Query psy3145
Match_columns 396
No_of_seqs 381 out of 3783
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:35:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338|consensus 100.0 2.2E-58 4.7E-63 442.5 22.0 307 46-369 300-628 (691)
2 KOG0330|consensus 100.0 3.3E-43 7.1E-48 328.9 16.4 209 24-279 200-425 (476)
3 KOG0328|consensus 100.0 1.4E-41 2.9E-46 306.1 17.7 228 48-279 145-391 (400)
4 KOG0331|consensus 100.0 5.3E-41 1.2E-45 332.0 18.4 210 20-273 231-460 (519)
5 COG0513 SrmB Superfamily II DN 100.0 3.4E-40 7.5E-45 336.6 20.7 191 88-278 190-398 (513)
6 KOG0333|consensus 100.0 2.7E-39 5.8E-44 312.2 17.3 229 24-274 392-637 (673)
7 KOG0340|consensus 100.0 9.3E-37 2E-41 282.7 21.3 216 20-282 145-382 (442)
8 PRK11776 ATP-dependent RNA hel 100.0 8.7E-37 1.9E-41 309.7 22.0 214 25-283 144-371 (460)
9 PRK11634 ATP-dependent RNA hel 100.0 5.9E-36 1.3E-40 311.2 27.4 214 26-284 147-375 (629)
10 KOG0326|consensus 100.0 3.9E-37 8.5E-42 281.5 15.3 228 48-278 203-446 (459)
11 KOG0342|consensus 100.0 1.8E-36 3.9E-41 291.3 19.9 201 24-270 226-446 (543)
12 PRK04837 ATP-dependent RNA hel 100.0 2.5E-36 5.4E-41 303.2 19.8 209 25-278 154-379 (423)
13 PRK10590 ATP-dependent RNA hel 100.0 5.4E-36 1.2E-40 303.2 22.1 210 25-280 146-371 (456)
14 KOG0336|consensus 100.0 1.4E-36 3.1E-41 285.7 16.4 212 16-273 355-584 (629)
15 PRK11192 ATP-dependent RNA hel 100.0 1.9E-35 4.1E-40 297.8 22.3 216 25-284 144-375 (434)
16 PTZ00110 helicase; Provisional 100.0 1.5E-35 3.2E-40 305.2 21.2 205 24-274 273-497 (545)
17 PRK04537 ATP-dependent RNA hel 100.0 2.9E-35 6.3E-40 304.1 21.7 212 26-281 157-384 (572)
18 KOG0345|consensus 100.0 9.5E-36 2E-40 284.6 15.7 200 26-272 155-375 (567)
19 KOG0332|consensus 100.0 7.2E-35 1.6E-39 271.6 17.6 231 50-280 209-463 (477)
20 KOG0343|consensus 100.0 2.9E-34 6.3E-39 278.7 21.5 222 51-279 194-440 (758)
21 PLN00206 DEAD-box ATP-dependen 100.0 1.9E-34 4.2E-39 295.7 21.2 205 24-274 266-488 (518)
22 COG0514 RecQ Superfamily II DN 100.0 9E-34 1.9E-38 285.5 24.5 204 28-274 131-350 (590)
23 PRK01297 ATP-dependent RNA hel 100.0 3.9E-34 8.6E-39 291.2 22.1 210 22-277 231-458 (475)
24 KOG0335|consensus 100.0 1.9E-34 4.1E-39 281.1 17.7 223 2-273 202-456 (482)
25 PTZ00424 helicase 45; Provisio 100.0 4.4E-34 9.6E-39 285.0 20.1 211 25-279 167-392 (401)
26 KOG0341|consensus 100.0 2.1E-35 4.5E-40 276.2 8.4 174 88-262 342-529 (610)
27 PLN03137 ATP-dependent DNA hel 100.0 9.7E-34 2.1E-38 300.4 20.9 201 28-271 581-797 (1195)
28 TIGR00614 recQ_fam ATP-depende 100.0 2.1E-33 4.5E-38 285.3 22.4 205 25-272 124-344 (470)
29 KOG0327|consensus 100.0 2.8E-33 6.1E-38 262.7 17.2 211 63-280 164-389 (397)
30 PRK11057 ATP-dependent DNA hel 100.0 1.4E-32 3.1E-37 286.5 21.7 199 28-270 139-352 (607)
31 KOG0339|consensus 100.0 8.3E-33 1.8E-37 266.2 17.0 204 25-273 367-587 (731)
32 KOG0347|consensus 100.0 3.6E-32 7.9E-37 264.1 20.8 280 45-348 312-639 (731)
33 TIGR03817 DECH_helic helicase/ 100.0 1.4E-31 2.9E-36 283.6 23.3 218 22-279 151-406 (742)
34 TIGR01389 recQ ATP-dependent D 100.0 8.8E-32 1.9E-36 280.8 20.4 201 26-270 125-340 (591)
35 KOG0346|consensus 100.0 1.2E-31 2.5E-36 254.7 18.0 221 47-273 146-422 (569)
36 KOG0348|consensus 100.0 1.1E-31 2.3E-36 260.1 17.7 215 26-274 285-567 (708)
37 KOG0350|consensus 100.0 7E-31 1.5E-35 252.8 12.7 270 21-317 288-586 (620)
38 KOG0334|consensus 100.0 6.3E-30 1.4E-34 265.5 17.4 228 26-313 513-757 (997)
39 KOG0344|consensus 100.0 1E-29 2.3E-34 249.8 16.4 184 88-273 305-507 (593)
40 KOG4284|consensus 100.0 6.6E-30 1.4E-34 252.0 15.0 213 47-262 142-380 (980)
41 KOG0337|consensus 100.0 4.4E-29 9.5E-34 236.1 16.9 193 88-283 180-390 (529)
42 KOG0351|consensus 100.0 3.7E-28 8.1E-33 257.6 17.4 203 29-273 386-604 (941)
43 PHA02653 RNA helicase NPH-II; 99.9 6.9E-27 1.5E-31 243.0 20.1 195 67-270 290-523 (675)
44 KOG0352|consensus 99.9 1.7E-27 3.6E-32 225.7 11.5 203 28-272 141-373 (641)
45 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.3E-26 2.8E-31 246.2 19.0 168 94-264 137-339 (819)
46 TIGR00580 mfd transcription-re 99.9 8.3E-26 1.8E-30 242.4 24.1 176 94-272 590-787 (926)
47 PRK13767 ATP-dependent helicas 99.9 3.2E-26 7E-31 247.1 20.8 195 23-259 167-396 (876)
48 PRK09751 putative ATP-dependen 99.9 6.7E-26 1.5E-30 249.6 23.6 214 4-258 101-382 (1490)
49 PRK10689 transcription-repair 99.9 3.1E-25 6.7E-30 242.7 26.1 164 94-260 739-918 (1147)
50 PRK02362 ski2-like helicase; P 99.9 1.8E-25 4E-30 238.5 19.0 194 25-261 134-397 (737)
51 PRK11664 ATP-dependent RNA hel 99.9 1.5E-25 3.3E-30 238.4 17.7 167 94-263 140-341 (812)
52 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2E-25 4.2E-30 234.0 17.3 166 88-259 185-389 (844)
53 TIGR01587 cas3_core CRISPR-ass 99.9 6.5E-25 1.4E-29 215.8 16.2 157 102-261 154-336 (358)
54 PRK11131 ATP-dependent RNA hel 99.9 1.9E-24 4.1E-29 234.6 16.7 194 23-264 181-414 (1294)
55 PRK10917 ATP-dependent DNA hel 99.9 1.9E-23 4E-28 220.6 23.1 161 97-259 403-587 (681)
56 PRK00254 ski2-like helicase; P 99.9 5.1E-24 1.1E-28 226.9 18.1 193 24-262 134-389 (720)
57 PRK01172 ski2-like helicase; P 99.9 2.4E-23 5.2E-28 220.6 20.6 204 24-271 131-389 (674)
58 TIGR00643 recG ATP-dependent D 99.9 4.7E-23 1E-27 216.1 22.6 107 153-259 447-564 (630)
59 COG1201 Lhr Lhr-like helicases 99.9 3.4E-23 7.3E-28 216.1 17.8 214 4-260 125-361 (814)
60 PRK05298 excinuclease ABC subu 99.9 1.8E-22 4E-27 211.6 21.9 175 153-348 445-633 (652)
61 KOG0329|consensus 99.9 1.2E-24 2.6E-29 194.3 3.7 188 46-273 161-368 (387)
62 PRK04914 ATP-dependent helicas 99.9 2.7E-22 5.8E-27 214.9 20.6 182 139-337 478-664 (956)
63 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.1E-22 2.4E-27 221.5 17.8 195 23-264 174-407 (1283)
64 COG1202 Superfamily II helicas 99.9 4.4E-23 9.6E-28 202.1 12.9 195 24-261 334-553 (830)
65 PHA02558 uvsW UvsW helicase; P 99.9 9.4E-22 2E-26 201.2 19.8 105 154-258 344-449 (501)
66 PRK09401 reverse gyrase; Revie 99.9 1.3E-21 2.8E-26 214.8 15.7 136 103-247 268-430 (1176)
67 PRK14701 reverse gyrase; Provi 99.9 1.4E-21 3E-26 218.9 15.9 171 93-271 258-466 (1638)
68 KOG0349|consensus 99.9 1.6E-21 3.5E-26 185.5 13.3 216 48-264 339-618 (725)
69 KOG0353|consensus 99.9 3.2E-21 6.8E-26 180.9 15.0 191 27-263 214-469 (695)
70 TIGR00631 uvrb excinuclease AB 99.9 1.8E-20 4E-25 195.5 20.6 188 153-350 441-645 (655)
71 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-20 2.3E-25 185.5 17.5 85 153-246 271-357 (357)
72 PRK12898 secA preprotein trans 99.9 5.2E-21 1.1E-25 196.7 14.4 156 105-263 410-588 (656)
73 PRK13766 Hef nuclease; Provisi 99.8 6.3E-20 1.4E-24 197.6 20.6 122 140-262 347-480 (773)
74 TIGR01054 rgy reverse gyrase. 99.8 1E-19 2.2E-24 200.1 20.8 135 91-233 252-409 (1171)
75 COG1111 MPH1 ERCC4-like helica 99.8 5.9E-20 1.3E-24 178.9 15.0 124 141-265 349-485 (542)
76 TIGR00603 rad25 DNA repair hel 99.8 5.4E-19 1.2E-23 183.9 20.9 119 140-263 480-609 (732)
77 KOG0354|consensus 99.8 3.2E-19 6.9E-24 182.7 17.5 124 141-266 396-534 (746)
78 COG0556 UvrB Helicase subunit 99.8 5.3E-19 1.2E-23 172.7 16.8 228 103-350 386-646 (663)
79 cd00079 HELICc Helicase superf 99.8 3.5E-19 7.5E-24 148.8 12.7 118 140-257 12-131 (131)
80 PRK09200 preprotein translocas 99.8 2.8E-19 6.1E-24 187.6 14.2 123 139-263 411-543 (790)
81 PF00271 Helicase_C: Helicase 99.8 4E-19 8.6E-24 135.6 8.3 78 172-249 1-78 (78)
82 COG1204 Superfamily II helicas 99.8 9.5E-18 2.1E-22 177.2 17.7 194 25-259 143-406 (766)
83 TIGR03714 secA2 accessory Sec 99.8 4.9E-18 1.1E-22 176.9 14.2 123 138-263 406-539 (762)
84 PRK09694 helicase Cas3; Provis 99.7 2.3E-17 4.9E-22 176.1 17.3 105 143-250 548-664 (878)
85 COG1200 RecG RecG-like helicas 99.7 7.6E-17 1.6E-21 163.3 19.4 165 95-262 402-592 (677)
86 KOG0922|consensus 99.7 4.9E-17 1.1E-21 163.2 17.8 168 94-263 187-392 (674)
87 TIGR00963 secA preprotein tran 99.7 3.7E-17 8.1E-22 169.4 17.5 124 139-264 388-520 (745)
88 COG1643 HrpA HrpA-like helicas 99.7 1.3E-17 2.8E-22 175.8 13.1 170 93-263 185-389 (845)
89 COG1205 Distinct helicase fami 99.7 2.3E-17 5E-22 176.4 15.1 206 16-259 183-420 (851)
90 PRK12906 secA preprotein trans 99.7 1.5E-16 3.3E-21 166.3 18.7 123 139-263 423-555 (796)
91 KOG0923|consensus 99.7 2.7E-16 5.9E-21 156.8 18.4 258 93-356 401-724 (902)
92 TIGR00595 priA primosomal prot 99.7 4.7E-16 1E-20 158.7 20.2 103 167-269 271-389 (505)
93 KOG0950|consensus 99.7 6.2E-17 1.3E-21 167.5 12.8 226 7-274 321-624 (1008)
94 PRK05580 primosome assembly pr 99.7 9.6E-16 2.1E-20 161.7 20.9 106 166-271 438-559 (679)
95 PRK12900 secA preprotein trans 99.7 4.5E-16 9.7E-21 164.0 17.5 124 139-264 581-714 (1025)
96 KOG0952|consensus 99.7 3.3E-16 7.1E-21 163.0 16.2 223 5-267 215-497 (1230)
97 KOG0947|consensus 99.7 9.5E-16 2.1E-20 158.1 19.1 119 154-272 567-736 (1248)
98 COG1197 Mfd Transcription-repa 99.7 5.9E-16 1.3E-20 164.8 17.9 203 46-261 695-913 (1139)
99 smart00490 HELICc helicase sup 99.7 3.3E-16 7.3E-21 119.6 8.9 81 169-249 2-82 (82)
100 KOG0948|consensus 99.7 2.5E-16 5.5E-21 158.8 9.8 121 155-275 384-554 (1041)
101 COG1061 SSL2 DNA or RNA helica 99.7 3E-15 6.5E-20 150.8 17.5 104 143-247 271-375 (442)
102 COG4098 comFA Superfamily II D 99.6 3.6E-15 7.9E-20 139.0 15.0 209 45-266 184-421 (441)
103 PLN03142 Probable chromatin-re 99.6 3.2E-14 7E-19 153.7 16.5 193 139-337 470-671 (1033)
104 KOG0951|consensus 99.6 2.3E-14 4.9E-19 151.4 12.8 167 102-268 473-709 (1674)
105 KOG0924|consensus 99.5 3.3E-14 7.2E-19 142.4 12.3 158 102-260 499-696 (1042)
106 COG4581 Superfamily II RNA hel 99.5 5.8E-13 1.3E-17 142.0 22.3 119 154-272 379-550 (1041)
107 COG1203 CRISPR-associated heli 99.5 5.1E-14 1.1E-18 150.0 12.5 117 153-272 439-561 (733)
108 PRK11448 hsdR type I restricti 99.5 5E-13 1.1E-17 146.8 20.5 95 154-250 698-802 (1123)
109 KOG0385|consensus 99.5 1.1E-13 2.3E-18 140.5 11.8 145 139-285 470-623 (971)
110 KOG0926|consensus 99.5 2.3E-13 4.9E-18 138.5 11.8 128 182-313 608-762 (1172)
111 PRK12904 preprotein translocas 99.4 4.5E-12 9.8E-17 133.6 19.3 124 138-263 412-575 (830)
112 KOG0920|consensus 99.4 2.5E-12 5.5E-17 135.8 12.1 166 94-261 311-544 (924)
113 PRK13104 secA preprotein trans 99.4 2.3E-11 4.9E-16 128.6 19.1 123 139-263 427-589 (896)
114 KOG0384|consensus 99.4 1.9E-12 4.2E-17 137.1 10.2 194 141-336 684-889 (1373)
115 PRK13107 preprotein translocas 99.3 2.8E-11 6.1E-16 127.6 17.7 122 140-263 433-593 (908)
116 KOG0953|consensus 99.3 8.2E-11 1.8E-15 116.2 15.0 137 145-284 348-499 (700)
117 KOG4150|consensus 99.3 8.6E-11 1.9E-15 116.1 14.1 174 91-266 434-647 (1034)
118 KOG0925|consensus 99.2 8.8E-11 1.9E-15 114.3 13.3 161 93-260 182-386 (699)
119 COG1198 PriA Primosomal protei 99.0 1.2E-08 2.6E-13 107.0 19.2 95 178-272 506-614 (730)
120 KOG0391|consensus 99.0 2.1E-09 4.6E-14 113.5 11.8 133 139-273 1259-1397(1958)
121 PRK12903 secA preprotein trans 98.8 7.9E-08 1.7E-12 101.2 14.9 121 140-263 410-541 (925)
122 TIGR00348 hsdR type I site-spe 98.8 5.1E-07 1.1E-11 95.8 20.7 106 154-260 514-650 (667)
123 KOG0392|consensus 98.8 6.3E-08 1.4E-12 103.4 12.5 122 139-260 1309-1453(1549)
124 COG1110 Reverse gyrase [DNA re 98.7 1E-07 2.3E-12 100.6 13.5 85 142-232 324-416 (1187)
125 COG4096 HsdR Type I site-speci 98.7 5.4E-08 1.2E-12 101.0 10.6 103 144-248 412-525 (875)
126 PRK12326 preprotein translocas 98.7 2E-07 4.4E-12 96.8 14.7 121 140-263 411-549 (764)
127 KOG0387|consensus 98.7 7.2E-08 1.6E-12 99.2 10.8 134 139-272 529-672 (923)
128 PRK12899 secA preprotein trans 98.7 9.2E-07 2E-11 94.2 17.6 121 140-263 552-683 (970)
129 KOG0390|consensus 98.7 2.3E-07 4.9E-12 97.2 12.9 119 139-257 577-701 (776)
130 KOG0388|consensus 98.6 8.6E-08 1.9E-12 97.4 8.9 123 138-260 1026-1153(1185)
131 TIGR02562 cas3_yersinia CRISPR 98.6 1.1E-06 2.3E-11 94.6 16.0 92 157-251 759-882 (1110)
132 KOG0389|consensus 98.6 3.5E-07 7.6E-12 94.2 11.3 124 139-262 760-889 (941)
133 KOG1000|consensus 98.6 3.9E-07 8.5E-12 89.5 11.1 121 153-273 491-617 (689)
134 PRK12901 secA preprotein trans 98.6 2E-06 4.4E-11 92.1 16.8 122 140-263 612-743 (1112)
135 TIGR01407 dinG_rel DnaQ family 98.5 8.1E-07 1.8E-11 97.0 13.7 120 153-273 673-828 (850)
136 KOG0386|consensus 98.5 3.5E-07 7.5E-12 96.3 9.7 146 139-284 709-861 (1157)
137 PF06862 DUF1253: Protein of u 98.5 4.1E-06 9E-11 83.3 16.9 229 20-270 153-424 (442)
138 KOG1123|consensus 98.5 2.2E-06 4.8E-11 84.4 14.2 105 153-262 542-654 (776)
139 COG0553 HepA Superfamily II DN 98.5 1.7E-06 3.7E-11 94.7 14.3 118 140-257 692-816 (866)
140 KOG0949|consensus 98.5 3.5E-07 7.5E-12 96.0 8.1 92 180-273 964-1058(1330)
141 PRK13103 secA preprotein trans 98.4 1.9E-06 4.1E-11 91.7 11.6 121 140-263 433-593 (913)
142 CHL00122 secA preprotein trans 98.2 6E-05 1.3E-09 80.2 18.2 68 152-221 422-491 (870)
143 PF13307 Helicase_C_2: Helicas 98.2 9.8E-06 2.1E-10 71.0 9.3 107 152-260 7-149 (167)
144 PRK08074 bifunctional ATP-depe 98.1 7E-05 1.5E-09 82.5 17.2 121 153-273 751-907 (928)
145 PRK07246 bifunctional ATP-depe 98.1 0.00014 3.1E-09 78.9 18.5 118 153-274 646-798 (820)
146 COG1199 DinG Rad3-related DNA 98.0 3.6E-05 7.9E-10 81.9 12.3 110 144-257 470-614 (654)
147 PRK11747 dinG ATP-dependent DN 98.0 0.00024 5.3E-09 75.9 17.9 116 153-273 533-688 (697)
148 PRK12902 secA preprotein trans 98.0 0.00032 7E-09 74.8 17.4 80 140-221 423-506 (939)
149 KOG1002|consensus 97.9 6.7E-05 1.5E-09 74.1 10.8 121 141-261 621-749 (791)
150 KOG1015|consensus 97.9 4.1E-05 8.8E-10 80.7 9.7 119 139-257 1125-1271(1567)
151 TIGR00604 rad3 DNA repair heli 97.8 0.00062 1.4E-08 73.1 16.5 106 153-259 521-672 (705)
152 PRK14873 primosome assembly pr 97.7 0.0014 3.1E-08 69.3 17.3 74 195-271 463-548 (665)
153 KOG0951|consensus 97.7 0.00099 2.2E-08 72.6 15.6 200 24-269 1249-1502(1674)
154 cd00268 DEADc DEAD-box helicas 97.7 3.1E-05 6.6E-10 69.6 3.1 59 24-126 139-202 (203)
155 PF02399 Herpes_ori_bp: Origin 97.5 0.0017 3.7E-08 68.7 13.2 109 144-259 271-386 (824)
156 KOG0921|consensus 97.4 0.0002 4.3E-09 75.3 5.3 128 151-282 640-792 (1282)
157 KOG4439|consensus 97.3 0.0017 3.8E-08 66.9 11.0 118 140-257 729-852 (901)
158 TIGR00596 rad1 DNA repair prot 97.2 0.0025 5.5E-08 68.7 10.8 51 209-262 431-515 (814)
159 PF13871 Helicase_C_4: Helicas 97.1 0.0018 3.9E-08 60.9 8.4 79 195-273 52-142 (278)
160 COG4889 Predicted helicase [Ge 97.1 0.00065 1.4E-08 71.5 5.1 103 155-257 461-584 (1518)
161 COG0653 SecA Preprotein transl 97.0 0.0029 6.2E-08 67.4 9.2 119 141-262 414-546 (822)
162 smart00492 HELICc3 helicase su 96.9 0.013 2.7E-07 49.8 10.3 49 184-232 27-78 (141)
163 PF00270 DEAD: DEAD/DEAH box h 96.8 0.00041 8.9E-09 60.1 0.9 48 26-117 117-166 (169)
164 smart00491 HELICc2 helicase su 96.8 0.012 2.7E-07 49.9 9.6 66 167-232 4-79 (142)
165 TIGR03117 cas_csf4 CRISPR-asso 96.8 0.021 4.5E-07 60.1 13.2 86 144-232 461-560 (636)
166 KOG1016|consensus 96.7 0.0066 1.4E-07 63.4 8.7 117 154-270 719-856 (1387)
167 PRK10917 ATP-dependent DNA hel 95.9 0.054 1.2E-06 58.1 10.9 78 153-230 309-391 (681)
168 PRK05580 primosome assembly pr 95.7 0.098 2.1E-06 56.0 11.7 76 154-230 190-266 (679)
169 COG1110 Reverse gyrase [DNA re 95.5 0.046 1E-06 59.1 8.2 74 141-214 112-191 (1187)
170 smart00487 DEXDc DEAD-like hel 95.4 0.015 3.1E-07 50.9 3.7 27 91-117 148-174 (201)
171 TIGR00595 priA primosomal prot 95.3 0.089 1.9E-06 54.3 9.4 76 154-230 25-101 (505)
172 TIGR00643 recG ATP-dependent D 95.3 0.085 1.9E-06 56.0 9.3 78 153-230 283-365 (630)
173 KOG1001|consensus 95.1 0.0046 9.9E-08 65.3 -0.6 101 156-256 541-643 (674)
174 TIGR00580 mfd transcription-re 94.8 0.19 4E-06 55.6 10.5 77 154-230 500-581 (926)
175 COG1200 RecG RecG-like helicas 94.7 0.16 3.6E-06 53.0 9.2 151 151-310 308-470 (677)
176 PRK14873 primosome assembly pr 94.5 0.15 3.2E-06 54.3 8.6 90 140-230 172-265 (665)
177 KOG0701|consensus 94.2 0.03 6.5E-07 63.8 2.9 95 155-249 293-399 (1606)
178 COG1198 PriA Primosomal protei 94.1 0.15 3.3E-06 54.4 7.7 90 138-228 227-319 (730)
179 PRK10689 transcription-repair 93.6 0.33 7.1E-06 54.9 9.5 76 153-228 648-728 (1147)
180 COG0513 SrmB Superfamily II DN 93.3 0.4 8.6E-06 49.7 8.9 68 157-228 102-180 (513)
181 PF04851 ResIII: Type III rest 93.2 0.12 2.6E-06 44.8 4.3 19 94-114 165-183 (184)
182 KOG1513|consensus 93.0 0.15 3.3E-06 53.8 5.4 75 197-271 850-936 (1300)
183 PRK14701 reverse gyrase; Provi 92.8 0.39 8.4E-06 56.1 8.7 61 153-213 121-187 (1638)
184 KOG2340|consensus 92.7 0.62 1.3E-05 47.3 8.9 117 154-270 552-677 (698)
185 cd00046 DEXDc DEAD-like helica 92.4 0.074 1.6E-06 43.4 1.9 17 97-113 128-144 (144)
186 cd00268 DEADc DEAD-box helicas 92.3 4.7 0.0001 35.6 13.7 74 153-230 68-151 (203)
187 KOG0331|consensus 92.1 1.6 3.5E-05 44.7 11.1 90 154-247 165-272 (519)
188 KOG0347|consensus 91.6 0.9 2E-05 46.4 8.5 53 156-212 265-321 (731)
189 KOG0343|consensus 91.3 0.18 3.8E-06 51.4 3.3 90 28-117 215-353 (758)
190 PRK11776 ATP-dependent RNA hel 90.9 1 2.2E-05 45.9 8.5 73 154-230 72-155 (460)
191 TIGR00614 recQ_fam ATP-depende 90.0 2.3 4.9E-05 43.6 10.2 75 154-228 51-133 (470)
192 PRK11634 ATP-dependent RNA hel 90.0 1.3 2.9E-05 47.0 8.7 71 154-228 74-155 (629)
193 COG1111 MPH1 ERCC4-like helica 90.0 6.2 0.00013 40.1 12.7 118 154-276 58-189 (542)
194 TIGR01054 rgy reverse gyrase. 89.9 1.1 2.5E-05 50.8 8.5 77 154-230 121-207 (1171)
195 TIGR01389 recQ ATP-dependent D 89.5 2.7 5.9E-05 44.3 10.6 60 154-213 53-112 (591)
196 COG1197 Mfd Transcription-repa 89.3 1.7 3.8E-05 48.3 9.0 77 152-228 641-722 (1139)
197 KOG0339|consensus 88.1 5.7 0.00012 40.5 10.9 70 155-228 296-376 (731)
198 KOG0330|consensus 86.9 2.8 6.2E-05 41.1 7.8 83 141-227 116-209 (476)
199 PRK11192 ATP-dependent RNA hel 86.4 5.4 0.00012 40.2 10.2 73 154-230 73-155 (434)
200 PF07652 Flavi_DEAD: Flaviviru 84.7 1 2.2E-05 38.3 3.2 15 103-117 126-140 (148)
201 PF10593 Z1: Z1 domain; Inter 84.1 5.4 0.00012 36.9 8.1 96 168-270 101-202 (239)
202 PF00270 DEAD: DEAD/DEAH box h 84.0 25 0.00053 29.7 13.8 101 153-257 43-158 (169)
203 PRK04537 ATP-dependent RNA hel 84.0 5.7 0.00012 41.8 9.3 70 155-228 85-165 (572)
204 PRK11057 ATP-dependent DNA hel 83.4 8.9 0.00019 40.7 10.5 59 154-212 65-123 (607)
205 PRK10590 ATP-dependent RNA hel 83.0 10 0.00022 38.5 10.5 71 156-230 77-157 (456)
206 PRK04837 ATP-dependent RNA hel 82.8 11 0.00024 37.9 10.5 72 155-230 84-165 (423)
207 PLN03137 ATP-dependent DNA hel 82.1 10 0.00022 42.7 10.5 60 154-213 500-561 (1195)
208 KOG0298|consensus 81.5 3.1 6.7E-05 46.6 6.2 96 154-254 1221-1317(1394)
209 TIGR00963 secA preprotein tran 81.4 6.1 0.00013 42.5 8.2 63 145-213 88-154 (745)
210 KOG0338|consensus 81.0 9.7 0.00021 38.9 8.9 85 143-231 238-336 (691)
211 PRK01297 ATP-dependent RNA hel 80.7 9.9 0.00021 38.9 9.4 71 155-228 163-243 (475)
212 cd01524 RHOD_Pyr_redox Member 80.7 2.8 6.2E-05 32.0 4.2 36 154-189 51-86 (90)
213 PRK12898 secA preprotein trans 80.0 12 0.00025 40.0 9.7 74 146-226 136-213 (656)
214 KOG0389|consensus 80.0 10 0.00022 40.8 9.0 76 139-217 433-512 (941)
215 smart00450 RHOD Rhodanese Homo 78.2 5 0.00011 30.3 5.0 39 152-190 54-93 (100)
216 PRK09401 reverse gyrase; Revie 78.1 7.5 0.00016 44.4 8.1 60 153-212 122-187 (1176)
217 cd01523 RHOD_Lact_B Member of 76.3 3.8 8.3E-05 31.8 3.9 38 153-190 60-97 (100)
218 KOG1133|consensus 74.2 68 0.0015 34.3 13.0 103 154-259 629-778 (821)
219 COG0514 RecQ Superfamily II DN 72.9 9.1 0.0002 40.1 6.5 59 154-212 57-115 (590)
220 cd01529 4RHOD_Repeats Member o 72.5 7.1 0.00015 30.1 4.5 38 152-189 54-92 (96)
221 PRK13104 secA preprotein trans 72.5 15 0.00033 40.3 8.3 68 146-220 115-186 (896)
222 PTZ00110 helicase; Provisional 72.0 26 0.00057 36.6 9.9 72 155-230 204-285 (545)
223 PRK13766 Hef nuclease; Provisi 71.8 16 0.00035 39.8 8.6 74 152-230 56-139 (773)
224 PRK04914 ATP-dependent helicas 71.7 4.4 9.6E-05 45.1 4.1 15 28-42 272-286 (956)
225 cd01518 RHOD_YceA Member of th 71.6 8.2 0.00018 30.0 4.7 38 152-189 59-97 (101)
226 COG3587 Restriction endonuclea 71.1 8.6 0.00019 41.6 5.9 72 203-274 482-566 (985)
227 PF13872 AAA_34: P-loop contai 70.6 6.3 0.00014 37.7 4.4 24 93-117 201-224 (303)
228 KOG0383|consensus 69.8 3.2 7E-05 44.1 2.5 77 140-217 615-696 (696)
229 PF00176 SNF2_N: SNF2 family N 69.5 4.9 0.00011 37.7 3.6 15 28-42 134-148 (299)
230 KOG0329|consensus 68.6 12 0.00025 34.9 5.4 88 154-245 110-213 (387)
231 cd00046 DEXDc DEAD-like helica 68.3 34 0.00075 27.0 8.1 57 153-213 29-88 (144)
232 cd00032 CASc Caspase, interleu 67.7 71 0.0015 29.4 10.8 85 153-243 8-108 (243)
233 TIGR03817 DECH_helic helicase/ 67.7 17 0.00037 39.6 7.5 89 153-246 80-188 (742)
234 KOG0335|consensus 67.6 13 0.00027 37.9 6.0 70 155-228 153-232 (482)
235 cd01534 4RHOD_Repeat_3 Member 67.4 8.1 0.00018 29.7 3.8 36 154-189 56-91 (95)
236 cd01526 RHOD_ThiF Member of th 66.5 7.8 0.00017 31.5 3.7 38 153-190 71-110 (122)
237 KOG1132|consensus 66.1 68 0.0015 35.2 11.2 107 151-259 558-720 (945)
238 PF04364 DNA_pol3_chi: DNA pol 65.7 28 0.00061 29.2 7.0 80 142-232 15-96 (137)
239 PRK09200 preprotein translocas 64.6 22 0.00047 38.9 7.5 62 145-212 110-176 (790)
240 cd01533 4RHOD_Repeat_2 Member 64.5 9.7 0.00021 30.1 3.9 38 153-190 65-104 (109)
241 cd01520 RHOD_YbbB Member of th 64.1 9.3 0.0002 31.4 3.8 38 153-190 85-123 (128)
242 smart00115 CASc Caspase, inter 64.0 62 0.0014 29.8 9.6 84 153-242 7-106 (241)
243 KOG0334|consensus 63.7 19 0.00041 39.8 6.8 60 155-220 439-502 (997)
244 cd01521 RHOD_PspE2 Member of t 63.6 11 0.00025 29.8 4.1 38 153-190 63-102 (110)
245 PRK13103 secA preprotein trans 63.1 28 0.0006 38.4 7.9 74 141-221 110-187 (913)
246 cd01528 RHOD_2 Member of the R 62.9 11 0.00024 29.3 3.9 38 153-190 57-95 (101)
247 cd01527 RHOD_YgaP Member of th 62.9 13 0.00027 28.7 4.2 37 153-189 53-90 (99)
248 PRK09751 putative ATP-dependen 62.9 27 0.00059 40.8 8.3 73 154-230 37-132 (1490)
249 KOG4284|consensus 62.3 3.1 6.8E-05 43.5 0.7 32 26-57 165-198 (980)
250 cd01532 4RHOD_Repeat_1 Member 61.8 14 0.0003 28.3 4.2 36 154-189 50-88 (92)
251 PLN00206 DEAD-box ATP-dependen 61.8 57 0.0012 33.8 9.9 73 154-230 196-278 (518)
252 PRK12899 secA preprotein trans 61.7 49 0.0011 36.7 9.5 60 154-220 135-198 (970)
253 cd01519 RHOD_HSP67B2 Member of 61.6 11 0.00023 29.4 3.6 37 153-189 65-102 (106)
254 PRK02362 ski2-like helicase; P 61.0 27 0.00058 38.0 7.6 71 153-230 66-145 (737)
255 smart00487 DEXDc DEAD-like hel 61.0 1E+02 0.0022 26.0 10.2 71 154-228 54-135 (201)
256 PRK05728 DNA polymerase III su 60.8 60 0.0013 27.3 8.2 82 138-231 11-94 (142)
257 cd01525 RHOD_Kc Member of the 60.8 15 0.00032 28.6 4.2 36 154-189 65-101 (105)
258 cd01449 TST_Repeat_2 Thiosulfa 60.2 20 0.00043 28.5 5.0 37 153-189 77-114 (118)
259 cd01447 Polysulfide_ST Polysul 59.6 11 0.00023 29.2 3.2 38 153-190 60-98 (103)
260 KOG0340|consensus 59.4 20 0.00044 35.0 5.5 65 144-212 65-133 (442)
261 PLN02955 8-amino-7-oxononanoat 58.8 51 0.0011 33.8 8.6 47 155-201 393-456 (476)
262 PRK12904 preprotein translocas 58.1 35 0.00076 37.4 7.7 70 144-220 112-185 (830)
263 cd01444 GlpE_ST GlpE sulfurtra 57.3 16 0.00035 27.7 3.9 37 153-189 55-92 (96)
264 PF01751 Toprim: Toprim domain 55.1 14 0.00031 28.8 3.2 64 157-220 1-76 (100)
265 cd01448 TST_Repeat_1 Thiosulfa 54.7 26 0.00056 28.1 4.8 38 153-190 78-117 (122)
266 PRK05320 rhodanese superfamily 54.0 25 0.00055 32.9 5.2 39 153-191 174-213 (257)
267 KOG0346|consensus 53.8 6.6 0.00014 39.3 1.3 33 24-56 166-199 (569)
268 KOG0350|consensus 52.3 35 0.00077 34.9 6.0 77 154-230 215-303 (620)
269 PTZ00424 helicase 45; Provisio 51.1 89 0.0019 30.8 9.0 73 154-230 96-178 (401)
270 PRK13767 ATP-dependent helicas 50.5 52 0.0011 36.6 7.7 72 155-230 85-180 (876)
271 PLN03142 Probable chromatin-re 50.0 16 0.00034 41.2 3.5 15 29-43 292-306 (1033)
272 PRK15483 type III restriction- 49.5 17 0.00036 40.5 3.6 71 204-274 501-581 (986)
273 cd01535 4RHOD_Repeat_4 Member 49.1 49 0.0011 27.9 5.8 38 153-190 48-86 (145)
274 PRK00254 ski2-like helicase; P 46.9 82 0.0018 34.1 8.5 70 154-230 68-146 (720)
275 PRK10287 thiosulfate:cyanide s 46.2 36 0.00078 27.0 4.2 36 154-189 60-95 (104)
276 PF11496 HDA2-3: Class II hist 46.2 2.3E+02 0.005 27.1 10.5 126 139-264 95-248 (297)
277 cd01522 RHOD_1 Member of the R 45.5 31 0.00067 27.7 3.9 38 153-190 63-101 (117)
278 COG1204 Superfamily II helicas 45.3 74 0.0016 34.8 7.7 83 154-243 76-175 (766)
279 cd00561 CobA_CobO_BtuR ATP:cor 44.9 33 0.00071 29.6 4.1 32 91-122 116-147 (159)
280 PF09848 DUF2075: Uncharacteri 44.7 9.5 0.00021 37.4 0.8 19 24-42 79-97 (352)
281 PRK01172 ski2-like helicase; P 44.4 90 0.002 33.5 8.3 68 154-228 65-141 (674)
282 TIGR00696 wecB_tagA_cpsF bacte 44.4 1.4E+02 0.0031 26.1 8.1 67 143-209 35-105 (177)
283 PF12683 DUF3798: Protein of u 43.9 2.8E+02 0.0062 26.1 12.1 130 130-284 36-173 (275)
284 PRK01415 hypothetical protein; 43.8 42 0.0009 31.3 4.9 40 152-191 169-209 (247)
285 COG1205 Distinct helicase fami 43.8 1.8E+02 0.0038 32.4 10.4 114 141-259 103-239 (851)
286 PLN02160 thiosulfate sulfurtra 43.3 36 0.00078 28.3 4.0 38 153-190 80-118 (136)
287 cd00158 RHOD Rhodanese Homolog 42.8 48 0.001 24.3 4.4 38 152-189 48-86 (89)
288 KOG0328|consensus 41.1 7 0.00015 36.9 -0.7 22 27-48 168-189 (400)
289 KOG0949|consensus 41.0 26 0.00056 38.8 3.4 20 24-43 628-647 (1330)
290 TIGR03714 secA2 accessory Sec 40.8 1.4E+02 0.0031 32.5 8.9 62 145-212 102-172 (762)
291 smart00493 TOPRIM topoisomeras 40.5 1.1E+02 0.0024 22.0 5.9 59 157-217 2-60 (76)
292 TIGR02981 phageshock_pspE phag 40.1 49 0.0011 26.0 4.2 36 154-189 58-93 (101)
293 PF02142 MGS: MGS-like domain 39.9 33 0.00071 26.5 3.1 43 171-213 23-69 (95)
294 TIGR00596 rad1 DNA repair prot 39.7 1.2E+02 0.0027 33.4 8.3 76 93-193 52-127 (814)
295 TIGR03865 PQQ_CXXCW PQQ-depend 39.7 64 0.0014 27.8 5.1 39 152-190 114-154 (162)
296 smart00851 MGS MGS-like domain 39.2 43 0.00093 25.5 3.6 42 171-213 23-64 (90)
297 cd03031 GRX_GRX_like Glutaredo 39.1 1.6E+02 0.0035 25.0 7.4 46 156-201 1-53 (147)
298 KOG0345|consensus 38.8 70 0.0015 32.6 5.7 70 156-228 81-163 (567)
299 PF13245 AAA_19: Part of AAA d 37.8 81 0.0018 23.3 4.8 32 154-186 42-74 (76)
300 COG0607 PspE Rhodanese-related 37.7 34 0.00074 26.5 2.9 38 153-190 60-98 (110)
301 PRK00162 glpE thiosulfate sulf 37.4 47 0.001 26.0 3.7 38 153-190 57-95 (108)
302 PF03808 Glyco_tran_WecB: Glyc 37.2 2E+02 0.0044 24.9 8.0 56 154-209 48-106 (172)
303 PF00581 Rhodanese: Rhodanese- 36.8 49 0.0011 25.6 3.8 37 154-190 67-109 (113)
304 cd01445 TST_Repeats Thiosulfat 36.8 87 0.0019 26.1 5.4 37 153-189 94-134 (138)
305 COG0135 TrpF Phosphoribosylant 36.3 2.8E+02 0.0061 25.1 8.8 58 141-200 39-97 (208)
306 cd01530 Cdc25 Cdc25 phosphatas 35.6 51 0.0011 26.7 3.7 37 153-189 67-117 (121)
307 cd06533 Glyco_transf_WecG_TagA 35.3 2.3E+02 0.005 24.5 8.0 56 154-209 46-104 (171)
308 PRK00142 putative rhodanese-re 34.8 65 0.0014 31.1 4.8 40 152-191 169-209 (314)
309 KOG0342|consensus 34.7 96 0.0021 31.7 6.0 55 154-212 154-213 (543)
310 TIGR00162 conserved hypothetic 34.4 3.3E+02 0.0071 24.1 10.3 86 165-260 34-121 (188)
311 KOG0351|consensus 33.9 84 0.0018 35.1 6.0 119 156-277 306-446 (941)
312 cd05212 NAD_bind_m-THF_DH_Cycl 33.9 2.2E+02 0.0048 23.9 7.4 74 153-233 27-103 (140)
313 TIGR00708 cobA cob(I)alamin ad 33.8 48 0.001 29.0 3.4 33 91-123 118-150 (173)
314 smart00488 DEXDc2 DEAD-like he 33.8 20 0.00043 34.1 1.1 14 29-42 237-250 (289)
315 smart00489 DEXDc3 DEAD-like he 33.8 20 0.00043 34.1 1.1 14 29-42 237-250 (289)
316 TIGR00631 uvrb excinuclease AB 33.7 3.6E+02 0.0078 29.0 10.6 106 140-246 41-177 (655)
317 PRK11493 sseA 3-mercaptopyruva 33.7 81 0.0017 29.7 5.3 37 154-190 231-268 (281)
318 cd01080 NAD_bind_m-THF_DH_Cycl 33.2 2.5E+02 0.0055 24.3 7.9 77 152-236 42-122 (168)
319 PF14617 CMS1: U3-containing 9 33.1 93 0.002 29.1 5.4 87 155-244 127-235 (252)
320 COG2927 HolC DNA polymerase II 33.0 2.6E+02 0.0056 23.7 7.5 78 144-232 17-96 (144)
321 PRK11784 tRNA 2-selenouridine 32.4 1.3E+02 0.0027 29.6 6.5 48 153-201 87-135 (345)
322 KOG0385|consensus 32.4 2.6E+02 0.0056 30.6 8.9 71 140-212 202-275 (971)
323 PRK10310 PTS system galactitol 32.0 2.2E+02 0.0049 21.9 6.6 60 156-222 4-69 (94)
324 cd03027 GRX_DEP Glutaredoxin ( 31.9 1.9E+02 0.0041 20.6 7.4 56 156-211 2-58 (73)
325 KOG0326|consensus 31.3 22 0.00047 34.3 0.9 33 24-56 223-256 (459)
326 TIGR01069 mutS2 MutS2 family p 31.2 2.7E+02 0.006 30.5 9.4 32 184-215 411-446 (771)
327 KOG0348|consensus 31.1 26 0.00055 36.2 1.4 56 45-101 259-316 (708)
328 KOG1255|consensus 31.0 1.9E+02 0.0041 26.9 6.7 92 143-248 85-182 (329)
329 PRK05298 excinuclease ABC subu 30.8 4.7E+02 0.01 28.1 11.0 106 140-246 44-180 (652)
330 PRK06893 DNA replication initi 30.0 62 0.0013 29.5 3.7 59 92-150 112-175 (229)
331 PRK12326 preprotein translocas 29.7 1.6E+02 0.0035 32.0 7.0 57 142-198 107-167 (764)
332 cd03418 GRX_GRXb_1_3_like Glut 29.2 2.1E+02 0.0046 20.2 7.6 53 157-209 2-56 (75)
333 PF07517 SecA_DEAD: SecA DEAD- 28.4 4.2E+02 0.0091 24.9 9.0 66 133-198 97-166 (266)
334 COG0610 Type I site-specific r 27.9 3.9E+02 0.0086 30.2 10.1 65 194-259 581-651 (962)
335 PRK13107 preprotein translocas 27.8 1.8E+02 0.0039 32.3 7.1 71 143-220 112-186 (908)
336 PRK06646 DNA polymerase III su 27.4 3.6E+02 0.0079 23.0 7.7 80 139-231 12-93 (154)
337 PF09419 PGP_phosphatase: Mito 27.4 3.3E+02 0.0073 23.7 7.6 59 141-203 64-130 (168)
338 TIGR03117 cas_csf4 CRISPR-asso 27.0 31 0.00067 36.7 1.2 19 25-43 203-221 (636)
339 PLN02723 3-mercaptopyruvate su 26.8 1.3E+02 0.0028 29.0 5.5 38 153-190 268-306 (320)
340 PRK07764 DNA polymerase III su 26.7 1.5E+02 0.0032 32.9 6.3 24 91-115 138-161 (824)
341 TIGR02621 cas3_GSU0051 CRISPR- 26.7 1.1E+02 0.0023 33.9 5.2 54 155-212 62-143 (844)
342 KOG0337|consensus 26.5 1.3E+02 0.0029 30.3 5.3 70 154-227 90-169 (529)
343 cd01423 MGS_CPS_I_III Methylgl 26.4 64 0.0014 25.8 2.8 42 172-213 37-80 (116)
344 PF12761 End3: Actin cytoskele 26.1 3.1E+02 0.0068 24.5 7.1 23 235-257 67-90 (195)
345 COG5220 TFB3 Cdk activating ki 26.1 5E+02 0.011 24.0 8.4 33 304-336 107-139 (314)
346 PRK07594 type III secretion sy 26.1 5.3E+02 0.012 26.2 9.7 11 235-245 285-295 (433)
347 KOG0390|consensus 25.9 23 0.0005 38.3 0.1 18 27-44 375-392 (776)
348 TIGR02196 GlrX_YruB Glutaredox 25.7 1.5E+02 0.0033 20.4 4.5 53 158-210 3-56 (74)
349 PHA03371 circ protein; Provisi 25.7 57 0.0012 29.7 2.5 38 213-250 29-80 (240)
350 cd03028 GRX_PICOT_like Glutare 25.5 3E+02 0.0064 20.8 7.5 45 154-198 7-57 (90)
351 PRK05986 cob(I)alamin adenolsy 25.3 81 0.0018 28.1 3.4 32 91-122 136-167 (191)
352 PRK11747 dinG ATP-dependent DN 24.8 35 0.00075 36.9 1.2 15 29-43 247-261 (697)
353 KOG2680|consensus 24.7 82 0.0018 30.4 3.4 70 30-100 290-370 (454)
354 PRK12906 secA preprotein trans 24.6 2.1E+02 0.0046 31.4 6.9 75 140-221 107-185 (796)
355 PF05621 TniB: Bacterial TniB 24.5 25 0.00054 33.7 -0.0 22 28-49 145-166 (302)
356 PRK09189 uroporphyrinogen-III 24.5 2.2E+02 0.0047 25.9 6.3 72 153-244 117-191 (240)
357 COG0353 RecR Recombinational D 24.4 2.1E+02 0.0045 25.7 5.7 63 154-217 78-149 (198)
358 PF01488 Shikimate_DH: Shikima 24.4 3.8E+02 0.0082 22.0 7.2 76 151-237 33-116 (135)
359 cd01446 DSP_MapKP N-terminal r 24.1 1.5E+02 0.0033 24.0 4.7 38 153-190 74-123 (132)
360 PRK07413 hypothetical protein; 24.0 3E+02 0.0064 27.5 7.3 32 91-122 146-177 (382)
361 PRK14738 gmk guanylate kinase; 24.0 4.6E+02 0.01 23.2 8.2 63 181-243 81-143 (206)
362 TIGR03167 tRNA_sel_U_synt tRNA 23.9 2E+02 0.0043 27.7 6.1 37 155-191 75-112 (311)
363 PRK09280 F0F1 ATP synthase sub 23.8 6.1E+02 0.013 26.0 9.7 11 235-245 278-288 (463)
364 COG0156 BioF 7-keto-8-aminopel 23.3 90 0.0019 31.2 3.6 15 30-44 202-216 (388)
365 PF02602 HEM4: Uroporphyrinoge 23.3 1.4E+02 0.003 26.8 4.7 83 143-246 106-191 (231)
366 cd01422 MGS Methylglyoxal synt 23.0 1.2E+02 0.0027 24.4 3.8 41 172-213 38-79 (115)
367 PRK05597 molybdopterin biosynt 22.9 1.2E+02 0.0025 29.9 4.3 38 153-190 313-351 (355)
368 PRK07414 cob(I)yrinic acid a,c 22.8 1.1E+02 0.0023 27.1 3.6 32 91-122 136-167 (178)
369 KOG0336|consensus 22.4 2.9E+02 0.0062 27.9 6.7 55 154-212 294-351 (629)
370 PF13401 AAA_22: AAA domain; P 22.3 38 0.00081 27.2 0.7 13 29-41 88-100 (131)
371 PRK04296 thymidine kinase; Pro 22.2 92 0.002 27.4 3.2 22 92-113 94-115 (190)
372 cd01133 F1-ATPase_beta F1 ATP 22.1 6.8E+02 0.015 23.7 10.1 64 141-204 113-188 (274)
373 KOG0352|consensus 22.1 1.5E+02 0.0032 30.1 4.7 59 154-212 61-121 (641)
374 PRK13958 N-(5'-phosphoribosyl) 21.9 3.8E+02 0.0081 24.1 7.1 37 155-193 54-90 (207)
375 KOG0333|consensus 21.9 60 0.0013 33.6 2.1 70 29-102 351-426 (673)
376 cd01443 Cdc25_Acr2p Cdc25 enzy 21.8 2.9E+02 0.0062 21.7 5.8 36 154-189 66-109 (113)
377 PRK06936 type III secretion sy 21.7 6.6E+02 0.014 25.6 9.4 82 130-212 164-259 (439)
378 PRK08074 bifunctional ATP-depe 21.6 43 0.00093 37.5 1.1 19 25-43 452-470 (928)
379 PF01113 DapB_N: Dihydrodipico 21.4 3.9E+02 0.0084 21.6 6.6 55 156-212 69-123 (124)
380 PRK03692 putative UDP-N-acetyl 21.1 5.8E+02 0.013 23.6 8.3 67 143-209 92-162 (243)
381 PF00697 PRAI: N-(5'phosphorib 21.0 3.6E+02 0.0079 23.8 6.8 50 141-192 36-85 (197)
382 PRK05642 DNA replication initi 20.8 1.1E+02 0.0023 28.0 3.5 26 91-116 117-142 (234)
383 PRK15327 type III secretion sy 20.6 8.2E+02 0.018 24.5 9.6 64 137-203 167-241 (393)
384 PRK09860 putative alcohol dehy 20.2 5.6E+02 0.012 25.3 8.6 70 141-210 18-94 (383)
385 KOG0387|consensus 20.1 1.5E+02 0.0033 32.3 4.6 20 155-174 457-476 (923)
No 1
>KOG0338|consensus
Probab=100.00 E-value=2.2e-58 Score=442.49 Aligned_cols=307 Identities=47% Similarity=0.726 Sum_probs=280.5
Q ss_pred CCCceEEeCCcccccccccCCCcccccccc--eeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----h
Q psy3145 46 YPQTAIVPNLPRLKFSSEYQPKKFKTKKIT--DFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----F 118 (396)
Q Consensus 46 ~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id--~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~ 118 (396)
+...+||+.||+-+..+..+..+|+...+. ++|++++||.. +|.+++.+|++.||+++|++||||||+..+ .
