARGLDI-RGVKTVINYRMPHS--LEHYIHRVGRTARAGKG----GVSV 255
RG+D+ +K VI + P + YI GR++R G GVSV
Sbjct: 305 AYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 358
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
- P2 Form
Length = 415
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212
F+D +IF T+ E E++ L GE + + FK + ++LI
Sbjct: 252 FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK-----NFEDFKVGKINILIGVQ 306
Query: 213 V----AARGLDI-RGVKTVINYRMPHS--LEHYIHRVGRTARAGKG----GVSV 255
RG+D+ +K VI + P + YI GR++R G GVSV
Sbjct: 307 AYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 360
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 190 QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRT-ARA 248
Q LE+ R D ++LIAT VA G+DI VI Y ++ I GR AR
Sbjct: 440 QKCVLEAFRASGD--NNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGRGRARD 497
Query: 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKT 291
K + S A ++ K N +K +I RL+T
Sbjct: 498 SKCFLLTSSADVIE--------KEKANXIKEKIXNESILRLQT 532
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 543 SMEDELMRRF 552
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 480 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 539
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 540 SMEDELMRRF 549
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 480 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 539
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 540 SMEDELMRRF 549
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 480 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 539
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 540 SMEDELMRRF 549
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 480 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 539
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 540 SMEDELMRRF 549
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 207 VLIATDVAARGLDIR---GVKTVINYRMPHSLEHYIHRV-----GRTARAGKGGVS---V 255
V IAT++A RG DI+ GVK + + + H R+ GR+ R G G++ +
Sbjct: 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542
Query: 256 SMAGEVDRKL 265
SM E+ R+
Sbjct: 543 SMEDELMRRF 552
>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori
L-Asparaginase At 1.4 A Resolution
pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori
L- Asparaginase At 1.8 A Resolution
Length = 332
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRII 282
R++R G GGV+ +GE+D K + + NP K R++
Sbjct: 276 RSSRVGSGGVT---SGEIDDKAYGFITSDNLNPQKARVL 311
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 185 HGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRV-G 243
HG + + + F + +VL+ T + G+DI T+I R H +H++ G
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 904
Query: 244 RTARA 248
R R+
Sbjct: 905 RVGRS 909
>pdb|2WH7|A Chain A, The Partial Structure Of A Group A Streptpcoccal Phage-
Encoded Tail Fibre Hyaluronate Lyase Hylp2
Length = 178
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 336 QVSKAEKMLKEKKPLHENPPREWFQTKKERA----AIKTSQAGEGLAALILYLQSHSKT 390
Q+ EK L K HENP + K A +K + G+G AA +Y+ S S T
Sbjct: 52 QIRGVEKALGTLKITHENPSVDKEYDKNAAALSIDIVKKQKGGKGTAAQGIYINSTSGT 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,678,290
Number of Sequences: 62578
Number of extensions: 409148
Number of successful extensions: 1490
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 101
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)