T Consensus 300 Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~lcpk~RQTmLFSATMteeVkdL~sl 378 (691)
T KOG0338|consen 300 RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASL 378 (691)
T ss_pred hhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHh
Confidence 334444555554444444455555544444 55888888765 999999999999999999999999999999 7
Q ss_pred ccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeC
Q psy3145 119 LLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHG 186 (396)
Q Consensus 119 ~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg 186 (396)
+|++|++|.+ +|+++++..+..+..+|..++.+.+..++|||+.|++.|+++.-+|...|++++.+||
T Consensus 379 SL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHG 458 (691)
T KOG0338|consen 379 SLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHG 458 (691)
T ss_pred hcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcc
Confidence 8999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHH
Q psy3145 187 NLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266 (396)
Q Consensus 187 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~ 266 (396)
+++|.+|.+.+++|++++++||||||+++||+||++|.+||||++|.+...|+||+||++|+|+.|.+++|+++.|++++
T Consensus 459 sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 459 SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---cCCCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhh
Q psy3145 267 KQVIKN---AKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKM 343 (396)
Q Consensus 267 ~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~a~~~ 343 (396)
+.+.++ .+.+++.+.+|+ +.+.+|..++++++..+..++.++..++++.++++++.+++|+
T Consensus 539 K~iik~~~~a~~klk~R~i~~----------------~~Iek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~ 602 (691)
T KOG0338|consen 539 KEIIKSSTKAGSKLKNRNIPP----------------EVIEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENM 602 (691)
T ss_pred HHHHhhhhhcccchhhcCCCH----------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999998 677788888888 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCCcccccccHHHHHHHH
Q psy3145 344 LKEKKPLHENPPREWFQTKKERAAIK 369 (396)
Q Consensus 344 l~~~~~i~~~~~~~w~~~~~~~~~~~ 369 (396)
|++++++..+|+|+||+++++|+.++
T Consensus 603 Le~g~ei~arprRtWFqte~~kk~~K 628 (691)
T KOG0338|consen 603 LEHGDEIYARPRRTWFQTEKDKKASK 628 (691)
T ss_pred HhhccccccCccchhhhhhHHHHHHH
Confidence 99999999999999999999998874
No 2
>KOG0330|consensus
Probab=100.00 E-value=3.3e-43 Score=328.91 Aligned_cols=209 Identities=31% Similarity=0.458 Sum_probs=190.8
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
.++..++++|+||||+++++.| .+.+..|++.+|..
T Consensus 200 f~le~lk~LVlDEADrlLd~dF--------------------------------------------~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 200 FSLEQLKFLVLDEADRLLDMDF--------------------------------------------EEELDYILKVIPRE 235 (476)
T ss_pred ccHHHhHHHhhchHHhhhhhhh--------------------------------------------HHHHHHHHHhcCcc
Confidence 3567788999999998888754 45568999999999
Q ss_pred CcEEEEeecCChhh-----hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 104 KGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
+|++|||||||..+ ..+.+|+.+.+ .|.+++ ..+|...|..+++...+.++||||+|...
T Consensus 236 rqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~---~k~K~~yLV~ll~e~~g~s~iVF~~t~~t 312 (476)
T KOG0330|consen 236 RQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP---GKDKDTYLVYLLNELAGNSVIVFCNTCNT 312 (476)
T ss_pred ceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecc---ccccchhHHHHHHhhcCCcEEEEEeccch
Confidence 99999999999999 67889998887 344443 34788999999998889999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcc
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
++.++-.|+..|+.+..+||.|++..|..++++|++|..+||||||+++||+|+|.|++|||||+|.+..+|+||+||+|
T Consensus 313 t~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 313 TRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred HHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEcCccHHHHHHHHHHcCCCCcc
Q psy3145 247 RAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 247 R~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~ 279 (396)
|+|++|.+++|++..|...+.+|+...+.....
T Consensus 393 RaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 393 RAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred ccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999876543
No 3
>KOG0328|consensus
Probab=100.00 E-value=1.4e-41 Score=306.13 Aligned_cols=228 Identities=21% Similarity=0.325 Sum_probs=201.6
Q ss_pred CceEEeCCcccc----cccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----h
Q psy3145 48 QTAIVPNLPRLK----FSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----F 118 (396)
Q Consensus 48 ~~~Iv~t~~~l~----~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~ 118 (396)
+..++.++|+.+ .....+.+.++.+++|+.|+ |+.. +|.+|+..|++.+|++.|++++|||+|..+ .
T Consensus 145 G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe---mL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k 220 (400)
T KOG0328|consen 145 GQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE---MLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK 220 (400)
T ss_pred cceEeeCCCchHHHHHHhccccccceeEEEeccHHH---HHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH
Confidence 344565555433 44455667777777777666 3333 899999999999999999999999999999 8
Q ss_pred ccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCC
Q psy3145 119 LLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188 (396)
Q Consensus 119 ~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~ 188 (396)
++.+|+.+-+ ..+++....+.+|++.|+.+.....-.+++|||||++.++++.+.+++..+.+..+||+|
T Consensus 221 fmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm 300 (400)
T KOG0328|consen 221 FMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDM 300 (400)
T ss_pred hcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCc
Confidence 8999999887 334455566788999999999888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHH
Q psy3145 189 TQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQ 268 (396)
Q Consensus 189 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~ 268 (396)
++++|.+++..|++|+.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|.++.|+...|...++.
T Consensus 301 ~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 301 EQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRD 380 (400)
T ss_pred chhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcc
Q psy3145 269 VIKNAKNPVKH 279 (396)
Q Consensus 269 i~~~~~~~~~~ 279 (396)
+++.++..+.+
T Consensus 381 ieq~yst~i~e 391 (400)
T KOG0328|consen 381 IEQYYSTQIDE 391 (400)
T ss_pred HHHHHhhhccc
Confidence 99998876554
No 4
>KOG0331|consensus
Probab=100.00 E-value=5.3e-41 Score=332.00 Aligned_cols=210 Identities=30% Similarity=0.421 Sum_probs=181.4
Q ss_pred ccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH
Q psy3145 20 DDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA 99 (396)
Q Consensus 20 ~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~ 99 (396)
+...-.+.++.++|+||||+|+++||.|++ ..|+..
T Consensus 231 e~g~~~l~~v~ylVLDEADrMldmGFe~qI--------------------------------------------~~Il~~ 266 (519)
T KOG0331|consen 231 EEGSLNLSRVTYLVLDEADRMLDMGFEPQI--------------------------------------------RKILSQ 266 (519)
T ss_pred HcCCccccceeEEEeccHHhhhccccHHHH--------------------------------------------HHHHHh
Confidence 344556778889999999988888776555 899999
Q ss_pred C-CCCCcEEEEeecCChhh-----hccCCCeEEEEEEE-----------EEecCChhhHHHHHHHHHhhc---CCCcEEE
Q psy3145 100 Y-CWSKGTFQSNASMTSFL-----FLLRPPVLLCLLCF-----------RIRKDTHLDRKALLAALVCRT---FKDHTMI 159 (396)
Q Consensus 100 ~-~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~~~~-----------~~~~~~~~~k~~~l~~ll~~~---~~~~~iI 159 (396)
+ ++.+|++++|||+|.++ .++.+|..+.+-.. .+...++..|...|..++... .++|+||
T Consensus 267 i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvII 346 (519)
T KOG0331|consen 267 IPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVII 346 (519)
T ss_pred cCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 9 66779999999999999 78889998887111 111123556777777777554 4679999
Q ss_pred EeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHH
Q psy3145 160 FVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239 (396)
Q Consensus 160 F~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~ 239 (396)
||+|++.|++++..|+..++++..+||+.+|.+|..+++.|++|+..||||||+++||+|+|+|++|||||+|.++++|+
T Consensus 347 Fc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYV 426 (519)
T KOG0331|consen 347 FCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYV 426 (519)
T ss_pred EecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 240 HRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 240 qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
||+|||||+|+.|.+++|++..+......+.+.+
T Consensus 427 HRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 427 HRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred hhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777776655
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-40 Score=336.62 Aligned_cols=191 Identities=36% Similarity=0.494 Sum_probs=170.9
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHh
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVC 150 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~ 150 (396)
||.+++..|+..+|.++|+++||||+|+.+ .++++|..+.+ ..+.+.......|..+|..++.
T Consensus 190 Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~ 269 (513)
T COG0513 190 GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLK 269 (513)
T ss_pred CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 445666999999999999999999999977 78889987766 2222222223359999999998
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec
Q psy3145 151 RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230 (396)
Q Consensus 151 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~ 230 (396)
.....++||||+|+..|+.++..|...|+++..+||+|+|.+|.++++.|++|+.+||||||+++||||||++++|||||
T Consensus 270 ~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD 349 (513)
T COG0513 270 DEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYD 349 (513)
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEcc
Confidence 88778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhhcccCCCCceEEEEEcCc-cHHHHHHHHHHcCCCCc
Q psy3145 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DRKLVKQVIKNAKNPVK 278 (396)
Q Consensus 231 ~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~-e~~~~~~i~~~~~~~~~ 278 (396)
+|.+++.|+||+|||||+|+.|.+++|+++. |...+..+++.....+.
T Consensus 350 ~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 350 LPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999986 89999999998765544
No 6
>KOG0333|consensus
Probab=100.00 E-value=2.7e-39 Score=312.20 Aligned_cols=229 Identities=29% Similarity=0.430 Sum_probs=185.3
Q ss_pred hcccceeEEEeccccccccCCCCCCce-EEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTA-IVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
-.+.+..++|+|||+++.++||.|++. |+.-.|..-... .-|+..+ ...+..++.....
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~-------------~tde~~~-------~~~~~~~~~~~k~ 451 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKP-------------DTDEKEG-------EERVRKNFSSSKK 451 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCC-------------Cccchhh-------HHHHHhhcccccc
Confidence 345677899999999999999999984 332222211110 0012111 1233444444445
Q ss_pred CCcEEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 103 SKGTFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
-+|+++||||||+.+ .+|++|+.+.+ +.+... ....|...|..++...+..++|||+|+++.
T Consensus 452 yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~--~ed~k~kkL~eil~~~~~ppiIIFvN~kk~ 529 (673)
T KOG0333|consen 452 YRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMV--SEDEKRKKLIEILESNFDPPIIIFVNTKKG 529 (673)
T ss_pred eeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEe--cchHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 699999999999999 78999999887 222222 234567888888988888999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcc
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
|+.+++.|.+.|+++..|||+-++++|..+++.|+.|..+||||||+++||||||+|++|||||++.|..+|.||+||||
T Consensus 530 ~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 530 ADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred HHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 247 RAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 247 R~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
|+|+.|.+++|+++.|...+..+...+.
T Consensus 610 RAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 610 RAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred ccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999665555544443
No 7
>KOG0340|consensus
Probab=100.00 E-value=9.3e-37 Score=282.65 Aligned_cols=216 Identities=28% Similarity=0.355 Sum_probs=185.7
Q ss_pred ccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH
Q psy3145 20 DDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA 99 (396)
Q Consensus 20 ~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~ 99 (396)
.+....++++.++|+||||++++..| .+.+..|...
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~~~f--------------------------------------------~d~L~~i~e~ 180 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLAGCF--------------------------------------------PDILEGIEEC 180 (442)
T ss_pred ccchhhhhceeeEEecchhhhhccch--------------------------------------------hhHHhhhhcc
Confidence 45677788999999999999888643 3556788899
Q ss_pred CCCCCcEEEEeecCChhhhc-cCCCeE------EEE------------EEEEEecCChhhHHHHHHHHHhhcC---CCcE
Q psy3145 100 YCWSKGTFQSNASMTSFLFL-LRPPVL------LCL------------LCFRIRKDTHLDRKALLAALVCRTF---KDHT 157 (396)
Q Consensus 100 ~~~~~q~ll~SAT~~~~~~~-l~~p~~------i~~------------~~~~~~~~~~~~k~~~l~~ll~~~~---~~~~ 157 (396)
+|+.+|+++||||+++.+.. ..-|.. +.+ .|+.+ ....|..+|..++.... ++.+
T Consensus 181 lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~---~~~vkdaYLv~~Lr~~~~~~~~si 257 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILV---SIDVKDAYLVHLLRDFENKENGSI 257 (442)
T ss_pred CCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeec---chhhhHHHHHHHHhhhhhccCceE
Confidence 99999999999999999922 222222 221 34433 33467788888875443 5789
Q ss_pred EEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhH
Q psy3145 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEH 237 (396)
Q Consensus 158 iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~ 237 (396)
+||+|+...|+.++..|+..++++..+||.|+|.+|...+.+|+++.+++|||||+++||+|||.|++|||||+|.+|..
T Consensus 258 mIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~ 337 (442)
T KOG0340|consen 258 MIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKD 337 (442)
T ss_pred EEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccC
Q psy3145 238 YIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRII 282 (396)
Q Consensus 238 y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~ 282 (396)
|+||+||++|+|+.|.+++++++.|.+.+..|++..+.++.+...
T Consensus 338 yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 338 YIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred HHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999887765443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.7e-37 Score=309.67 Aligned_cols=214 Identities=28% Similarity=0.383 Sum_probs=187.2
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||+++++|| ...+..++..+|..+
T Consensus 144 ~l~~l~~lViDEad~~l~~g~--------------------------------------------~~~l~~i~~~~~~~~ 179 (460)
T PRK11776 144 DLDALNTLVLDEADRMLDMGF--------------------------------------------QDAIDAIIRQAPARR 179 (460)
T ss_pred cHHHCCEEEEECHHHHhCcCc--------------------------------------------HHHHHHHHHhCCccc
Confidence 466788899999998877664 345588999999999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE---------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL---------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~---------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
|+++||||+|+.+ .++.+|..+.+ ....+.. ....|...+..++....+.++||||+|+..++.+
T Consensus 180 q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 180 QTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV-SPDERLPALQRLLLHHQPESCVVFCNTKKECQEV 258 (460)
T ss_pred EEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe-CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHH
Confidence 9999999999987 55778887765 1222222 2335888899988877788999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
++.|...|+.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++|||||+|.++..|+||+|||||+|+
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
.|.+++|+.+.|...++.+++..+..+....+|
T Consensus 339 ~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 339 KGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred cceEEEEEchhHHHHHHHHHHHhCCCCceecCC
Confidence 999999999999999999999888777655554
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.9e-36 Score=311.22 Aligned_cols=214 Identities=28% Similarity=0.401 Sum_probs=185.8
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++||||||.++++|| .+.+..|+..+|..+|
T Consensus 147 l~~l~~lVlDEAd~ml~~gf--------------------------------------------~~di~~Il~~lp~~~q 182 (629)
T PRK11634 147 LSKLSGLVLDEADEMLRMGF--------------------------------------------IEDVETIMAQIPEGHQ 182 (629)
T ss_pred hhhceEEEeccHHHHhhccc--------------------------------------------HHHHHHHHHhCCCCCe
Confidence 56678888888887777654 4556888999999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
+++||||+|+.+ .++.+|..+.+ ...++.. ....|...|..++......++||||+|+..++.+
T Consensus 183 ~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v-~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV-WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEe-chhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 999999999988 57788877755 1111111 2346778888888776678999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
+..|...|+.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.++.+|+||+|||||+|+
T Consensus 262 ~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 262 AEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred HHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHHHHcCCCCccccCCC
Q psy3145 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP 284 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~ 284 (396)
.|.+++|+.+.+...++.+++.++..+....+|.
T Consensus 342 ~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred cceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999888776655544
No 10
>KOG0326|consensus
Probab=100.00 E-value=3.9e-37 Score=281.50 Aligned_cols=228 Identities=19% Similarity=0.287 Sum_probs=198.3
Q ss_pred Cce-EEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccC
Q psy3145 48 QTA-IVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLR 121 (396)
Q Consensus 48 ~~~-Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~ 121 (396)
.+. ++.||++++-...-.-..++...+.++||++.++ +.+|.+-+..++..+|+++|+++||||+|-.+ .+|+
T Consensus 203 ~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlL-s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~ 281 (459)
T KOG0326|consen 203 TVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLL-SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLK 281 (459)
T ss_pred ceEEEEcCChhHHHHHhcccccchhceEEEechhhhhh-chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhcc
Confidence 445 4455555543222233445555556666666554 56999999999999999999999999999999 7899
Q ss_pred CCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHH
Q psy3145 122 PPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP 191 (396)
Q Consensus 122 ~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 191 (396)
+|..|.. +|+... .+..|..-|..++.+..-.+.||||||...++.+|+.+.+.|+.|.++|+.|.|+
T Consensus 282 kPy~INLM~eLtl~GvtQyYafV--~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~ 359 (459)
T KOG0326|consen 282 KPYEINLMEELTLKGVTQYYAFV--EERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQE 359 (459)
T ss_pred Ccceeehhhhhhhcchhhheeee--chhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHh
Confidence 9999887 343332 3568999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHH
Q psy3145 192 SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271 (396)
Q Consensus 192 ~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~ 271 (396)
.|..++..|++|.++.|||||.+.||||++.+++|||||+|.+.++|+||+||+||.|..|.++.+++-+|+..+..++.
T Consensus 360 hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 360 HRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred hhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCc
Q psy3145 272 NAKNPVK 278 (396)
Q Consensus 272 ~~~~~~~ 278 (396)
.++..++
T Consensus 440 eLGtEI~ 446 (459)
T KOG0326|consen 440 ELGTEIK 446 (459)
T ss_pred Hhccccc
Confidence 9998776
No 11
>KOG0342|consensus
Probab=100.00 E-value=1.8e-36 Score=291.30 Aligned_cols=201 Identities=28% Similarity=0.388 Sum_probs=176.6
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
...+.+.++|+||||+++++|| ++++..|+..+|..
T Consensus 226 f~~r~~k~lvlDEADrlLd~GF--------------------------------------------~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 226 FLFRNLKCLVLDEADRLLDIGF--------------------------------------------EEDVEQIIKILPKQ 261 (543)
T ss_pred chhhccceeEeecchhhhhccc--------------------------------------------HHHHHHHHHhcccc
Confidence 3444567888888888888765 45568999999999
Q ss_pred CcEEEEeecCChhh------hccCCCeEEEE-------------EEEEEecCChhhHHHHHHHHHhhcCC-CcEEEEeCC
Q psy3145 104 KGTFQSNASMTSFL------FLLRPPVLLCL-------------LCFRIRKDTHLDRKALLAALVCRTFK-DHTMIFVPT 163 (396)
Q Consensus 104 ~q~ll~SAT~~~~~------~~l~~p~~i~~-------------~~~~~~~~~~~~k~~~l~~ll~~~~~-~~~iIF~~t 163 (396)
+|+++||||+|+.+ ...++|+++.+ +-+.+.+ ...++.++..+++++.+ .++||||+|
T Consensus 262 rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~--~~~~f~ll~~~LKk~~~~~KiiVF~sT 339 (543)
T KOG0342|consen 262 RQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP--SDSRFSLLYTFLKKNIKRYKIIVFFST 339 (543)
T ss_pred ceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc--ccchHHHHHHHHHHhcCCceEEEEech
Confidence 99999999999999 23346888887 2122222 23457888888877765 899999999
Q ss_pred hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHh
Q psy3145 164 KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 164 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~G 243 (396)
...+..+++.|+...++|..+||+++|..|..+...|++.+..||||||+++||+|+|+|+.||+||.|.++.+|+||+|
T Consensus 340 ~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvG 419 (543)
T KOG0342|consen 340 CMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVG 419 (543)
T ss_pred hhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEEcCccHHHHHHHH
Q psy3145 244 RTARAGKGGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~~~~~~i~ 270 (396)
||||.|..|.+++++.+.|..+++++.
T Consensus 420 RTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 420 RTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999887
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-36 Score=303.21 Aligned_cols=209 Identities=28% Similarity=0.384 Sum_probs=180.0
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC--
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW-- 102 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~-- 102 (396)
.+.+++++||||||++.++||. .++..++..+|.
T Consensus 154 ~l~~v~~lViDEad~l~~~~f~--------------------------------------------~~i~~i~~~~~~~~ 189 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLGFI--------------------------------------------KDIRWLFRRMPPAN 189 (423)
T ss_pred ccccccEEEEecHHHHhhcccH--------------------------------------------HHHHHHHHhCCCcc
Confidence 4667889999999988777653 445677888874
Q ss_pred CCcEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHH
Q psy3145 103 SKGTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREA 167 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~ 167 (396)
.+|+++||||++..+ ..+.+|..+.+ ..... ......|...|..++......++||||+|+..|
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-YPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRC 268 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-eCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 577899999999887 56778877765 11111 123456888888888777778999999999999
Q ss_pred HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhccc
Q psy3145 168 HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 168 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR 247 (396)
+.++..|...|+++..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++..|+||+||+||
T Consensus 269 ~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR 348 (423)
T PRK04837 269 EEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348 (423)
T ss_pred HHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEcCccHHHHHHHHHHcCCCCc
Q psy3145 248 AGKGGVSVSMAGEVDRKLVKQVIKNAKNPVK 278 (396)
Q Consensus 248 ~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~ 278 (396)
.|+.|.+++|+++.+...+..+++.++..+.
T Consensus 349 ~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 349 AGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred CCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999889999887765543
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.4e-36 Score=303.22 Aligned_cols=210 Identities=27% Similarity=0.433 Sum_probs=183.4
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.++++|||||||++++++|. ..+..++..++..+
T Consensus 146 ~l~~v~~lViDEah~ll~~~~~--------------------------------------------~~i~~il~~l~~~~ 181 (456)
T PRK10590 146 KLDQVEILVLDEADRMLDMGFI--------------------------------------------HDIRRVLAKLPAKR 181 (456)
T ss_pred ccccceEEEeecHHHHhccccH--------------------------------------------HHHHHHHHhCCccC
Confidence 4678999999999988887653 44577888899999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAH 168 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~ 168 (396)
|+++||||+++.+ ..+.+|..+.+ .++. ......+..++..++......++||||+|+..++
T Consensus 182 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~ 259 (456)
T PRK10590 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH--FVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGAN 259 (456)
T ss_pred eEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE--EcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHH
Confidence 9999999999976 56677876654 1221 1234467778888887777789999999999999
Q ss_pred HHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 169 EMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 169 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|.++.+|+||+|||||.
T Consensus 260 ~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~ 339 (456)
T PRK10590 260 HLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339 (456)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCccHHHHHHHHHHcCCCCccc
Q psy3145 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 249 g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~ 280 (396)
|..|.+++|+...|...++.+++.++..+...
T Consensus 340 g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 340 AATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred CCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999887666433
No 14
>KOG0336|consensus
Probab=100.00 E-value=1.4e-36 Score=285.65 Aligned_cols=212 Identities=29% Similarity=0.464 Sum_probs=186.2
Q ss_pred CCCCccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHH
Q psy3145 16 PNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTE 95 (396)
Q Consensus 16 ~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~ 95 (396)
...+.+..-.+..+.+||+||||+++++||.|++ ..
T Consensus 355 ndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqI--------------------------------------------rk 390 (629)
T KOG0336|consen 355 NDLQMDNVINLASITYLVLDEADRMLDMGFEPQI--------------------------------------------RK 390 (629)
T ss_pred hhhhhcCeeeeeeeEEEEecchhhhhcccccHHH--------------------------------------------HH
Confidence 3344455567778899999999999999887776 67
Q ss_pred HHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHhhcC-CCcE
Q psy3145 96 IVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRTF-KDHT 157 (396)
Q Consensus 96 il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~ 157 (396)
|+-...+++|+++.|||.|+.+ .++++|..+-+ +++.+ ..+..|..++..++.... ..++
T Consensus 391 illdiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v--~~d~~k~~~~~~f~~~ms~ndKv 468 (629)
T KOG0336|consen 391 ILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIV--TTDSEKLEIVQFFVANMSSNDKV 468 (629)
T ss_pred HhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEe--cccHHHHHHHHHHHHhcCCCceE
Confidence 7777889999999999999999 78999987766 33322 345678888888876554 6799
Q ss_pred EEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhH
Q psy3145 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEH 237 (396)
Q Consensus 158 iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~ 237 (396)
||||..+..|+.|..-|...|+.+..+||+-.|.+|+..++.|++|+++||||||+++||+|+|++.||+|||+|.+.+.
T Consensus 469 IiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIee 548 (629)
T KOG0336|consen 469 IIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEE 548 (629)
T ss_pred EEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 238 YIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 238 y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
|+||+||+||+|+.|.+++|++..|.....++.+-+
T Consensus 549 YVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 549 YVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred HHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 999999999999999999999999998888776543
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-35 Score=297.85 Aligned_cols=216 Identities=31% Similarity=0.504 Sum_probs=186.0
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.++++++||+||||+++++||.+. +..+...++...
T Consensus 144 ~~~~v~~lViDEah~~l~~~~~~~--------------------------------------------~~~i~~~~~~~~ 179 (434)
T PRK11192 144 DCRAVETLILDEADRMLDMGFAQD--------------------------------------------IETIAAETRWRK 179 (434)
T ss_pred CcccCCEEEEECHHHHhCCCcHHH--------------------------------------------HHHHHHhCcccc
Confidence 357789999999999888776444 467777888899
Q ss_pred cEEEEeecCChh-h-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHH
Q psy3145 105 GTFQSNASMTSF-L-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAH 168 (396)
Q Consensus 105 q~ll~SAT~~~~-~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~ 168 (396)
|+++||||++.. + ..+.+|..+.+ ..+.........|..+|..++......++||||+|+..++
T Consensus 180 q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~ 259 (434)
T PRK11192 180 QTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVH 259 (434)
T ss_pred EEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHH
Confidence 999999999864 3 45667777655 2222333334578889999887766789999999999999
Q ss_pred HHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 169 EMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 169 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++|||||+|.+...|+||+||+||+
T Consensus 260 ~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 260 ELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCccHHHHHHHHHHcCCCCccccCCC
Q psy3145 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP 284 (396)
Q Consensus 249 g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~ 284 (396)
|..|.+++|+...|...+..+.+.+..++..+.+..
T Consensus 340 g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~~~ 375 (434)
T PRK11192 340 GRKGTAISLVEAHDHLLLGKIERYIEEPLKARVIDE 375 (434)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999988877766555443
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-35 Score=305.16 Aligned_cols=205 Identities=31% Similarity=0.424 Sum_probs=174.4
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+.++++|||||||+++++||.+ ++..|+..++++
T Consensus 273 ~~l~~v~~lViDEAd~mld~gf~~--------------------------------------------~i~~il~~~~~~ 308 (545)
T PTZ00110 273 TNLRRVTYLVLDEADRMLDMGFEP--------------------------------------------QIRKIVSQIRPD 308 (545)
T ss_pred CChhhCcEEEeehHHhhhhcchHH--------------------------------------------HHHHHHHhCCCC
Confidence 446788999999999888876544 447888889999
Q ss_pred CcEEEEeecCChhh-----hcc-CCCeEEEE------------EEEEEecCChhhHHHHHHHHHhhc--CCCcEEEEeCC
Q psy3145 104 KGTFQSNASMTSFL-----FLL-RPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRT--FKDHTMIFVPT 163 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l-~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~t 163 (396)
+|+++||||+|..+ ..+ .+|+.+.+ ..+.+. ....|...|..++... ...++||||+|
T Consensus 309 ~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~--~~~~k~~~L~~ll~~~~~~~~k~LIF~~t 386 (545)
T PTZ00110 309 RQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVV--EEHEKRGKLKMLLQRIMRDGDKILIFVET 386 (545)
T ss_pred CeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEE--echhHHHHHHHHHHHhcccCCeEEEEecC
Confidence 99999999999987 233 35665544 112221 2345667777777554 46799999999
Q ss_pred hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHh
Q psy3145 164 KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 164 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~G 243 (396)
++.|+.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.+..+|+||+|
T Consensus 387 ~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG 466 (545)
T PTZ00110 387 KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIG 466 (545)
T ss_pred hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
||||+|+.|.+++|+++.+....+.+.+.+.
T Consensus 467 RtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 467 RTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred ccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 9999999999999999999888887776654
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-35 Score=304.10 Aligned_cols=212 Identities=29% Similarity=0.400 Sum_probs=181.1
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC--C
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW--S 103 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~--~ 103 (396)
+..+++|||||||++.++||. ..+..|++.+|. .
T Consensus 157 l~~v~~lViDEAh~lld~gf~--------------------------------------------~~i~~il~~lp~~~~ 192 (572)
T PRK04537 157 LHACEICVLDEADRMFDLGFI--------------------------------------------KDIRFLLRRMPERGT 192 (572)
T ss_pred hhheeeeEecCHHHHhhcchH--------------------------------------------HHHHHHHHhcccccC
Confidence 556788999999988776653 445778888886 7
Q ss_pred CcEEEEeecCChhh-----hccCCCeEEEE---------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHH
Q psy3145 104 KGTFQSNASMTSFL-----FLLRPPVLLCL---------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHE 169 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~~p~~i~~---------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~ 169 (396)
+|+++||||++..+ ..+.+|..+.+ ....+.......|...+..++....+.++||||+|+..|+.
T Consensus 193 ~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 193 RQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVER 272 (572)
T ss_pred ceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHH
Confidence 89999999999887 55677765543 01111122345678888888877778899999999999999
Q ss_pred HHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC
Q psy3145 170 MHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249 (396)
Q Consensus 170 l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g 249 (396)
+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++..|+||+||+||.|
T Consensus 273 l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G 352 (572)
T PRK04537 273 VARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG 352 (572)
T ss_pred HHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEcCccHHHHHHHHHHcCCCCcccc
Q psy3145 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRI 281 (396)
Q Consensus 250 ~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~ 281 (396)
+.|.+++|+.+.+...++.+++.+...+....
T Consensus 353 ~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 353 EEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999998889999888776654433
No 18
>KOG0345|consensus
Probab=100.00 E-value=9.5e-36 Score=284.64 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=178.6
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
++.+.+||+||||+++++|| ...+..|++.+|+++.
T Consensus 155 ~rsLe~LVLDEADrLldmgF--------------------------------------------e~~~n~ILs~LPKQRR 190 (567)
T KOG0345|consen 155 FRSLEILVLDEADRLLDMGF--------------------------------------------EASVNTILSFLPKQRR 190 (567)
T ss_pred ccccceEEecchHhHhcccH--------------------------------------------HHHHHHHHHhcccccc
Confidence 67889999999999998875 4555899999999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE--------------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL--------------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~--------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
|-|||||.++.+ ..|+||+.|.+ .|..+ ....|...+.+++......++|||++|...
T Consensus 191 TGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~---~a~eK~~~lv~~L~~~~~kK~iVFF~TCas 267 (567)
T KOG0345|consen 191 TGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC---EADEKLSQLVHLLNNNKDKKCIVFFPTCAS 267 (567)
T ss_pred cccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe---cHHHHHHHHHHHHhccccccEEEEecCcch
Confidence 999999999999 78999999988 23333 346799999999988888999999999999
Q ss_pred HHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhh
Q psy3145 167 AHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGR 244 (396)
Q Consensus 167 ~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GR 244 (396)
++..+..|... +..+..+||.|++..|..++++|++....+|+|||+++||||||++++||+||.|.++..|+||+||
T Consensus 268 VeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GR 347 (567)
T KOG0345|consen 268 VEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGR 347 (567)
T ss_pred HHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcch
Confidence 99999988765 6788999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEEcCccHHHHHHHHHH
Q psy3145 245 TARAGKGGVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 245 agR~g~~g~~i~l~~~~e~~~~~~i~~~ 272 (396)
|||.|+.|.+++|+.+.+..++..+.-.
T Consensus 348 TaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 348 TARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred hhhccCccceEEEecccHHHHHHHHHhc
Confidence 9999999999999999777766554333
No 19
>KOG0332|consensus
Probab=100.00 E-value=7.2e-35 Score=271.61 Aligned_cols=231 Identities=22% Similarity=0.320 Sum_probs=196.4
Q ss_pred eEEeCCccccccccc--CCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCC
Q psy3145 50 AIVPNLPRLKFSSEY--QPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRP 122 (396)
Q Consensus 50 ~Iv~t~~~l~~~~~~--~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~ 122 (396)
.|+.++|+.+..+.. ..-.+..+.+-++|+++.|+...||.++-..|.+.+|++.|.++||||+...+ ..+++
T Consensus 209 qIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn 288 (477)
T KOG0332|consen 209 QIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPN 288 (477)
T ss_pred heeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCC
Confidence 377788876644432 23334455555678888899999999999999999999999999999999998 66777
Q ss_pred CeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHH
Q psy3145 123 PVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192 (396)
Q Consensus 123 p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 192 (396)
|..+.+ ..+++....+.+|...|..++.-..-++.||||.|++.|.+++..|...|..|..+||+|.-.+
T Consensus 289 ~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~ 368 (477)
T KOG0332|consen 289 ANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQ 368 (477)
T ss_pred CceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHH
Confidence 776665 2233334456789999999887777789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC------CChhHHHHHHhhcccCCCCceEEEEEcC-ccHHH
Q psy3145 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP------HSLEHYIHRVGRTARAGKGGVSVSMAGE-VDRKL 265 (396)
Q Consensus 193 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~i~l~~~-~e~~~ 265 (396)
|..+++.|+.|..+|||+|++.+||||++.|++|||||+| .+++.|+||+|||||.|+.|.++.|+.. .+...
T Consensus 369 R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~ 448 (477)
T KOG0332|consen 369 RAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNI 448 (477)
T ss_pred HHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHH
Confidence 9999999999999999999999999999999999999999 4789999999999999999999999985 45677
Q ss_pred HHHHHHHcCCCCccc
Q psy3145 266 VKQVIKNAKNPVKHR 280 (396)
Q Consensus 266 ~~~i~~~~~~~~~~~ 280 (396)
+..|.++....+...
T Consensus 449 mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 449 MNKIQKHFNMKIKRL 463 (477)
T ss_pred HHHHHHHHhhcceec
Confidence 778888877665543
No 20
>KOG0343|consensus
Probab=100.00 E-value=2.9e-34 Score=278.66 Aligned_cols=222 Identities=27% Similarity=0.384 Sum_probs=190.0
Q ss_pred EEeCCccccccc----ccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccC
Q psy3145 51 IVPNLPRLKFSS----EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLR 121 (396)
Q Consensus 51 Iv~t~~~l~~~~----~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~ 121 (396)
+|+||++++.+. .++...+..+++|+.|.+.+| ||...+..|+..+|+.+|++|||||.+..+ ..++
T Consensus 194 LVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM----GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~ 269 (758)
T KOG0343|consen 194 LVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM----GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLK 269 (758)
T ss_pred EEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH----hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcC
Confidence 456666766443 445666666776666665544 999999999999999999999999999999 6789
Q ss_pred CCeEEEE-------------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeC
Q psy3145 122 PPVLLCL-------------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHG 186 (396)
Q Consensus 122 ~p~~i~~-------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg 186 (396)
+|..|.+ +++.+.+ ..+|+.+|...+..+...+.|||+.|.+.+..+++.+... |+++..+||
T Consensus 270 dP~~vsvhe~a~~atP~~L~Q~y~~v~--l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G 347 (758)
T KOG0343|consen 270 DPVYVSVHENAVAATPSNLQQSYVIVP--LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG 347 (758)
T ss_pred CCcEEEEeccccccChhhhhheEEEEe--hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeecc
Confidence 9999988 3333332 3579999999999999999999999999999999999877 889999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCcc-HHH
Q psy3145 187 NLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD-RKL 265 (396)
Q Consensus 187 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e-~~~ 265 (396)
.|+|..|.+++.+|-....-||+|||+++||+|+|.|+.||++|+|.++.+|+||+||++|.+..|.+++++++.+ ..+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 556
Q ss_pred HHHHHHHcCCCCcc
Q psy3145 266 VKQVIKNAKNPVKH 279 (396)
Q Consensus 266 ~~~i~~~~~~~~~~ 279 (396)
+..+.+.. .++..
T Consensus 428 l~~Lq~k~-I~i~~ 440 (758)
T KOG0343|consen 428 LKKLQKKK-IPIKE 440 (758)
T ss_pred HHHHHHcC-CCHHh
Confidence 66665543 54443
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.9e-34 Score=295.73 Aligned_cols=205 Identities=25% Similarity=0.395 Sum_probs=170.5
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+.++++||+||||+++++||++.+ ..|+..++ +
T Consensus 266 ~~l~~v~~lViDEad~ml~~gf~~~i--------------------------------------------~~i~~~l~-~ 300 (518)
T PLN00206 266 IELDNVSVLVLDEVDCMLERGFRDQV--------------------------------------------MQIFQALS-Q 300 (518)
T ss_pred ccchheeEEEeecHHHHhhcchHHHH--------------------------------------------HHHHHhCC-C
Confidence 44678899999999998887765544 56777775 6
Q ss_pred CcEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcC--CCcEEEEeCChHH
Q psy3145 104 KGTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTF--KDHTMIFVPTKRE 166 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~iIF~~t~~~ 166 (396)
+|+++||||+|+.+ ..+.+|..+.+ ...... .....|...+..++.... ..++||||+|+..
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~-~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~ 379 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIW-VETKQKKQKLFDILKSKQHFKPPAVVFVSSRLG 379 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEe-ccchhHHHHHHHHHHhhcccCCCEEEEcCCchh
Confidence 89999999999987 45566666554 111111 123345566666665432 4689999999999
Q ss_pred HHHHHHHHHh-cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhc
Q psy3145 167 AHEMHILLGL-LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRT 245 (396)
Q Consensus 167 ~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRa 245 (396)
++.++..|.. .|+++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|||||+|.+..+|+||+|||
T Consensus 380 a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 380 ADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred HHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 9999999975 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 246 ARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 246 gR~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
||.|..|.+++|+++.+...+..+.+.++
T Consensus 460 GR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 460 SRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred ccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999998888888777654
No 22
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9e-34 Score=285.48 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=172.4
Q ss_pred ceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 28 GLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
.+.++|||||||+++|| |||++ .++..+...+| +.+
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y-----------------------------------------~~lg~l~~~~~-~~p 168 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDY-----------------------------------------RRLGRLRAGLP-NPP 168 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhH-----------------------------------------HHHHHHHhhCC-CCC
Confidence 58899999999999999 99999 45677777787 999
Q ss_pred EEEEeecCChhh-------hccCCCeEEEE------EEEEEecC-ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHH
Q psy3145 106 TFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKD-THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMH 171 (396)
Q Consensus 106 ~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~-~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~ 171 (396)
++++|||.++.+ ..+.+|..+.. .++.+... ....+...+.. ......++.||||.|++.++.++
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia 247 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELA 247 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHH
Confidence 999999999999 45666643333 22222221 12233333332 12444678999999999999999
Q ss_pred HHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC
Q psy3145 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251 (396)
Q Consensus 172 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 251 (396)
.+|...|+++..|||||+.++|..+.++|..++++|+|||.++|||||.|||++|||||+|.|+++|+|.+|||||+|.+
T Consensus 248 ~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 248 EWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCccHHHHHHHHHHcC
Q psy3145 252 GVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 252 g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
..|++|+++.|....+.+.+...
T Consensus 328 a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 328 AEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred ceEEEeeccccHHHHHHHHHhhc
Confidence 99999999999998888876653
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-34 Score=291.22 Aligned_cols=210 Identities=29% Similarity=0.440 Sum_probs=180.0
Q ss_pred chhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 22 SDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 22 ~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
....+.+++++||||||++.+++|. .++..|++.++
T Consensus 231 ~~~~l~~l~~lViDEah~l~~~~~~--------------------------------------------~~l~~i~~~~~ 266 (475)
T PRK01297 231 GEVHLDMVEVMVLDEADRMLDMGFI--------------------------------------------PQVRQIIRQTP 266 (475)
T ss_pred CCcccccCceEEechHHHHHhcccH--------------------------------------------HHHHHHHHhCC
Confidence 3455778899999999988776543 44577888886
Q ss_pred C--CCcEEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCC
Q psy3145 102 W--SKGTFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPT 163 (396)
Q Consensus 102 ~--~~q~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t 163 (396)
. ++|++++|||++..+ .++.+|..+.+ .++... ....|..++..++......++||||++
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~ll~~~~~~~~IVF~~s 344 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV--AGSDKYKLLYNLVTQNPWERVMVFANR 344 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe--cchhHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4 579999999999877 45667766544 222221 234577888888877777899999999
Q ss_pred hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHh
Q psy3145 164 KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 164 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~G 243 (396)
+..++.+++.|...|+.+..+||++++.+|.++++.|++|++++||||+++++|||+|++++||+|++|.|..+|+||+|
T Consensus 345 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~G 424 (475)
T PRK01297 345 KDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIG 424 (475)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEEcCccHHHHHHHHHHcCCCC
Q psy3145 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPV 277 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~ 277 (396)
|+||.|+.|.+++|+++.|...+..+++..+.++
T Consensus 425 RaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 425 RTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred ccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999888999988877654
No 24
>KOG0335|consensus
Probab=100.00 E-value=1.9e-34 Score=281.13 Aligned_cols=223 Identities=30% Similarity=0.496 Sum_probs=181.9
Q ss_pred cccccccccccCCCCCCCccchhcccceeEEEecccccccc-CCCCCCceEEeCCcccccccccCCCcccccccceeecc
Q psy3145 2 QVDLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKAN-LGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDND 80 (396)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lViDEAh~~~~-~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~ 80 (396)
|.|+|.+|+- .|.++.+...-.|+..+++|+||||++++ +||.|++
T Consensus 202 gcdIlvaTpG--rL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I------------------------------- 248 (482)
T KOG0335|consen 202 GCDILVATPG--RLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI------------------------------- 248 (482)
T ss_pred CccEEEecCc--hhhhhhhcceeehhhCcEEEecchHHhhhhccccccH-------------------------------
Confidence 4566666553 34566666777888899999999999999 8888877
Q ss_pred cCCccccccHHHHHHHHHHCC----CCCcEEEEeecCChhh-----hccCC-CeEEEE------------EEEEEecCCh
Q psy3145 81 FSFVSSIEEYNKDTEIVVAYC----WSKGTFQSNASMTSFL-----FLLRP-PVLLCL------------LCFRIRKDTH 138 (396)
Q Consensus 81 ~~~l~~~~~~~~i~~il~~~~----~~~q~ll~SAT~~~~~-----~~l~~-p~~i~~------------~~~~~~~~~~ 138 (396)
+.|+..+. .++|+++||||+|..+ .++.+ -+.+.+ .+..+ .+
T Consensus 249 -------------r~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V---~~ 312 (482)
T KOG0335|consen 249 -------------RKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV---NE 312 (482)
T ss_pred -------------HHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee---cc
Confidence 55555543 3799999999999999 33333 333333 23333 23
Q ss_pred hhHHHHHHHHHhhcC----CC-----cEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEE
Q psy3145 139 LDRKALLAALVCRTF----KD-----HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLI 209 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~----~~-----~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLv 209 (396)
.+|...|..++.... .+ +++|||.|++.|..++.+|...++++..+||..++.+|.+.++.|++|+..+||
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 355566666664332 23 899999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 210 ATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 210 aT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
||++++||+|+|+|++|||||+|.+..+|+||+|||||.|..|.++.|++..+....+.+.+-+
T Consensus 393 aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987777777666544
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.4e-34 Score=285.01 Aligned_cols=211 Identities=24% Similarity=0.375 Sum_probs=181.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++||||||++.++||+ ..+.++++.++++.
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~--------------------------------------------~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFK--------------------------------------------GQIYDVFKKLPPDV 202 (401)
T ss_pred ccccccEEEEecHHHHHhcchH--------------------------------------------HHHHHHHhhCCCCc
Confidence 4678899999999988776543 34577888899999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHE 169 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~ 169 (396)
|++++|||+|+.+ .++.+|..+.+ ..+.+.......+...+..++......++||||+|+..++.
T Consensus 203 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~ 282 (401)
T PTZ00424 203 QVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDY 282 (401)
T ss_pred EEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHH
Confidence 9999999999887 45667765543 12222223334566777777776667899999999999999
Q ss_pred HHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC
Q psy3145 170 MHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249 (396)
Q Consensus 170 l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g 249 (396)
++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|
T Consensus 283 l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 362 (401)
T PTZ00424 283 LTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFG 362 (401)
T ss_pred HHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEcCccHHHHHHHHHHcCCCCcc
Q psy3145 250 KGGVSVSMAGEVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 250 ~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~ 279 (396)
+.|.|++|+++.+...++.+++.....+..
T Consensus 363 ~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 363 RKGVAINFVTPDDIEQLKEIERHYNTQIEE 392 (401)
T ss_pred CCceEEEEEcHHHHHHHHHHHHHHCCcccc
Confidence 999999999999999999999888766554
No 26
>KOG0341|consensus
Probab=100.00 E-value=2.1e-35 Score=276.16 Aligned_cols=174 Identities=29% Similarity=0.456 Sum_probs=151.5
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEEEE-----EEE-e---cCChhhHHHHHHHHHhhcC
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCLLC-----FRI-R---KDTHLDRKALLAALVCRTF 153 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~~~-----~~~-~---~~~~~~k~~~l~~ll~~~~ 153 (396)
||.++++.|+..+...+|+++||||||..+ ..|..|+.+++-. ..+ . -.....|...|.+.+.+.
T Consensus 342 GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT- 420 (610)
T KOG0341|consen 342 GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT- 420 (610)
T ss_pred cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-
Confidence 556677999999999999999999999999 6678899888710 000 0 012345666666666544
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH 233 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~ 233 (396)
..+++|||..+..++.+.++|-..|+.+..+|||-+|++|...++.|+.|+-+||||||+++.|+|+|++.+|||||+|.
T Consensus 421 ~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~ 500 (610)
T KOG0341|consen 421 SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE 500 (610)
T ss_pred CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCCceEEEEEcCcc
Q psy3145 234 SLEHYIHRVGRTARAGKGGVSVSMAGEVD 262 (396)
Q Consensus 234 s~~~y~qr~GRagR~g~~g~~i~l~~~~e 262 (396)
..++|+||+||+||.|+.|.+.+|++...
T Consensus 501 eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 501 EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999999999999999998653
No 27
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.7e-34 Score=300.36 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=161.6
Q ss_pred ceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 28 GLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
.+.++||||||++++|| |+|.+ ..+.. ++...++.|
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdY-----------------------------------------r~L~~-Lr~~fp~vP 618 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDY-----------------------------------------QGLGI-LKQKFPNIP 618 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHH-----------------------------------------HHHHH-HHHhCCCCC
Confidence 48899999999999999 66666 12222 333345789
Q ss_pred EEEEeecCChhh-------hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHhh-cCCCcEEEEeCChHHHHHHH
Q psy3145 106 TFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVCR-TFKDHTMIFVPTKREAHEMH 171 (396)
Q Consensus 106 ~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iIF~~t~~~~~~l~ 171 (396)
++++|||+++.+ ..+.+|..+.. .++.+.... ......+..++.. ..+.++||||+|++.|+.++
T Consensus 619 ilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~-kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LA 697 (1195)
T PLN03137 619 VLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT-KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVA 697 (1195)
T ss_pred eEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc-hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHH
Confidence 999999999987 23344443322 223333221 1223345555543 34678999999999999999
Q ss_pred HHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC
Q psy3145 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251 (396)
Q Consensus 172 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 251 (396)
..|...|+++..|||+|++.+|..+++.|+.|+++|||||++++||||+|+|++||||++|.|++.|+||+|||||+|..
T Consensus 698 e~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~ 777 (1195)
T PLN03137 698 ERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 777 (1195)
T ss_pred HHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCccHHHHHHHHH
Q psy3145 252 GVSVSMAGEVDRKLVKQVIK 271 (396)
Q Consensus 252 g~~i~l~~~~e~~~~~~i~~ 271 (396)
|.|++|++..|...++.+..
T Consensus 778 g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 778 SSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred ceEEEEecHHHHHHHHHHHh
Confidence 99999999877766666654
No 28
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-33 Score=285.25 Aligned_cols=205 Identities=22% Similarity=0.372 Sum_probs=166.4
Q ss_pred cccceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 25 EVEGLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
...+++++||||||++.+|| |++.+ ..+..+...+ +
T Consensus 124 ~~~~i~~iViDEaH~i~~~g~~fr~~~-----------------------------------------~~l~~l~~~~-~ 161 (470)
T TIGR00614 124 ERKGITLIAVDEAHCISQWGHDFRPDY-----------------------------------------KALGSLKQKF-P 161 (470)
T ss_pred hcCCcCEEEEeCCcccCccccccHHHH-----------------------------------------HHHHHHHHHc-C
Confidence 35679999999999999998 45544 2334444444 4
Q ss_pred CCcEEEEeecCChhh-------hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHh-hcCCCcEEEEeCChHHHH
Q psy3145 103 SKGTFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVC-RTFKDHTMIFVPTKREAH 168 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~iIF~~t~~~~~ 168 (396)
+.|++++|||+++.+ ..+.+|..+.. .++.+.... ......+..++. ...+.++||||+|++.|+
T Consensus 162 ~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~-~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 162 NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKT-PKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCC-ccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 789999999999976 23455554332 222332221 123444445554 444567799999999999
Q ss_pred HHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 169 EMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 169 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|.|+..|+||+|||||.
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCccHHHHHHHHHH
Q psy3145 249 GKGGVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 249 g~~g~~i~l~~~~e~~~~~~i~~~ 272 (396)
|..|.|++|+++.|...++.+...
T Consensus 321 G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 321 GLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999998888877654
No 29
>KOG0327|consensus
Probab=100.00 E-value=2.8e-33 Score=262.75 Aligned_cols=211 Identities=27% Similarity=0.412 Sum_probs=186.2
Q ss_pred ccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE---------
Q psy3145 63 EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL--------- 128 (396)
Q Consensus 63 ~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~--------- 128 (396)
.+..+.+++.++|+.|+ ++ +.||.++|..|++.+|++.|++++|||+|+++ .++++|+.+.+
T Consensus 164 ~l~~~~iKmfvlDEaDE---mL-s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~g 239 (397)
T KOG0327|consen 164 SLSTDGIKMFVLDEADE---ML-SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEG 239 (397)
T ss_pred cccccceeEEeecchHh---hh-ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhh
Confidence 33444555555555555 33 45999999999999999999999999999999 88999999988
Q ss_pred -EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceE
Q psy3145 129 -LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207 (396)
Q Consensus 129 -~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 207 (396)
..+++....+ .|+..|+.+.. .-.+.+|||||++.+..+...|...|+.+.++||.|.+.+|..++..|++|..++
T Consensus 240 ikq~~i~v~k~-~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrv 316 (397)
T KOG0327|consen 240 IKQFYINVEKE-EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRV 316 (397)
T ss_pred eeeeeeecccc-ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceE
Confidence 2333333222 38999999887 5578999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccc
Q psy3145 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 208 LvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~ 280 (396)
||+|+.++||+|+..++.||||++|.+..+|+||+||+||.|++|.++.++++.+...++.+++.+..++++.
T Consensus 317 lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887753
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-32 Score=286.51 Aligned_cols=199 Identities=16% Similarity=0.266 Sum_probs=163.3
Q ss_pred ceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 28 GLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+++++||||||++.+|| |+|.+ ..+..+...+ ++.|
T Consensus 139 ~l~~iVIDEaH~i~~~G~~fr~~y-----------------------------------------~~L~~l~~~~-p~~~ 176 (607)
T PRK11057 139 NPALLAVDEAHCISQWGHDFRPEY-----------------------------------------AALGQLRQRF-PTLP 176 (607)
T ss_pred CCCEEEEeCccccccccCcccHHH-----------------------------------------HHHHHHHHhC-CCCc
Confidence 68999999999999998 66655 2344445555 4789
Q ss_pred EEEEeecCChhh-------hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHH
Q psy3145 106 TFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHI 172 (396)
Q Consensus 106 ~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~ 172 (396)
++++|||+++.+ ..+.+|..... ..+.+.. ...+...+...+....+.++||||+|++.|+.++.
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~--~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~ 254 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVE--KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAA 254 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeee--ccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 999999999876 23456654322 1111211 12344555666666667899999999999999999
Q ss_pred HHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCc
Q psy3145 173 LLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252 (396)
Q Consensus 173 ~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g 252 (396)
.|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+|++||||++|.|..+|+||+|||||.|.+|
T Consensus 255 ~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~ 334 (607)
T PRK11057 255 RLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334 (607)
T ss_pred HHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCccHHHHHHHH
Q psy3145 253 VSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 253 ~~i~l~~~~e~~~~~~i~ 270 (396)
.|++|+++.|...++.+.
T Consensus 335 ~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 335 EAMLFYDPADMAWLRRCL 352 (607)
T ss_pred eEEEEeCHHHHHHHHHHH
Confidence 999999988866555443
No 31
>KOG0339|consensus
Probab=100.00 E-value=8.3e-33 Score=266.17 Aligned_cols=204 Identities=31% Similarity=0.434 Sum_probs=180.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.++.+||+|||++|.++||.|++ +.|.....+++
T Consensus 367 n~~rvS~LV~DEadrmfdmGfe~qV--------------------------------------------rSI~~hirpdr 402 (731)
T KOG0339|consen 367 NLSRVSYLVLDEADRMFDMGFEPQV--------------------------------------------RSIKQHIRPDR 402 (731)
T ss_pred cceeeeEEEEechhhhhccccHHHH--------------------------------------------HHHHhhcCCcc
Confidence 4557888888888888888776666 88999999999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHH-hhcCCCcEEEEeCChHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALV-CRTFKDHTMIFVPTKREA 167 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll-~~~~~~~~iIF~~t~~~~ 167 (396)
|+|+||||++..+ ..|.+|+++.. +.+.+.++ +..|+.+|...| .....+++|||+.-+..+
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s-~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~ 481 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS-EEKKLNWLLRHLVEFSSEGKVLIFVTKKADA 481 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC-cHHHHHHHHHHhhhhccCCcEEEEEeccCCH
Confidence 9999999999999 78899998866 45555544 345666665554 444568999999999999
Q ss_pred HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhccc
Q psy3145 168 HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 168 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR 247 (396)
+.++..|...|++|..+||+|.|.+|.+++.+|+.+...|||+||++++|+|||++.+|||||+-.+.+.|.||+||+||
T Consensus 482 e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgR 561 (731)
T KOG0339|consen 482 EEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGR 561 (731)
T ss_pred HHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 248 AGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 248 ~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
+|..|.+++++++.|..+.-.+.+.+
T Consensus 562 ag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 562 AGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred ccccceeeEEechhhHHHhhHHHHHH
Confidence 99999999999999988777777665
No 32
>KOG0347|consensus
Probab=100.00 E-value=3.6e-32 Score=264.08 Aligned_cols=280 Identities=30% Similarity=0.412 Sum_probs=206.5
Q ss_pred CCCCceEEeCCcccc---cccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC-----CCCcEEEEeecCChh
Q psy3145 45 WYPQTAIVPNLPRLK---FSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC-----WSKGTFQSNASMTSF 116 (396)
Q Consensus 45 f~~~~~Iv~t~~~l~---~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~-----~~~q~ll~SAT~~~~ 116 (396)
.+|++ ||.||+++. .......+.++.+.+.++||+++|+.. |+++++..|+..+. ..+|++.||||++-.
T Consensus 312 ~~p~I-VVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek-ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 312 QRPDI-VVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK-GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred cCCCE-EEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh-ccHHHHHHHHHHhhhhhcccccceEEEEEEeehh
Confidence 46666 667777755 233334556666777777777777655 88999999998876 468999999999865
Q ss_pred h----------------------------hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHhhcCCCc
Q psy3145 117 L----------------------------FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVCRTFKDH 156 (396)
Q Consensus 117 ~----------------------------~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~ 156 (396)
. .+..+|..|+. ..+.| ....|.-.|..++ ..++++
T Consensus 390 ~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C---~~~eKD~ylyYfl-~ryPGr 465 (731)
T KOG0347|consen 390 LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIEC---PPLEKDLYLYYFL-TRYPGR 465 (731)
T ss_pred hcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcC---CccccceeEEEEE-eecCCc
Confidence 5 12234555544 00111 1111222222222 223689
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChh
Q psy3145 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLE 236 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~ 236 (396)
+|||||+...+.+++-+|+..++....+|+.|.|.+|.+.+++|++....||||||+++||+|||+|.|||||.+|.+.+
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3145 237 HYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGE 316 (396)
Q Consensus 237 ~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (396)
.|+||.|||+|++..|..+.|+++.+...++.+++.+.....--. ||- ...++...++.+ .+..+
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpi------------fPv--~~~~m~~lkeRv-rLA~e 610 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPI------------FPV--ETDIMDALKERV-RLARE 610 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCc------------eec--cHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988765433211 221 233433322222 22233
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHhhccccC
Q psy3145 317 VQKILTEEKHDRLLNKADEQVSKAEKMLKEKK 348 (396)
Q Consensus 317 ~~~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~ 348 (396)
+-..+...+.+..-+..+++|...+..+-
T Consensus 611 ---i~~~e~k~~~v~~~~sWlkkaA~el~id~ 639 (731)
T KOG0347|consen 611 ---IDKLEIKSKRVRKEESWLKKAADELGIDV 639 (731)
T ss_pred ---HHHhhhhhhhhhhhHHHHHHHHHHhCCcc
Confidence 33455666777777889999888776653
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-31 Score=283.63 Aligned_cols=218 Identities=21% Similarity=0.227 Sum_probs=169.8
Q ss_pred chhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 22 SDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 22 ~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
+...+.+++++||||||.+.+ .|..++. .....+..+....+
T Consensus 151 ~~~~l~~l~~vViDEah~~~g-~fg~~~~-------------------------------------~il~rL~ri~~~~g 192 (742)
T TIGR03817 151 WARFLRRLRYVVIDECHSYRG-VFGSHVA-------------------------------------LVLRRLRRLCARYG 192 (742)
T ss_pred HHHHHhcCCEEEEeChhhccC-ccHHHHH-------------------------------------HHHHHHHHHHHhcC
Confidence 345688999999999999876 3655541 01234566666778
Q ss_pred CCCcEEEEeecCChhh----hccCCCeEEEE---------EEEEEecC---------------ChhhHHHHHHHHHhhcC
Q psy3145 102 WSKGTFQSNASMTSFL----FLLRPPVLLCL---------LCFRIRKD---------------THLDRKALLAALVCRTF 153 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~----~~l~~p~~i~~---------~~~~~~~~---------------~~~~k~~~l~~ll~~~~ 153 (396)
.++|++++|||+++.. ..+..|..+.. .+..+.+. ....+..++..++..
T Consensus 193 ~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~-- 270 (742)
T TIGR03817 193 ASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE-- 270 (742)
T ss_pred CCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--
Confidence 8899999999999887 34445543321 12222111 122455667776654
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc--------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL--------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKT 225 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~ 225 (396)
+.++||||+|++.|+.++..|+.. +.++..+||++++++|.+++++|++|++++||||+++++|||+|++++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 579999999999999999998764 578899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHHHhhcccCCCCceEEEEEc--CccHHHHHHHHHHcCCCCcc
Q psy3145 226 VINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG--EVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 226 VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~--~~e~~~~~~i~~~~~~~~~~ 279 (396)
||||++|.+..+|+||+|||||.|+.|.++++++ +.|...+..+++..+.+++.
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~ 406 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEA 406 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcc
Confidence 9999999999999999999999999999999986 44555666666555555443
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.98 E-value=8.8e-32 Score=280.77 Aligned_cols=201 Identities=21% Similarity=0.311 Sum_probs=164.6
Q ss_pred ccceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 26 VEGLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+++++||||||++.+|| |+|.+ ..+..+...+| +
T Consensus 125 ~~~l~~iViDEaH~i~~~g~~frp~y-----------------------------------------~~l~~l~~~~~-~ 162 (591)
T TIGR01389 125 RIPIALVAVDEAHCVSQWGHDFRPEY-----------------------------------------QRLGSLAERFP-Q 162 (591)
T ss_pred cCCCCEEEEeCCcccccccCccHHHH-----------------------------------------HHHHHHHHhCC-C
Confidence 3478999999999999998 56655 34455555565 4
Q ss_pred CcEEEEeecCChhh-------hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 104 KGTFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
.+++++|||+++.+ ..+.+|..+.. .++.+... ..+...+..++....+.++||||+|++.|+.+
T Consensus 163 ~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~--~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~l 240 (591)
T TIGR01389 163 VPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKK--NNKQKFLLDYLKKHRGQSGIIYASSRKKVEEL 240 (591)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeC--CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 55999999999987 22334433322 12222221 24566677777666678999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
++.|...|+++..+||+|++.+|..+++.|.+|+++|||||+++++|||+|++++||||++|.|...|+|++|||||.|.
T Consensus 241 a~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 241 AERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHH
Q psy3145 251 GGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~ 270 (396)
.|.|++++++.|...++.+.
T Consensus 321 ~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 321 PAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CceEEEecCHHHHHHHHHHH
Confidence 99999999887765555444
No 35
>KOG0346|consensus
Probab=99.98 E-value=1.2e-31 Score=254.69 Aligned_cols=221 Identities=25% Similarity=0.351 Sum_probs=185.1
Q ss_pred CCceEEeCCccccccc----ccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----
Q psy3145 47 PQTAIVPNLPRLKFSS----EYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL----- 117 (396)
Q Consensus 47 ~~~~Iv~t~~~l~~~~----~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~----- 117 (396)
|++ ||.||++++... ......++++++|+.|... +.||.+++..+.+.+|+..|.+++|||+++++
T Consensus 146 pdI-vV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLll----sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKk 220 (569)
T KOG0346|consen 146 PDI-VVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLL----SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKK 220 (569)
T ss_pred CCe-EEeChHHHHHHHhhccchhhhheeeEEechhhhhh----hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHH
Confidence 444 555555554222 2345566777777776644 44999999999999999999999999999999
Q ss_pred hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEee
Q psy3145 118 FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVC-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELH 185 (396)
Q Consensus 118 ~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lh 185 (396)
.++++|+.+.. ..+.+..+ +.+|+.++..+++ +...++.|||+||...|.++.-.|...|++..++.
T Consensus 221 L~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLN 299 (569)
T KOG0346|consen 221 LFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILN 299 (569)
T ss_pred HhccCCeEEEeccccCCCcccceEEEEEec-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhc
Confidence 78899998877 34444443 6789988888875 44578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEeec-----------------------------------ccccccccCCccEEEEec
Q psy3145 186 GNLTQPSRLESLRKFKDEETDVLIATD-----------------------------------VAARGLDIRGVKTVINYR 230 (396)
Q Consensus 186 g~~~~~~r~~~~~~f~~g~~~vLvaT~-----------------------------------~~~~Gidi~~v~~VI~~~ 230 (396)
|.|+...|..++++|..|-++++|||| -.+||||+.+|.+|+|||
T Consensus 300 seLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD 379 (569)
T KOG0346|consen 300 SELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFD 379 (569)
T ss_pred ccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecC
Confidence 999999999999999999999999999 246899999999999999
Q ss_pred CCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 231 MPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 231 ~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
+|.++.+|+||+|||||++++|.+++|+.+.+..-...++...
T Consensus 380 ~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 380 FPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred CCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 9999999999999999999999999999998877444554444
No 36
>KOG0348|consensus
Probab=99.98 E-value=1.1e-31 Score=260.11 Aligned_cols=215 Identities=27% Similarity=0.340 Sum_probs=167.6
Q ss_pred ccceeEEEeccccccccCCCCCCce-EEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTA-IVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
+..+|+||+||||+++++||...+. |+...... .....--..+|+..
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~--------------------------------~~~e~~~~~lp~q~ 332 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSI--------------------------------QNAECKDPKLPHQL 332 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhc--------------------------------cchhcccccccHHH
Confidence 4569999999999999999988872 11100000 00000011255678
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE------------------------------------EEEEEecCChhhHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL------------------------------------LCFRIRKDTHLDRKA 143 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~------------------------------------~~~~~~~~~~~~k~~ 143 (396)
|.+|+|||+++.+ ..|.||+.|.. +.+.+.++ .-++.
T Consensus 333 q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp--KLRLV 410 (708)
T KOG0348|consen 333 QNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP--KLRLV 410 (708)
T ss_pred HhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCC--chhHH
Confidence 9999999999999 67899999883 12222221 23444
Q ss_pred HHHHHH----hhcCCCcEEEEeCChHHHHHHHHHHHhc----------------------CCceEEeeCCCCHHHHHHHH
Q psy3145 144 LLAALV----CRTFKDHTMIFVPTKREAHEMHILLGLL----------------------GIKAGELHGNLTQPSRLESL 197 (396)
Q Consensus 144 ~l~~ll----~~~~~~~~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~r~~~~ 197 (396)
.|..++ +.....++|||+.+...++.-+..|... +.++.-+||+|+|++|..++
T Consensus 411 ~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 411 ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 444444 3344679999999999999999887532 34678899999999999999
Q ss_pred HHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 198 ~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
..|....-.||+|||+++||+|+|+|++||.||.|.++.+|+||+|||+|+|..|.+++|+.+.|..++..+.+...
T Consensus 491 ~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 491 QEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred HhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999888899999999999999999999999999999999999999999999999999999999998877766543
No 37
>KOG0350|consensus
Probab=99.97 E-value=7e-31 Score=252.82 Aligned_cols=270 Identities=23% Similarity=0.306 Sum_probs=194.2
Q ss_pred cchhcccceeEEEeccccccccCC---CCCCce-EEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHH
Q psy3145 21 DSDKEVEGLRVYVETEACPKANLG---WYPQTA-IVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEI 96 (396)
Q Consensus 21 ~~~~~~~~l~~lViDEAh~~~~~g---f~~~~~-Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~i 96 (396)
.-+-.+.+++||||||||++++.. |.+.+. .+.++-+..... +.++.... ...-+..++...
T Consensus 288 ~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~------------nii~~~~~--~~pt~~~e~~t~ 353 (620)
T KOG0350|consen 288 TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLD------------NIIRQRQA--PQPTVLSELLTK 353 (620)
T ss_pred CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChh------------hhhhhccc--CCchhhHHHHhh
Confidence 445678899999999999999987 555553 222221111000 01111110 112223444444
Q ss_pred HHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE--------------EEEEEecCChhhHHHHHHHHHhhcCCCcE
Q psy3145 97 VVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL--------------LCFRIRKDTHLDRKALLAALVCRTFKDHT 157 (396)
Q Consensus 97 l~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~--------------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 157 (396)
+..+++..+.++||||++..- ..+..|....+ .+..+. ....-|.-.+..++......++
T Consensus 354 ~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv-~~~~~kpl~~~~lI~~~k~~r~ 432 (620)
T KOG0350|consen 354 LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVV-TEPKFKPLAVYALITSNKLNRT 432 (620)
T ss_pred cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceee-cccccchHhHHHHHHHhhcceE
Confidence 445566788999999997766 45566633332 111111 1223566777888877778899
Q ss_pred EEEeCChHHHHHHHHHHH----hcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC
Q psy3145 158 MIFVPTKREAHEMHILLG----LLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH 233 (396)
Q Consensus 158 iIF~~t~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~ 233 (396)
|+|+++...+.+++..|. ...+++.++.|+++...|.+.+++|..|++++|||||+++||||+.+++.|||||+|.
T Consensus 433 lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~ 512 (620)
T KOG0350|consen 433 LCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA 512 (620)
T ss_pred EEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc
Confidence 999999999999999886 3367888899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCC--CccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q psy3145 234 SLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNP--VKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVE 311 (396)
Q Consensus 234 s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (396)
+...|+||+||+||+|+.|.|++++..++...+..+.+..+.. ++...+ +.....+....|.+.++
T Consensus 513 ~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~------------e~~~~~~~~~~Yt~ALE 580 (620)
T KOG0350|consen 513 SDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPI------------EYIFIKDEDDRYTKALE 580 (620)
T ss_pred hhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeec------------CchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888876542 121111 22233344447888887
Q ss_pred HHHHHH
Q psy3145 312 AIEGEV 317 (396)
Q Consensus 312 ~~~~~~ 317 (396)
.+..++
T Consensus 581 sLk~e~ 586 (620)
T KOG0350|consen 581 SLKAEV 586 (620)
T ss_pred HHHHHH
Confidence 776543
No 38
>KOG0334|consensus
Probab=99.97 E-value=6.3e-30 Score=265.50 Aligned_cols=228 Identities=28% Similarity=0.425 Sum_probs=193.6
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
++++-+||+||||++.++||.|++ ..|+..+++.+|
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~--------------------------------------------~~Ii~nlrpdrQ 548 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQI--------------------------------------------TRILQNLRPDRQ 548 (997)
T ss_pred ccccceeeechhhhhheeccCccc--------------------------------------------chHHhhcchhhh
Confidence 445669999999999999999988 247888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhh-cCCCcEEEEeCChHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCR-TFKDHTMIFVPTKREAH 168 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iIF~~t~~~~~ 168 (396)
+++||||+|..+ ..+..|+.+.+ +.+.+.. .+..|+.-|..++.. ....++||||.....|.
T Consensus 549 tvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~-~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 549 TVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCA-IENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEec-CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 999999999999 55678888776 3333433 245677777777743 34789999999999999
Q ss_pred HHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 169 EMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 169 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.+.+.|...|+.+..+||+.++.+|..+++.|++|.+++||||+++++|+|++++.+|||||+|....+|+||+|||||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCccHHHHHHHHHHcCCCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q psy3145 249 GKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313 (396)
Q Consensus 249 g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (396)
|+.|.|++|+.+.+....-.|.+++. .....+ |.++..+..++.++..+.
T Consensus 708 grkg~AvtFi~p~q~~~a~dl~~al~--~~~~~~-------------P~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 708 GRKGAAVTFITPDQLKYAGDLCKALE--LSKQPV-------------PKLLQALSERFKAKQKAG 757 (997)
T ss_pred CccceeEEEeChHHhhhHHHHHHHHH--hccCCC-------------chHHHHHHHHHHhhhhcc
Confidence 99999999999988888888888872 222222 345667777776666554
No 39
>KOG0344|consensus
Probab=99.97 E-value=1e-29 Score=249.78 Aligned_cols=184 Identities=27% Similarity=0.375 Sum_probs=163.4
Q ss_pred ccHHHHHHHHHHCC-CCCcEEEEeecCChhh-----hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHH
Q psy3145 88 EEYNKDTEIVVAYC-WSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALV 149 (396)
Q Consensus 88 ~~~~~i~~il~~~~-~~~q~ll~SAT~~~~~-----~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll 149 (396)
.|+.|+..|++.|. ++..+-+||||++..+ ..+.++..+.+ ..+++ ..+..|...+.+++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~--gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFC--GSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheee--ecchhHHHHHHHHH
Confidence 56788899998874 5777889999999999 45667777766 23333 34557888899999
Q ss_pred hhcCCCcEEEEeCChHHHHHHHHHH-HhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE
Q psy3145 150 CRTFKDHTMIFVPTKREAHEMHILL-GLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN 228 (396)
Q Consensus 150 ~~~~~~~~iIF~~t~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~ 228 (396)
......+++||+.+.++|.+|+..| ...++.+..+||..++.+|.+.+++|+.|++++||||++++||+|+.++++|||
T Consensus 383 ~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 383 ASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred hccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 8888999999999999999999999 677899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 229 YRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 229 ~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
||+|.+.-+|+||+||+||+|+.|.+++|++..+...++-+..-.
T Consensus 463 yD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 463 YDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred cCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 999999999999999999999999999999999988887776543
No 40
>KOG4284|consensus
Probab=99.97 E-value=6.6e-30 Score=252.03 Aligned_cols=213 Identities=19% Similarity=0.259 Sum_probs=180.0
Q ss_pred CCce-EEeCCcccc---cccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----
Q psy3145 47 PQTA-IVPNLPRLK---FSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL----- 117 (396)
Q Consensus 47 ~~~~-Iv~t~~~l~---~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~----- 117 (396)
..+. |++||++++ ....++..+++.+++|+.|. ++..-.|+++|..|+..+|..+|+++||||.|..+
T Consensus 142 k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk---L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Ls 218 (980)
T KOG4284|consen 142 KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK---LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLS 218 (980)
T ss_pred hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh---hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHH
Confidence 3444 445555544 45556666666665555554 45555789999999999999999999999999998
Q ss_pred hccCCCeEEEE-----------EEEEEecCC------hhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc
Q psy3145 118 FLLRPPVLLCL-----------LCFRIRKDT------HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180 (396)
Q Consensus 118 ~~l~~p~~i~~-----------~~~~~~~~~------~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~ 180 (396)
.+|++|..|.. +|+...+.. -..|+..|.+++...+-.+.||||+....|+-++.+|...|+.
T Consensus 219 k~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d 298 (980)
T KOG4284|consen 219 KFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD 298 (980)
T ss_pred HHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC
Confidence 88999987765 455444322 1347788888888888889999999999999999999999999
Q ss_pred eEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcC
Q psy3145 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 181 ~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
|.++.|.|+|.+|..++++++.-.++|||+||+.+||||-+++++|||.|.|.+-..|.||+|||||.|..|.+++|+..
T Consensus 299 ~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~ 378 (980)
T KOG4284|consen 299 VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLED 378 (980)
T ss_pred eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc
Q psy3145 261 VD 262 (396)
Q Consensus 261 ~e 262 (396)
..
T Consensus 379 ~~ 380 (980)
T KOG4284|consen 379 ER 380 (980)
T ss_pred ch
Confidence 43
No 41
>KOG0337|consensus
Probab=99.96 E-value=4.4e-29 Score=236.15 Aligned_cols=193 Identities=32% Similarity=0.439 Sum_probs=171.3
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE------------EEEEEecCChhhHHHHHHHHHh
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL------------LCFRIRKDTHLDRKALLAALVC 150 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~------------~~~~~~~~~~~~k~~~l~~ll~ 150 (396)
||.+++.+++..+|..+|+++||||+|..+ ..+.+|+.+.+ .|+.+++ .+|...|..++.
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~---a~K~aaLl~il~ 256 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK---AEKEAALLSILG 256 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc---HHHHHHHHHHHh
Confidence 345677999999999999999999999887 67788887764 3555543 468888888886
Q ss_pred hcC-CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEe
Q psy3145 151 RTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINY 229 (396)
Q Consensus 151 ~~~-~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~ 229 (396)
... +.+++||+.|+..++.+...|+..|+.+..++|.|++..|...+..|+.++..+||.|++++||+|+|..+.||||
T Consensus 257 ~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 257 GRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred ccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccc
Confidence 544 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 230 ~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
|+|.+..-|+||+||++|+|+.|.++.++.+.+...+-.+...++.++.-...+
T Consensus 337 d~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~ 390 (529)
T KOG0337|consen 337 DFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISH 390 (529)
T ss_pred cCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccch
Confidence 999999999999999999999999999999999999999988888776543333
No 42
>KOG0351|consensus
Probab=99.96 E-value=3.7e-28 Score=257.60 Aligned_cols=203 Identities=22% Similarity=0.325 Sum_probs=173.8
Q ss_pred eeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcE
Q psy3145 29 LRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGT 106 (396)
Q Consensus 29 l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ 106 (396)
+.++|||||||+++|| |||++ ..+..+....| ..++
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Y-----------------------------------------k~l~~l~~~~~-~vP~ 423 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSY-----------------------------------------KRLGLLRIRFP-GVPF 423 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHH-----------------------------------------HHHHHHHhhCC-CCCe
Confidence 8899999999999999 88888 34455555555 4999
Q ss_pred EEEeecCChhh-------hccCCCeEEEE------EEEEEecCC-hhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHH
Q psy3145 107 FQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDT-HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHI 172 (396)
Q Consensus 107 ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~ 172 (396)
|.+|||.+..+ ..+++|..... .++.|.... ...-...+.......+...+||||.++.+|+.++.
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~ 503 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSA 503 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHH
Confidence 99999999988 56777765444 455555543 22233444444455667899999999999999999
Q ss_pred HHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCc
Q psy3145 173 LLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG 252 (396)
Q Consensus 173 ~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g 252 (396)
.|+..|+++..||+||++.+|..+...|..++++|+|||=++|+|||.|+|+.||||++|.|.+.|+|-+|||||+|...
T Consensus 504 ~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s 583 (941)
T KOG0351|consen 504 VLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPS 583 (941)
T ss_pred HHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCccHHHHHHHHHHc
Q psy3145 253 VSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 253 ~~i~l~~~~e~~~~~~i~~~~ 273 (396)
.|++|++..|...++.+....
T Consensus 584 ~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 584 SCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred eeEEecchhHHHHHHHHHHcc
Confidence 999999999988888877765
No 43
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=6.9e-27 Score=243.02 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=141.5
Q ss_pred CcccccccceeecccCCccccccHHHHHHHHHHCC-CCCcEEEEeecCChhh----hccCCCeEEEE--------EEEEE
Q psy3145 67 KKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC-WSKGTFQSNASMTSFL----FLLRPPVLLCL--------LCFRI 133 (396)
Q Consensus 67 ~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~-~~~q~ll~SAT~~~~~----~~l~~p~~i~~--------~~~~~ 133 (396)
..++++++||+|+-..+ -+.+..+++..+ ..+|+++||||+|+.+ .++.+|..+.+ ..+++
T Consensus 290 ~~v~~VVIDEaHEr~~~------~DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQI------GDIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred ccCCEEEccccccCccc------hhHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe
Confidence 44555555555552211 133455555443 4469999999999765 56777776654 22222
Q ss_pred ecCC---------hhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHh
Q psy3145 134 RKDT---------HLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKF 200 (396)
Q Consensus 134 ~~~~---------~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f 200 (396)
.... ...+..++..+... ..++++|||++++..++.+++.|... ++.+..+||+|++. .+.+++|
T Consensus 364 ~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~f 441 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKV 441 (675)
T ss_pred ecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHH
Confidence 1110 12233333333322 23468999999999999999999887 79999999999985 4667787
Q ss_pred -hcCCceEEEeecccccccccCCccEEEEec---CCC---------ChhHHHHHHhhcccCCCCceEEEEEcCccHHHHH
Q psy3145 201 -KDEETDVLIATDVAARGLDIRGVKTVINYR---MPH---------SLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267 (396)
Q Consensus 201 -~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~---~p~---------s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~ 267 (396)
++|+.+|||||+++++|||||+|++||++| .|. |.++|.||+|||||. ++|.|+.|+++.+...++
T Consensus 442 f~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ 520 (675)
T PHA02653 442 YSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIK 520 (675)
T ss_pred hccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHH
Confidence 789999999999999999999999999999 665 889999999999999 699999999987755444
Q ss_pred HHH
Q psy3145 268 QVI 270 (396)
Q Consensus 268 ~i~ 270 (396)
++.
T Consensus 521 ri~ 523 (675)
T PHA02653 521 RID 523 (675)
T ss_pred HHh
Confidence 443
No 44
>KOG0352|consensus
Probab=99.95 E-value=1.7e-27 Score=225.73 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=164.5
Q ss_pred ceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 28 GLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
-++++|||||||+..|| |||++- .+.++ +...++.+
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL-----------------------------------------~LG~L-RS~~~~vp 178 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYL-----------------------------------------TLGSL-RSVCPGVP 178 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchh-----------------------------------------hhhhH-HhhCCCCc
Confidence 38999999999999999 999980 11233 33345888
Q ss_pred EEEEeecCChhh-------hccCCCeEEEE-------EEEEEec-CChhhHHHHHHHHHhhc-------------CCCcE
Q psy3145 106 TFQSNASMTSFL-------FLLRPPVLLCL-------LCFRIRK-DTHLDRKALLAALVCRT-------------FKDHT 157 (396)
Q Consensus 106 ~ll~SAT~~~~~-------~~l~~p~~i~~-------~~~~~~~-~~~~~k~~~l~~ll~~~-------------~~~~~ 157 (396)
-+.++||.++.+ ..|++|+.++- .|+.+.. +.-.+-+..|.+..... ..+-.
T Consensus 179 wvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCG 258 (641)
T KOG0352|consen 179 WVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCG 258 (641)
T ss_pred eEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcce
Confidence 999999999999 67889987754 1221111 00011222333332111 12457
Q ss_pred EEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhH
Q psy3145 158 MIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEH 237 (396)
Q Consensus 158 iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~ 237 (396)
||||.|+..|++++..|...|+.+..||.|+...+|.++.+.+.++++.|++||..+|+|+|-|+|++|||++.|.|...
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~Ag 338 (641)
T KOG0352|consen 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAG 338 (641)
T ss_pred EEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHH
Q psy3145 238 YIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 238 y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~ 272 (396)
|+|..|||||.|...+|-++++..|...+..+.+.
T Consensus 339 YYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 339 YYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred HHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999998877766543
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.3e-26 Score=246.19 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=133.3
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCChhhH-----HHHHHHHHhhcCCCcEEE
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDTHLDR-----KALLAALVCRTFKDHTMI 159 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~~~~k-----~~~l~~ll~~~~~~~~iI 159 (396)
.++...++++.|+++||||++... .++.++..+.+ ..++..... ..+ ...+..++.. ..+++||
T Consensus 137 ~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLV 214 (819)
T TIGR01970 137 LDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS-ETGSILV 214 (819)
T ss_pred HHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecch-hhhHHHHHHHHHHHHHHh-cCCcEEE
Confidence 455666788999999999999876 55655444433 222222211 122 1234444433 3578999
Q ss_pred EeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC---
Q psy3145 160 FVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH--- 233 (396)
Q Consensus 160 F~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~--- 233 (396)
|++++.+++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++|||+++|.
T Consensus 215 Flpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~ 294 (819)
T TIGR01970 215 FLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVAR 294 (819)
T ss_pred EECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccc
Confidence 99999999999999987 478999999999999999999999999999999999999999999999999999874
Q ss_pred ---------------ChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 234 ---------------SLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 234 ---------------s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
|..+|.||+|||||. ++|.|+.|+++.+..
T Consensus 295 yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 295 FDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred cccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345699999999999 599999999976543
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=8.3e-26 Score=242.39 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=136.4
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE--------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEE
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL--------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~--------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF 160 (396)
.+.++.++.+.|+++||||+++.. ..+.++..+.. ..+.........+..++..+ ..+++++||
T Consensus 590 ~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el---~~g~qv~if 666 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRREL---LRGGQVFYV 666 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHH---HcCCeEEEE
Confidence 456677888999999999987765 23445544332 22222221111122222222 236799999
Q ss_pred eCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC-ChhH
Q psy3145 161 VPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH-SLEH 237 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~-s~~~ 237 (396)
|++++.++.+++.|+.. ++++..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++.|. +...
T Consensus 667 ~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 667 HNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQ 746 (926)
T ss_pred ECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHH
Confidence 99999999999999875 78999999999999999999999999999999999999999999999999999975 6789
Q ss_pred HHHHHhhcccCCCCceEEEEEcCc------cHHHHHHHHHH
Q psy3145 238 YIHRVGRTARAGKGGVSVSMAGEV------DRKLVKQVIKN 272 (396)
Q Consensus 238 y~qr~GRagR~g~~g~~i~l~~~~------e~~~~~~i~~~ 272 (396)
|+||+||+||.|+.|.|++++.+. ..+.++.+.+.
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999999999999998643 34455555443
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.94 E-value=3.2e-26 Score=247.13 Aligned_cols=195 Identities=16% Similarity=0.099 Sum_probs=142.1
Q ss_pred hhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 23 DKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 23 ~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
...+.++++|||||+|.+.+.++..++ ...+..+....+.
T Consensus 167 ~~~l~~l~~VVIDE~H~l~~~~RG~~l----------------------------------------~~~L~rL~~l~~~ 206 (876)
T PRK13767 167 REKLRTVKWVIVDEIHSLAENKRGVHL----------------------------------------SLSLERLEELAGG 206 (876)
T ss_pred HHHHhcCCEEEEechhhhccCccHHHH----------------------------------------HHHHHHHHHhcCC
Confidence 346789999999999998876544433 1123444444557
Q ss_pred CCcEEEEeecCChhh---hccC--------CCeEEE-E------E-EEEEec-----CCh----hhHHHHHHHHHhhcCC
Q psy3145 103 SKGTFQSNASMTSFL---FLLR--------PPVLLC-L------L-CFRIRK-----DTH----LDRKALLAALVCRTFK 154 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~---~~l~--------~p~~i~-~------~-~~~~~~-----~~~----~~k~~~l~~ll~~~~~ 154 (396)
..|++++|||+++.. .++. .|..+. . . .+.... ... ......+..++.. +
T Consensus 207 ~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~ 284 (876)
T PRK13767 207 EFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--H 284 (876)
T ss_pred CCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhc--C
Confidence 899999999998733 2221 122211 1 0 011100 000 1122333333332 5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN 228 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~ 228 (396)
+++||||||++.|+.++..|... +..+..+||+|++++|..+++.|++|++++||||+++++|||+|++++||+
T Consensus 285 ~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~ 364 (876)
T PRK13767 285 RTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL 364 (876)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE
Confidence 68999999999999999999763 467999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhhcccCC-CCceEEEEEc
Q psy3145 229 YRMPHSLEHYIHRVGRTARAG-KGGVSVSMAG 259 (396)
Q Consensus 229 ~~~p~s~~~y~qr~GRagR~g-~~g~~i~l~~ 259 (396)
++.|.++.+|+||+||+||.+ ..+.+.+++.
T Consensus 365 ~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 365 LGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999874 3445555544
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=6.7e-26 Score=249.58 Aligned_cols=214 Identities=17% Similarity=0.146 Sum_probs=153.2
Q ss_pred cccccccccCCCCCCCccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCC
Q psy3145 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSF 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~ 83 (396)
|+|=||++...+..-+ .....++++++|||||+|.+.+..+..++
T Consensus 101 dILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~L---------------------------------- 145 (1490)
T PRK09751 101 DILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHL---------------------------------- 145 (1490)
T ss_pred CEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHH----------------------------------
Confidence 5566666665543212 23357899999999999999986665555
Q ss_pred ccccccHHHHHHHHHHCCCCCcEEEEeecCChhh---hccC--CCeEEEE--------EEEEEecCChh-----------
Q psy3145 84 VSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL---FLLR--PPVLLCL--------LCFRIRKDTHL----------- 139 (396)
Q Consensus 84 l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~---~~l~--~p~~i~~--------~~~~~~~~~~~----------- 139 (396)
.-.+..|...++.+.|+|++|||+++.. .++. +|+.+.. ..+.+......
T Consensus 146 ------el~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~ 219 (1490)
T PRK09751 146 ------ALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGE 219 (1490)
T ss_pred ------HHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhcccccccccc
Confidence 1245566666788899999999999844 4443 3544321 11112111100
Q ss_pred ---------hHHHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHhcC-------------------------------
Q psy3145 140 ---------DRKALLAALVCR-TFKDHTMIFVPTKREAHEMHILLGLLG------------------------------- 178 (396)
Q Consensus 140 ---------~k~~~l~~ll~~-~~~~~~iIF~~t~~~~~~l~~~L~~~~------------------------------- 178 (396)
.+..+...++.. ..+.++||||||++.|+.++..|++..
T Consensus 220 ~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1490)
T PRK09751 220 DSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSS 299 (1490)
T ss_pred ccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccc
Confidence 001111222221 235789999999999999999997642
Q ss_pred --CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC-CCceEE
Q psy3145 179 --IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG-KGGVSV 255 (396)
Q Consensus 179 --~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g-~~g~~i 255 (396)
+.+..|||+|++++|..+++.|++|++++||||+.+++|||++++++||||+.|.++.+|+||+||+||.. ..+.++
T Consensus 300 ~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 300 DVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred cceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 12578999999999999999999999999999999999999999999999999999999999999999963 234455
Q ss_pred EEE
Q psy3145 256 SMA 258 (396)
Q Consensus 256 ~l~ 258 (396)
++.
T Consensus 380 i~p 382 (1490)
T PRK09751 380 FFP 382 (1490)
T ss_pred EEe
Confidence 433
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.94 E-value=3.1e-25 Score=242.66 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=131.6
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE--------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEE
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL--------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~--------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF 160 (396)
.+.++.++.++|+++||||+++.. ..+++|..+.. ..+.........+..++..+. .+++++||
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf 815 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREIL---RGGQVYYL 815 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEE
Confidence 455677889999999999988766 45667766543 112221122223444454443 25789999
Q ss_pred eCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC-CChhH
Q psy3145 161 VPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP-HSLEH 237 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p-~s~~~ 237 (396)
||++..++.+++.|... +.++..+||+|++.+|.+++.+|++|+++|||||+++++|+|+|++++||..+.+ .+...
T Consensus 816 ~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred ECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHH
Confidence 99999999999999887 7899999999999999999999999999999999999999999999999954432 34568
Q ss_pred HHHHHhhcccCCCCceEEEEEcC
Q psy3145 238 YIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 238 y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
|+||+||+||.|+.|.|++++..
T Consensus 896 ~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 896 LHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999999754
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=1.8e-25 Score=238.51 Aligned_cols=194 Identities=19% Similarity=0.186 Sum_probs=144.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+++++++|+||+|.+.+.++.+.+ +.+-.-++..+++.
T Consensus 134 ~l~~v~lvViDE~H~l~d~~rg~~l-----------------------------------------e~il~rl~~~~~~~ 172 (737)
T PRK02362 134 WLDDITCVVVDEVHLIDSANRGPTL-----------------------------------------EVTLAKLRRLNPDL 172 (737)
T ss_pred hhhhcCEEEEECccccCCCcchHHH-----------------------------------------HHHHHHHHhcCCCC
Confidence 4678999999999998887666555 11222234456789
Q ss_pred cEEEEeecCChhh---hccC--------CCeEEEEEEE-----E-------EecCChhhHHHHHHHHHhhcCCCcEEEEe
Q psy3145 105 GTFQSNASMTSFL---FLLR--------PPVLLCLLCF-----R-------IRKDTHLDRKALLAALVCRTFKDHTMIFV 161 (396)
Q Consensus 105 q~ll~SAT~~~~~---~~l~--------~p~~i~~~~~-----~-------~~~~~~~~k~~~l~~ll~~~~~~~~iIF~ 161 (396)
|++++|||+++.. .++. +|+.+..... . +...........+...+. .++++||||
T Consensus 173 qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~ 250 (737)
T PRK02362 173 QVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFV 250 (737)
T ss_pred cEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEE
Confidence 9999999998743 2222 2443332110 0 000000122233333332 467999999
Q ss_pred CChHHHHHHHHHHHhc------------------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCc
Q psy3145 162 PTKREAHEMHILLGLL------------------------------------GIKAGELHGNLTQPSRLESLRKFKDEET 205 (396)
Q Consensus 162 ~t~~~~~~l~~~L~~~------------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 205 (396)
+|++.|+.++..|... ...++++||+|++.+|..+++.|++|.+
T Consensus 251 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i 330 (737)
T PRK02362 251 SSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLI 330 (737)
T ss_pred eCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCC
Confidence 9999999998887543 1368999999999999999999999999
Q ss_pred eEEEeecccccccccCCccEEEE----ec-----CCCChhHHHHHHhhcccCCCC--ceEEEEEcCc
Q psy3145 206 DVLIATDVAARGLDIRGVKTVIN----YR-----MPHSLEHYIHRVGRTARAGKG--GVSVSMAGEV 261 (396)
Q Consensus 206 ~vLvaT~~~~~Gidi~~v~~VI~----~~-----~p~s~~~y~qr~GRagR~g~~--g~~i~l~~~~ 261 (396)
+|||||+++++|+|+|.+++||+ || .|.+..+|.||+|||||.|.. |.+++++...
T Consensus 331 ~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 331 KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 99999999999999999999998 76 688999999999999999975 9999998764
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=1.5e-25 Score=238.37 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=133.0
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCChhhHHH-----HHHHHHhhcCCCcEEE
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDTHLDRKA-----LLAALVCRTFKDHTMI 159 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~iI 159 (396)
.++++.++++.|+++||||++... .++.++..+.+ ...++... ...+.. .+..++.. ..+++||
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~-~~~~~~~~v~~~l~~~l~~-~~g~iLV 217 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLP-AHQRFDEAVARATAELLRQ-ESGSLLL 217 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCc-hhhhHHHHHHHHHHHHHHh-CCCCEEE
Confidence 456677888999999999999775 55555444433 22222221 122222 34444432 3689999
Q ss_pred EeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC---
Q psy3145 160 FVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH--- 233 (396)
Q Consensus 160 F~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~--- 233 (396)
|++++.+++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++|||+++|.
T Consensus 218 Flpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~ 297 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAR 297 (812)
T ss_pred EcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccc
Confidence 99999999999999987 578899999999999999999999999999999999999999999999999988774
Q ss_pred ---------------ChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 234 ---------------SLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 234 ---------------s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|..+|.||+|||||.+ +|.|+.|+++.+.
T Consensus 298 yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~-~G~cyrL~t~~~~ 341 (812)
T PRK11664 298 FDPKTGLTRLVTQRISQASMTQRAGRAGRLE-PGICLHLYSKEQA 341 (812)
T ss_pred ccccCCcceeEEEeechhhhhhhccccCCCC-CcEEEEecCHHHH
Confidence 3468999999999994 9999999997654
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=2e-25 Score=233.97 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=124.4
Q ss_pred ccHHHHHHHHHHC--CCC---CcEEEEeecCChhh-----hccCCCeEEEEE---------EEEEecCChhhHHHHHHHH
Q psy3145 88 EEYNKDTEIVVAY--CWS---KGTFQSNASMTSFL-----FLLRPPVLLCLL---------CFRIRKDTHLDRKALLAAL 148 (396)
Q Consensus 88 ~~~~~i~~il~~~--~~~---~q~ll~SAT~~~~~-----~~l~~p~~i~~~---------~~~~~~~~~~~k~~~l~~l 148 (396)
+|.+.+..|++.+ ++. +|+++||||+|..+ ..+.+|..+.+. ...+.. ....|...+...
T Consensus 185 gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v-~~e~Kl~~lv~~ 263 (844)
T TIGR02621 185 AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPP-SDEKFLSTMVKE 263 (844)
T ss_pred ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEec-ChHHHHHHHHHH
Confidence 5677888999864 443 79999999999765 344566544440 111221 222333322221
Q ss_pred H---hhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHH-----HHHHHhhc----CC-------ceEEE
Q psy3145 149 V---CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL-----ESLRKFKD----EE-------TDVLI 209 (396)
Q Consensus 149 l---~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~-----~~~~~f~~----g~-------~~vLv 209 (396)
+ ....++++||||||++.|+.+++.|...++ ..+||+|++.+|. .++++|++ |+ ..|||
T Consensus 264 L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 264 LNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred HHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 1 123457899999999999999999998887 8899999999999 78999987 44 68999
Q ss_pred eecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC-ceEEEEEc
Q psy3145 210 ATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG-GVSVSMAG 259 (396)
Q Consensus 210 aT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~-g~~i~l~~ 259 (396)
||+++++||||+. ++||++..| .++|+||+||+||.|+. +..++++.
T Consensus 342 ATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred ccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 9999999999986 899998877 68999999999999985 44456553
No 53
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.92 E-value=6.5e-25 Score=215.83 Aligned_cols=157 Identities=22% Similarity=0.179 Sum_probs=116.7
Q ss_pred CCCcEEEEeecCChhh-hcc----CC--CeEEE--------EEEEEEecCChhhHHHHHHHHHhh-cCCCcEEEEeCChH
Q psy3145 102 WSKGTFQSNASMTSFL-FLL----RP--PVLLC--------LLCFRIRKDTHLDRKALLAALVCR-TFKDHTMIFVPTKR 165 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~-~~l----~~--p~~i~--------~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iIF~~t~~ 165 (396)
.+.|+++||||+|+.+ .++ .. +..+. ...+.........+...+..++.. ..++++||||+|++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVD 233 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 5789999999999876 111 11 10000 011111111122345555555543 24679999999999
Q ss_pred HHHHHHHHHHhcCC--ceEEeeCCCCHHHHHH----HHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHH
Q psy3145 166 EAHEMHILLGLLGI--KAGELHGNLTQPSRLE----SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239 (396)
Q Consensus 166 ~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~ 239 (396)
.|+.++..|.+.+. .+..+||++++.+|.. +++.|++|+.++||||+++++|+|++ +++||++..| +.+|+
T Consensus 234 ~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~i 310 (358)
T TIGR01587 234 RAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLI 310 (358)
T ss_pred HHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHH
Confidence 99999999988776 5999999999999976 48999999999999999999999995 8999998777 78999
Q ss_pred HHHhhcccCCCC----ceEEEEEcCc
Q psy3145 240 HRVGRTARAGKG----GVSVSMAGEV 261 (396)
Q Consensus 240 qr~GRagR~g~~----g~~i~l~~~~ 261 (396)
||+||+||.|+. |.++++....
T Consensus 311 qr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 311 QRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999864 3666666543
No 54
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.92 E-value=1.9e-24 Score=234.58 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=140.5
Q ss_pred hhcccceeEEEecccc-ccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 23 DKEVEGLRVYVETEAC-PKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 23 ~~~~~~l~~lViDEAh-~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
++.+.+++++|||||| +.++.+|... .+..++...
T Consensus 181 d~~Ls~~~~IIIDEAHERsLn~DfLLg-------------------------------------------~Lk~lL~~r- 216 (1294)
T PRK11131 181 DRLLMQYDTIIIDEAHERSLNIDFILG-------------------------------------------YLKELLPRR- 216 (1294)
T ss_pred CCccccCcEEEecCccccccccchHHH-------------------------------------------HHHHhhhcC-
Confidence 4567888999999999 4666543211 133444332
Q ss_pred CCCcEEEEeecCChhh--hccC-CCeEEEE-------EEEEEecCC--hhhHHHHHHHHH------hhcCCCcEEEEeCC
Q psy3145 102 WSKGTFQSNASMTSFL--FLLR-PPVLLCL-------LCFRIRKDT--HLDRKALLAALV------CRTFKDHTMIFVPT 163 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~--~~l~-~p~~i~~-------~~~~~~~~~--~~~k~~~l~~ll------~~~~~~~~iIF~~t 163 (396)
++.|+++||||++... .++. .| .+.+ ...+..... ...+.+.+..++ .....+.+|||+++
T Consensus 217 pdlKvILmSATid~e~fs~~F~~ap-vI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 217 PDLKVIITSATIDPERFSRHFNNAP-IIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred CCceEEEeeCCCCHHHHHHHcCCCC-EEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 4789999999998655 3333 34 2333 222222111 111222222222 23346789999999
Q ss_pred hHHHHHHHHHHHhcCCc---eEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec----------
Q psy3145 164 KREAHEMHILLGLLGIK---AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR---------- 230 (396)
Q Consensus 164 ~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~---------- 230 (396)
...++.+++.|...+++ +..+||+|++.+|..+++. .|..+||||||++++|||||+|++|||++
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999988764 6789999999999999886 47889999999999999999999999986
Q ss_pred -----CC---CChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 231 -----MP---HSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 231 -----~p---~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
+| .|..+|.||+|||||.+ +|.|+.|+++.+..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~~-~G~c~rLyte~d~~ 414 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRVS-EGICIRLYSEDDFL 414 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCCC-CcEEEEeCCHHHHH
Confidence 33 46689999999999994 99999999976544
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=1.9e-23 Score=220.58 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=119.8
Q ss_pred HHHCCCCCcEEEEeecCChhh---hcc--CCCeEEE--------EEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCC
Q psy3145 97 VVAYCWSKGTFQSNASMTSFL---FLL--RPPVLLC--------LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPT 163 (396)
Q Consensus 97 l~~~~~~~q~ll~SAT~~~~~---~~l--~~p~~i~--------~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t 163 (396)
+...+..+++++||||+++.. ... .++..+. +....+.........+.+...+ ..+.+++|||++
T Consensus 403 l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ 480 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYVVCPL 480 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEEEEcc
Confidence 444456789999999987665 111 1111111 1122222211111112233322 246799999995
Q ss_pred h--------HHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC
Q psy3145 164 K--------REAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH 233 (396)
Q Consensus 164 ~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~ 233 (396)
. ..++.+++.|... ++++..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++.|.
T Consensus 481 ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 481 IEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER 560 (681)
T ss_pred cccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC
Confidence 4 4567778888765 57899999999999999999999999999999999999999999999999999997
Q ss_pred -ChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 234 -SLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 234 -s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
....|.||+||+||.|..|.|++++.
T Consensus 561 ~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 561 FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 57888999999999999999999995
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.91 E-value=5.1e-24 Score=226.91 Aligned_cols=193 Identities=16% Similarity=0.152 Sum_probs=141.4
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+++++++|+||+|.+.+.++.+. +..++..++..
T Consensus 134 ~~l~~l~lvViDE~H~l~~~~rg~~--------------------------------------------le~il~~l~~~ 169 (720)
T PRK00254 134 SWIKDVKLVVADEIHLIGSYDRGAT--------------------------------------------LEMILTHMLGR 169 (720)
T ss_pred hhhhcCCEEEEcCcCccCCccchHH--------------------------------------------HHHHHHhcCcC
Confidence 3467899999999998877655433 35667778888
Q ss_pred CcEEEEeecCChhh---hccC--------CCeEEEE-----EEEEEecCCh----hhHHHHHHHHHhhcCCCcEEEEeCC
Q psy3145 104 KGTFQSNASMTSFL---FLLR--------PPVLLCL-----LCFRIRKDTH----LDRKALLAALVCRTFKDHTMIFVPT 163 (396)
Q Consensus 104 ~q~ll~SAT~~~~~---~~l~--------~p~~i~~-----~~~~~~~~~~----~~k~~~l~~ll~~~~~~~~iIF~~t 163 (396)
.|++++|||+++.. .++. .|+.+.. .+........ ......+...+. .++++||||+|
T Consensus 170 ~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~s 247 (720)
T PRK00254 170 AQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNT 247 (720)
T ss_pred CcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcC
Confidence 99999999997644 3332 2332211 1111111100 111223334443 35799999999
Q ss_pred hHHHHHHHHHHHh---------------------------------cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEe
Q psy3145 164 KREAHEMHILLGL---------------------------------LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIA 210 (396)
Q Consensus 164 ~~~~~~l~~~L~~---------------------------------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 210 (396)
++.|+.++..|.. ....+.++||+|++.+|..+++.|++|.++||||
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 9999888766632 1235899999999999999999999999999999
Q ss_pred ecccccccccCCccEEEE-------ecCCC-ChhHHHHHHhhcccCC--CCceEEEEEcCcc
Q psy3145 211 TDVAARGLDIRGVKTVIN-------YRMPH-SLEHYIHRVGRTARAG--KGGVSVSMAGEVD 262 (396)
Q Consensus 211 T~~~~~Gidi~~v~~VI~-------~~~p~-s~~~y~qr~GRagR~g--~~g~~i~l~~~~e 262 (396)
|+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++...+
T Consensus 328 T~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 328 TPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999994 55554 5679999999999975 5699999987654
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.91 E-value=2.4e-23 Score=220.59 Aligned_cols=204 Identities=16% Similarity=0.147 Sum_probs=142.1
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+++++++|+||||++.+.++.+.. +.+...++..+++
T Consensus 131 ~~l~~v~lvViDEaH~l~d~~rg~~l-----------------------------------------e~ll~~~~~~~~~ 169 (674)
T PRK01172 131 YIINDVGLIVADEIHIIGDEDRGPTL-----------------------------------------ETVLSSARYVNPD 169 (674)
T ss_pred hHHhhcCEEEEecchhccCCCccHHH-----------------------------------------HHHHHHHHhcCcC
Confidence 34778999999999998876665544 2223334556678
Q ss_pred CcEEEEeecCChhh---hccC--------CCeEEEE--EE---EEEecCChhhHHHHHHHHHhh--cCCCcEEEEeCChH
Q psy3145 104 KGTFQSNASMTSFL---FLLR--------PPVLLCL--LC---FRIRKDTHLDRKALLAALVCR--TFKDHTMIFVPTKR 165 (396)
Q Consensus 104 ~q~ll~SAT~~~~~---~~l~--------~p~~i~~--~~---~~~~~~~~~~k~~~l~~ll~~--~~~~~~iIF~~t~~ 165 (396)
.|++++|||+++.. .++. .|+.+.. .+ ..... ....... +..++.. ..++++||||+|++
T Consensus 170 ~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~-~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~ 247 (674)
T PRK01172 170 ARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDG-YERSQVD-INSLIKETVNDGGQVLVFVSSRK 247 (674)
T ss_pred CcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecc-ccccccc-HHHHHHHHHhCCCcEEEEeccHH
Confidence 99999999998654 2221 2333322 11 11110 1111111 2222222 23679999999999
Q ss_pred HHHHHHHHHHhc-------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 166 EAHEMHILLGLL-------------------------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 166 ~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
.|+.++..|... ...+.++||+|++.+|..+++.|++|.++|||||+++++|+|+
T Consensus 248 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvni 327 (674)
T PRK01172 248 NAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNL 327 (674)
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCC
Confidence 999999988643 1257889999999999999999999999999999999999999
Q ss_pred CCccEEEEecC---------CCChhHHHHHHhhcccCCC--CceEEEEEcCcc-HHHHHHHHH
Q psy3145 221 RGVKTVINYRM---------PHSLEHYIHRVGRTARAGK--GGVSVSMAGEVD-RKLVKQVIK 271 (396)
Q Consensus 221 ~~v~~VI~~~~---------p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~e-~~~~~~i~~ 271 (396)
|+..+|| .+. |.++.+|.||+|||||.|. .|.+++++...+ ...++++..
T Consensus 328 pa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 328 PARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred cceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc
Confidence 9865444 443 5688999999999999985 477888765433 444555443
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=4.7e-23 Score=216.05 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=97.3
Q ss_pred CCCcEEEEeCCh--------HHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCC
Q psy3145 153 FKDHTMIFVPTK--------REAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 222 (396)
.+.+++|||++. ..++.+++.|... ++++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 367899999875 4567788877754 788999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC-ChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 223 VKTVINYRMPH-SLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 223 v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
+++||+++.|. +...|.||+||+||.|+.|.|++++.
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999996 67889999999999999999999983
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.90 E-value=3.4e-23 Score=216.14 Aligned_cols=214 Identities=21% Similarity=0.216 Sum_probs=169.5
Q ss_pred cccccccccCCCCCCCccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCC
Q psy3145 4 DLLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSF 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~ 83 (396)
|+|=||++...+.--+....+.+.+++++||||.|.+.+....-+..+
T Consensus 125 dILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl-------------------------------- 172 (814)
T COG1201 125 HILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLAL-------------------------------- 172 (814)
T ss_pred cEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhh--------------------------------
Confidence 688899999999888889999999999999999999888665555411
Q ss_pred ccccccHHHHHHHHHHCCCCCcEEEEeecCChhh---hccC---CCeEEEE-------EEEEEecCCh--------hhHH
Q psy3145 84 VSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL---FLLR---PPVLLCL-------LCFRIRKDTH--------LDRK 142 (396)
Q Consensus 84 l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~---~~l~---~p~~i~~-------~~~~~~~~~~--------~~k~ 142 (396)
.+..+....+ +.|.+.+|||..+.. .+|. +|..|.. .+-.+.+... ....
T Consensus 173 --------~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 173 --------SLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred --------hHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHH
Confidence 2344444455 899999999997766 3332 1444432 2222222111 2234
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcC-CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLG-IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR 221 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 221 (396)
..+..++++. ..+|||+||+..++.++..|+..+ ..+..+||+++.++|..+.++|++|+++++|||+.++.|||+.
T Consensus 244 ~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 4555555443 489999999999999999999887 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhhccc-CCCCceEEEEEcC
Q psy3145 222 GVKTVINYRMPHSLEHYIHRVGRTAR-AGKGGVSVSMAGE 260 (396)
Q Consensus 222 ~v~~VI~~~~p~s~~~y~qr~GRagR-~g~~g~~i~l~~~ 260 (396)
+++.||+|+.|.++..++||+||+|+ .|...+++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999984 5666777777665
No 60
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=1.8e-22 Score=211.56 Aligned_cols=175 Identities=25% Similarity=0.371 Sum_probs=148.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC-
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM- 231 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~- 231 (396)
.+.++||||+|+..++.++..|...|+++..+||++++.+|..+++.|+.|++.++|||+.+++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCChhHHHHHHhhcccCCCCceEEEEEcCc---------cHHHHHHHHHHcCCCCccccCCCCCCCCCCCCCCCCC
Q psy3145 232 ----PHSLEHYIHRVGRTARAGKGGVSVSMAGEV---------DRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPP 298 (396)
Q Consensus 232 ----p~s~~~y~qr~GRagR~g~~g~~i~l~~~~---------e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (396)
|.+..+|+||+||+||. ..|.+++|++.. +....++++..++ .+...+|.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~-------------- 587 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYN--EEHGITPK-------------- 587 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhh--hccCCCCh--------------
Confidence 78999999999999996 689999999854 4445555555554 33445555
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhccccC
Q psy3145 299 LAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKK 348 (396)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~ 348 (396)
.+++.+...++..+.. +.+.++..++.+...+.+|.+|.+.++++.
T Consensus 588 --~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~M~~aa~~l~fE~ 633 (652)
T PRK05298 588 --TIKKKIRDILDSVYKK--DKLSKKELEKLIKELEKQMKEAAKNLEFEE 633 (652)
T ss_pred --hHHHHHHHHHHhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6777777777655442 356778888999999999999998888754
No 61
>KOG0329|consensus
Probab=99.90 E-value=1.2e-24 Score=194.27 Aligned_cols=188 Identities=23% Similarity=0.374 Sum_probs=142.9
Q ss_pred CCCceEEeCCccccc---ccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----
Q psy3145 46 YPQTAIVPNLPRLKF---SSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL----- 117 (396)
Q Consensus 46 ~~~~~Iv~t~~~l~~---~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~----- 117 (396)
+|++ ++.||++++. ...++...+++.+ +|+++.|+.+.+.+..+.+|++..|...|+++||||+++.+
T Consensus 161 ~Phi-vVgTPGrilALvr~k~l~lk~vkhFv---lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 161 CPHI-VVGTPGRILALVRNRSLNLKNVKHFV---LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred CCeE-EEcCcHHHHHHHHhccCchhhcceee---hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHH
Confidence 5555 5566666543 2333344444444 46666677788889999999999999999999999999999
Q ss_pred hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeC
Q psy3145 118 FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHG 186 (396)
Q Consensus 118 ~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg 186 (396)
.++.+|..|.+ +.+++.- .+..|..-+.+++....-.+++||+.+... |
T Consensus 237 kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL-ke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l------------ 296 (387)
T KOG0329|consen 237 KFMQDPMEIFVDDEAKLTLHGLQQYYVKL-KENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L------------ 296 (387)
T ss_pred hhhcCchhhhccchhhhhhhhHHHHHHhh-hhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h------------
Confidence 89999998877 1222221 334566677777777777899999998775 1
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcC-ccHHH
Q psy3145 187 NLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE-VDRKL 265 (396)
Q Consensus 187 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~-~e~~~ 265 (396)
+ |+ -+ +|||++++||+||..++.|||||+|.+..+|+||+|||||.|..|.+++|++. .+...
T Consensus 297 --~----------f~---kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~i 360 (387)
T KOG0329|consen 297 --S----------FQ---KR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 360 (387)
T ss_pred --h----------hh---hh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHH
Confidence 0 21 23 89999999999999999999999999999999999999999999999999985 44555
Q ss_pred HHHHHHHc
Q psy3145 266 VKQVIKNA 273 (396)
Q Consensus 266 ~~~i~~~~ 273 (396)
+..+....
T Consensus 361 Ln~vqdRf 368 (387)
T KOG0329|consen 361 LNPVQDRF 368 (387)
T ss_pred hchhhHhh
Confidence 55554443
No 62
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=2.7e-22 Score=214.86 Aligned_cols=182 Identities=15% Similarity=0.218 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH-HhcCCceEEeeCCCCHHHHHHHHHHhhcC--CceEEEeecccc
Q psy3145 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILL-GLLGIKAGELHGNLTQPSRLESLRKFKDE--ETDVLIATDVAA 215 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~ 215 (396)
..|...|..++....+.|+||||+++..+..+++.| ...|+++..+||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 357778888888777889999999999999999999 46699999999999999999999999984 599999999999
Q ss_pred cccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCC--CCccccCCCCCCCCCCCC
Q psy3145 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKN--PVKHRIIPPGYPRLKTPS 293 (396)
Q Consensus 216 ~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 293 (396)
+|+|++.+++|||||+|||+..|.||+||+||.|+++.+.+++...+......+.+-+.. .+....+|.
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~--------- 628 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT--------- 628 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC---------
Confidence 999999999999999999999999999999999999988777765554455555554443 455555554
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy3145 294 FPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQV 337 (396)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 337 (396)
.+.+.+.+...+...-. .....+..+..++......
T Consensus 629 -----~~~v~~~~~~~l~~~l~---~~~~~~~~~~li~~~~~~~ 664 (956)
T PRK04914 629 -----GRALYDEFGDELIPYLA---SPDDTDGLDELIAETREQH 664 (956)
T ss_pred -----HHHHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHHH
Confidence 66777766666544321 1113345666666644433
No 63
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=1.1e-22 Score=221.50 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=140.5
Q ss_pred hhcccceeEEEecccc-ccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 23 DKEVEGLRVYVETEAC-PKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 23 ~~~~~~l~~lViDEAh-~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
++.+.+++++|||||| +.++.+|.-. -+..++...
T Consensus 174 d~~L~~~~~IIIDEaHERsL~~D~LL~-------------------------------------------lLk~il~~r- 209 (1283)
T TIGR01967 174 DRFLSRYDTIIIDEAHERSLNIDFLLG-------------------------------------------YLKQLLPRR- 209 (1283)
T ss_pred CcccccCcEEEEcCcchhhccchhHHH-------------------------------------------HHHHHHhhC-
Confidence 4567888899999999 3555432111 235555544
Q ss_pred CCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCC-----hhhHHHHHHHHHh---hcCCCcEEEEeCCh
Q psy3145 102 WSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDT-----HLDRKALLAALVC---RTFKDHTMIFVPTK 164 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~-----~~~k~~~l~~ll~---~~~~~~~iIF~~t~ 164 (396)
++.|+++||||++... .++.+...+.+ ...+..... ..++...+...+. ....+.+|||+++.
T Consensus 210 pdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 210 PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred CCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 4789999999998655 44433222333 111111111 1123333333222 22457999999999
Q ss_pred HHHHHHHHHHHhcC---CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC---------
Q psy3145 165 REAHEMHILLGLLG---IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP--------- 232 (396)
Q Consensus 165 ~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p--------- 232 (396)
.+++.+++.|...+ +.+..+||+|++++|..+++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998764 4588999999999999987654 246899999999999999999999999853
Q ss_pred ---------CChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 233 ---------HSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 233 ---------~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
.|..+|.||+|||||.| +|.|+.|+++.+..
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 36789999999999999 99999999976554
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.89 E-value=4.4e-23 Score=202.05 Aligned_cols=195 Identities=19% Similarity=0.221 Sum_probs=156.1
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+.+++.+||||.|.+-+.-..|.. +|+ -.-++.+.++
T Consensus 334 ~~lgdiGtVVIDEiHtL~deERG~RL-------------------------------dGL----------I~RLr~l~~~ 372 (830)
T COG1202 334 KDLGDIGTVVIDEIHTLEDEERGPRL-------------------------------DGL----------IGRLRYLFPG 372 (830)
T ss_pred CcccccceEEeeeeeeccchhcccch-------------------------------hhH----------HHHHHHhCCC
Confidence 56677899999999987776555555 122 2335556669
Q ss_pred CcEEEEeecCChhh-----------hccCCCeEEEEEEEEEecCChhhHHHHHHHHHhh--------cCCCcEEEEeCCh
Q psy3145 104 KGTFQSNASMTSFL-----------FLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCR--------TFKDHTMIFVPTK 164 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----------~~l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~--------~~~~~~iIF~~t~ 164 (396)
.|.+.+|||..+.. .+-..|+.+.-+.+..+ ++..|.+++..+.+. ...+++|||++|+
T Consensus 373 AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~--~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SR 450 (830)
T COG1202 373 AQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFAR--NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSR 450 (830)
T ss_pred CeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeec--CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecch
Confidence 99999999997766 33456776655555554 345788888888753 2358999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE---ecCCC-ChhHHHH
Q psy3145 165 REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN---YRMPH-SLEHYIH 240 (396)
Q Consensus 165 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~---~~~p~-s~~~y~q 240 (396)
+.|+.++..|..+|+++.+||+||+..+|..+...|.++++.++|+|.+++.|+|+|.-.+|+. .+.-| |+..|.|
T Consensus 451 rr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~Q 530 (830)
T COG1202 451 RRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQ 530 (830)
T ss_pred hhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996665542 34444 8999999
Q ss_pred HHhhcccCCC--CceEEEEEcCc
Q psy3145 241 RVGRTARAGK--GGVSVSMAGEV 261 (396)
Q Consensus 241 r~GRagR~g~--~g~~i~l~~~~ 261 (396)
+.|||||-+- .|++++++.+.
T Consensus 531 M~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 531 MLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HhcccCCCCcccCceEEEEecCC
Confidence 9999999874 49999998653
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.88 E-value=9.4e-22 Score=201.25 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=96.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEee-cccccccccCCccEEEEecCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT-DVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi~~v~~VI~~~~p 232 (396)
+.+++|||++.+.++.+++.|...|.++..+||+|++.+|..+++.|++|+..+|||| +++++|+|+|++++||++..|
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~ 423 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPS 423 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCC
Confidence 5689999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred CChhHHHHHHhhcccCCCCceEEEEE
Q psy3145 233 HSLEHYIHRVGRTARAGKGGVSVSMA 258 (396)
Q Consensus 233 ~s~~~y~qr~GRagR~g~~g~~i~l~ 258 (396)
.|...|+||+||++|.+..+...+++
T Consensus 424 ~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 424 KSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999998655444443
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=99.87 E-value=1.3e-21 Score=214.83 Aligned_cols=136 Identities=26% Similarity=0.269 Sum_probs=110.1
Q ss_pred CCcEEEEeecCChh-h--hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH---
Q psy3145 103 SKGTFQSNASMTSF-L--FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE--- 166 (396)
Q Consensus 103 ~~q~ll~SAT~~~~-~--~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~--- 166 (396)
.+|+++||||+++. + ..++++..+.+ ...++... ++...+..++.... .++||||+|+..
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ 343 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEY 343 (1176)
T ss_pred CceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHH
Confidence 78999999999875 3 33455544433 22222221 46677777776554 689999999887
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEe----ecccccccccCC-ccEEEEecCCC------Ch
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIA----TDVAARGLDIRG-VKTVINYRMPH------SL 235 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-v~~VI~~~~p~------s~ 235 (396)
|+.+++.|+..|+++..+||+| .+.+++|++|+++|||| |++++||||+|+ +++|||||+|. ..
T Consensus 344 ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~ 418 (1176)
T PRK09401 344 AEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEE 418 (1176)
T ss_pred HHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEecccc
Confidence 9999999999999999999999 23459999999999999 699999999999 89999999998 67
Q ss_pred hHHHHHHhhccc
Q psy3145 236 EHYIHRVGRTAR 247 (396)
Q Consensus 236 ~~y~qr~GRagR 247 (396)
..|.||+||+..
T Consensus 419 ~~~~~~~~r~~~ 430 (1176)
T PRK09401 419 LAPPFLLLRLLS 430 (1176)
T ss_pred ccCHHHHHHHHh
Confidence 889999999953
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=1.4e-21 Score=218.93 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=130.6
Q ss_pred HHHHHHHCCCCCc-EEEEeecCChh--h-hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEE
Q psy3145 93 DTEIVVAYCWSKG-TFQSNASMTSF--L-FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTM 158 (396)
Q Consensus 93 i~~il~~~~~~~q-~ll~SAT~~~~--~-~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~i 158 (396)
+...+..+|..+| ++++|||+++. . ..+++|..+.+ ...++.. ....+ ..+..++... +.++|
T Consensus 258 l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~-~~~~k-~~L~~ll~~~-g~~gI 334 (1638)
T PRK14701 258 LNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNP-EKIIK-EHVRELLKKL-GKGGL 334 (1638)
T ss_pred hhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEEC-CHHHH-HHHHHHHHhC-CCCeE
Confidence 3333445566777 57799999963 2 55677766655 2222222 22223 4566777655 56899
Q ss_pred EEeCChHH---HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEee----cccccccccCC-ccEEEEec
Q psy3145 159 IFVPTKRE---AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT----DVAARGLDIRG-VKTVINYR 230 (396)
Q Consensus 159 IF~~t~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-v~~VI~~~ 230 (396)
|||+|++. |+.+++.|...|+++..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||||
T Consensus 335 VF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~ 409 (1638)
T PRK14701 335 IFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYG 409 (1638)
T ss_pred EEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeC
Confidence 99999886 589999999999999999995 8899999999999999999 58999999999 99999999
Q ss_pred CCC---ChhHHHHHH-------------hhcccCCCCceEEEEEcCccHHHHHHHHH
Q psy3145 231 MPH---SLEHYIHRV-------------GRTARAGKGGVSVSMAGEVDRKLVKQVIK 271 (396)
Q Consensus 231 ~p~---s~~~y~qr~-------------GRagR~g~~g~~i~l~~~~e~~~~~~i~~ 271 (396)
+|. +...|.|.. ||+||.|..+.++......+...++++.+
T Consensus 410 ~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 410 VPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred CCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 999 888777766 99999998888876666666666655543
No 68
>KOG0349|consensus
Probab=99.86 E-value=1.6e-21 Score=185.45 Aligned_cols=216 Identities=25% Similarity=0.323 Sum_probs=157.5
Q ss_pred CceEEeCCc-ccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC------CCcEEEEeecCChhh---
Q psy3145 48 QTAIVPNLP-RLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW------SKGTFQSNASMTSFL--- 117 (396)
Q Consensus 48 ~~~Iv~t~~-~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~------~~q~ll~SAT~~~~~--- 117 (396)
.+.|++++| ++...-....-.+.+..+..+|+++.++.. ++-+.|.....++|. ..|.++.|||+..-.
T Consensus 339 g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk 417 (725)
T KOG0349|consen 339 GTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKK 417 (725)
T ss_pred CceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeee
Confidence 456665555 444322222223444566666777766644 777888888888773 589999999996543
Q ss_pred ---hccCCCeEEEE----------EEEEEec---------------------------------CChhhHHHHHH-----
Q psy3145 118 ---FLLRPPVLLCL----------LCFRIRK---------------------------------DTHLDRKALLA----- 146 (396)
Q Consensus 118 ---~~l~~p~~i~~----------~~~~~~~---------------------------------~~~~~k~~~l~----- 146 (396)
..|.-|.-+.. +++.+.. +.......+|.
T Consensus 418 ~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v 497 (725)
T KOG0349|consen 418 VGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGV 497 (725)
T ss_pred hhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhh
Confidence 34555555544 1111100 00111111111
Q ss_pred HHHhhcCCCcEEEEeCChHHHHHHHHHHHhcC---CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCc
Q psy3145 147 ALVCRTFKDHTMIFVPTKREAHEMHILLGLLG---IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGV 223 (396)
Q Consensus 147 ~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v 223 (396)
..+++..-.++||||.|+..|+.+-+++...| +.|.++||+..+.+|.+.++.|+.+.+++|||||+++||+||.++
T Consensus 498 ~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 498 VAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred hhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 11233345699999999999999999998875 689999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 224 KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 224 ~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
-++||..+|.+...|+||+||.||+-+-|.+|+++.....+
T Consensus 578 p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ek 618 (725)
T KOG0349|consen 578 PFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEK 618 (725)
T ss_pred ceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchh
Confidence 99999999999999999999999999999999987643333
No 69
>KOG0353|consensus
Probab=99.86 E-value=3.2e-21 Score=180.86 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=157.6
Q ss_pred cceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 27 EGLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 27 ~~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
..+.++-|||.||-..|| |||++ ....|++..-++.
T Consensus 214 ~~~~~iaidevhccsqwghdfr~dy------------------------------------------~~l~ilkrqf~~~ 251 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCSQWGHDFRPDY------------------------------------------KALGILKRQFKGA 251 (695)
T ss_pred ceeEEEeecceeehhhhCcccCcch------------------------------------------HHHHHHHHhCCCC
Confidence 346788899999999999 88888 1134555555689
Q ss_pred cEEEEeecCChhh-----------------hccCCCeEEEEEEEEEe--cCChhhHHHHHHHHHhhc-CCCcEEEEeCCh
Q psy3145 105 GTFQSNASMTSFL-----------------FLLRPPVLLCLLCFRIR--KDTHLDRKALLAALVCRT-FKDHTMIFVPTK 164 (396)
Q Consensus 105 q~ll~SAT~~~~~-----------------~~l~~p~~i~~~~~~~~--~~~~~~k~~~l~~ll~~~-~~~~~iIF~~t~ 164 (396)
+++.++||.++.+ ..++.|. .++.++ +..+.+-.+-+..++... .+...||||-++
T Consensus 252 ~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~n----l~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq 327 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPN----LKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQ 327 (695)
T ss_pred ceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCC----ceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEecc
Confidence 9999999999988 1233332 122222 233444455555555444 367889999999
Q ss_pred HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHH----
Q psy3145 165 REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIH---- 240 (396)
Q Consensus 165 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~q---- 240 (396)
+.|+.++..|+..|+.+..||..|.+.+|..+-+.+-.|+++|+|||-++++|||-|+|++|||..+|.|.+.|+|
T Consensus 328 ~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasar 407 (695)
T KOG0353|consen 328 KDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASAR 407 (695)
T ss_pred ccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------HHhhcccCCCCceEEEEEcCccH
Q psy3145 241 ---------------------------------------RVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 241 ---------------------------------------r~GRagR~g~~g~~i~l~~~~e~ 263 (396)
..||+||.+.+..|++++.-.|.
T Consensus 408 illrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 408 ILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999999999999886554
No 70
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=1.8e-20 Score=195.47 Aligned_cols=188 Identities=22% Similarity=0.331 Sum_probs=140.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec--
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR-- 230 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~-- 230 (396)
.+.++||||+|++.++.++..|.+.|+++..+||++++.+|.++++.|+.|++.|||||+.+++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHH-c------CCCCccccCCCCCCCCCCCCCCCCChH
Q psy3145 231 ---MPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKN-A------KNPVKHRIIPPGYPRLKTPSFPPPPLA 300 (396)
Q Consensus 231 ---~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (396)
.|.+..+|+||+|||||. ..|.+++|++..+..+.+.+.+. . .....+..+|.++.... .
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~---------~ 590 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPI---------R 590 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcch---------H
Confidence 799999999999999998 48999999998776655555443 1 11223344444332111 1
Q ss_pred HHHH-HHHHH--HHHHH-HHH-HhhcCHHHHHHHHHHHHHHHHHHHhhccccCCC
Q psy3145 301 EIVD-KYRAK--VEAIE-GEV-QKILTEEKHDRLLNKADEQVSKAEKMLKEKKPL 350 (396)
Q Consensus 301 ~~~~-~~~~~--~~~~~-~~~-~~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~~i 350 (396)
+.+. ....+ ..... ... ...+...++++.+...+.+|.+|.+.++++.+.
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~M~~aa~~l~FE~Aa 645 (655)
T TIGR00631 591 DILDIELKEKEDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEEAA 645 (655)
T ss_pred HHhhhhhhcccchhhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1111 00000 00000 000 011355678888888899999888887776543
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.86 E-value=1.1e-20 Score=185.51 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=75.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLG--IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~ 230 (396)
.++++||||+|++.++.++..|+..| +.+..+||.+++.+|.++ ++.++||||+++++|||++.+ +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 46799999999999999999998864 578899999999988754 378899999999999999987 566 55
Q ss_pred CCCChhHHHHHHhhcc
Q psy3145 231 MPHSLEHYIHRVGRTA 246 (396)
Q Consensus 231 ~p~s~~~y~qr~GRag 246 (396)
|.+..+|+||+||+|
T Consensus 343 -p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCCHHHHhhhcccCC
Confidence 999999999999987
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.2e-21 Score=196.71 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=123.4
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE--------EEEEEecCChhhHHHHHHHHHhhc--CCCcEEEEeCChHHHHH
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL--------LCFRIRKDTHLDRKALLAALVCRT--FKDHTMIFVPTKREAHE 169 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~--------~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~ 169 (396)
.+..||||.+... .+..+|+.|.. ....+.. ....|...|..++... .+.++||||+|+..++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 4456799998766 34445555544 1111211 3456788888877553 25789999999999999
Q ss_pred HHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC---Ccc-----EEEEecCCCChhHHHHH
Q psy3145 170 MHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR---GVK-----TVINYRMPHSLEHYIHR 241 (396)
Q Consensus 170 l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~v~-----~VI~~~~p~s~~~y~qr 241 (396)
++..|...|+++..+||.+++. +..+..|..+...|+|||++++||+||+ +|. +||||++|.|...|.||
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 9999999999999999986554 4555556656667999999999999999 676 99999999999999999
Q ss_pred HhhcccCCCCceEEEEEcCccH
Q psy3145 242 VGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 242 ~GRagR~g~~g~~i~l~~~~e~ 263 (396)
+|||||.|.+|.+++|++.+|.
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccccCCCCCeEEEEEechhHH
Confidence 9999999999999999997654
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.84 E-value=6.3e-20 Score=197.62 Aligned_cols=122 Identities=32% Similarity=0.404 Sum_probs=109.6
Q ss_pred hHHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCC--------CCHHHHHHHHHHhhcCCceE
Q psy3145 140 DRKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGN--------LTQPSRLESLRKFKDEETDV 207 (396)
Q Consensus 140 ~k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~--------~~~~~r~~~~~~f~~g~~~v 207 (396)
.|...|..++.. ..+.++||||+++.+|+.+++.|...|+.+..+||. |++.+|..++++|++|+.++
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~v 426 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCE
Confidence 355555555543 457899999999999999999999999999999986 99999999999999999999
Q ss_pred EEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCcc
Q psy3145 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262 (396)
Q Consensus 208 LvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e 262 (396)
||||+++++|+|+|++++||+||.|+|+..|+||+||+||.| +|.+++++....
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 999999999999999999999999999999999999999998 588998887554
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.84 E-value=1e-19 Score=200.11 Aligned_cols=135 Identities=25% Similarity=0.312 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCCCc--EEEEeec-CChhh--hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCC
Q psy3145 91 NKDTEIVVAYCWSKG--TFQSNAS-MTSFL--FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKD 155 (396)
Q Consensus 91 ~~i~~il~~~~~~~q--~ll~SAT-~~~~~--~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~ 155 (396)
.++..+++.+|..+| +++|||| .|..+ ..++++..+.+ ...++... .+...|..++... +.
T Consensus 252 ~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l-~~ 327 (1171)
T TIGR01054 252 KKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKL-GT 327 (1171)
T ss_pred HHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc---cHHHHHHHHHHHc-CC
Confidence 445556667777777 5668999 56555 34555554443 22222221 1234566666554 46
Q ss_pred cEEEEeCCh---HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEee----cccccccccCC-ccEEE
Q psy3145 156 HTMIFVPTK---REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT----DVAARGLDIRG-VKTVI 227 (396)
Q Consensus 156 ~~iIF~~t~---~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-v~~VI 227 (396)
++||||+|+ +.|+.++..|...|+++..+||++++ .++++|++|+++||||| ++++||||+|+ |++||
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI 403 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAV 403 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEE
Confidence 899999999 99999999999999999999999973 68999999999999994 89999999999 89999
Q ss_pred EecCCC
Q psy3145 228 NYRMPH 233 (396)
Q Consensus 228 ~~~~p~ 233 (396)
|||+|.
T Consensus 404 ~~~~P~ 409 (1171)
T TIGR01054 404 FLGVPK 409 (1171)
T ss_pred EECCCC
Confidence 999873
No 75
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=5.9e-20 Score=178.87 Aligned_cols=124 Identities=30% Similarity=0.396 Sum_probs=108.5
Q ss_pred HHHHHHHHH----hhcCCCcEEEEeCChHHHHHHHHHHHhcCCceE-Eee--------CCCCHHHHHHHHHHhhcCCceE
Q psy3145 141 RKALLAALV----CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAG-ELH--------GNLTQPSRLESLRKFKDEETDV 207 (396)
Q Consensus 141 k~~~l~~ll----~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~lh--------g~~~~~~r~~~~~~f~~g~~~v 207 (396)
|+..+..++ .+..+.++|||++.+.+|+.+...|...|..+. .+- .||+|.++.+++++|++|+++|
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nV 428 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNV 428 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceE
Confidence 555555554 344568999999999999999999999988774 333 4699999999999999999999
Q ss_pred EEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHH
Q psy3145 208 LIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL 265 (396)
Q Consensus 208 LvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~ 265 (396)
||||++++.|+|||+++.||.|+.-.|+..++||.|||||. +.|.+++|+++.+++.
T Consensus 429 LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrde 485 (542)
T COG1111 429 LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDE 485 (542)
T ss_pred EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHH
Confidence 99999999999999999999999999999999999999998 5899999999875443
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=5.4e-19 Score=183.91 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC-CceEEEeeccccc
Q psy3145 140 DRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE-ETDVLIATDVAAR 216 (396)
Q Consensus 140 ~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~ 216 (396)
.|...+..++... .+.++||||++...++.++..| .+..+||++++.+|..++++|+.| .+++||+|+++++
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgde 554 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDT 554 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccc
Confidence 3555555566544 5689999999999999998887 256799999999999999999875 8899999999999
Q ss_pred ccccCCccEEEEecCC-CChhHHHHHHhhcccCCCCceE-------EEEEcCccH
Q psy3145 217 GLDIRGVKTVINYRMP-HSLEHYIHRVGRTARAGKGGVS-------VSMAGEVDR 263 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~-------i~l~~~~e~ 263 (396)
|+|+|++++||+++.| .|...|+||+||++|.+..|.+ +.|++....
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999998 5999999999999999876664 778876543
No 77
>KOG0354|consensus
Probab=99.82 E-value=3.2e-19 Score=182.73 Aligned_cols=124 Identities=33% Similarity=0.431 Sum_probs=102.9
Q ss_pred HHHHHHHHHh----hcCCCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeC--------CCCHHHHHHHHHHhhcCCc
Q psy3145 141 RKALLAALVC----RTFKDHTMIFVPTKREAHEMHILLGL---LGIKAGELHG--------NLTQPSRLESLRKFKDEET 205 (396)
Q Consensus 141 k~~~l~~ll~----~~~~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg--------~~~~~~r~~~~~~f~~g~~ 205 (396)
|+..+...+. .....++||||.++..|+.+..+|.. .|++...+-| +|++.++.+++++|++|++
T Consensus 396 kle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~ 475 (746)
T KOG0354|consen 396 KLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEI 475 (746)
T ss_pred hHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCc
Confidence 4444444442 23457999999999999999999973 2455555544 7999999999999999999
Q ss_pred eEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHH
Q psy3145 206 DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLV 266 (396)
Q Consensus 206 ~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~ 266 (396)
++||||+++++|+||+.|+.||-||.-.|+...+||.|| ||+. .|+++++.+..+...+
T Consensus 476 NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~~~~ 534 (746)
T KOG0354|consen 476 NVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEVIEF 534 (746)
T ss_pred cEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhHHHH
Confidence 999999999999999999999999999999999999999 9987 7899888885444333
No 78
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.3e-19 Score=172.71 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=165.7
Q ss_pred CCcEEEEeecCChhhh---------------ccCCCeEEEEEEEEEecCChhhHHHHHHHHHhh-cCCCcEEEEeCChHH
Q psy3145 103 SKGTFQSNASMTSFLF---------------LLRPPVLLCLLCFRIRKDTHLDRKALLAALVCR-TFKDHTMIFVPTKRE 166 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~~---------------~l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iIF~~t~~~ 166 (396)
..|+++.|||+.+... .|-||. +.+++. ..+-.+++.++-.. ..+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~------ievRp~-~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE------IEVRPT-KGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc------eeeecC-CCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 5799999999998872 233343 334443 33455666666543 346899999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC-----CCChhHHHHH
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM-----PHSLEHYIHR 241 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~-----p~s~~~y~qr 241 (396)
|+.+.++|.+.|+++.++|++..--+|.+++..++.|.++|||.-+.+..|+|+|.|++|..+|. ..|..+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999885 5699999999
Q ss_pred HhhcccCCCCceEEEEEcCccHHHHHHHH---------HHcCCCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy3145 242 VGRTARAGKGGVSVSMAGEVDRKLVKQVI---------KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEA 312 (396)
Q Consensus 242 ~GRagR~g~~g~~i~l~~~~e~~~~~~i~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (396)
+|||+|.- .|.++++.+.-...+-+.+. .+++ -.+++.|.++.. .+.+++...... .+
T Consensus 539 IGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN--~~hgItP~ti~K---------~i~d~l~~~~~~-~~ 605 (663)
T COG0556 539 IGRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYN--EEHGITPQTIKK---------KIRDILDGEYEE-DE 605 (663)
T ss_pred HHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHH--HhcCCCchhhhh---------hhhHhhhhhhhh-hh
Confidence 99999987 79999998754433333332 2221 224444442221 111222111100 11
Q ss_pred HHHHHH---hhcCHHHHHHHHHHHHHHHHHHHhhccccCCC
Q psy3145 313 IEGEVQ---KILTEEKHDRLLNKADEQVSKAEKMLKEKKPL 350 (396)
Q Consensus 313 ~~~~~~---~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~~i 350 (396)
...... ..+...+.++.+...+.+|.+|.+.++++.++
T Consensus 606 ~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa 646 (663)
T COG0556 606 YKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAA 646 (663)
T ss_pred hhhhcccccccCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 111111 23568889999999999999999888887544
No 79
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=3.5e-19 Score=148.83 Aligned_cols=118 Identities=39% Similarity=0.658 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 140 DRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 140 ~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
.|...+..++.... ++++||||++...++.+++.|...+..+..+||++++.+|..+++.|++|...+|++|+.+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777776554 7899999999999999999999889999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 218 idi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
+|+|++++||.++.|++...|.|++||+||.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887754
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.8e-19 Score=187.62 Aligned_cols=123 Identities=22% Similarity=0.190 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..|...+...+.. ..+.++||||+|++.++.++..|...|+++..+||.+.+.++..+..+++.| +|+|||++++|
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 4677777777754 3578999999999999999999999999999999999999988888888776 69999999999
Q ss_pred cccc---CCcc-----EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 217 GLDI---RGVK-----TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 217 Gidi---~~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|+|| |+|. +||||++|.|...|.||+|||||.|.+|.+++|++.+|.
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999 7998 999999999999999999999999999999999987654
No 81
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=4e-19 Score=135.64 Aligned_cols=78 Identities=44% Similarity=0.698 Sum_probs=75.6
Q ss_pred HHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC
Q psy3145 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249 (396)
Q Consensus 172 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g 249 (396)
+.|+..|+++..+||++++.+|..+++.|++++..+||||+++++|+|+|++++||+++.|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999987
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.77 E-value=9.5e-18 Score=177.16 Aligned_cols=194 Identities=17% Similarity=0.154 Sum_probs=137.0
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+..+++|||||+|.+.+-...|.... +-.-.+......
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~-----------------------------------------iv~r~~~~~~~~ 181 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLES-----------------------------------------IVARMRRLNELI 181 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehh-----------------------------------------HHHHHHhhCcce
Confidence 456799999999998888666665511 112223333458
Q ss_pred cEEEEeecCChhh---hccCC--------CeEEE------EEEEEEecCCh----hhHHHHHHHHHhh-cCCCcEEEEeC
Q psy3145 105 GTFQSNASMTSFL---FLLRP--------PVLLC------LLCFRIRKDTH----LDRKALLAALVCR-TFKDHTMIFVP 162 (396)
Q Consensus 105 q~ll~SAT~~~~~---~~l~~--------p~~i~------~~~~~~~~~~~----~~k~~~l~~ll~~-~~~~~~iIF~~ 162 (396)
|++.+|||+|+.. .+++- |+... ..+........ ......+...+.. ..+++++|||+
T Consensus 182 rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~ 261 (766)
T COG1204 182 RIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVH 261 (766)
T ss_pred EEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 9999999999988 33321 21111 12222221110 1112233333322 33679999999
Q ss_pred ChHHHHHHHHHHHhc-------------------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCc
Q psy3145 163 TKREAHEMHILLGLL-------------------------------------GIKAGELHGNLTQPSRLESLRKFKDEET 205 (396)
Q Consensus 163 t~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 205 (396)
|++.+...++.|+.. -..+++||+||+...|.-+.+.|+.|.+
T Consensus 262 sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~i 341 (766)
T COG1204 262 SRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKI 341 (766)
T ss_pred cCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCc
Confidence 999999999998731 1246889999999999999999999999
Q ss_pred eEEEeecccccccccCCccEEE----Eec-----CCCChhHHHHHHhhcccCCCC--ceEEEEEc
Q psy3145 206 DVLIATDVAARGLDIRGVKTVI----NYR-----MPHSLEHYIHRVGRTARAGKG--GVSVSMAG 259 (396)
Q Consensus 206 ~vLvaT~~~~~Gidi~~v~~VI----~~~-----~p~s~~~y~qr~GRagR~g~~--g~~i~l~~ 259 (396)
+||+||+.++.|+|+|.-.+|| .|+ .+-++-+|.|+.|||||.|-. |.++++.+
T Consensus 342 kVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 342 KVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred eEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 9999999999999999666666 366 566899999999999999854 77887773
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=4.9e-18 Score=176.91 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 138 HLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 138 ~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
...|...+...+.. ..+.++||||+|+..++.++..|...|+++..+||.+.+.++..+..+++.| .|+|||++++
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAg 483 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAG 483 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccc
Confidence 34577777776644 4578999999999999999999999999999999999999998888888777 6999999999
Q ss_pred cccccC---------CccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 216 RGLDIR---------GVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 216 ~Gidi~---------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
||+||+ ++.+|++|+.|..... .||+|||||.|.+|.+++|++..|.
T Consensus 484 RGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 484 RGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999 9999999999988766 9999999999999999999987654
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.75 E-value=2.3e-17 Score=176.08 Aligned_cols=105 Identities=21% Similarity=0.360 Sum_probs=88.5
Q ss_pred HHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHhcC---CceEEeeCCCCHHHH----HHHHHHh-hcCC---ceEEEe
Q psy3145 143 ALLAALVCR-TFKDHTMIFVPTKREAHEMHILLGLLG---IKAGELHGNLTQPSR----LESLRKF-KDEE---TDVLIA 210 (396)
Q Consensus 143 ~~l~~ll~~-~~~~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r----~~~~~~f-~~g~---~~vLva 210 (396)
.++..++.. ..+++++|||||++.|+.+++.|++.+ ..+..+||.+++.+| .++++.| ++|+ ..||||
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 444444443 346789999999999999999998765 679999999999998 4567788 6666 479999
Q ss_pred ecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 211 TDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 211 T~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
|+++++|+|+ +++++|....| .+.|+||+||+||.++
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 68999999888 6799999999999986
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.74 E-value=7.6e-17 Score=163.25 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=122.2
Q ss_pred HHHHHCCC-CCcEEEEeecCChhhhcc---C----------CCeEEEEEEEEEecCChhhHHHHHHHHHhhc-CCCcEEE
Q psy3145 95 EIVVAYCW-SKGTFQSNASMTSFLFLL---R----------PPVLLCLLCFRIRKDTHLDRKALLAALVCRT-FKDHTMI 159 (396)
Q Consensus 95 ~il~~~~~-~~q~ll~SAT~~~~~~~l---~----------~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iI 159 (396)
..++.-.. .+-.+.||||+-|....| . .|-+-.+..+.+.... +..++..+.... .+.++.+
T Consensus 402 ~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~---~~~v~e~i~~ei~~GrQaY~ 478 (677)
T COG1200 402 LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHER---RPEVYERIREEIAKGRQAYV 478 (677)
T ss_pred HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecccc---HHHHHHHHHHHHHcCCEEEE
Confidence 34444444 577889999997766111 1 0111222444454332 333333333222 4678888
Q ss_pred EeCChH--------HHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEe
Q psy3145 160 FVPTKR--------EAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINY 229 (396)
Q Consensus 160 F~~t~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~ 229 (396)
-|+-.+ .|+.+++.|+.. ++++..+||.|++.++.+++++|++|+++|||||.+.+.|||+|+.+++|..
T Consensus 479 VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe 558 (677)
T COG1200 479 VCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIE 558 (677)
T ss_pred EeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEe
Confidence 887654 456777777744 5679999999999999999999999999999999999999999999999998
Q ss_pred cCC-CChhHHHHHHhhcccCCCCceEEEEEcCcc
Q psy3145 230 RMP-HSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262 (396)
Q Consensus 230 ~~p-~s~~~y~qr~GRagR~g~~g~~i~l~~~~e 262 (396)
+.- .-.++..|-.||+||.+.++.|++++.+..
T Consensus 559 ~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 559 NAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred chhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 865 468899999999999999999999998766
No 86
>KOG0922|consensus
Probab=99.74 E-value=4.9e-17 Score=163.18 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=128.2
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCChhhHHHHHHH---HHhhcCCCcEEEEe
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDTHLDRKALLAA---LVCRTFKDHTMIFV 161 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~~~~k~~~l~~---ll~~~~~~~~iIF~ 161 (396)
+.|++..+ +..++++|||+.... .++.+...+.+ +.++......+.-.+.+.. +-...+.+-+|||.
T Consensus 187 Kki~~~R~-~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFL 265 (674)
T KOG0922|consen 187 KKILKKRP-DLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFL 265 (674)
T ss_pred HHHHhcCC-CceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEe
Confidence 44555443 578999999999888 55655323333 2333333322233333332 32345578999999
Q ss_pred CChHHHHHHHHHHHhc----CC----ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC--
Q psy3145 162 PTKREAHEMHILLGLL----GI----KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM-- 231 (396)
Q Consensus 162 ~t~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~-- 231 (396)
...++.+.+++.|.+. +- -+.++||.|+.+++.++++.-..|.-+|++||++++..+.|+++.+||+.++
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceE
Confidence 9999999999999765 11 2468999999999999999999999999999999999999999999998663
Q ss_pred ----------------CCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 232 ----------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 232 ----------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|-|..+-.||.|||||.| +|+|+-++++.+.
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 668999999999999999 9999999987554
No 87
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.74 E-value=3.7e-17 Score=169.45 Aligned_cols=124 Identities=20% Similarity=0.153 Sum_probs=110.8
Q ss_pred hhHHHHHHHHH--hhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALV--CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll--~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..|...+...+ ....+.|+||||+|+..++.++..|...|+++..+||. +.+|+..+.+|..+...|+|||+++||
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgR 465 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGR 465 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccC
Confidence 34555555444 23457899999999999999999999999999999998 889999999999999999999999999
Q ss_pred ccccCC-------ccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 217 GLDIRG-------VKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 217 Gidi~~-------v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
|+||+. .-+||+++.|.|...|.||+|||||.|.+|.+.+|++.+|.-
T Consensus 466 GtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 466 GTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred CcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 999998 459999999999999999999999999999999999977643
No 88
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.3e-17 Score=175.80 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=133.0
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCChhh-HHHHHHHHH---hhcCCCcEEE
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDTHLD-RKALLAALV---CRTFKDHTMI 159 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~~~~-k~~~l~~ll---~~~~~~~~iI 159 (396)
+..++...+++..+|+||||+...- .++.+.-.+.+ +..+........ -.+.+...+ .....+.+||
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEE
Confidence 4667778888899999999999887 66775444444 222222222222 222222222 2334789999
Q ss_pred EeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC----
Q psy3145 160 FVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM---- 231 (396)
Q Consensus 160 F~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~---- 231 (396)
|.+.....+..++.|.+ ....+.++||.|+..++.++++.-..|+-+|++||++++.+|.||+|.+||+.+.
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~ 344 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEK 344 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccc
Confidence 99999999999999987 3478999999999999999998888887789999999999999999999998663
Q ss_pred --------------CCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 232 --------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 232 --------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|-|..+..||.|||||.+ +|.|+-++++.+.
T Consensus 345 ~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 345 RYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred ccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 568899999999999999 9999999987443
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=176.44 Aligned_cols=206 Identities=18% Similarity=0.166 Sum_probs=153.2
Q ss_pred CCCCccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHH
Q psy3145 16 PNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTE 95 (396)
Q Consensus 16 ~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~ 95 (396)
.+..+.+-..++.+++||+||+|.+.+. |..++ .++ ...+..
T Consensus 183 lr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~v--------------------------------A~l-----lRRL~~ 224 (851)
T COG1205 183 LRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEV--------------------------------ALL-----LRRLLR 224 (851)
T ss_pred ccCcchHHHHHhcCcEEEEecceecccc-chhHH--------------------------------HHH-----HHHHHH
Confidence 5556666677778999999999966552 33333 111 245566
Q ss_pred HHHHCCCCCcEEEEeecCChhh----hccCCCeEEEE----------EEEEEecC----C---hhhHHHHHHHHHhhc--
Q psy3145 96 IVVAYCWSKGTFQSNASMTSFL----FLLRPPVLLCL----------LCFRIRKD----T---HLDRKALLAALVCRT-- 152 (396)
Q Consensus 96 il~~~~~~~q~ll~SAT~~~~~----~~l~~p~~i~~----------~~~~~~~~----~---~~~k~~~l~~ll~~~-- 152 (396)
+++..+.+.|+++.|||+.+.- .....+....+ .++...+. . ...+...+..+....
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~ 304 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVR 304 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHH
Confidence 7777778999999999998776 33333333322 22222220 0 113334444443322
Q ss_pred CCCcEEEEeCChHHHHHHH----HHHHhcC----CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCcc
Q psy3145 153 FKDHTMIFVPTKREAHEMH----ILLGLLG----IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVK 224 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~ 224 (396)
.+-++|+|+.+++.++.++ ..+...+ ..+..++|+|...+|.++...|+.|++.++++|++++.|+|+.+++
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 3679999999999999997 3444445 5789999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-ChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 225 TVINYRMPH-SLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 225 ~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
.||+++.|. +..+++||+||+||.++.+..+....
T Consensus 385 avi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 385 AVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999 89999999999999997777777766
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.5e-16 Score=166.28 Aligned_cols=123 Identities=22% Similarity=0.171 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..|...+...+.. ..+.|+||||+|+..++.++..|...|+++..+||.+.+.++..+..+++.|. |+|||+.+||
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGR 500 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGR 500 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccC
Confidence 4566677766633 36789999999999999999999999999999999999888888888888877 9999999999
Q ss_pred cccc---CCcc-----EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 217 GLDI---RGVK-----TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 217 Gidi---~~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|+|| ++|. +||+++.|.|...|.|+.|||||.|.+|.+.+|++.+|.
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 9999 4899 999999999999999999999999999999999987654
No 91
>KOG0923|consensus
Probab=99.72 E-value=2.7e-16 Score=156.78 Aligned_cols=258 Identities=16% Similarity=0.177 Sum_probs=162.4
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh--hccCC-CeEEEE------EEEEEecCChhhHHHHHHHHHh---hcCCCcEEEE
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL--FLLRP-PVLLCL------LCFRIRKDTHLDRKALLAALVC---RTFKDHTMIF 160 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~--~~l~~-p~~i~~------~~~~~~~~~~~~k~~~l~~ll~---~~~~~~~iIF 160 (396)
+..|.+.. ++..+++.|||+...- .++.+ |+.... ..++-.......-.+.+..+++ ..+.+.+|||
T Consensus 401 vKDIar~R-pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 401 VKDIARFR-PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred HHHHHhhC-CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 45555544 5888999999998887 33433 322211 1222222222233333444443 2335789999
Q ss_pred eCChHHHHHHHHHHHhc---------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC
Q psy3145 161 VPTKREAHEMHILLGLL---------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM 231 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~ 231 (396)
.......+...+.|... .+-+.++|++++.+.+..+++.--.|--+|++||++++..+.|++|.+||+-++
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99998888777776543 345788999999999999999999999999999999999999999999998663
Q ss_pred ------------------CCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCCC--------C
Q psy3145 232 ------------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP--------G 285 (396)
Q Consensus 232 ------------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~--------~ 285 (396)
|.|..+-.||+|||||.| +|+|+-+++.. .+...++......|....+.. +
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~t~PEIqRtnL~nvVL~LkSLG 636 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW--AYEHELEEMTVPEIQRTNLGNVVLLLKSLG 636 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh--hhhhhhccCCCcceeeccchhHHHHHHhcC
Confidence 668899999999999999 99999999853 222333333322232222222 2
Q ss_pred CCCCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH-------------H-----HHHHHHHHhhccc
Q psy3145 286 YPRLKTP-SFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNK-------------A-----DEQVSKAEKMLKE 346 (396)
Q Consensus 286 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------------~-----~~~~~~a~~~l~~ 346 (396)
+..+.+. .+.||+.+.+.. -.+.+-.+.. ++..-+..++.+.+.. . ..++-....||..
T Consensus 637 I~Dl~~FdFmDpPp~etL~~-aLE~LyaLGA-Ln~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~ 714 (902)
T KOG0923|consen 637 IHDLIHFDFLDPPPTETLLK-ALEQLYALGA-LNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSV 714 (902)
T ss_pred cchhcccccCCCCChHHHHH-HHHHHHHhhc-cccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhc
Confidence 3334444 445555544443 2233332221 1111111222222211 1 3466677788888
Q ss_pred cCCCccCCcc
Q psy3145 347 KKPLHENPPR 356 (396)
Q Consensus 347 ~~~i~~~~~~ 356 (396)
..++..+|+.
T Consensus 715 ~~svfyrpk~ 724 (902)
T KOG0923|consen 715 GASVFYRPKD 724 (902)
T ss_pred Cchheecchh
Confidence 8888888776
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=4.7e-16 Score=158.69 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=84.2
Q ss_pred HHHHHHHHHhc--CCceEEeeCCCCHHHH--HHHHHHhhcCCceEEEeecccccccccCCccEEE--EecCCC-------
Q psy3145 167 AHEMHILLGLL--GIKAGELHGNLTQPSR--LESLRKFKDEETDVLIATDVAARGLDIRGVKTVI--NYRMPH------- 233 (396)
Q Consensus 167 ~~~l~~~L~~~--~~~~~~lhg~~~~~~r--~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI--~~~~p~------- 233 (396)
++++.+.|... +.++..+|++++...+ ..+++.|++|+.+|||+|+++++|+|+|++++|+ |+|...
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57888888776 7889999999987766 8999999999999999999999999999999885 555422
Q ss_pred ---ChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHH
Q psy3145 234 ---SLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269 (396)
Q Consensus 234 ---s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i 269 (396)
....|+|++||+||.++.|.+++.....+...++.+
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHH
Confidence 246789999999999999999976654444444443
No 93
>KOG0950|consensus
Probab=99.71 E-value=6.2e-17 Score=167.54 Aligned_cols=226 Identities=19% Similarity=0.179 Sum_probs=160.3
Q ss_pred ccccccCCCCCCCccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccc
Q psy3145 7 KTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSS 86 (396)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~ 86 (396)
-|||++..+.|...+..+.. .++.+||||-|.+++.|..-...
T Consensus 321 ~tiEkanslin~lie~g~~~-~~g~vvVdElhmi~d~~rg~~lE------------------------------------ 363 (1008)
T KOG0950|consen 321 ATIEKANSLINSLIEQGRLD-FLGMVVVDELHMIGDKGRGAILE------------------------------------ 363 (1008)
T ss_pred eehHhhHhHHHHHHhcCCcc-ccCcEEEeeeeeeeccccchHHH------------------------------------
Confidence 48899999999988866554 48999999999888877543330
Q ss_pred cccHHHHHHHHHHC-CCCCcEEEEeecCChhh---hccC--------CCeEEEEEEEEEecCCh-hhHHHHHHHHH----
Q psy3145 87 IEEYNKDTEIVVAY-CWSKGTFQSNASMTSFL---FLLR--------PPVLLCLLCFRIRKDTH-LDRKALLAALV---- 149 (396)
Q Consensus 87 ~~~~~~i~~il~~~-~~~~q~ll~SAT~~~~~---~~l~--------~p~~i~~~~~~~~~~~~-~~k~~~l~~ll---- 149 (396)
.-+.+++-.. ....|++.+|||+|+.- .++. .|+.+.- ++.+...-. ..+...+..+-
T Consensus 364 ----~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E-~ik~G~~i~~~~r~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 364 ----LLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKE-YIKPGSLIYESSRNKVLREIANLYS 438 (1008)
T ss_pred ----HHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchh-ccCCCcccccchhhHHHHHhhhhhh
Confidence 1122333322 23367999999999876 3333 2433321 111111000 11222222221
Q ss_pred ---------------hhc--CCCcEEEEeCChHHHHHHHHHHHhc-----------------------------------
Q psy3145 150 ---------------CRT--FKDHTMIFVPTKREAHEMHILLGLL----------------------------------- 177 (396)
Q Consensus 150 ---------------~~~--~~~~~iIF~~t~~~~~~l~~~L~~~----------------------------------- 177 (396)
... .+.++||||++++.|+.++..+...
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 111 1346999999999999988665211
Q ss_pred ---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC----CCChhHHHHHHhhcccCCC
Q psy3145 178 ---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM----PHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 178 ---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~----p~s~~~y~qr~GRagR~g~ 250 (396)
.+.++++|+|++.++|..+...|+.|.+.|++||+.++.|+|+|..+++|-.-. +.+.-.|.|++|||||+|-
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 246789999999999999999999999999999999999999999998887543 2467899999999999985
Q ss_pred C--ceEEEEEcCccHHHHHHHHHHcC
Q psy3145 251 G--GVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 251 ~--g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
. |.+++++.+.+.+.+.++...--
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccc
Confidence 5 99999999999887777665443
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=9.6e-16 Score=161.74 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhc--CCceEEeeCCCC--HHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEe--cCCCC-----
Q psy3145 166 EAHEMHILLGLL--GIKAGELHGNLT--QPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINY--RMPHS----- 234 (396)
Q Consensus 166 ~~~~l~~~L~~~--~~~~~~lhg~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~--~~p~s----- 234 (396)
.++.+++.|+.. +.++..+||++. ..++.++++.|++|+.+|||+|+++++|+|+|++++|+.+ |.+.+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 567788888776 788999999986 4678999999999999999999999999999999999655 44433
Q ss_pred -----hhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHH
Q psy3145 235 -----LEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK 271 (396)
Q Consensus 235 -----~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~ 271 (396)
...|+|++||+||.+..|.+++.....+...++.+.+
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~ 559 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLA 559 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHh
Confidence 3679999999999999999998876666555555443
No 95
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=4.5e-16 Score=163.97 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..|...+...+... .+.|+||||+|+..++.++..|...|+++..+|+ .+.+|+..+.+|..+...|+|||+++||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45777777777433 5789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred ccccC---Ccc-----EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 217 GLDIR---GVK-----TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 217 Gidi~---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
|+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+++|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 554 4599999999999999999999999999999999976653
No 96
>KOG0952|consensus
Probab=99.69 E-value=3.3e-16 Score=163.03 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=155.1
Q ss_pred ccccccccCCCCCCCccchhcccceeEEEeccccccccCCCCCCce-EEeCCcccccccccCCCcccccccceeecccCC
Q psy3145 5 LLKTIEDDEEVPNYSDDSDKEVEGLRVYVETEACPKANLGWYPQTA-IVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSF 83 (396)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~ 83 (396)
+++|-|+=--++.++-.+..++..+++|||||.|.+.+ ..+|.+. ||.
T Consensus 215 iVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVa------------------------------ 263 (1230)
T KOG0952|consen 215 IVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVA------------------------------ 263 (1230)
T ss_pred EEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHH------------------------------
Confidence 34555666678889988999999999999999996655 3444442 111
Q ss_pred ccccccHHHHHHHHHHCCCCCcEEEEeecCChhh---hccCC--------------CeEEEEEEEEEecCChhhHHHHHH
Q psy3145 84 VSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL---FLLRP--------------PVLLCLLCFRIRKDTHLDRKALLA 146 (396)
Q Consensus 84 l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~---~~l~~--------------p~~i~~~~~~~~~~~~~~k~~~l~ 146 (396)
.+............++.+|||+|+-. .+|+- |+.+...++..+..+.......+.
T Consensus 264 --------Rtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 264 --------RTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred --------HHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 11222233445788999999999988 45543 333333444444332222222222
Q ss_pred HHH-----hh-cCCCcEEEEeCChHHHHHHHHHHHhcC-----------------------CceEEeeCCCCHHHHHHHH
Q psy3145 147 ALV-----CR-TFKDHTMIFVPTKREAHEMHILLGLLG-----------------------IKAGELHGNLTQPSRLESL 197 (396)
Q Consensus 147 ~ll-----~~-~~~~~~iIF~~t~~~~~~l~~~L~~~~-----------------------~~~~~lhg~~~~~~r~~~~ 197 (396)
..+ +. ..+.+++|||.++..+.+.|+.|.+.+ ...+.+|+||....|....
T Consensus 336 ~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 222 11 236899999999999999999886531 2467899999999999999
Q ss_pred HHhhcCCceEEEeecccccccccCCccEEEEecCC-----------CChhHHHHHHhhcccCC--CCceEEEEEcCccHH
Q psy3145 198 RKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP-----------HSLEHYIHRVGRTARAG--KGGVSVSMAGEVDRK 264 (396)
Q Consensus 198 ~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p-----------~s~~~y~qr~GRagR~g--~~g~~i~l~~~~e~~ 264 (396)
+.|+.|.++||+||..++.|+|+|+ .+||.-+-+ -+.-+.+|..|||||-. ..|.++++.+.+-..
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 9999999999999999999999995 455543332 24667899999999964 569999887754443
Q ss_pred HHH
Q psy3145 265 LVK 267 (396)
Q Consensus 265 ~~~ 267 (396)
.+.
T Consensus 495 ~Y~ 497 (1230)
T KOG0952|consen 495 HYE 497 (1230)
T ss_pred HHH
Confidence 333
No 97
>KOG0947|consensus
Probab=99.69 E-value=9.5e-16 Score=158.06 Aligned_cols=119 Identities=22% Similarity=0.229 Sum_probs=96.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC---------------------------------------CceEEeeCCCCHHHHH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG---------------------------------------IKAGELHGNLTQPSRL 194 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~---------------------------------------~~~~~lhg~~~~~~r~ 194 (396)
--|+||||-+++.|++.+.+|...+ -.++.+|||+-+--+.
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 4589999999999999999986431 1468899999999999
Q ss_pred HHHHHhhcCCceEEEeecccccccccCCccEEEEecC--------CCChhHHHHHHhhcccCCC--CceEEEEEcCc--c
Q psy3145 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM--------PHSLEHYIHRVGRTARAGK--GGVSVSMAGEV--D 262 (396)
Q Consensus 195 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~--------p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~--e 262 (396)
-+..-|+.|-++||+||..+++|+|+|.-.+|+..=. --.+..|.|++|||||.|- .|+++++.... +
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~ 726 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPS 726 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCC
Confidence 9999999999999999999999999997666664221 1257899999999999995 48888887643 5
Q ss_pred HHHHHHHHHH
Q psy3145 263 RKLVKQVIKN 272 (396)
Q Consensus 263 ~~~~~~i~~~ 272 (396)
...++.+...
T Consensus 727 ~a~l~~li~G 736 (1248)
T KOG0947|consen 727 AATLKRLIMG 736 (1248)
T ss_pred HHHHhhHhcC
Confidence 5555555443
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.69 E-value=5.9e-16 Score=164.76 Aligned_cols=203 Identities=21% Similarity=0.191 Sum_probs=161.7
Q ss_pred CCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hcc
Q psy3145 46 YPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLL 120 (396)
Q Consensus 46 ~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l 120 (396)
...++||++|++++.... .++.+.+-++||..+|... -++-++.+..+.-++.+|||+-|.. ..+
T Consensus 695 ~G~vDIvIGTHrLL~kdv----~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~Gi 764 (1139)
T COG1197 695 EGKVDIVIGTHRLLSKDV----KFKDLGLLIIDEEQRFGVK------HKEKLKELRANVDVLTLSATPIPRTLNMSLSGI 764 (1139)
T ss_pred cCCccEEEechHhhCCCc----EEecCCeEEEechhhcCcc------HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcc
Confidence 346789999999885544 5667777888998888543 2566777778999999999997777 223
Q ss_pred CC-------Ce-EEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCH
Q psy3145 121 RP-------PV-LLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQ 190 (396)
Q Consensus 121 ~~-------p~-~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~ 190 (396)
++ |. +..+..+....++..-|.+++.++. .++++-.-+|..+..+.++..|+.. ..++++.||.|+.
T Consensus 765 RdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~---RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e 841 (1139)
T COG1197 765 RDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELL---RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRE 841 (1139)
T ss_pred hhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHh---cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCH
Confidence 32 21 2223444343344444555566554 3689999999999999999999887 5689999999999
Q ss_pred HHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC-CChhHHHHHHhhcccCCCCceEEEEEcCc
Q psy3145 191 PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP-HSLEHYIHRVGRTARAGKGGVSVSMAGEV 261 (396)
Q Consensus 191 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~i~l~~~~ 261 (396)
.+-+.++..|-+|+.+|||||.+.+.|||||+++++|..+.. .-.++..|-.||+||..+.|+|++++.+.
T Consensus 842 ~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 842 RELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999999999999999999999999999987765 36889999999999999999999998743
No 99
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=3.3e-16 Score=119.61 Aligned_cols=81 Identities=53% Similarity=0.813 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 169 EMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 169 ~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.++..|...++.+..+||++++.+|..+++.|+.|...+|++|++++.|+|+|++++||.++.|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy3145 249 G 249 (396)
Q Consensus 249 g 249 (396)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 100
>KOG0948|consensus
Probab=99.66 E-value=2.5e-16 Score=158.76 Aligned_cols=121 Identities=22% Similarity=0.327 Sum_probs=97.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCC---------------------------------------ceEEeeCCCCHHHHHH
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGI---------------------------------------KAGELHGNLTQPSRLE 195 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~~~~~~r~~ 195 (396)
.|+|||+-+++.|+.+|..+.+..+ .++.+|||+-+--++.
T Consensus 384 ~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~ 463 (1041)
T KOG0948|consen 384 LPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEV 463 (1041)
T ss_pred CceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHH
Confidence 5899999999999999998865422 4588999999999999
Q ss_pred HHHHhhcCCceEEEeecccccccccCCccEEEE----ecC---C-CChhHHHHHHhhcccCCCC--ceEEEEEcCc-cHH
Q psy3145 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVIN----YRM---P-HSLEHYIHRVGRTARAGKG--GVSVSMAGEV-DRK 264 (396)
Q Consensus 196 ~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~----~~~---p-~s~~~y~qr~GRagR~g~~--g~~i~l~~~~-e~~ 264 (396)
+.-.|+.|-+++|.||..++.|+|+|.-.+|+- ||- - -|-..|+|+.|||||.|.. |.||+++++. +..
T Consensus 464 IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~ 543 (1041)
T KOG0948|consen 464 IEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQ 543 (1041)
T ss_pred HHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHH
Confidence 999999999999999999999999997666653 221 1 2567899999999999965 9999999854 555
Q ss_pred HHHHHHHHcCC
Q psy3145 265 LVKQVIKNAKN 275 (396)
Q Consensus 265 ~~~~i~~~~~~ 275 (396)
..+.+.+....
T Consensus 544 ~ak~m~kG~aD 554 (1041)
T KOG0948|consen 544 VAKDMLKGSAD 554 (1041)
T ss_pred HHHHHhcCCCc
Confidence 66666554433
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=3e-15 Score=150.79 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=94.5
Q ss_pred HHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC
Q psy3145 143 ALLAALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR 221 (396)
Q Consensus 143 ~~l~~ll~~~-~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 221 (396)
..+..++... .+.+++||+.+...+..++..+...|. +..+.|..+..+|..+++.|+.|.+++||++.++..|+|+|
T Consensus 271 ~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP 349 (442)
T COG1061 271 AAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIP 349 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCC
Confidence 3344444333 367999999999999999999988887 88999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhhccc
Q psy3145 222 GVKTVINYRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 222 ~v~~VI~~~~p~s~~~y~qr~GRagR 247 (396)
+++++|......|...|+||+||.-|
T Consensus 350 ~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 350 DADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.6e-15 Score=139.03 Aligned_cols=209 Identities=16% Similarity=0.173 Sum_probs=139.4
Q ss_pred CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHH-HHHHHHCCCCCcEEEEeecCChhh------
Q psy3145 45 WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKD-TEIVVAYCWSKGTFQSNASMTSFL------ 117 (396)
Q Consensus 45 f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i-~~il~~~~~~~q~ll~SAT~~~~~------ 117 (396)
|+ .--|+.|+..++.. ...|+.+.+|++|. .-|..+ +.+ ...-+...++..++++|||.|+.+
T Consensus 184 fr-~plvVaTtHQLlrF----k~aFD~liIDEVDA-FP~~~d----~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 184 FR-APLVVATTHQLLRF----KQAFDLLIIDEVDA-FPFSDD----QSLQYAVKKARKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred cc-ccEEEEehHHHHHH----HhhccEEEEecccc-ccccCC----HHHHHHHHHhhcccCceEEEecCChHHHHHHhhh
Confidence 66 33388888887633 33566777777765 112111 122 233344567889999999999877
Q ss_pred ----------hccCCCeEEEEEEEEEecCC---hhhHHH-HHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhc-C-C
Q psy3145 118 ----------FLLRPPVLLCLLCFRIRKDT---HLDRKA-LLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLL-G-I 179 (396)
Q Consensus 118 ----------~~l~~p~~i~~~~~~~~~~~---~~~k~~-~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~-~-~ 179 (396)
.+-++|..+. .|+.+..-. ..+|+. .|...+++ ..+.+++||+++....+.++..|+.. + .
T Consensus 254 g~~~~~klp~RfH~~pLpvP-kf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~ 332 (441)
T COG4098 254 GNLRILKLPARFHGKPLPVP-KFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE 332 (441)
T ss_pred CCeeEeecchhhcCCCCCCC-ceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc
Confidence 1222333222 334332211 111111 23344433 33689999999999999999999543 3 3
Q ss_pred ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE-ecCC-CChhHHHHHHhhcccCCC--CceEE
Q psy3145 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN-YRMP-HSLEHYIHRVGRTARAGK--GGVSV 255 (396)
Q Consensus 180 ~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~-~~~p-~s~~~y~qr~GRagR~g~--~g~~i 255 (396)
.++.+|+. ...|.+.+++|++|++.+||+|.+++||+.+|+|++++. ..-+ .+.++++|.+||+||.-. .|.++
T Consensus 333 ~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 333 TIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred ceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEE
Confidence 56788884 557899999999999999999999999999999997553 3332 578899999999999754 38888
Q ss_pred EEEcCccHHHH
Q psy3145 256 SMAGEVDRKLV 266 (396)
Q Consensus 256 ~l~~~~e~~~~ 266 (396)
.|-......+.
T Consensus 411 FFH~G~skaM~ 421 (441)
T COG4098 411 FFHYGKSKAMK 421 (441)
T ss_pred EEeccchHHHH
Confidence 88665544433
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=3.2e-14 Score=153.70 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC---CceEEEeecc
Q psy3145 139 LDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE---ETDVLIATDV 213 (396)
Q Consensus 139 ~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLvaT~~ 213 (396)
..|+.+|..++... .+.++|||+......+.|..+|...|+....+||+++..+|..+++.|... ..-+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 45778888877644 367999999999999999999999999999999999999999999999753 3457899999
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEE--EEEcCc--cHHHHHHHHHHcCCCCccccCCCCCCCC
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSV--SMAGEV--DRKLVKQVIKNAKNPVKHRIIPPGYPRL 289 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i--~l~~~~--e~~~~~~i~~~~~~~~~~~~~~~~~~~~ 289 (396)
++.|||++.+++||+||.||||....|++||+.|.|+...|. .|++.. |..++....++.. +...++..+-..
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~--Ld~~Vi~~g~~~- 626 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA--LDALVIQQGRLA- 626 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHH--HHHHHHhcCccc-
Confidence 999999999999999999999999999999999999885544 456554 3445544444332 222233322111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy3145 290 KTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQV 337 (396)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 337 (396)
.+..+....+.+++......+- ..-...+.+++++..+++.+...
T Consensus 627 ~~~~~~~~eL~~ll~~ga~~~f---~~~~~~~~~~did~il~~~~~~~ 671 (1033)
T PLN03142 627 EQKTVNKDELLQMVRYGAEMVF---SSKDSTITDEDIDRIIAKGEEAT 671 (1033)
T ss_pred ccccCCHHHHHHHHHhChHHhh---hccCCCCCHHHHHHHHHhcHHHH
Confidence 1122333344444432222222 11122355666777776665433
No 104
>KOG0951|consensus
Probab=99.56 E-value=2.3e-14 Score=151.37 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=126.9
Q ss_pred CCCcEEEEeecCChhh---hccC-------------CCeEEEEEEEEEecCChhhHHHHHHH-----HHhhcCCCcEEEE
Q psy3145 102 WSKGTFQSNASMTSFL---FLLR-------------PPVLLCLLCFRIRKDTHLDRKALLAA-----LVCRTFKDHTMIF 160 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~---~~l~-------------~p~~i~~~~~~~~~~~~~~k~~~l~~-----ll~~~~~~~~iIF 160 (396)
.++..+.+|||+|+-. .+++ +|+.+..+|+.+.......+..+.++ ++....++++|||
T Consensus 473 e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVF 552 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVF 552 (1674)
T ss_pred cCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4788999999999987 2221 24555557777766555555544444 4455667999999
Q ss_pred eCChHHHHHHHHHHHhc-------------------------------------CCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 161 VPTKREAHEMHILLGLL-------------------------------------GIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
+.+++.+-..|+.+++. .+.++.+|+||+..+|..+.+.|.+|
T Consensus 553 VHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g 632 (1674)
T KOG0951|consen 553 VHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG 632 (1674)
T ss_pred EEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC
Confidence 99999988888887621 35779999999999999999999999
Q ss_pred CceEEEeecccccccccCCccEEEE----ec------CCCChhHHHHHHhhcccCCCC--ceEEEEEcCccHHHHHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVIN----YR------MPHSLEHYIHRVGRTARAGKG--GVSVSMAGEVDRKLVKQ 268 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~----~~------~p~s~~~y~qr~GRagR~g~~--g~~i~l~~~~e~~~~~~ 268 (396)
.++++|+|..+++|+|+|.-.++|- || .+.++.+..||.|||||.+.. |..++.....+......
T Consensus 633 ~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 633 HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred ceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHH
Confidence 9999999999999999997666663 44 245899999999999998744 66666655544443333
No 105
>KOG0924|consensus
Probab=99.55 E-value=3.3e-14 Score=142.36 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=119.9
Q ss_pred CCCcEEEEeecCChhh--hccCC-CeEE------EEEEEEEecCChhhHHHHHHHHHhh---cCCCcEEEEeCChHHHHH
Q psy3145 102 WSKGTFQSNASMTSFL--FLLRP-PVLL------CLLCFRIRKDTHLDRKALLAALVCR---TFKDHTMIFVPTKREAHE 169 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~--~~l~~-p~~i------~~~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iIF~~t~~~~~~ 169 (396)
.+..+|.+||||...- .++.+ |..- .+...+...+-+..-...+...+.- ...+.++||.......+.
T Consensus 499 rdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred ccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 4788999999998777 45553 2211 0122222222233344444444432 235789999999887777
Q ss_pred HHHHHHhc----------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec---------
Q psy3145 170 MHILLGLL----------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR--------- 230 (396)
Q Consensus 170 l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~--------- 230 (396)
.+..+... ++.+..+++.|++.-+.+++..-..|.-+++|||++++..+.+|++.+||+.+
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 66665432 57899999999999999999988889999999999999999999999999866
Q ss_pred ---------CCCChhHHHHHHhhcccCCCCceEEEEEcC
Q psy3145 231 ---------MPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 231 ---------~p~s~~~y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
.|-|...-.||.|||||.| +|.|+-++++
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 3678888999999999999 9999999986
No 106
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.55 E-value=5.8e-13 Score=142.02 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=93.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----------------------------CC-------------ceEEeeCCCCHHH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----------------------------GI-------------KAGELHGNLTQPS 192 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----------------------------~~-------------~~~~lhg~~~~~~ 192 (396)
.-++|+|+-+++.|+..+..+... ++ .++++|+||-+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 458999999999999999887521 11 2468999999999
Q ss_pred HHHHHHHhhcCCceEEEeecccccccccCCccEEEE----ec----CCCChhHHHHHHhhcccCCCC--ceEEEEEcCcc
Q psy3145 193 RLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN----YR----MPHSLEHYIHRVGRTARAGKG--GVSVSMAGEVD 262 (396)
Q Consensus 193 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~----~~----~p~s~~~y~qr~GRagR~g~~--g~~i~l~~~~e 262 (396)
|..+.+.|..|-++|++||.+++.|+|+|.-++|+- +| -+-++..|.|..|||||.|.+ |.++++..+..
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 999999999999999999999999999996555542 22 245789999999999999965 88888855332
Q ss_pred --HHHHHHHHHH
Q psy3145 263 --RKLVKQVIKN 272 (396)
Q Consensus 263 --~~~~~~i~~~ 272 (396)
.+....+...
T Consensus 539 ~~~~e~~~l~~~ 550 (1041)
T COG4581 539 SEPSEAAGLASG 550 (1041)
T ss_pred CChHHHHHhhcC
Confidence 3444444433
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.53 E-value=5.1e-14 Score=150.04 Aligned_cols=117 Identities=27% Similarity=0.330 Sum_probs=97.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhh----cCCceEEEeecccccccccCCccEEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK----DEETDVLIATDVAARGLDIRGVKTVIN 228 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gidi~~v~~VI~ 228 (396)
.+.+++|-|||+..|.+++..|+..+.++..+||.+....|.+.++.++ .+...|+|||++.+.|+|+. .+.+|-
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT 517 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT 517 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee
Confidence 3689999999999999999999999888999999999999988887544 56788999999999999994 777776
Q ss_pred ecCCCChhHHHHHHhhcccCC--CCceEEEEEcCccHHHHHHHHHH
Q psy3145 229 YRMPHSLEHYIHRVGRTARAG--KGGVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 229 ~~~p~s~~~y~qr~GRagR~g--~~g~~i~l~~~~e~~~~~~i~~~ 272 (396)
=-.| +.+.+||+||++|.| ..|.++.+.............+.
T Consensus 518 e~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~ 561 (733)
T COG1203 518 ELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEK 561 (733)
T ss_pred cCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhc
Confidence 5444 889999999999999 56888888765554444444443
No 108
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.53 E-value=5e-13 Score=146.84 Aligned_cols=95 Identities=22% Similarity=0.375 Sum_probs=83.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc------CC---ceEEeeCCCCHHHHHHHHHHhhcCCc-eEEEeecccccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL------GI---KAGELHGNLTQPSRLESLRKFKDEET-DVLIATDVAARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~------~~---~~~~lhg~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~v 223 (396)
++++||||.++..|+.+++.|... ++ .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999999887653 22 4566899875 46789999999987 689999999999999999
Q ss_pred cEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 224 KTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 224 ~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
.+||.+..+.|...|+|++||+.|...
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999999999999999753
No 109
>KOG0385|consensus
Probab=99.50 E-value=1.1e-13 Score=140.49 Aligned_cols=145 Identities=18% Similarity=0.269 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC---ceEEEeecc
Q psy3145 139 LDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE---TDVLIATDV 213 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~---~~vLvaT~~ 213 (396)
..|+.+|..||.... +++||||.+.....+-+-.++.-+++...-+.|+++.++|...++.|.... .-+|++|-+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 357788888886554 789999999999999999999999999999999999999999999998654 447899999
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceE--EEEEcCc--cHHHHHHHHHHcCCCCccccCCCC
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS--VSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPG 285 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--i~l~~~~--e~~~~~~i~~~~~~~~~~~~~~~~ 285 (396)
+|.|||+..+++||.||..|||..-+|...||.|.|+...+ +-|+++. |...+++.+.++. +...++..+
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~--Ld~~VIq~g 623 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR--LDKLVIQQG 623 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc--hhhhhhccC
Confidence 99999999999999999999999999999999999987554 4567665 3344444444433 444455444
No 110
>KOG0926|consensus
Probab=99.48 E-value=2.3e-13 Score=138.53 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=86.3
Q ss_pred EEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC------------------CChhHHHHHHh
Q psy3145 182 GELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP------------------HSLEHYIHRVG 243 (396)
Q Consensus 182 ~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p------------------~s~~~y~qr~G 243 (396)
..+++-++.+.+.++++.--.|.--++|||++++..+.||++.+||+.+.- .|..+--||+|
T Consensus 608 LPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAG 687 (1172)
T KOG0926|consen 608 LPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAG 687 (1172)
T ss_pred eehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhcc
Confidence 556666777888888888888888899999999999999999999986532 15566679999
Q ss_pred hcccCCCCceEEEEEcCccHHHHH-HHHHHc-----CCCCccccC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q psy3145 244 RTARAGKGGVSVSMAGEVDRKLVK-QVIKNA-----KNPVKHRII---PPGYPRLKTPSFPPPPLAEIVDKYRAKVEAI 313 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~~~~~-~i~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (396)
||||.| +|.|+-|++.. .+. .++... +.+++...+ .=.++.+.+..||-++....+++-...+..+
T Consensus 688 RAGRtg-pGHcYRLYSSA---Vf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~L 762 (1172)
T KOG0926|consen 688 RAGRTG-PGHCYRLYSSA---VFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKAL 762 (1172)
T ss_pred ccCCCC-CCceeehhhhH---HhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHh
Confidence 999999 99999998731 111 111111 111111000 0124456777787777777776655555444
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=4.5e-12 Score=133.55 Aligned_cols=124 Identities=20% Similarity=0.150 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 138 HLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 138 ~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
...|...+...+.. ..+.|+||||+|+..++.++..|...|+++..+||. +.+|...+.+|..+...|+|||+++|
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAG 489 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAG 489 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccccc
Confidence 34677777777744 567899999999999999999999999999999995 88999999999999999999999999
Q ss_pred cccccCCc--------------------------------------cEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 216 RGLDIRGV--------------------------------------KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 216 ~Gidi~~v--------------------------------------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
||+||+-- =+||-...|.|..---|-.||+||.|.+|.+-.|
T Consensus 490 RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 490 RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 99999732 1899999999999999999999999999999999
Q ss_pred EcCccH
Q psy3145 258 AGEVDR 263 (396)
Q Consensus 258 ~~~~e~ 263 (396)
++-+|.
T Consensus 570 lSleD~ 575 (830)
T PRK12904 570 LSLEDD 575 (830)
T ss_pred EEcCcH
Confidence 986653
No 112
>KOG0920|consensus
Probab=99.38 E-value=2.5e-12 Score=135.79 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=123.9
Q ss_pred HHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------------------EE-------EEEecC---------
Q psy3145 94 TEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------------------LC-------FRIRKD--------- 136 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------------------~~-------~~~~~~--------- 136 (396)
+.++.. .++.+++|||||+.... .++.....+.+ .+ ......
T Consensus 311 k~lL~~-~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (924)
T KOG0920|consen 311 KDLLPR-NPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLK 389 (924)
T ss_pred HHHhhh-CCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccch
Confidence 344443 36899999999999887 55555444444 00 000000
Q ss_pred --ChhhHHHHHHHHH----hhcCCCcEEEEeCChHHHHHHHHHHHhc-------CCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 137 --THLDRKALLAALV----CRTFKDHTMIFVPTKREAHEMHILLGLL-------GIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 137 --~~~~k~~~l~~ll----~~~~~~~~iIF~~t~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
...-..+++..++ .....+.+|||.++......++..|... .+-+..+|+.|+..++..+...--.|
T Consensus 390 ~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g 469 (924)
T KOG0920|consen 390 LWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG 469 (924)
T ss_pred hccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC
Confidence 0011234444443 3334689999999999999999998643 35678999999999999999999999
Q ss_pred CceEEEeecccccccccCCccEEEEecC------------------CCChhHHHHHHhhcccCCCCceEEEEEcCc
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRM------------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~ 261 (396)
.-+|++||++++.+|.|++|-+||+.+. .-|...-.||.|||||.- +|.|+.+++..
T Consensus 470 ~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~ 544 (924)
T KOG0920|consen 470 TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRS 544 (924)
T ss_pred cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechh
Confidence 9999999999999999999999998663 125677789999999997 89999998854
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=2.3e-11 Score=128.60 Aligned_cols=123 Identities=23% Similarity=0.172 Sum_probs=106.7
Q ss_pred hhHHHHHHHHH--hhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALV--CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll--~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..|...+..-+ ....+.|+||||+|+..++.++..|...|+++..+||.+.+.++..+.++|+.|. |+|||+++||
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGR 504 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGR 504 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccC
Confidence 34555554444 2345789999999999999999999999999999999999999999999999995 9999999999
Q ss_pred ccccCC---------------------------------c-----cEEEEecCCCChhHHHHHHhhcccCCCCceEEEEE
Q psy3145 217 GLDIRG---------------------------------V-----KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258 (396)
Q Consensus 217 Gidi~~---------------------------------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~ 258 (396)
|+||.- | =+||-..-+.|..---|-.||+||-|.+|.+.+|+
T Consensus 505 GtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred CcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 999851 1 17888889999999999999999999999999999
Q ss_pred cCccH
Q psy3145 259 GEVDR 263 (396)
Q Consensus 259 ~~~e~ 263 (396)
+-+|.
T Consensus 585 SleD~ 589 (896)
T PRK13104 585 SLEDN 589 (896)
T ss_pred EcCcH
Confidence 86654
No 114
>KOG0384|consensus
Probab=99.36 E-value=1.9e-12 Score=137.10 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=145.6
Q ss_pred HHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC---CceEEEeecccc
Q psy3145 141 RKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE---ETDVLIATDVAA 215 (396)
Q Consensus 141 k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~ 215 (396)
|+.+|..||.+.. +++||||.+.....+-|+++|..+++...-+.|++..+.|..+++.|... ..-+|+||-++|
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 3444555555443 68999999999999999999999999999999999999999999999864 456899999999
Q ss_pred cccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce--EEEEEcCc--cHHHHHHHHHHcCCCCccccCCCC---CCC
Q psy3145 216 RGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV--SVSMAGEV--DRKLVKQVIKNAKNPVKHRIIPPG---YPR 288 (396)
Q Consensus 216 ~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~i~l~~~~--e~~~~~~i~~~~~~~~~~~~~~~~---~~~ 288 (396)
.|||+..+++||.||..|||..-+|...||.|.|+... ++-|++.. |..++.+...++.. ...++... -..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvL--D~aVIQ~m~t~~~~ 841 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVL--DHAVIQRMDTKGKT 841 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhh--HHHHHHhhcccccc
Confidence 99999999999999999999999999999999998754 55678755 44555554444432 12222211 223
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy3145 289 LKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336 (396)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 336 (396)
.++..+...++++++......+-.-+....+...+++++..+.+++..
T Consensus 842 s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~~ 889 (1373)
T KOG0384|consen 842 SKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAETR 889 (1373)
T ss_pred CCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhcccc
Confidence 445567777888888765555543333334445567888888888753
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2.8e-11 Score=127.55 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=105.9
Q ss_pred hHHHHHHHHHh--hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 140 DRKALLAALVC--RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 140 ~k~~~l~~ll~--~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
.|...+..-+. ...+.|+||||+|...++.++..|...|+++..+|+.+++.++..+.++|+.|. |+|||+++|||
T Consensus 433 ~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRG 510 (908)
T PRK13107 433 EKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRG 510 (908)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCC
Confidence 34444443332 234789999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cccCC--------------------------------c-----cEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcC
Q psy3145 218 LDIRG--------------------------------V-----KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 218 idi~~--------------------------------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
+||.= | =+||-...+.|..---|-.|||||-|.+|.+.+|++-
T Consensus 511 TDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 511 TDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred cceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 99861 1 2799999999999999999999999999999999986
Q ss_pred ccH
Q psy3145 261 VDR 263 (396)
Q Consensus 261 ~e~ 263 (396)
+|.
T Consensus 591 ED~ 593 (908)
T PRK13107 591 EDS 593 (908)
T ss_pred CcH
Confidence 654
No 116
>KOG0953|consensus
Probab=99.27 E-value=8.2e-11 Score=116.23 Aligned_cols=137 Identities=23% Similarity=0.394 Sum_probs=106.0
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHHHHHHHHHHhhc--CCceEEEeecccccccccC
Q psy3145 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLRKFKD--EETDVLIATDVAARGLDIR 221 (396)
Q Consensus 145 l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~ 221 (396)
+..-+....++.|||-+ |++..-.+...+...|.. +++++|+++++.|.+--..|.+ ++.+||||||+.|+|+|+
T Consensus 348 ~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL- 425 (700)
T KOG0953|consen 348 ALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL- 425 (700)
T ss_pred hhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-
Confidence 33344566678888755 566677788888877765 9999999999999999999987 899999999999999999
Q ss_pred CccEEEEecC---------CCChhHHHHHHhhcccCCCC---ceEEEEEcCccHHHHHHHHHHcCCCCccccCCC
Q psy3145 222 GVKTVINYRM---------PHSLEHYIHRVGRTARAGKG---GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP 284 (396)
Q Consensus 222 ~v~~VI~~~~---------p~s~~~y~qr~GRagR~g~~---g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~ 284 (396)
+++-||-|++ |-+..+..|-+|||||.|.. |.+.+|. .+|...++++.+.-..++....+.+
T Consensus 426 ~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~~p~epi~~agl~p 499 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILKRPVEPIKNAGLWP 499 (700)
T ss_pred ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHHhCCchHHHhccCCc
Confidence 5888887764 45688899999999999843 7666664 4566667777666555565555544
No 117
>KOG4150|consensus
Probab=99.26 E-value=8.6e-11 Score=116.15 Aligned_cols=174 Identities=17% Similarity=0.203 Sum_probs=126.0
Q ss_pred HHHHHHHHHC-----CCCCcEEEEeecCChhh---hccCCCeEEEE-----------EEEEEecC----ChhhH---H--
Q psy3145 91 NKDTEIVVAY-----CWSKGTFQSNASMTSFL---FLLRPPVLLCL-----------LCFRIRKD----THLDR---K-- 142 (396)
Q Consensus 91 ~~i~~il~~~-----~~~~q~ll~SAT~~~~~---~~l~~p~~i~~-----------~~~~~~~~----~~~~k---~-- 142 (396)
.+++.+++.+ +.+.|++-.|||+.+.+ ..|.+-..+.. .++.+.+. .+..| .
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 4555555554 25789999999998887 22222222221 34444332 11122 2
Q ss_pred --HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc----CC----ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 143 --ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL----GI----KAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 143 --~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.++.+++. .+-++|-||.+++-|+.+....++. |- .+..|.||.+..+|.++...+--|++.-+|||+
T Consensus 514 ~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN 591 (1034)
T KOG4150|consen 514 VSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN 591 (1034)
T ss_pred HHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc
Confidence 23344433 3569999999999999876654432 21 456788999999999999999999999999999
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEc--CccHHHH
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG--EVDRKLV 266 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~--~~e~~~~ 266 (396)
+++.||||.+.+.|++.++|.|...+.|+.|||||..++..++.++. +-|..++
T Consensus 592 ALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 592 ALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred hhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 99999999999999999999999999999999999998877776654 4344433
No 118
>KOG0925|consensus
Probab=99.24 E-value=8.8e-11 Score=114.33 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=114.2
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE------EEEEEecCChhhHHH-HHH---HHHhhcCCCcEEEE
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL------LCFRIRKDTHLDRKA-LLA---ALVCRTFKDHTMIF 160 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~------~~~~~~~~~~~~k~~-~l~---~ll~~~~~~~~iIF 160 (396)
+++++...| +..++.+|||+...- .++.++-.+.+ +.++.... +.+.++ .+. ++......+.+++|
T Consensus 182 lk~v~~~rp-dLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~-erDylEaairtV~qih~~ee~GDilvF 259 (699)
T KOG0925|consen 182 LKEVVRNRP-DLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEP-ERDYLEAAIRTVLQIHMCEEPGDILVF 259 (699)
T ss_pred HHHHHhhCC-CceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCC-ChhHHHHHHHHHHHHHhccCCCCEEEE
Confidence 466666665 899999999997766 55555444433 33444433 223332 232 33333447899999
Q ss_pred eCChHHHHHHHHHHHhc---------CCceEEeeCCCCHHHHHHHHHHhhc---C--CceEEEeecccccccccCCccEE
Q psy3145 161 VPTKREAHEMHILLGLL---------GIKAGELHGNLTQPSRLESLRKFKD---E--ETDVLIATDVAARGLDIRGVKTV 226 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~---g--~~~vLvaT~~~~~Gidi~~v~~V 226 (396)
.....+.+..++.+... .++|..+| +.++..+++.... | .-+|+|+|++++..+.++++.+|
T Consensus 260 LtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~V 335 (699)
T KOG0925|consen 260 LTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFV 335 (699)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEE
Confidence 99999988888877532 25778888 4445555444321 2 24799999999999999999999
Q ss_pred EEecC------------------CCChhHHHHHHhhcccCCCCceEEEEEcC
Q psy3145 227 INYRM------------------PHSLEHYIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 227 I~~~~------------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
|+-++ |-|..+-.||.|||||.. +|+|+.++++
T Consensus 336 IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte 386 (699)
T KOG0925|consen 336 IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTE 386 (699)
T ss_pred ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecH
Confidence 98764 678899999999999986 8999999985
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.2e-08 Score=106.97 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=74.1
Q ss_pred CCceEEeeCCCCHH--HHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC------------CChhHHHHHHh
Q psy3145 178 GIKAGELHGNLTQP--SRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP------------HSLEHYIHRVG 243 (396)
Q Consensus 178 ~~~~~~lhg~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p------------~s~~~y~qr~G 243 (396)
+.++..+.++.+.. .-...+..|.+|+.+|||.|..++.|.|+|++..|...|.. ....-+.|-.|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaG 585 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHh
Confidence 34555666655432 24577999999999999999999999999999987765532 13556789999
Q ss_pred hcccCCCCceEEEEEcCccHHHHHHHHHH
Q psy3145 244 RTARAGKGGVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~~~~~~i~~~ 272 (396)
||||.+.+|.+++-....|...++.+...
T Consensus 586 RAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 586 RAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred hhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 99999999999998877777777776654
No 120
>KOG0391|consensus
Probab=99.01 E-value=2.1e-09 Score=113.47 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC--ceEEEeeccc
Q psy3145 139 LDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE--TDVLIATDVA 214 (396)
Q Consensus 139 ~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 214 (396)
..|+..|.-||... .++++|||+...+..+-|-.+|+-+|+-..-+.|..+-++|...+++|.... ..++++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34666666666544 4789999999999999999999999999999999999999999999998764 3477899999
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce--EEEEEcCccHHHHHHHHHHc
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV--SVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~i~l~~~~e~~~~~~i~~~~ 273 (396)
+.|||+.+.++||.||..||+.--.|.-.|+.|.|+... .+-|+++. .+-.+|.++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~--TIEeniLkka 1397 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER--TIEENILKKA 1397 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc--hHHHHHHhhh
Confidence 999999999999999999999999999999999997644 44456554 3334444433
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=7.9e-08 Score=101.18 Aligned_cols=121 Identities=22% Similarity=0.193 Sum_probs=94.7
Q ss_pred hHHHHHHH-HHh-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC-CceEEEeeccccc
Q psy3145 140 DRKALLAA-LVC-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE-ETDVLIATDVAAR 216 (396)
Q Consensus 140 ~k~~~l~~-ll~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~ 216 (396)
.|...+.. +.. ...+.|+||.|.|...++.++..|...|++...+++. +.+++..+-+ +.| .-.|.|||+.+||
T Consensus 410 ~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNMAGR 486 (925)
T PRK12903 410 AKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIATNMAGR 486 (925)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEecccccC
Confidence 44444443 332 2357899999999999999999999999999998885 3333333322 345 3458899999999
Q ss_pred ccccCCcc--------EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 217 GLDIRGVK--------TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 217 Gidi~~v~--------~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|.||.--. +||....|.|..---|-.||+||.|.+|.+..|++-+|.
T Consensus 487 GTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 487 GTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred CcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 99996322 999999999999999999999999999999999986553
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.79 E-value=5.1e-07 Score=95.80 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=79.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHH---------------------HHHHHHHHhhc-CCce
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQP---------------------SRLESLRKFKD-EETD 206 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~---------------------~r~~~~~~f~~-g~~~ 206 (396)
+++++|||.++..|..+++.|... +.....++|+.+.. ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999988654 24455666654332 22478889976 6889
Q ss_pred EEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccC-C--C-CceEEEEEcC
Q psy3145 207 VLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA-G--K-GGVSVSMAGE 260 (396)
Q Consensus 207 vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~-g--~-~g~~i~l~~~ 260 (396)
+||.++.+..|.|.|.+++++..-.-.+ ..++|.+||+-|. + + .|.++-|++.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 9999999999999999999887765454 4589999999994 3 2 2555555543
No 123
>KOG0392|consensus
Probab=98.76 E-value=6.3e-08 Score=103.40 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHhhc----------------CCCcEEEEeCChHHHHHHHHHHHhcC-CceE--EeeCCCCHHHHHHHHHH
Q psy3145 139 LDRKALLAALVCRT----------------FKDHTMIFVPTKREAHEMHILLGLLG-IKAG--ELHGNLTQPSRLESLRK 199 (396)
Q Consensus 139 ~~k~~~l~~ll~~~----------------~~~~~iIF~~t~~~~~~l~~~L~~~~-~~~~--~lhg~~~~~~r~~~~~~ 199 (396)
..|+..|.+++..- .+++++|||+-+...+-+-+-|-+.. ..+. .+.|+.++..|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 35777888877432 24699999999999999988765543 3444 67899999999999999
Q ss_pred hhcC-CceEE-EeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEE--EEcC
Q psy3145 200 FKDE-ETDVL-IATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS--MAGE 260 (396)
Q Consensus 200 f~~g-~~~vL-vaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~--l~~~ 260 (396)
|.++ .++|| ++|.++|.|+|+.++++||.++-.|||..-+|.+.||.|.|++..+-+ |++.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9998 78876 678899999999999999999999999999999999999998766544 4543
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.75 E-value=1e-07 Score=100.60 Aligned_cols=85 Identities=33% Similarity=0.534 Sum_probs=69.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeCC---hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec----cc
Q psy3145 142 KALLAALVCRTFKDHTMIFVPT---KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD----VA 214 (396)
Q Consensus 142 ~~~l~~ll~~~~~~~~iIF~~t---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~----~~ 214 (396)
...+..+++... .-+|||++. +..+++++++|+..|+++..+|++ ..+.++.|..|++++||+.. ++
T Consensus 324 ~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~l 397 (1187)
T COG1110 324 LEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVL 397 (1187)
T ss_pred HHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccce
Confidence 344445554444 368999999 999999999999999999999983 37889999999999998764 78
Q ss_pred ccccccC-CccEEEEecCC
Q psy3145 215 ARGLDIR-GVKTVINYRMP 232 (396)
Q Consensus 215 ~~Gidi~-~v~~VI~~~~p 232 (396)
-||||+| -++++|-|+.|
T Consensus 398 VRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 398 VRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecCCchhheeEEEEecCC
Confidence 8999999 56788888865
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.73 E-value=5.4e-08 Score=101.04 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=79.1
Q ss_pred HHHHHHhh--cC--CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhc-C-CceEEEeec
Q psy3145 144 LLAALVCR--TF--KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKD-E-ETDVLIATD 212 (396)
Q Consensus 144 ~l~~ll~~--~~--~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~-g-~~~vLvaT~ 212 (396)
.+.+++.. .. -+|+||||.+..+|+.+...|... |--+..+.|+-.+. ...++.|.. . --+|.|+.+
T Consensus 412 ~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehh
Confidence 34445544 22 369999999999999999999765 33456677754333 445666654 2 245888899
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccC
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~ 248 (396)
.+..|||+|.|..++.+..-.|...|.|++||+-|.
T Consensus 490 lL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 490 LLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999899999999999998774
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=2e-07 Score=96.78 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=94.0
Q ss_pred hHHHHHHHHH-h-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC-ceEEEeeccccc
Q psy3145 140 DRKALLAALV-C-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE-TDVLIATDVAAR 216 (396)
Q Consensus 140 ~k~~~l~~ll-~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~ 216 (396)
.|...+..-+ . ...+.|+||.|.|...++.++..|...|++...+++.-...| .+++.+ .|+ -.|.|||+.+||
T Consensus 411 ~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGR 487 (764)
T PRK12326 411 EKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGR 487 (764)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCC
Confidence 3444444333 2 235789999999999999999999999999999988633333 223322 233 348899999999
Q ss_pred ccccCC----------c-----cEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 217 GLDIRG----------V-----KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 217 Gidi~~----------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|.||.- | =+||-...|.|..--.|-.||+||.|.+|.+.+|++-+|.
T Consensus 488 GTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 488 GTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred ccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 999861 2 2899999999999999999999999999999999986654
No 127
>KOG0387|consensus
Probab=98.72 E-value=7.2e-08 Score=99.22 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHH-hcCCceEEeeCCCCHHHHHHHHHHhhcCCce--EEEeecc
Q psy3145 139 LDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLG-LLGIKAGELHGNLTQPSRLESLRKFKDEETD--VLIATDV 213 (396)
Q Consensus 139 ~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vLvaT~~ 213 (396)
..|...+..++.. ..+.++|+|..|+...+-+-..|. ..|+...-+.|..+-..|..++++|..+..- +|++|.+
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 4588888888753 346799999999999999999998 6899999999999999999999999987643 6799999
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEE--EEcC---ccHHHHHHHHHH
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVS--MAGE---VDRKLVKQVIKN 272 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~--l~~~---~e~~~~~~i~~~ 272 (396)
.|.|+|+.+++-||.||..|||..-.|..-||-|.|+...+++ |++. +|.-+.+++.+.
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754443 4553 344455555553
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=9.2e-07 Score=94.24 Aligned_cols=121 Identities=19% Similarity=0.151 Sum_probs=93.4
Q ss_pred hHHHHHH-HHHhh-cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC-ceEEEeeccccc
Q psy3145 140 DRKALLA-ALVCR-TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE-TDVLIATDVAAR 216 (396)
Q Consensus 140 ~k~~~l~-~ll~~-~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~ 216 (396)
.|...+. .+... ..+.|+||-|.|....+.++..|...|++...++..-...|-.-+-+ .|+ -.|.|||+.+||
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGR 628 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccC
Confidence 4444443 33332 34789999999999999999999999999988888533222222222 233 458999999999
Q ss_pred ccccC---Ccc-----EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 217 GLDIR---GVK-----TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 217 Gidi~---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|.||. .|. +||....|.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 99984 222 899999999999999999999999999999999986654
No 129
>KOG0390|consensus
Probab=98.66 E-value=2.3e-07 Score=97.22 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhcC---CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce---EEEeec
Q psy3145 139 LDRKALLAALVCRTF---KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD---VLIATD 212 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~---~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 212 (396)
..|+-.|..++.... ..++.+-.|.+...+.+...++-.|+.+..+||.|+..+|..+++.|.+.... +|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 345566666653222 23455555666666666666666799999999999999999999999875433 667888
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
+.|.||++-+.+.||.||.+|||+.-.|.++|+-|.|+.-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999998776654
No 130
>KOG0388|consensus
Probab=98.65 E-value=8.6e-08 Score=97.40 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce-EEEeeccc
Q psy3145 138 HLDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD-VLIATDVA 214 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~-vLvaT~~~ 214 (396)
+..|+..|..||.+.. ++++|+|+...+..+.+-++|.-+|+...-+.|+.....|..++..|+..++- +|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 3457777777775544 78999999999999999999999999999999999999999999999986654 67999999
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce--EEEEEcC
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV--SVSMAGE 260 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~i~l~~~ 260 (396)
|.|||+...++||.||..|+|..-.|...||.|.|+... ++-+++.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999999999999999999997644 4445543
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.60 E-value=1.1e-06 Score=94.56 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=69.1
Q ss_pred EEEEeCChHHHHHHHHHHHhc----C--CceEEeeCCCCHHHHHHHHHHh----------------------hc----CC
Q psy3145 157 TMIFVPTKREAHEMHILLGLL----G--IKAGELHGNLTQPSRLESLRKF----------------------KD----EE 204 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~----~--~~~~~lhg~~~~~~r~~~~~~f----------------------~~----g~ 204 (396)
.+|=+++.+.+-.++..|... + +.+.+||+..+...|..+.+.+ ++ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477788888887888777544 2 4578899998777776655442 12 35
Q ss_pred ceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC
Q psy3145 205 TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251 (396)
Q Consensus 205 ~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 251 (396)
..|+|+|++.+.|+|+ +.+.+|- -|.+..+.+||+||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 6799999999999998 4565553 477799999999999998854
No 132
>KOG0389|consensus
Probab=98.58 E-value=3.5e-07 Score=94.20 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC-c-eEEEeeccc
Q psy3145 139 LDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE-T-DVLIATDVA 214 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~-~vLvaT~~~ 214 (396)
..|...|..+|.... +.+++||..-....+-|-..|...+++..-+.|...-..|+.+++.|...+ + -+|++|.++
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 457788888886543 689999999999999999999999999999999999999999999998765 3 368999999
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCc--eEEEEEcCcc
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGG--VSVSMAGEVD 262 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g--~~i~l~~~~e 262 (396)
|-|||+..+++||.+|+..+|-.-.|.-.||.|.|+.. .++.|++...
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999999999999999999999764 4556677653
No 133
>KOG1000|consensus
Probab=98.58 E-value=3.9e-07 Score=89.47 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=101.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC-ceE-EEeecccccccccCCccEEEEec
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE-TDV-LIATDVAARGLDIRGVKTVINYR 230 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~Gidi~~v~~VI~~~ 230 (396)
.+.+.+||+.-....+.+...+.++++...-+.|..++.+|....+.|+..+ +.| +++-.+++.|+++...+.|+...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 4679999999999999999999999999999999999999999999998654 443 56778899999999999999999
Q ss_pred CCCChhHHHHHHhhcccCCCCceEEE--EEcC--ccHHHHHHHHHHc
Q psy3145 231 MPHSLEHYIHRVGRTARAGKGGVSVS--MAGE--VDRKLVKQVIKNA 273 (396)
Q Consensus 231 ~p~s~~~y~qr~GRagR~g~~g~~i~--l~~~--~e~~~~~~i~~~~ 273 (396)
+|||+.-++|.-.|+.|.|+...+.+ |+.. .|...+..+.+++
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999999998855443 3443 2445566665554
No 134
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=2e-06 Score=92.06 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=94.8
Q ss_pred hHHHHHHHHH-h-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 140 DRKALLAALV-C-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 140 ~k~~~l~~ll-~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
.|...+..-+ . ...+.|+||-|.|....+.++..|...|++...+++.....|-.-+-++=+.| .|-|||+.+|||
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCC
Confidence 4554444333 2 23478999999999999999999999999988887764444433333333333 488999999999
Q ss_pred cccC---Cc-----cEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 218 LDIR---GV-----KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 218 idi~---~v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
.||. .| =+||-...|.|..---|-.||+||.|.+|.+.+|++-+|.
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9995 22 3899999999999999999999999999999999986553
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.54 E-value=8.1e-07 Score=96.95 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC--CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCcc--EEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLG--IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVK--TVIN 228 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~--~VI~ 228 (396)
.+++++||++|.+..+.++..|.... .....+..+.. ..|.+++++|++|+..||+||+.+++|||+|+.. +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 45799999999999999999997521 12223333333 5788999999999999999999999999999776 5676
Q ss_pred ecCCCC------------------------------hhHHHHHHhhcccCCCCceEEEEEcCc--cHHHHHHHHHHc
Q psy3145 229 YRMPHS------------------------------LEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNA 273 (396)
Q Consensus 229 ~~~p~s------------------------------~~~y~qr~GRagR~g~~g~~i~l~~~~--e~~~~~~i~~~~ 273 (396)
..+|.. ...+.|.+||.=|.....-++++++.. ...+-+.+.+..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 776631 133558899998887553344444432 233334444444
No 136
>KOG0386|consensus
Probab=98.53 E-value=3.5e-07 Score=96.33 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC---ceEEEeecc
Q psy3145 139 LDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE---TDVLIATDV 213 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~---~~vLvaT~~ 213 (396)
..|+.+|..++.+.. +++++.||.......-+-.+|.-.+++..-+.|....++|-..++.|..-. ..+|.+|.+
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 458888888886554 789999999999999999999999999999999999999999999998754 347899999
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHH--HcCCCCccccCCC
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIK--NAKNPVKHRIIPP 284 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~--~~~~~~~~~~~~~ 284 (396)
.+.|+|+..+++||.||..|++....|+..||.|.|+...+-++....-......+.. .++..+..+.+..
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 9999999999999999999999999999999999998766555533222222333322 2344455444443
No 137
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.53 E-value=4.1e-06 Score=83.34 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=152.9
Q ss_pred ccchhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHH-
Q psy3145 20 DDSDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVV- 98 (396)
Q Consensus 20 ~~~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~- 98 (396)
..+...+..+.++|||.||.+.-+.|.+-..|+...+..-.... + .+|..--..-+.
T Consensus 153 ~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~------------------~----~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 153 KRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH------------------D----TDFSRVRPWYLDG 210 (442)
T ss_pred ccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC------------------C----CCHHHHHHHHHcC
Confidence 34555677899999999999766666554433322222111100 0 011110011111
Q ss_pred HCCCCCcEEEEeecCChhh-----hccCC---------CeE----EE-E------EEEEEecCC----hhhHHHHH----
Q psy3145 99 AYCWSKGTFQSNASMTSFL-----FLLRP---------PVL----LC-L------LCFRIRKDT----HLDRKALL---- 145 (396)
Q Consensus 99 ~~~~~~q~ll~SAT~~~~~-----~~l~~---------p~~----i~-~------~~~~~~~~~----~~~k~~~l---- 145 (396)
....-+|+|++|+..++.+ ....| +.. +. + .|..+.... ...+....
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 1123589999999999988 11111 111 10 0 344443322 23344333
Q ss_pred -HHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc--ccccccCC
Q psy3145 146 -AALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA--ARGLDIRG 222 (396)
Q Consensus 146 -~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~--~~Gidi~~ 222 (396)
..+......+.+|||++|--.--++..+|++.++..+.+|--.++.+-..+-..|..|+.++|+.|.=+ =+=..+.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 233323445789999999999999999999999999999999999999999999999999999999844 45677899
Q ss_pred ccEEEEecCCCChhHHHHHHhhcccCCC------CceEEEEEcCccHHHHHHHH
Q psy3145 223 VKTVINYRMPHSLEHYIHRVGRTARAGK------GGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 223 v~~VI~~~~p~s~~~y~qr~GRagR~g~------~g~~i~l~~~~e~~~~~~i~ 270 (396)
++.||-|++|..+.-|-..++-.+.... .+.|.++++..|.-.++.|.
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999999999999988888866554443 57899999998887777664
No 138
>KOG1123|consensus
Probab=98.51 E-value=2.2e-06 Score=84.42 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=83.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc-CCceEEEeecccccccccCCccEEEEecC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD-EETDVLIATDVAARGLDIRGVKTVINYRM 231 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~v~~VI~~~~ 231 (396)
.+.++|||....-...+.+..|. --+++|..+|.+|.++++.|+- ..++.+.-+.++...+|+|..++.|+...
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISS 616 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISS 616 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcc
Confidence 47899999998877777766663 3468999999999999999985 46888888999999999999999998775
Q ss_pred C-CChhHHHHHHhhcccCCCC---c---eEEEEEcCcc
Q psy3145 232 P-HSLEHYIHRVGRTARAGKG---G---VSVSMAGEVD 262 (396)
Q Consensus 232 p-~s~~~y~qr~GRagR~g~~---g---~~i~l~~~~e 262 (396)
- .|..+=.||.||.-|+.+. + .-+++++.+.
T Consensus 617 H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 617 HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 4 5777888999999887532 3 3445555543
No 139
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.48 E-value=1.7e-06 Score=94.68 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=102.5
Q ss_pred hHHHHHHHHH-hh--cCCC--cEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC--CceEEEeec
Q psy3145 140 DRKALLAALV-CR--TFKD--HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE--ETDVLIATD 212 (396)
Q Consensus 140 ~k~~~l~~ll-~~--~~~~--~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~ 212 (396)
.|...+..++ .. ..+. +++||++.....+-+...|...++....++|+++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4666666666 22 2245 899999999999999999999998999999999999999999999986 445678888
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
+++.|+|+...++||.||..|++....|...|+.|.|+...+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999988665544
No 140
>KOG0949|consensus
Probab=98.47 E-value=3.5e-07 Score=96.04 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=73.3
Q ss_pred ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec-CCCChhHHHHHHhhcccCCCC--ceEEE
Q psy3145 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR-MPHSLEHYIHRVGRTARAGKG--GVSVS 256 (396)
Q Consensus 180 ~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~-~p~s~~~y~qr~GRagR~g~~--g~~i~ 256 (396)
.++++|+||+..+|..+.--|+.|...||+||..++.|||+|.-.+|+--| +--++-.|-|++|||||.|-. |.++.
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 458899999999999999999999999999999999999999555555444 446889999999999999965 77766
Q ss_pred EEcCccHHHHHHHHHHc
Q psy3145 257 MAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 257 l~~~~e~~~~~~i~~~~ 273 (396)
+--|. ..+.++....
T Consensus 1044 mgiP~--~kv~rLlts~ 1058 (1330)
T KOG0949|consen 1044 MGIPR--QKVQRLLTSL 1058 (1330)
T ss_pred EeCcH--HHHHHHHHHh
Confidence 64442 3345554443
No 141
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=1.9e-06 Score=91.74 Aligned_cols=121 Identities=22% Similarity=0.193 Sum_probs=92.8
Q ss_pred hHHHHHHHHHh--hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC-CceEEEeeccccc
Q psy3145 140 DRKALLAALVC--RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE-ETDVLIATDVAAR 216 (396)
Q Consensus 140 ~k~~~l~~ll~--~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~ 216 (396)
.|...+..-+. ...+.|+||-|.|....+.++..|...|++...++..-...|-. ++. +.| .-.|.|||+.+||
T Consensus 433 eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGR 509 (913)
T PRK13103 433 EKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGR 509 (913)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCC
Confidence 34444443332 33478999999999999999999999999887777753333222 222 234 3458999999999
Q ss_pred ccccC--------------------------------Ccc-----EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 217 GLDIR--------------------------------GVK-----TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 217 Gidi~--------------------------------~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
|.||. .|. +||-...|.|..---|-.|||||-|.+|.+-+|++
T Consensus 510 GTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 589 (913)
T PRK13103 510 GTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLS 589 (913)
T ss_pred CCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 99994 122 89999999999999999999999999999999998
Q ss_pred CccH
Q psy3145 260 EVDR 263 (396)
Q Consensus 260 ~~e~ 263 (396)
-+|.
T Consensus 590 lED~ 593 (913)
T PRK13103 590 LEDS 593 (913)
T ss_pred cCcH
Confidence 6553
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.24 E-value=6e-05 Score=80.18 Aligned_cols=68 Identities=22% Similarity=0.202 Sum_probs=52.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHH-HHHHHHhhcCC-ceEEEeecccccccccC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR-LESLRKFKDEE-TDVLIATDVAARGLDIR 221 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r-~~~~~~f~~g~-~~vLvaT~~~~~Gidi~ 221 (396)
..+.|+||-|.|....+.++..|...|++...+++.-.+.++ .+++.. .|+ -.|.|||+.+|||.||.
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 347899999999999999999999999999999885322222 233332 333 45889999999999983
No 143
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.18 E-value=9.8e-06 Score=70.98 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=72.8
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCC--ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec--ccccccccCC--ccE
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGI--KAGELHGNLTQPSRLESLRKFKDEETDVLIATD--VAARGLDIRG--VKT 225 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gidi~~--v~~ 225 (396)
..++.++||++|.+..+.+...+...+. ....+.- +...+..+++.|+.++-.+|+|+. .+..|||+|+ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3458999999999999999999976542 1122222 356788999999999999999999 9999999995 778
Q ss_pred EEEecCCC----Ch--------------------------hHHHHHHhhcccCCCCceEEEEEcC
Q psy3145 226 VINYRMPH----SL--------------------------EHYIHRVGRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 226 VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~g~~i~l~~~ 260 (396)
||...+|. ++ ....|.+||+=|..+.--++++++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99999883 11 1234889999898866444444443
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.15 E-value=7e-05 Score=82.52 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCc--cEEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI--KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGV--KTVIN 228 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v--~~VI~ 228 (396)
.+++++||++|.+..+.++..|..... ....+.=+++...|.++++.|+.++-.||++|..+.+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999975432 12222223444567899999999888899999999999999964 78888
Q ss_pred ecCCCC------------------------------hhHHHHHHhhcccCCCCceEEEEEcCc--cHHHHHHHHHHc
Q psy3145 229 YRMPHS------------------------------LEHYIHRVGRTARAGKGGVSVSMAGEV--DRKLVKQVIKNA 273 (396)
Q Consensus 229 ~~~p~s------------------------------~~~y~qr~GRagR~g~~g~~i~l~~~~--e~~~~~~i~~~~ 273 (396)
..+|.. ...+.|-+||.=|..+.--++++++.. ...+-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 777631 223468889988887553344444432 334445555554
No 145
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.12 E-value=0.00014 Score=78.90 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=83.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC--CccEEEEec
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR--GVKTVINYR 230 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~--~v~~VI~~~ 230 (396)
.+++++|+++|.+..+.++..|......+ ...|.-. .+..++++|+.++-.||++|..+.+|+|+| +...||...
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 46899999999999999999997665444 4445322 245689999998889999999999999997 355667666
Q ss_pred CCC------------------------------ChhHHHHHHhhcccCCCC-ceEEEEEcCc--cHHHHHHHHHHcC
Q psy3145 231 MPH------------------------------SLEHYIHRVGRTARAGKG-GVSVSMAGEV--DRKLVKQVIKNAK 274 (396)
Q Consensus 231 ~p~------------------------------s~~~y~qr~GRagR~g~~-g~~i~l~~~~--e~~~~~~i~~~~~ 274 (396)
+|. -...+.|-+||.=|.... |.+++ +++. ...+-+.+.+.+.
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i-lD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI-LDRRILTKSYGKQILASLA 798 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE-ECCcccccHHHHHHHHhCC
Confidence 652 123456889998887754 65444 4432 3344556655554
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.05 E-value=3.6e-05 Score=81.91 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHHHHHHHHHHhhcCCc-eEEEeecccccccccC
Q psy3145 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLRKFKDEET-DVLIATDVAARGLDIR 221 (396)
Q Consensus 144 ~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~ 221 (396)
.+..++.. .+++++||++|.+..+.+++.+...... ....+|.- .+...+++|+.+.- .++|+|..+++|||+|
T Consensus 470 ~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 34444433 3458999999999999999999876652 34455543 34488889887655 8999999999999998
Q ss_pred Cc--cEEEEecCCC------------------------------ChhHHHHHHhhcccCCCC-ceEEEE
Q psy3145 222 GV--KTVINYRMPH------------------------------SLEHYIHRVGRTARAGKG-GVSVSM 257 (396)
Q Consensus 222 ~v--~~VI~~~~p~------------------------------s~~~y~qr~GRagR~g~~-g~~i~l 257 (396)
+- ++||...+|. ......|.+||.=|.-.. |.++++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 55 6788877763 245567999999886544 555444
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.03 E-value=0.00024 Score=75.91 Aligned_cols=116 Identities=24% Similarity=0.363 Sum_probs=79.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhh----cCCceEEEeecccccccccCC--ccE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFK----DEETDVLIATDVAARGLDIRG--VKT 225 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gidi~~--v~~ 225 (396)
.++.++||++|.+..+.++..|... +.. ...+|.. .|..+++.|+ .|+-.||++|..+..|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3456899999999999999998643 333 3456642 4677887776 467789999999999999986 789
Q ss_pred EEEecCCC----Ch--------------------------hHHHHHHhhcccCCCC-ceEEEEEcCc--cHHHHHHHHHH
Q psy3145 226 VINYRMPH----SL--------------------------EHYIHRVGRTARAGKG-GVSVSMAGEV--DRKLVKQVIKN 272 (396)
Q Consensus 226 VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~-g~~i~l~~~~--e~~~~~~i~~~ 272 (396)
||...+|. ++ ..+.|-+||.=|.... |. ++++++. ...+-+.+.+.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~-i~ilD~R~~~~~Yg~~~l~s 687 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR-VTILDRRLLTKRYGKRLLDA 687 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE-EEEEcccccchhHHHHHHHh
Confidence 99888763 11 1244788998887654 54 4444432 23344555555
Q ss_pred c
Q psy3145 273 A 273 (396)
Q Consensus 273 ~ 273 (396)
+
T Consensus 688 L 688 (697)
T PRK11747 688 L 688 (697)
T ss_pred C
Confidence 4
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=0.00032 Score=74.81 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=57.6
Q ss_pred hHHHHHH-HHHh-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHH-HHHHHHhhcCC-ceEEEeecccc
Q psy3145 140 DRKALLA-ALVC-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR-LESLRKFKDEE-TDVLIATDVAA 215 (396)
Q Consensus 140 ~k~~~l~-~ll~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r-~~~~~~f~~g~-~~vLvaT~~~~ 215 (396)
.|...+. ++.. ...+.|+||-|.|.+..+.++..|...|++...++..-...++ .+++.. .|+ -.|-|||+.+|
T Consensus 423 ~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAG 500 (939)
T PRK12902 423 AKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAG 500 (939)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCC
Confidence 4544444 3333 2357899999999999999999999999999999886222222 333332 343 34889999999
Q ss_pred cccccC
Q psy3145 216 RGLDIR 221 (396)
Q Consensus 216 ~Gidi~ 221 (396)
||.||.
T Consensus 501 RGTDIk 506 (939)
T PRK12902 501 RGTDII 506 (939)
T ss_pred CCcCEe
Confidence 999984
No 149
>KOG1002|consensus
Probab=97.95 E-value=6.7e-05 Score=74.13 Aligned_cols=121 Identities=16% Similarity=0.178 Sum_probs=101.5
Q ss_pred HHHHHHHHH----hhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC-Cce-EEEeeccc
Q psy3145 141 RKALLAALV----CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE-ETD-VLIATDVA 214 (396)
Q Consensus 141 k~~~l~~ll----~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~ 214 (396)
|.+.|.+-+ .+...-+.|||.+-....+.+.-.|++.|+.|.-+-|+|++..|...++.|++. .++ +|++-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 455554433 233345889999999999999999999999999999999999999999999975 344 56888899
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC--ceEEEEEcCc
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG--GVSVSMAGEV 261 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--g~~i~l~~~~ 261 (396)
|..+|+...++|+..|.-|++.--+|...|..|.|+. -+++.|+-+.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999999999999999999999964 6677777654
No 150
>KOG1015|consensus
Probab=97.94 E-value=4.1e-05 Score=80.65 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhc----------------------CCceEEeeCCCCHHHHH
Q psy3145 139 LDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLL----------------------GIKAGELHGNLTQPSRL 194 (396)
Q Consensus 139 ~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~r~ 194 (396)
..|+-+|..+|.. ..+.+.|||.++....+.+-.+|... |....-+.|..+..+|.
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 3567777777743 34789999999999988888877421 44556788999999999
Q ss_pred HHHHHhhcCC---c-eEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 195 ESLRKFKDEE---T-DVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 195 ~~~~~f~~g~---~-~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
...+.|.+-. . -+||+|-+.+.|||+-.++-||.||..|||.--.|-+=|+-|.|+...|+++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998643 2 2799999999999999999999999999999999999999999988776654
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=0.00062 Score=73.08 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=74.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-------ceEEeeCCCCHHHHHHHHHHhhc----CCceEEEee--cccccccc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-------KAGELHGNLTQPSRLESLRKFKD----EETDVLIAT--DVAARGLD 219 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gid 219 (396)
.++.++||++|....+.++..+...|. +..+.-+. ...++..+++.|+. |.-.||+|+ ..+++|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 367899999999999999998876542 12222221 22577889999964 455699998 78999999
Q ss_pred cCC--ccEEEEecCCC-Ch------------------------------hHHHHHHhhcccCCCCceEEEEEc
Q psy3145 220 IRG--VKTVINYRMPH-SL------------------------------EHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 220 i~~--v~~VI~~~~p~-s~------------------------------~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
+++ +++||..++|. ++ ....|.+||+=|...+--++++++
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 986 68999999885 11 223488889888875533444444
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.73 E-value=0.0014 Score=69.33 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHhhcCCceEEEeecccccccccCCccEEEEecC------CC------ChhHHHHHHhhcccCCCCceEEEEEcCcc
Q psy3145 195 ESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM------PH------SLEHYIHRVGRTARAGKGGVSVSMAGEVD 262 (396)
Q Consensus 195 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~------p~------s~~~y~qr~GRagR~g~~g~~i~l~~~~e 262 (396)
.+++.|. ++.+|||+|..++.-+. +++..|+..|. |. ....+.|-+||+||.+..|.+++.. ..+
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~ 539 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESS 539 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCC
Confidence 4677776 58999999983222222 46677766553 21 3455679999999999999999875 444
Q ss_pred HHHHHHHHH
Q psy3145 263 RKLVKQVIK 271 (396)
Q Consensus 263 ~~~~~~i~~ 271 (396)
...++.+.+
T Consensus 540 ~~~~~~l~~ 548 (665)
T PRK14873 540 LPTVQALIR 548 (665)
T ss_pred CHHHHHHHh
Confidence 455555543
No 153
>KOG0951|consensus
Probab=97.70 E-value=0.00099 Score=72.56 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=125.1
Q ss_pred hcccceeEEEeccccccccCCC-CCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGW-YPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf-~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
...|.+++.|.||+|.++ |+ .+.+.+++. ++-|.+++-+
T Consensus 1249 q~iQ~v~l~i~d~lh~ig--g~~g~v~evi~S--------------------------------------~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1249 QSIQQVDLFIVDELHLIG--GVYGAVYEVICS--------------------------------------MRYIASQLEK 1288 (1674)
T ss_pred hhhhhcceEeeehhhhhc--ccCCceEEEEee--------------------------------------HHHHHHHHHh
Confidence 467789999999999887 54 444444432 2344445555
Q ss_pred CCcEEEEeecCChhh---------------hccCCCeEEEEEEEEEecCChhhHHH----HHHHHHh-hcCCCcEEEEeC
Q psy3145 103 SKGTFQSNASMTSFL---------------FLLRPPVLLCLLCFRIRKDTHLDRKA----LLAALVC-RTFKDHTMIFVP 162 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~---------------~~l~~p~~i~~~~~~~~~~~~~~k~~----~l~~ll~-~~~~~~~iIF~~ 162 (396)
+..++.+|..+.+.- ..--.|..+.++-+.+..... .-.+ .+..+.. ...+++.+||++
T Consensus 1289 ~ir~v~ls~~lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~-~~~am~~~~~~ai~~~a~~~k~~~vf~p 1367 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFES-RMLAMTKPTYTAIVRHAGNRKPAIVFLP 1367 (1674)
T ss_pred heeEEEeehhhccchhhccccccceeecCcccCCCceeEEEEEeccchhHH-HHHHhhhhHHHHHHHHhcCCCCeEEEec
Confidence 566666666555544 111134555444333322111 1111 1112222 224679999999
Q ss_pred ChHHHHHHHHHHHhc----------------------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 163 TKREAHEMHILLGLL----------------------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 163 t~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
+++.|..++..|-.. .++...=|-+++.....-+-..|..|.+.|+|...- ..|+-.
T Consensus 1368 ~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~ 1446 (1674)
T KOG0951|consen 1368 TRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKL 1446 (1674)
T ss_pred cchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccc
Confidence 999998887654211 122233388899999899999999999999988765 667655
Q ss_pred CCccEEEE-----ec------CCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHH
Q psy3145 221 RGVKTVIN-----YR------MPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQV 269 (396)
Q Consensus 221 ~~v~~VI~-----~~------~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i 269 (396)
. ...||- || .+-+.....|++|+|.| .|.|++++.......++++
T Consensus 1447 ~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1447 K-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred c-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 3 334443 33 34568899999999987 5789999987777666654
No 154
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.65 E-value=3.1e-05 Score=69.65 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=44.8
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
..+.+++++|+||||.+.+.++ ...+..+++.++.+
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~--------------------------------------------~~~~~~~~~~l~~~ 174 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGF--------------------------------------------EDQIREILKLLPKD 174 (203)
T ss_pred CChhhCCEEEEeChHHhhccCh--------------------------------------------HHHHHHHHHhCCcc
Confidence 3456788899999997665443 34557778888889
Q ss_pred CcEEEEeecCChhh-----hccCCCeEE
Q psy3145 104 KGTFQSNASMTSFL-----FLLRPPVLL 126 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~~p~~i 126 (396)
+|++++|||+++.+ .++++|..+
T Consensus 175 ~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 175 RQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999887 566677654
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.46 E-value=0.0017 Score=68.72 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=76.0
Q ss_pred HHHHHHhhcC-CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCC
Q psy3145 144 LLAALVCRTF-KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRG 222 (396)
Q Consensus 144 ~l~~ll~~~~-~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 222 (396)
....|+.... +.++-||++|.+.++.+++.....+.++..++|.-+.. .+ +. =++.+|++=|++...|+++..
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccch
Confidence 3344443333 45677899999999999999988888999888865544 22 22 256899999999999999863
Q ss_pred c--cEEEEecCC----CChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 223 V--KTVINYRMP----HSLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 223 v--~~VI~~~~p----~s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
. +-|+-|=-| .+..+.+|++||.-... ....+++++
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 3 444444223 35667899999986555 455555544
No 156
>KOG0921|consensus
Probab=97.40 E-value=0.0002 Score=75.33 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=98.7
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhc-------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCc
Q psy3145 151 RTFKDHTMIFVPTKREAHEMHILLGLL-------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGV 223 (396)
Q Consensus 151 ~~~~~~~iIF~~t~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v 223 (396)
....+-+++|.......-.|..+|... .+.+...|+.+...+..++.+....|..+++++|+++...+.+.++
T Consensus 640 ~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~ 719 (1282)
T KOG0921|consen 640 RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDV 719 (1282)
T ss_pred cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecce
Confidence 334578999999999988888887543 3578889999998999999999999999999999999999999988
Q ss_pred cEEEEecC------------------CCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccC
Q psy3145 224 KTVINYRM------------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRII 282 (396)
Q Consensus 224 ~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~ 282 (396)
..||..+. -.|....+||.||+||.. +|.|..+++. ..++.+..+.-..+...++
T Consensus 720 v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs~---arF~~l~~~~t~em~r~pl 792 (1282)
T KOG0921|consen 720 VYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCSR---ARFEALEDHGTAEMFRTPL 792 (1282)
T ss_pred eEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccHH---HHHHHHHhcCcHhhhcCcc
Confidence 88886552 135677899999999986 8999988764 3344444444444443333
No 157
>KOG4439|consensus
Probab=97.33 E-value=0.0017 Score=66.91 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc--CCceE-EEeecc
Q psy3145 140 DRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD--EETDV-LIATDV 213 (396)
Q Consensus 140 ~k~~~l~~ll~~---~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~v-LvaT~~ 213 (396)
.|...+...+.. ..+.+++|...-.....-+...|+..|.....+||.....+|..+++.|.. |..+| |++=.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 444444444432 235678887777777788888999999999999999999999999999964 44554 567788
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
.|.|+|+-+.+|+|..|+-|++.-=-|.+.|..|.|+...+++.
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 89999999999999999999999999999999999988776653
No 158
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.16 E-value=0.0025 Score=68.72 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=37.8
Q ss_pred EeecccccccccCC----------------------c----------cEEEEecCCCChhHHHH--HHhhcccCCCCceE
Q psy3145 209 IATDVAARGLDIRG----------------------V----------KTVINYRMPHSLEHYIH--RVGRTARAGKGGVS 254 (396)
Q Consensus 209 vaT~~~~~Gidi~~----------------------v----------~~VI~~~~p~s~~~y~q--r~GRagR~g~~g~~ 254 (396)
++|+....|+|+|. + ++||.|+.-.+...-+| |.||+ |+++.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~---~r~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRP---LRPLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCC---CCCcEE
Confidence 77888889999997 5 89999997666666666 55554 445778
Q ss_pred EEEEcCcc
Q psy3145 255 VSMAGEVD 262 (396)
Q Consensus 255 i~l~~~~e 262 (396)
++++....
T Consensus 508 yfL~y~~S 515 (814)
T TIGR00596 508 YFLYYGGS 515 (814)
T ss_pred EEEEECCc
Confidence 88876543
No 159
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.15 E-value=0.0018 Score=60.89 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=61.5
Q ss_pred HHHHHhhcCCceEEEeecccccccccCC--------ccEEEEecCCCChhHHHHHHhhcccCCCC-ceEEEEEc---Ccc
Q psy3145 195 ESLRKFKDEETDVLIATDVAARGLDIRG--------VKTVINYRMPHSLEHYIHRVGRTARAGKG-GVSVSMAG---EVD 262 (396)
Q Consensus 195 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~--------v~~VI~~~~p~s~~~y~qr~GRagR~g~~-g~~i~l~~---~~e 262 (396)
...+.|.+|+.+|+|.|++++.||.+.. -++-|...+|||....+|..||+.|.|+. ...+.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998863 23677889999999999999999999975 44455443 345
Q ss_pred HHHHHHHHHHc
Q psy3145 263 RKLVKQVIKNA 273 (396)
Q Consensus 263 ~~~~~~i~~~~ 273 (396)
..+...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 160
>COG4889 Predicted helicase [General function prediction only]
Probab=97.08 E-value=0.00065 Score=71.52 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=80.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHh-------------cCCceEE--eeCCCCHHHHHHHHH---HhhcCCceEEEeeccccc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGL-------------LGIKAGE--LHGNLTQPSRLESLR---KFKDEETDVLIATDVAAR 216 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~-------------~~~~~~~--lhg~~~~~~r~~~~~---~f~~g~~~vLvaT~~~~~ 216 (396)
.+.|-||.+.++...+++.+.. .++.+.+ +.|.|...+|...++ .|...+.+||--...+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4789999999988888776632 2445554 448899999865544 356678889888889999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCC--C-CceEEEE
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG--K-GGVSVSM 257 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g--~-~g~~i~l 257 (396)
|+|+|..+.||-++.-.+.-+.+|.+||.-|-. + .|..|+=
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 999999999999999999999999999998853 2 2666653
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0029 Score=67.36 Aligned_cols=119 Identities=21% Similarity=0.159 Sum_probs=83.8
Q ss_pred HHHH-HHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCc-eEEEeecccccc
Q psy3145 141 RKAL-LAALVC-RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEET-DVLIATDVAARG 217 (396)
Q Consensus 141 k~~~-l~~ll~-~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~G 217 (396)
|... +..+.. ...+.|+||-+.+....+.+.+.|.+.|++...+...-. +++.-+-.. .|+. -|-|||+.+|||
T Consensus 414 K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~gaVTiATNMAGRG 490 (822)
T COG0653 414 KFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPGAVTIATNMAGRG 490 (822)
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCCccccccccccCC
Confidence 4433 444433 344789999999999999999999999998877776544 333333333 2333 467999999999
Q ss_pred cccCCcc-----------EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCcc
Q psy3145 218 LDIRGVK-----------TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVD 262 (396)
Q Consensus 218 idi~~v~-----------~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e 262 (396)
-||.--. +||-..--.|..---|-.||+||.|.+|.+..|++-.|
T Consensus 491 TDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 491 TDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 9984211 45544444455555699999999999999998887543
No 162
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.86 E-value=0.013 Score=49.82 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=37.7
Q ss_pred eeCCCCHHHHHHHHHHhhcCC-ceEEEeecccccccccCC--ccEEEEecCC
Q psy3145 184 LHGNLTQPSRLESLRKFKDEE-TDVLIATDVAARGLDIRG--VKTVINYRMP 232 (396)
Q Consensus 184 lhg~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~--v~~VI~~~~p 232 (396)
+.-+.+..+...+++.|+... ..||++|.-+++|+|+|+ +++||...+|
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 333445556788899998754 379999988999999996 5688888877
No 163
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.81 E-value=0.00041 Score=60.06 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=34.5
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC--CC
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC--WS 103 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~--~~ 103 (396)
+.+++++|+||+|.+..++++ ..+..|+..+. .+
T Consensus 117 ~~~~~~iViDE~h~l~~~~~~--------------------------------------------~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDETFR--------------------------------------------AMLKSILRRLKRFKN 152 (169)
T ss_dssp GTTESEEEEETHHHHHHTTHH--------------------------------------------HHHHHHHHHSHTTTT
T ss_pred cccceeeccCcccccccccHH--------------------------------------------HHHHHHHHHhcCCCC
Confidence 345899999999987776432 33466666663 26
Q ss_pred CcEEEEeecCChhh
Q psy3145 104 KGTFQSNASMTSFL 117 (396)
Q Consensus 104 ~q~ll~SAT~~~~~ 117 (396)
.|++++|||+++.+
T Consensus 153 ~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 153 IQIILLSATLPSNV 166 (169)
T ss_dssp SEEEEEESSSTHHH
T ss_pred CcEEEEeeCCChhH
Confidence 89999999999544
No 164
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.77 E-value=0.012 Score=49.94 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCC---ceEEeeCCCCHHHHHHHHHHhhcCCc---eEEEeecc--cccccccCC--ccEEEEecCC
Q psy3145 167 AHEMHILLGLLGI---KAGELHGNLTQPSRLESLRKFKDEET---DVLIATDV--AARGLDIRG--VKTVINYRMP 232 (396)
Q Consensus 167 ~~~l~~~L~~~~~---~~~~lhg~~~~~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gidi~~--v~~VI~~~~p 232 (396)
.+.++..+...+. ....+.-+....+...+++.|+...- .||+++.- +++|||+|+ +++||..++|
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3455555554432 12222222233345788888987543 58888877 999999996 6789988877
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.77 E-value=0.021 Score=60.08 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc----CCceEEEeecccccccc
Q psy3145 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD----EETDVLIATDVAARGLD 219 (396)
Q Consensus 144 ~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gid 219 (396)
.+..++. ..+++++|.+.|.+..+.++..|...---...+.|..+ .+...+++|+. |.-.||++|+.+..|||
T Consensus 461 ~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 461 STAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3444443 33578999999999999999999654323345667543 35668888987 46889999999999999
Q ss_pred c----------CCccEEEEecCC
Q psy3145 220 I----------RGVKTVINYRMP 232 (396)
Q Consensus 220 i----------~~v~~VI~~~~p 232 (396)
+ ..+++||...+|
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCC
Confidence 9 258899988877
No 166
>KOG1016|consensus
Probab=96.71 E-value=0.0066 Score=63.35 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCce------------------EEeeCCCCHHHHHHHHHHhhcCC---ceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKA------------------GELHGNLTQPSRLESLRKFKDEE---TDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~------------------~~lhg~~~~~~r~~~~~~f~~g~---~~vLvaT~ 212 (396)
+.++|||.......+.+-+.|.+..+.| .-+.|..+..+|++.+.+|.+.- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4589999999999988888887653222 34567788899999999998642 35789999
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHH
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~ 270 (396)
+...|||+-..+-+|.||.-|++..-.|.+-|.-|.|+...|+++---.|..+-+.|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999999999999999999999999999999999988887765444444444443
No 167
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.94 E-value=0.054 Score=58.07 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=66.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccccCCccEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLDIRGVKTVI 227 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gidi~~v~~VI 227 (396)
.+.+++|.++|+.-|...++.++. .|+++..+||+++..+|..+++.+.+|+.+|+|+|... ...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 356899999999999888877654 37899999999999999999999999999999999854 4567788999888
Q ss_pred Eec
Q psy3145 228 NYR 230 (396)
Q Consensus 228 ~~~ 230 (396)
.=.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 543
No 168
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.71 E-value=0.098 Score=56.03 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=64.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh-cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL-LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~ 230 (396)
+.++||.++++..+.++++.|+. .|..+..+||+++..+|.+.+.++.+|+.+|+|+|..+- -+.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 56899999999999999998876 478899999999999999999999999999999997432 25567888877654
No 169
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.046 Score=59.12 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcC-----CceEE-eeCCCCHHHHHHHHHHhhcCCceEEEeeccc
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLG-----IKAGE-LHGNLTQPSRLESLRKFKDEETDVLIATDVA 214 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~-----~~~~~-lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 214 (396)
-+-++..+.-...++++++.++|..-+.+.++.|...+ ..+.. |||.|+..++.+++++|.+|..+|||+|+.+
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34455555555667899999999999999998887653 44333 9999999999999999999999999999854
No 170
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.45 E-value=0.015 Score=50.88 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhh
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFL 117 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~ 117 (396)
..+..++..++...+++++|||+++..
T Consensus 148 ~~~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 148 DQLEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHHHHHhCCccceEEEEecCCchhH
Confidence 455677777788999999999998766
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.31 E-value=0.089 Score=54.30 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=64.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR 230 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~ 230 (396)
++++||.+++..-+..+++.|+.. |..+..+||+++..+|.+...+..+|+.+|+|+|..+- -..++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEEC
Confidence 568999999999999999988764 77899999999999999999999999999999997543 24566788777544
No 172
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.26 E-value=0.085 Score=56.03 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccccCCccEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLDIRGVKTVI 227 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gidi~~v~~VI 227 (396)
.+.++++.++|+.-|..+++.++. .|+++..+||+++..+|...++.+.+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 356899999999999988877654 37899999999999999999999999999999999865 3457778888877
Q ss_pred Eec
Q psy3145 228 NYR 230 (396)
Q Consensus 228 ~~~ 230 (396)
.=.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 533
No 173
>KOG1001|consensus
Probab=95.15 E-value=0.0046 Score=65.34 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=91.1
Q ss_pred cEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC-ce-EEEeecccccccccCCccEEEEecCCC
Q psy3145 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE-TD-VLIATDVAARGLDIRGVKTVINYRMPH 233 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gidi~~v~~VI~~~~p~ 233 (396)
+++||++-..-+.-+...|...++....+.|.|+...|...+..|..+. .. .+++..+.+.|+++..+.+|+..|.-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999888999999999999999999999998654 23 457889999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCCceEEE
Q psy3145 234 SLEHYIHRVGRTARAGKGGVSVS 256 (396)
Q Consensus 234 s~~~y~qr~GRagR~g~~g~~i~ 256 (396)
|+..--|.+-|+.|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998766554
No 174
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.79 E-value=0.19 Score=55.57 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccccCCccEEEE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLDIRGVKTVIN 228 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gidi~~v~~VI~ 228 (396)
+.+++|.++|+.-|.+.++.++.. ++++..++|+.+..++..+++.+++|+.+|+|+|..+ ...+.+.++.++|.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 578999999999999998877653 6788899999999999999999999999999999844 45678888888775
Q ss_pred ec
Q psy3145 229 YR 230 (396)
Q Consensus 229 ~~ 230 (396)
-.
T Consensus 580 DE 581 (926)
T TIGR00580 580 DE 581 (926)
T ss_pred ec
Confidence 43
No 175
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.71 E-value=0.16 Score=52.96 Aligned_cols=151 Identities=23% Similarity=0.335 Sum_probs=98.1
Q ss_pred hcCCCcEEEEeCChHHHHHH----HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccccCCccE
Q psy3145 151 RTFKDHTMIFVPTKREAHEM----HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLDIRGVKT 225 (396)
Q Consensus 151 ~~~~~~~iIF~~t~~~~~~l----~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gidi~~v~~ 225 (396)
-..+.++...++|---|+.. .++|...|+++..+.|.+...+|.++++...+|+++++|.|-++ ...+++.+.-.
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 34467999999997655554 45556679999999999999999999999999999999999876 67899999888
Q ss_pred EEEecCCCChhHHHHHHhhcccC-----CC-CceEEEE-EcCccHHHHHHHHHHcCCCCccccCCCCCCCCCCCCCCCCC
Q psy3145 226 VINYRMPHSLEHYIHRVGRTARA-----GK-GGVSVSM-AGEVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPP 298 (396)
Q Consensus 226 VI~~~~p~s~~~y~qr~GRagR~-----g~-~g~~i~l-~~~~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (396)
||.-. -||.|-.-|. |. .-.+.++ .+|--+...-.+.-.+...+ -..+|++-..+.+..++...
T Consensus 388 VIiDE--------QHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~-IdElP~GRkpI~T~~i~~~~ 458 (677)
T COG1200 388 VIIDE--------QHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSI-IDELPPGRKPITTVVIPHER 458 (677)
T ss_pred EEEec--------cccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchh-hccCCCCCCceEEEEecccc
Confidence 87533 2444433221 22 1233333 23444443333332222221 24566665666666677666
Q ss_pred hHHHHHHHHHHH
Q psy3145 299 LAEIVDKYRAKV 310 (396)
Q Consensus 299 ~~~~~~~~~~~~ 310 (396)
..++++...+++
T Consensus 459 ~~~v~e~i~~ei 470 (677)
T COG1200 459 RPEVYERIREEI 470 (677)
T ss_pred HHHHHHHHHHHH
Confidence 666665443333
No 176
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.51 E-value=0.15 Score=54.35 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc-C-CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 140 DRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL-G-IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 140 ~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
.|.+.+..++... .++++||.++....+..+...|+.. | ..+..+|+++++.+|.+.+.+..+|+.+|+|.|-.+-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 5666666665433 2678999999999999999999765 4 6799999999999999999999999999999997542
Q ss_pred cccccCCccEEEEec
Q psy3145 216 RGLDIRGVKTVINYR 230 (396)
Q Consensus 216 ~Gidi~~v~~VI~~~ 230 (396)
-.=+++...||..+
T Consensus 252 -FaP~~~LgLIIvdE 265 (665)
T PRK14873 252 -FAPVEDLGLVAIWD 265 (665)
T ss_pred -EeccCCCCEEEEEc
Confidence 23455677777654
No 177
>KOG0701|consensus
Probab=94.24 E-value=0.03 Score=63.75 Aligned_cols=95 Identities=26% Similarity=0.334 Sum_probs=78.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC-CceEEeeCCCCH-----------HHHHHHHHHhhcCCceEEEeecccccccccCC
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLG-IKAGELHGNLTQ-----------PSRLESLRKFKDEETDVLIATDVAARGLDIRG 222 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~-~~~~~lhg~~~~-----------~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 222 (396)
-..|+|++-+..+...++.++..+ ..+..+.|.+.+ ..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 357999999999988888876653 344445565422 23568889999999999999999999999999
Q ss_pred ccEEEEecCCCChhHHHHHHhhcccCC
Q psy3145 223 VKTVINYRMPHSLEHYIHRVGRTARAG 249 (396)
Q Consensus 223 v~~VI~~~~p~s~~~y~qr~GRagR~g 249 (396)
++.|+.++.|.....|+|+.||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999986554
No 178
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.15 Score=54.36 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc
Q psy3145 138 HLDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 214 (396)
.+.|.++...++... .++++||.++.......+...|+.. |.++..+|+++++.+|.....+.++|+.+|+|.|-.+
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 345777766666443 2578999999999888888877654 8899999999999999999999999999999998643
Q ss_pred ccccccCCccEEEE
Q psy3145 215 ARGLDIRGVKTVIN 228 (396)
Q Consensus 215 ~~Gidi~~v~~VI~ 228 (396)
- -.=+++...||.
T Consensus 307 l-F~Pf~~LGLIIv 319 (730)
T COG1198 307 L-FLPFKNLGLIIV 319 (730)
T ss_pred h-cCchhhccEEEE
Confidence 1 223456666664
No 179
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.60 E-value=0.33 Score=54.95 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-cccccccCCccEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-AARGLDIRGVKTVI 227 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~v~~VI 227 (396)
.+.+++|.++|+.-|..++..+... ++++..++|+.+..++..+++.+++|..+|+|+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3678999999999999998887653 567888999999999999999999999999999974 34456777888777
Q ss_pred E
Q psy3145 228 N 228 (396)
Q Consensus 228 ~ 228 (396)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 180
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.4 Score=49.68 Aligned_cols=68 Identities=29% Similarity=0.547 Sum_probs=54.7
Q ss_pred EEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCccE
Q psy3145 157 TMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVKT 225 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~~ 225 (396)
+||.++|++-|.++++.+... ++++..++||++...+...++ .| .+|||||+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999887543 467899999998877664444 46 89999998 35555 88888888
Q ss_pred EEE
Q psy3145 226 VIN 228 (396)
Q Consensus 226 VI~ 228 (396)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 181
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.16 E-value=0.12 Score=44.81 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=13.1
Q ss_pred HHHHHHCCCCCcEEEEeecCC
Q psy3145 94 TEIVVAYCWSKGTFQSNASMT 114 (396)
Q Consensus 94 ~~il~~~~~~~q~ll~SAT~~ 114 (396)
.+++. .....++.||||++
T Consensus 165 ~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 165 REIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HHHHH--SSCCEEEEEESS-S
T ss_pred HHHHc--CCCCeEEEEEeCcc
Confidence 44444 55777999999986
No 182
>KOG1513|consensus
Probab=93.05 E-value=0.15 Score=53.79 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=55.7
Q ss_pred HHHhhcCCceEEEeecccccccccCCccEEE--------EecCCCChhHHHHHHhhcccCCCC-ceEEEE-Ec--CccHH
Q psy3145 197 LRKFKDEETDVLIATDVAARGLDIRGVKTVI--------NYRMPHSLEHYIHRVGRTARAGKG-GVSVSM-AG--EVDRK 264 (396)
Q Consensus 197 ~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI--------~~~~p~s~~~y~qr~GRagR~g~~-g~~i~l-~~--~~e~~ 264 (396)
-++|..|+-.|-|-+.+++-||-++.-+-|+ -..+|||...-+|..||+.|..+- +.-++| ++ ..|+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4679999999999999999999998666554 477999999999999999998863 444443 33 33555
Q ss_pred HHHHHHH
Q psy3145 265 LVKQVIK 271 (396)
Q Consensus 265 ~~~~i~~ 271 (396)
+..-+.+
T Consensus 930 FAS~VAK 936 (1300)
T KOG1513|consen 930 FASIVAK 936 (1300)
T ss_pred HHHHHHH
Confidence 4444433
No 183
>PRK14701 reverse gyrase; Provisional
Probab=92.79 E-value=0.39 Score=56.08 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
.+.+++|.++|+.-+.+++..|+.. ++.+..+||+++..++...++.+++|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 467789999999999999999999999999999984
No 184
>KOG2340|consensus
Probab=92.72 E-value=0.62 Score=47.31 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=89.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc--ccccccCCccEEEEecC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA--ARGLDIRGVKTVINYRM 231 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~--~~Gidi~~v~~VI~~~~ 231 (396)
..-++||.++--.--++..++++.++....+|-=.+...-.++-+-|-.|...+|+-|.-+ -+--+|.+|.-||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 3467999999999999999999888776666554445555566778999999999999854 46789999999999999
Q ss_pred CCChhHH---HHHHhhcccCC----CCceEEEEEcCccHHHHHHHH
Q psy3145 232 PHSLEHY---IHRVGRTARAG----KGGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 232 p~s~~~y---~qr~GRagR~g----~~g~~i~l~~~~e~~~~~~i~ 270 (396)
|.+|.=| +.+.||+.-.| ..-.|.++++..|.-.+..+.
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9987655 56667764333 235688888888876666553
No 185
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.45 E-value=0.074 Score=43.36 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=13.2
Q ss_pred HHHCCCCCcEEEEeecC
Q psy3145 97 VVAYCWSKGTFQSNASM 113 (396)
Q Consensus 97 l~~~~~~~q~ll~SAT~ 113 (396)
....+...+++++|||+
T Consensus 128 ~~~~~~~~~~i~~saTp 144 (144)
T cd00046 128 LLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhhCCccceEEEEeccC
Confidence 34456788999999996
No 186
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.34 E-value=4.7 Score=35.64 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=53.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-cccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-LDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-idi~~ 222 (396)
.+.++||.++++..+...+..+... ++.+..++|+.+..+....+. +..+++|+|+- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999998887766544 678889999988766554333 56789999962 2222 56778
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
++++|.=+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88777533
No 187
>KOG0331|consensus
Probab=92.06 E-value=1.6 Score=44.75 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=68.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v 223 (396)
...+||.++|++-|..+...+.+. ++++.+++||.+...+...+++ -++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 346999999999999999888765 4568999999887766555442 468999998 45555 788888
Q ss_pred cEEEE--------ecCCCChhHHHHHHhhccc
Q psy3145 224 KTVIN--------YRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 224 ~~VI~--------~~~p~s~~~y~qr~GRagR 247 (396)
.+++. .++-..+...+++++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88885 3344567778888877766
No 188
>KOG0347|consensus
Probab=91.56 E-value=0.9 Score=46.40 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=46.8
Q ss_pred cEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 156 HTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
-.|||++|+.-|..+...|... ++++..+.|||+...+++++.+ .-+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3899999999999999998654 8999999999999988888887 457899998
No 189
>KOG0343|consensus
Probab=91.29 E-value=0.18 Score=51.36 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=56.5
Q ss_pred ceeEEEeccccccccCCCCCCce-EEeCCcc---cccccccCCCcc-----------ccccccee---------------
Q psy3145 28 GLRVYVETEACPKANLGWYPQTA-IVPNLPR---LKFSSEYQPKKF-----------KTKKITDF--------------- 77 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~~---l~~~~~~~~~~l-----------~~~~id~~--------------- 77 (396)
++.+||+||||+++++||..... |+...|. .++..+.+..++ .++.+.+-
T Consensus 215 ~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred cceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEE
Confidence 57799999999999999988766 6666663 222222211111 11111100
Q ss_pred ----ec---------------ccCCccccccHHHHHHHHHHCCCCCcEEEEeecCChhh
Q psy3145 78 ----DN---------------DFSFVSSIEEYNKDTEIVVAYCWSKGTFQSNASMTSFL 117 (396)
Q Consensus 78 ----De---------------~~~~l~~~~~~~~i~~il~~~~~~~q~ll~SAT~~~~~ 117 (396)
|. ...|+.++.-..-+.+++..+.++.+++.++.|+.+.-
T Consensus 295 v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKK 353 (758)
T ss_pred EehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHH
Confidence 00 12355555555566788888989999999999998776
No 190
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.86 E-value=1 Score=45.94 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=55.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccc-cccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAA-RGLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~ 222 (396)
..++||.++|+.-|..+++.++.. ++++..++|+.+...+...++ +..+|+|+|+ .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347999999999999998877653 578899999998876554443 4678999995 233 3477888
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.-+
T Consensus 148 l~~lViDE 155 (460)
T PRK11776 148 LNTLVLDE 155 (460)
T ss_pred CCEEEEEC
Confidence 99888644
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.01 E-value=2.3 Score=43.56 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=62.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-cc------cc-ccCCccE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-AR------GL-DIRGVKT 225 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~------Gi-di~~v~~ 225 (396)
++.+||.+++++-+......|...|+.+..++|+.+..++..++..+..|..+++++|+-. .. .+ ....+++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 5689999999999999999999999999999999999999999999999999999999732 11 12 4456676
Q ss_pred EEE
Q psy3145 226 VIN 228 (396)
Q Consensus 226 VI~ 228 (396)
||.
T Consensus 131 iVi 133 (470)
T TIGR00614 131 IAV 133 (470)
T ss_pred EEE
Confidence 664
No 192
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.00 E-value=1.3 Score=46.97 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=52.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc-ccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR-GLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 222 (396)
..++||.|+|+.-|..+++.+... ++.+..+||+.+...+...+ + +..+|+|+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 458999999999999998876543 68899999998766554433 2 3568999996 3333 367778
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 887764
No 193
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=89.96 E-value=6.2 Score=40.13 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=80.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-CC---ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec------ccccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-GI---KAGELHGNLTQPSRLESLRKFKDEETDVLIATD------VAARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gidi~~v 223 (396)
++++|+..+|+--+..-+..+.+. |+ .+..+.|..++++|...+.. .+|+|||+ ..+--||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 348999999999888877777553 44 57799999999999987763 46899997 23333899999
Q ss_pred cEEEEecCCCCh--hHHHHHHhhcccCCCCceEEEE--EcCccHHHHHHHHHHcCCC
Q psy3145 224 KTVINYRMPHSL--EHYIHRVGRTARAGKGGVSVSM--AGEVDRKLVKQVIKNAKNP 276 (396)
Q Consensus 224 ~~VI~~~~p~s~--~~y~qr~GRagR~g~~g~~i~l--~~~~e~~~~~~i~~~~~~~ 276 (396)
.++|.-..-... -.|+.-+-.--|....-..+-+ -...+...++++.++++..
T Consensus 133 ~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe 189 (542)
T COG1111 133 SLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIE 189 (542)
T ss_pred eEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcc
Confidence 988864433221 2355555444555444333333 2356778899999988753
No 194
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.87 E-value=1.1 Score=50.84 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=57.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCce---EEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc-ccc-cC-Cc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKA---GELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR-GLD-IR-GV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~---~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~-Gid-i~-~v 223 (396)
+.+++|.++|+.-|.+++..+... |+.+ ..+||+++..++...++.+++|..+|||+|+..-. .++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 578999999999999998887654 3433 46899999999999999999999999999984211 111 12 56
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
+++|.=+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 6666533
No 195
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=89.52 E-value=2.7 Score=44.33 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
++.++|.++++.-+......|+..|+.+..+||+++..++..++..+..|..++++.|+-
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 567899999999999888999999999999999999999999999999999999998863
No 196
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.31 E-value=1.7 Score=48.30 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-ccccccccCCccEE
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-VAARGLDIRGVKTV 226 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gidi~~v~~V 226 (396)
..++++.|.++|.--|+.-++-++++ ++++..+.--.+..+...+++.+++|+++|+|.|- +++.+|-+.+..++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 34689999999999999888888765 66788888888999999999999999999999997 56888999999988
Q ss_pred EE
Q psy3145 227 IN 228 (396)
Q Consensus 227 I~ 228 (396)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 74
No 197
>KOG0339|consensus
Probab=88.13 E-value=5.7 Score=40.48 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=51.8
Q ss_pred Cc-EEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec------ccccccccCCc
Q psy3145 155 DH-TMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD------VAARGLDIRGV 223 (396)
Q Consensus 155 ~~-~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gidi~~v 223 (396)
+| .+|.|+|+..|..+....+.. |+++.++|||++..++...++ ....++|||+ +--.|+|+..+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 44 478889999988876655443 789999999999988776665 3457999998 22336777777
Q ss_pred cEEEE
Q psy3145 224 KTVIN 228 (396)
Q Consensus 224 ~~VI~ 228 (396)
++.+.
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 76553
No 198
>KOG0330|consensus
Probab=86.92 E-value=2.8 Score=41.14 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc--
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-- 214 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 214 (396)
-+-+|..|+.......++|.++|++-|..+++.+... |+++..+-||++.... ....++ +..|||||+-.
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~~L~k--kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--ANQLSK--KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HHHhhc--CCCEEEeCcHHHH
Confidence 4556777777666778999999999999999988665 6889999999876543 333333 56789999821
Q ss_pred -----ccccccCCccEEE
Q psy3145 215 -----ARGLDIRGVKTVI 227 (396)
Q Consensus 215 -----~~Gidi~~v~~VI 227 (396)
..|..+..+++.|
T Consensus 192 dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHhccCccHHHhHHHh
Confidence 3566665555444
No 199
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.42 E-value=5.4 Score=40.22 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc------cccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV------AARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gidi~~v 223 (396)
..++||.++|+.-+..+++.+.. .++++..++|+.+...+...+. +..+|+|+|+- ....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35899999999999888776544 4788999999988776654442 46789999972 2245677888
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
++||.=+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8887544
No 200
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=84.71 E-value=1 Score=38.26 Aligned_cols=15 Identities=7% Similarity=-0.161 Sum_probs=9.7
Q ss_pred CCcEEEEeecCChhh
Q psy3145 103 SKGTFQSNASMTSFL 117 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~ 117 (396)
...++++|||+|...
T Consensus 126 ~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 126 EAKVIFMTATPPGSE 140 (148)
T ss_dssp S-EEEEEESS-TT--
T ss_pred CeeEEEEeCCCCCCC
Confidence 457999999999765
No 201
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.06 E-value=5.4 Score=36.93 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCC----ceEEEeecccccccccCCccEEEEecCCCChhHHHHHHh
Q psy3145 168 HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEE----TDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 168 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~----~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~G 243 (396)
..+...+.. ++.+..++|+.+... -.+.++. ..|+|+=+.++||+.+++..+..-..-|...+.+.|| |
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-g 173 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-G 173 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-h
Confidence 344444444 688888887655433 3344443 7899999999999999999999888888877777776 4
Q ss_pred h-cc-cCCCCceEEEEEcCccHHHHHHHH
Q psy3145 244 R-TA-RAGKGGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 244 R-ag-R~g~~g~~i~l~~~~e~~~~~~i~ 270 (396)
| -| |.|-.+.|-++.++.-...+..+.
T Consensus 174 RwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 174 RWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred hcccCCcccccceEEecCHHHHHHHHHHH
Confidence 5 34 677677888887765555554443
No 202
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=84.04 E-value=25 Score=29.69 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=63.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHH-HHHHHHHHhhcCCceEEEeecc------cccccccC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQP-SRLESLRKFKDEETDVLIATDV------AARGLDIR 221 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~-~r~~~~~~f~~g~~~vLvaT~~------~~~Gidi~ 221 (396)
...++|+.++++..++.+...+... +.++..+||+.+.. +....+ .+..+++|+|.. ....+++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 4469999999999999998888665 35788899988754 222223 567889999972 12234677
Q ss_pred CccEEEEecC----CCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 222 GVKTVINYRM----PHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 222 ~v~~VI~~~~----p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
.+++||.=++ .++....+..+.+.-..+.....+.+
T Consensus 119 ~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 7777775332 22334444444443333334443333
No 203
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.03 E-value=5.7 Score=41.76 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=52.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc--ccccCCc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR--GLDIRGV 223 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gidi~~v 223 (396)
.++||.++|+.-|..+++.+... ++.+..+||+.+...+...+. +..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 58999999999999888876554 678999999988776654443 4578999996 2222 3667777
Q ss_pred cEEEE
Q psy3145 224 KTVIN 228 (396)
Q Consensus 224 ~~VI~ 228 (396)
+++|.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 77664
No 204
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=83.36 E-value=8.9 Score=40.66 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=54.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.+.+||.++++.-+......|...|+.+..++++.+..++..++.....|+++++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 46799999999999999999999999999999999999999999999999999999886
No 205
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=82.95 E-value=10 Score=38.55 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=52.8
Q ss_pred cEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec------ccccccccCCccE
Q psy3145 156 HTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD------VAARGLDIRGVKT 225 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gidi~~v~~ 225 (396)
++||.++|+.-|..+++.+... ++.+..++|+.+....... + .+..+|+|||+ .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6999999999999888877653 6788889999887654332 2 35679999997 2234567888888
Q ss_pred EEEec
Q psy3145 226 VINYR 230 (396)
Q Consensus 226 VI~~~ 230 (396)
+|.=+
T Consensus 153 lViDE 157 (456)
T PRK10590 153 LVLDE 157 (456)
T ss_pred EEeec
Confidence 77643
No 206
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.79 E-value=11 Score=37.87 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=52.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----c-ccccccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----A-ARGLDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gidi~~v~ 224 (396)
.++||.++|+.-|.++++.+.. .|+++..++|+.+.......+ . +..+|+|+|+- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL---E-SGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999988776543 378899999997765544333 2 35689999982 2 2346788888
Q ss_pred EEEEec
Q psy3145 225 TVINYR 230 (396)
Q Consensus 225 ~VI~~~ 230 (396)
++|.-.
T Consensus 160 ~lViDE 165 (423)
T PRK04837 160 VVVLDE 165 (423)
T ss_pred EEEEec
Confidence 887644
No 207
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=82.10 E-value=10 Score=42.74 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc--CCceEEEeecc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD--EETDVLIATDV 213 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~ 213 (396)
.+.+||.+++++-+..-...|...|+++..+.|+++..++..++..+.. |++++|++|+-
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 4689999999999886666677889999999999999999999999877 89999999983
No 208
>KOG0298|consensus
Probab=81.50 E-value=3.1 Score=46.61 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=72.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce-EEEeecccccccccCCccEEEEecCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD-VLIATDVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gidi~~v~~VI~~~~p 232 (396)
..++|+|+.--..-+-+...+...++....--+ -+.-...+..|++ +. .++-+...+-|+|+-+..+|+..+.-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 468999998877766666666555555432222 2334556777776 55 45778888999999999999999998
Q ss_pred CChhHHHHHHhhcccCCCCceE
Q psy3145 233 HSLEHYIHRVGRTARAGKGGVS 254 (396)
Q Consensus 233 ~s~~~y~qr~GRagR~g~~g~~ 254 (396)
.++..-.|.+||..|.|++...
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred cCchHHHhhhhhhhhcccccch
Confidence 9999999999999999987443
No 209
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=81.39 E-value=6.1 Score=42.50 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 145 l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
+..++....+.++.|.++|..-|.+.++.+.. .|+++..+.|+++..+|..... .+|+++|+.
T Consensus 88 lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 88 LPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 33334555577899999999888887776654 4899999999999888776653 589999985
No 210
>KOG0338|consensus
Probab=80.98 E-value=9.7 Score=38.90 Aligned_cols=85 Identities=22% Similarity=0.360 Sum_probs=57.9
Q ss_pred HHHHHHHhhcC---CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc--
Q psy3145 143 ALLAALVCRTF---KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-- 213 (396)
Q Consensus 143 ~~l~~ll~~~~---~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-- 213 (396)
-+|..|+.+.. -.++||.|+|+.-+-.++...+.. .+.++..-||++-..+..+++. .-+|+|||+-
T Consensus 238 PiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRl 313 (691)
T KOG0338|consen 238 PILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRL 313 (691)
T ss_pred HHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhH
Confidence 34555554333 368999999999877666655433 6788888899998888777764 4579999991
Q ss_pred -----cccccccCCccEEEEecC
Q psy3145 214 -----AARGLDIRGVKTVINYRM 231 (396)
Q Consensus 214 -----~~~Gidi~~v~~VI~~~~ 231 (396)
=+.+.|+.++.+.|.-..
T Consensus 314 IDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 314 IDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred HHHhccCCCccccceeEEEechH
Confidence 133455566666665443
No 211
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.74 E-value=9.9 Score=38.89 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=52.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----c-ccccccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----A-ARGLDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gidi~~v~ 224 (396)
.++||.++|+.-+..+++.++.. ++.+..++|+.+..... +.+..+..+|+|+|+- . ...+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 57999999999999988877654 67889999987654433 3455677899999972 1 2245667778
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7775
No 212
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=80.67 E-value=2.8 Score=31.96 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.++++||++-..+...+..|+..|+++..+.||+.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 578999999988888899999999999999999975
No 213
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=80.01 E-value=12 Score=39.95 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC
Q psy3145 146 AALVCRTFKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR 221 (396)
Q Consensus 146 ~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 221 (396)
..+.....+.+++|.++|+.-|.+.++.+.. .|+++..+.|++++.+|.... ..+|+++|+ .+-|.|.-
T Consensus 136 p~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~-~e~~FDyL 208 (656)
T PRK12898 136 PAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN-KELVFDYL 208 (656)
T ss_pred HHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC-Cchhhhhc
Confidence 3333444567999999999988877777654 589999999999887666543 357899887 46677774
Q ss_pred CccEE
Q psy3145 222 GVKTV 226 (396)
Q Consensus 222 ~v~~V 226 (396)
.=+.+
T Consensus 209 rd~~~ 213 (656)
T PRK12898 209 RDRLA 213 (656)
T ss_pred ccccc
Confidence 43433
No 214
>KOG0389|consensus
Probab=79.97 E-value=10 Score=40.77 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcC--CceEEEeeccc
Q psy3145 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDE--ETDVLIATDVA 214 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~~~ 214 (396)
.+-.+.|..|.....++|-||.|++-.--.++.+ +... .+++..||| ++.+|.++-..+..+ .++|||+|--+
T Consensus 433 iQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE-f~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~l 509 (941)
T KOG0389|consen 433 IQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE-FAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNL 509 (941)
T ss_pred hHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH-HHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeec
Confidence 3455666666666678899999998654444443 3333 578999999 579999999999876 78899999755
Q ss_pred ccc
Q psy3145 215 ARG 217 (396)
Q Consensus 215 ~~G 217 (396)
+.|
T Consensus 510 a~~ 512 (941)
T KOG0389|consen 510 AAS 512 (941)
T ss_pred ccC
Confidence 544
No 215
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=78.18 E-value=5 Score=30.35 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=33.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
....++|+||.+-..+..++..|...|+. +..+.||+..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 34678999999999999999999999987 8888998754
No 216
>PRK09401 reverse gyrase; Reviewed
Probab=78.07 E-value=7.5 Score=44.42 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=48.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEE--eeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGE--LHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~--lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.+.+++|.++|+.-+.+++..++.. ++.+.. .||+++..++.+..+.+++|..+|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 3678999999999999999988765 334433 35556678888888999999999999996
No 217
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=76.29 E-value=3.8 Score=31.85 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.+.+++++|.+-..+...+..|...|+.+..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 45789999999888899999999999998888898753
No 218
>KOG1133|consensus
Probab=74.24 E-value=68 Score=34.25 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC-------ceEEeeCCCCHHHHHHHHHHhh----cCCceEEEee--ccccccccc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGI-------KAGELHGNLTQPSRLESLRKFK----DEETDVLIAT--DVAARGLDI 220 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~----~g~~~vLvaT--~~~~~Gidi 220 (396)
++-+++|++|..-...+.+.+...|+ +..++-..-+ -..+++.+. .|.--+|+|- --++.|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47799999999988888888876653 2222222222 234555554 3444455543 456889999
Q ss_pred CC--ccEEEEecCCCC--------------------------------hhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 221 RG--VKTVINYRMPHS--------------------------------LEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 221 ~~--v~~VI~~~~p~s--------------------------------~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
.| +++|+..++|-. ....-|-+|||=|..++=.++.+++
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 74 678999888731 1123488899988876655666655
No 219
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=72.95 E-value=9.1 Score=40.09 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=53.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.+-+||-.+=..--+.=...|...|+.+.++++.++.++|..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 57899999998888888888999999999999999999999999999999999886655
No 220
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=72.54 E-value=7.1 Score=30.07 Aligned_cols=38 Identities=16% Similarity=-0.035 Sum_probs=31.9
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLT 189 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~ 189 (396)
..+.++|+||++-..+...+..|...|+ ++..+.||+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3467899999998888888999999998 5888888874
No 221
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=72.46 E-value=15 Score=40.30 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 146 AALVCRTFKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 146 ~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
..++....+..+.|.++|..-|.+.++.+.. .|+.+.+++|+++..+|...+ ..+|+++|+. .-|.|.
T Consensus 115 pa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g-rlgfDy 186 (896)
T PRK13104 115 PAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN-EYGFDY 186 (896)
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh-hhhHHH
Confidence 3333344566799999999888888877754 489999999999998886665 3689999982 334554
No 222
>PTZ00110 helicase; Provisional
Probab=71.99 E-value=26 Score=36.57 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=52.0
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~ 224 (396)
..+||.++|++-|..+...+... ++++..++|+.+.......+ +. ..+|+|+|+ .+..+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 46899999999999988887765 46788889988765544333 33 368999997 33333 6677888
Q ss_pred EEEEec
Q psy3145 225 TVINYR 230 (396)
Q Consensus 225 ~VI~~~ 230 (396)
+||.=.
T Consensus 280 ~lViDE 285 (545)
T PTZ00110 280 YLVLDE 285 (545)
T ss_pred EEEeeh
Confidence 777543
No 223
>PRK13766 Hef nuclease; Provisional
Probab=71.76 E-value=16 Score=39.84 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=54.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhc-CC---ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc------cccccccC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLL-GI---KAGELHGNLTQPSRLESLRKFKDEETDVLIATDV------AARGLDIR 221 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gidi~ 221 (396)
..++++||.++|+..++..+..++.. +. .+..++|+.+..+|..... ..+|+|+|+- ...-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChh
Confidence 34689999999999988877777654 33 7888999999888765554 2468999972 22345667
Q ss_pred CccEEEEec
Q psy3145 222 GVKTVINYR 230 (396)
Q Consensus 222 ~v~~VI~~~ 230 (396)
++++||.-+
T Consensus 131 ~~~liVvDE 139 (773)
T PRK13766 131 DVSLLIFDE 139 (773)
T ss_pred hCcEEEEEC
Confidence 788777544
No 224
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=71.68 E-value=4.4 Score=45.07 Aligned_cols=15 Identities=20% Similarity=-0.008 Sum_probs=12.8
Q ss_pred ceeEEEecccccccc
Q psy3145 28 GLRVYVETEACPKAN 42 (396)
Q Consensus 28 ~l~~lViDEAh~~~~ 42 (396)
+-+++|+||||++..
T Consensus 272 ~wdlvIvDEAH~lk~ 286 (956)
T PRK04914 272 EWDLLVVDEAHHLVW 286 (956)
T ss_pred CCCEEEEechhhhcc
Confidence 568999999998874
No 225
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=71.63 E-value=8.2 Score=30.01 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=31.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
..+.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999999877778888899999995 778888864
No 226
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=71.06 E-value=8.6 Score=41.59 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC--CCceEE-----------EEEcCccHHHHHHH
Q psy3145 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG--KGGVSV-----------SMAGEVDRKLVKQV 269 (396)
Q Consensus 203 g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g--~~g~~i-----------~l~~~~e~~~~~~i 269 (396)
...+++.+-.++..|.|-|+|=.++-..-..|..+=.|.+||.-|.. +.|.-+ ++++..+...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34789999999999999999999999999999999999999988852 233322 46677777777777
Q ss_pred HHHcC
Q psy3145 270 IKNAK 274 (396)
Q Consensus 270 ~~~~~ 274 (396)
.+...
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 66543
No 227
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=70.64 E-value=6.3 Score=37.67 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=17.0
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL 117 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~ 117 (396)
+.++-..+| +..++..|||--...
T Consensus 201 vl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 201 VLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred HHHHHHhCC-CCcEEEecccccCCC
Confidence 345556676 455999999997655
No 228
>KOG0383|consensus
Probab=69.77 E-value=3.2 Score=44.14 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc---CCceEEEeeccc
Q psy3145 140 DRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD---EETDVLIATDVA 214 (396)
Q Consensus 140 ~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~---g~~~vLvaT~~~ 214 (396)
.|+.+|..++.... +++++||..-....+.+-.++...+ ....+.|..+-.+|+.+++.|.. ...-+|.||.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 35555666555443 6899999999999999999998888 88889999999999999999983 345588999988
Q ss_pred ccc
Q psy3145 215 ARG 217 (396)
Q Consensus 215 ~~G 217 (396)
|.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 876
No 229
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=69.49 E-value=4.9 Score=37.71 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=12.6
Q ss_pred ceeEEEecccccccc
Q psy3145 28 GLRVYVETEACPKAN 42 (396)
Q Consensus 28 ~l~~lViDEAh~~~~ 42 (396)
+-+++|+||+|.+.+
T Consensus 134 ~~~~vIvDEaH~~k~ 148 (299)
T PF00176_consen 134 KWDRVIVDEAHRLKN 148 (299)
T ss_dssp EEEEEEETTGGGGTT
T ss_pred cceeEEEeccccccc
Confidence 488999999998854
No 230
>KOG0329|consensus
Probab=68.57 E-value=12 Score=34.94 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec----c--cccccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD----V--AARGLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~----~--~~~Gidi~~ 222 (396)
.-.++|.|.|+.-|-.+.+..... +.++..+.||++-..-.+.+.. --.|+|+|+ + -.+.+++.+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhh
Confidence 347899999999998887755332 6789999999987666655554 457999998 2 245578888
Q ss_pred ccEEEEecCC-----CChhHHHHHHhhc
Q psy3145 223 VKTVINYRMP-----HSLEHYIHRVGRT 245 (396)
Q Consensus 223 v~~VI~~~~p-----~s~~~y~qr~GRa 245 (396)
+.+.+.-... .+...-+|.+=|.
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~ 213 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRM 213 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhc
Confidence 8876654433 2344556777664
No 231
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=68.30 E-value=34 Score=27.03 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=41.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC---CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLG---IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
...++++++++...++.....+.... ..+..+++........ ........++++|.-
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 45799999999999998888776554 7788888876554443 222345678888875
No 232
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=67.73 E-value=71 Score=29.40 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCCcEEEEeCC------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc---CCceEEEeecccccc
Q psy3145 153 FKDHTMIFVPT------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD---EETDVLIATDVAARG 217 (396)
Q Consensus 153 ~~~~~iIF~~t------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~G 217 (396)
..+.+||+.|. ...++.++..|+..|+.|. .+.+++..+-.+.++.|.+ ....++|+. .++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777763 4679999999999999986 6778899998899999975 233344333 56677
Q ss_pred cccCCccEEEEec-CCCChhHHHHHHh
Q psy3145 218 LDIRGVKTVINYR-MPHSLEHYIHRVG 243 (396)
Q Consensus 218 idi~~v~~VI~~~-~p~s~~~y~qr~G 243 (396)
.. +.++-.| .+-+....++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 6666666 5566777777775
No 233
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=67.73 E-value=17 Score=39.57 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=60.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-ccccc---------cc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-VAARG---------LD 219 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~G---------id 219 (396)
.+.++|+.++|++-+......|+.. ++++..++|+.+..+|..+ +. ..+|+|+|+ .+..+ ..
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~-~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----RE-HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc-CCCEEEEChHHHHHhhccchhHHHHH
Confidence 4568999999999999999888765 5788999999988776433 22 368999997 22212 12
Q ss_pred cCCccEEEEecCC-------CChhHHHHHHhhcc
Q psy3145 220 IRGVKTVINYRMP-------HSLEHYIHRVGRTA 246 (396)
Q Consensus 220 i~~v~~VI~~~~p-------~s~~~y~qr~GRag 246 (396)
+.++++||.=.+- ......+.|.-|..
T Consensus 155 l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~ 188 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLC 188 (742)
T ss_pred HhcCCEEEEeChhhccCccHHHHHHHHHHHHHHH
Confidence 5678887753322 23445566665543
No 234
>KOG0335|consensus
Probab=67.64 E-value=13 Score=37.90 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=51.7
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~ 224 (396)
..+||.++|++-|..++..-++. ++++...+|+.+- .....+-...++++|||+ ..++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~----~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL----GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch----hhhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 57899999999999998876654 5677888887332 223345556789999997 56666 7778888
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+++.
T Consensus 229 ~~vL 232 (482)
T KOG0335|consen 229 FLVL 232 (482)
T ss_pred EEEe
Confidence 6664
No 235
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=67.38 E-value=8.1 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=30.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 568999999977788888899999999777888874
No 236
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=66.53 E-value=7.8 Score=31.48 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC--ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI--KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~lhg~~~~ 190 (396)
.+.++++||++-..+...+..|...|+ ++..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 467899999998888899999999999 58999999744
No 237
>KOG1132|consensus
Probab=66.13 E-value=68 Score=35.17 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=64.5
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcC-------CceEEeeCCCCHHHHHHHHHHhhc--------CCceEEEeecccc
Q psy3145 151 RTFKDHTMIFVPTKREAHEMHILLGLLG-------IKAGELHGNLTQPSRLESLRKFKD--------EETDVLIATDVAA 215 (396)
Q Consensus 151 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~--------g~~~vLvaT~~~~ 215 (396)
+.-....|||+++-..-+.+...+...+ .+-. +-.--+..+=.+++..|.+ |-+-+.||=--.+
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 3334569999999887777755443321 1111 1111122223344444433 3345668888899
Q ss_pred cccccCC--ccEEEEecCCC--------------------------------------ChhHHHHHHhhcccCCCC-ceE
Q psy3145 216 RGLDIRG--VKTVINYRMPH--------------------------------------SLEHYIHRVGRTARAGKG-GVS 254 (396)
Q Consensus 216 ~Gidi~~--v~~VI~~~~p~--------------------------------------s~~~y~qr~GRagR~g~~-g~~ 254 (396)
+|+|+.+ .+.||..++|. .....-|.+||+-|..++ |.+
T Consensus 637 EGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav 716 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAV 716 (945)
T ss_pred CCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhccccee
Confidence 9999974 45899988762 123455899999998877 555
Q ss_pred EEEEc
Q psy3145 255 VSMAG 259 (396)
Q Consensus 255 i~l~~ 259 (396)
+ |++
T Consensus 717 ~-l~D 720 (945)
T KOG1132|consen 717 I-LCD 720 (945)
T ss_pred e-Eee
Confidence 5 554
No 238
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.66 E-value=28 Score=29.15 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccc
Q psy3145 142 KALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLD 219 (396)
Q Consensus 142 ~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 219 (396)
...++.|+.+. .+.+++|+|.+...++.+-+.|-...-....-|+-.... ......|+|+++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 46666766543 378999999999999999999977755555555532111 112247999887532 22
Q ss_pred cCCccEEEEecCC
Q psy3145 220 IRGVKTVINYRMP 232 (396)
Q Consensus 220 i~~v~~VI~~~~p 232 (396)
.+..+++||.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 3347899998644
No 239
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=64.61 E-value=22 Score=38.87 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHH----HhcCCceEEeeCCCC-HHHHHHHHHHhhcCCceEEEeec
Q psy3145 145 LAALVCRTFKDHTMIFVPTKREAHEMHILL----GLLGIKAGELHGNLT-QPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 145 l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~lhg~~~-~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+..++....+..+.|.++|..-|.+.++.+ ...|++++.+.|+++ +.+|.... ..+|+++|+
T Consensus 110 lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 110 MPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 344445566889999999988877766665 445999999999999 87777442 267999985
No 240
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=64.54 E-value=9.7 Score=30.10 Aligned_cols=38 Identities=8% Similarity=-0.027 Sum_probs=31.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc--eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK--AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~--~~~lhg~~~~ 190 (396)
.+.++++||.+-..+...+..|...|+. +..+.||++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3568999999987787788999999994 7889999754
No 241
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=64.06 E-value=9.3 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=31.0
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVP-TKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~-t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.+.+++|||+ +-..+...+..|+..|+++..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4678999997 4566778888888889999999999754
No 242
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=63.99 E-value=62 Score=29.81 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCCcEEEEeCC-----------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC----CceEEEeecccccc
Q psy3145 153 FKDHTMIFVPT-----------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE----ETDVLIATDVAARG 217 (396)
Q Consensus 153 ~~~~~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~G 217 (396)
+.+-+||+.|. ...++.|++.|+..|+.|. ++-+++..+-.+.++.|... ..+++|+. .++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 45677888875 4589999999999999986 57779999999999999763 34555554 66777
Q ss_pred cccCCccEEEEecC-CCChhHHHHHH
Q psy3145 218 LDIRGVKTVINYRM-PHSLEHYIHRV 242 (396)
Q Consensus 218 idi~~v~~VI~~~~-p~s~~~y~qr~ 242 (396)
. .+.++-.|- +-+........
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 356665554 44566666655
No 243
>KOG0334|consensus
Probab=63.72 E-value=19 Score=39.79 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=46.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
.=+||.++|+..+..+.+.++. .|+++.+.+|+....+ .+...+.| ..|+|||+ |+-||+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~---qiaelkRg-~eIvV~tp--GRmiD~ 502 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ---QIAELKRG-AEIVVCTP--GRMIDI 502 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH---HHHHHhcC-CceEEecc--chhhhh
Confidence 3469999999999988887654 4899999999876654 45666778 78999998 555555
No 244
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.60 E-value=11 Score=29.82 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCcEEEEeCCh--HHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTK--REAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~--~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.+.++++||++- ..+..++..|...|+++..+.||+..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 367899999975 36788888999999998889998743
No 245
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=63.15 E-value=28 Score=38.42 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChH----HHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKR----EAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~----~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
-...+..++....+.++-|.+.+.- .++.+...+...|+.+.++.|++++.+|..++. .+|+.+|.. .-
T Consensus 110 LvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~-e~ 182 (913)
T PRK13103 110 LVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN-EF 182 (913)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc-cc
Confidence 3455666666777888988888854 455566666677999999999999999998887 688888874 34
Q ss_pred ccccC
Q psy3145 217 GLDIR 221 (396)
Q Consensus 217 Gidi~ 221 (396)
|.|.-
T Consensus 183 gFDYL 187 (913)
T PRK13103 183 GFDYL 187 (913)
T ss_pred ccchh
Confidence 55653
No 246
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=62.95 E-value=11 Score=29.26 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||++-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 3678999999988888889999999985 7788898754
No 247
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=62.88 E-value=13 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=30.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~ 189 (396)
.+.++++||++-..+...+..|...|+ .+..+.||+.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 357899999998888889999988887 5777899864
No 248
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=62.86 E-value=27 Score=40.82 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh----------------cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc----
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL----------------LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV---- 213 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~----------------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~---- 213 (396)
+.++|+.++++.-+..+.+.|+. .++++...||+.+..+|.+.++ ...+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 45899999999999888887642 3678999999999998876443 35689999982
Q ss_pred -c-ccc-cccCCccEEEEec
Q psy3145 214 -A-ARG-LDIRGVKTVINYR 230 (396)
Q Consensus 214 -~-~~G-idi~~v~~VI~~~ 230 (396)
+ ..+ ..+.++++||.=+
T Consensus 113 LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 113 MLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred HHhhhhhhhhccCCEEEEec
Confidence 2 222 3578899888644
No 249
>KOG4284|consensus
Probab=62.25 E-value=3.1 Score=43.49 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=24.6
Q ss_pred ccceeEEEeccccccccC-CCCCCce-EEeCCcc
Q psy3145 26 VEGLRVYVETEACPKANL-GWYPQTA-IVPNLPR 57 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~-gf~~~~~-Iv~t~~~ 57 (396)
+.++|++|+||||.+.+- +|..++. |+...|.
T Consensus 165 ~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 165 MSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ccceeEEEeccHHhhhchhhHHHHHHHHHHhcch
Confidence 558999999999999994 4777776 4455554
No 250
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=61.83 E-value=14 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.8
Q ss_pred CCcEEEEeCC--hHHHHHHHHHHHhcCC-ceEEeeCCCC
Q psy3145 154 KDHTMIFVPT--KREAHEMHILLGLLGI-KAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t--~~~~~~l~~~L~~~~~-~~~~lhg~~~ 189 (396)
+.++++||.+ +..+...+..|...|+ ++..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999999 4557788888988887 5778888874
No 251
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=61.82 E-value=57 Score=33.83 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=49.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccc-cccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAA-RGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~v 223 (396)
+.++||.++|+.-|..+...++.. ++++..+.||.+..+.. ..++. ..+|+|+|+ .+. .++++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 457999999999998877766543 46677777776544332 23333 368999996 333 35778888
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
.+||.=+
T Consensus 272 ~~lViDE 278 (518)
T PLN00206 272 SVLVLDE 278 (518)
T ss_pred eEEEeec
Confidence 8777543
No 252
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=61.70 E-value=49 Score=36.75 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
+.+++|.++|+.-|.+.++.+... |+++.++.||++..++...+ ..+|+++|+- ..|.|+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg-RLgfDy 198 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS-EFGFDY 198 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC-hhHHHH
Confidence 446888899999999888887653 78999999999998876443 2689999983 344564
No 253
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=61.60 E-value=11 Score=29.42 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||++-..+...+..|...|++ +..+.||+.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 3578999999988888999999999985 777788864
No 254
>PRK02362 ski2-like helicase; Provisional
Probab=61.02 E-value=27 Score=38.00 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGV 223 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v 223 (396)
.++++|+.++++.-|.+.+..++.. |+++..++|+.+.... . -+..+|+|||+ .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 4679999999999999999888765 8899999998765431 1 24568999996 22222 235678
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
++||.-+
T Consensus 139 ~lvViDE 145 (737)
T PRK02362 139 TCVVVDE 145 (737)
T ss_pred CEEEEEC
Confidence 8877533
No 255
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.96 E-value=1e+02 Score=26.02 Aligned_cols=71 Identities=30% Similarity=0.428 Sum_probs=44.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC-----CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG-----IKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~ 222 (396)
..++++.+++...+..+...+.... .....+++... ......+..+...++++|. ....+ .+...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 4689999999998888888776554 33444555432 3344555666668999983 33332 35555
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
++++|.
T Consensus 130 ~~~iIi 135 (201)
T smart00487 130 VDLVIL 135 (201)
T ss_pred CCEEEE
Confidence 666554
No 256
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=60.83 E-value=60 Score=27.32 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 138 HLDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
...+...++.|+.+.. +.+++|+|.+...++.+-+.|-...-....=||-.... ......|+|+..
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~--- 78 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWP--- 78 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcC---
Confidence 3457888888886544 78999999999999999999977654545556532211 012457888721
Q ss_pred cccccCCccEEEEecC
Q psy3145 216 RGLDIRGVKTVINYRM 231 (396)
Q Consensus 216 ~Gidi~~v~~VI~~~~ 231 (396)
..-+.++.+++||.+.
T Consensus 79 ~~~~~~~~~~LinL~~ 94 (142)
T PRK05728 79 GKRNANHRDLLINLDG 94 (142)
T ss_pred CCCCCCCCcEEEECCC
Confidence 1124456678888763
No 257
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=60.82 E-value=15 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
+.+++++|.+-..+...+..|...|+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 568999999877888888899999985 778889874
No 258
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=60.22 E-value=20 Score=28.54 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||++-..+..++..|...|+. +..+.||+.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4678999999988888999999999984 777888763
No 259
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=59.56 E-value=11 Score=29.19 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
...+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~ 98 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKD 98 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHH
Confidence 3578999998877788888999999986 7788888643
No 260
>KOG0340|consensus
Probab=59.44 E-value=20 Score=34.98 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 144 ~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+|..+-....+.-++||++|++-+-++++.|... +.++..+.||++.-.....+ ..+-.++|+|+
T Consensus 65 il~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 65 ILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred HHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 3444434444567899999999999999988654 57899999998765443332 23456777776
No 261
>PLN02955 8-amino-7-oxononanoate synthase
Probab=58.84 E-value=51 Score=33.83 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=31.3
Q ss_pred CcEE-EEeCChHHHHHHHHHHHhcCCceEE----------------eeCCCCHHHHHHHHHHhh
Q psy3145 155 DHTM-IFVPTKREAHEMHILLGLLGIKAGE----------------LHGNLTQPSRLESLRKFK 201 (396)
Q Consensus 155 ~~~i-IF~~t~~~~~~l~~~L~~~~~~~~~----------------lhg~~~~~~r~~~~~~f~ 201 (396)
.+++ |++.+...+..+++.|.+.|+-+.. +++.-+.++-...++.+.
T Consensus 393 sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~ 456 (476)
T PLN02955 393 SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALS 456 (476)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHH
Confidence 4444 6678888899999999999875532 445555555555555553
No 262
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=58.12 E-value=35 Score=37.39 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHH----HhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccc
Q psy3145 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILL----GLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLD 219 (396)
Q Consensus 144 ~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 219 (396)
.+..++....+..+-|.++|.--|.+-++.+ ...|+++..+.|+++..+|...+. .+|+++|+. .-|.|
T Consensus 112 ~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~-elgfD 184 (830)
T PRK12904 112 TLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN-EFGFD 184 (830)
T ss_pred HHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc-chhhh
Confidence 3444445556667889999986666655554 456999999999999999888754 678999873 34455
Q ss_pred c
Q psy3145 220 I 220 (396)
Q Consensus 220 i 220 (396)
.
T Consensus 185 y 185 (830)
T PRK12904 185 Y 185 (830)
T ss_pred h
Confidence 4
No 263
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=57.31 E-value=16 Score=27.73 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.+++|+|++-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4678999999999999999999999984 777888763
No 264
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=55.08 E-value=14 Score=28.81 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=43.9
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHH------------HHHHHHHHhhcCCceEEEeeccccccccc
Q psy3145 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQP------------SRLESLRKFKDEETDVLIATDVAARGLDI 220 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~------------~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 220 (396)
.||.+.....+..++..|...+..+....|.+-.. .+.+.+.+.-.+--.|++|||.-..|--+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 47889999999999999875556777777765322 12444555545566899999987777544
No 265
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=54.68 E-value=26 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCcEEEEeCC-hHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPT-KREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t-~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||++ -..+...+..|...|++ +..+.||+..
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 46789999999 47788888899999976 8888888743
No 266
>PRK05320 rhodanese superfamily protein; Provisional
Probab=53.95 E-value=25 Score=32.88 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQP 191 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 191 (396)
.+.++++||.+=.+++..+..|...|+. +..+.||+..-
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w 213 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKY 213 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHH
Confidence 5678999999999999999999999995 88899998553
No 267
>KOG0346|consensus
Probab=53.76 E-value=6.6 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred hcccceeEEEeccccccccCCCCCCce-EEeCCc
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTA-IVPNLP 56 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~ 56 (396)
..+..+.+||+||||-++..||..+.. +..-.|
T Consensus 166 ~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP 199 (569)
T KOG0346|consen 166 EYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP 199 (569)
T ss_pred hhhhheeeEEechhhhhhhcccHHHHHHHHHhCC
Confidence 566789999999999999999877654 333334
No 268
>KOG0350|consensus
Probab=52.32 E-value=35 Score=34.89 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCH-HHHHHHHHHhhcCCceEEEeecc-------cccccccC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQ-PSRLESLRKFKDEETDVLIATDV-------AARGLDIR 221 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~-~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gidi~ 221 (396)
.-+++|.++|+.-+-.++..+... |+.|..+.|.-+- .|..+....-....++|||+|+. .-.|+|+.
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk 294 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK 294 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh
Confidence 358999999999999999988765 6666766665332 22233333334456799999983 25688888
Q ss_pred CccEEEEec
Q psy3145 222 GVKTVINYR 230 (396)
Q Consensus 222 ~v~~VI~~~ 230 (396)
+.++.|.-.
T Consensus 295 ~LrfLVIDE 303 (620)
T KOG0350|consen 295 HLRFLVIDE 303 (620)
T ss_pred hceEEEech
Confidence 888766533
No 269
>PTZ00424 helicase 45; Provisional
Probab=51.06 E-value=89 Score=30.78 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~v 223 (396)
..++||+++++.-+.++.+.+... +..+....|+....+. .+.+..+ .+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCcccccc
Confidence 568999999999998888877654 4566677787665432 3344443 5799999722 224567788
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
++||.=+
T Consensus 172 ~lvViDE 178 (401)
T PTZ00424 172 KLFILDE 178 (401)
T ss_pred cEEEEec
Confidence 8877544
No 270
>PRK13767 ATP-dependent helicase; Provisional
Probab=50.54 E-value=52 Score=36.61 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=50.0
Q ss_pred CcEEEEeCChHHHHHHHHHHH---------------hc-CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-c--
Q psy3145 155 DHTMIFVPTKREAHEMHILLG---------------LL-GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-A-- 215 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~---------------~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~-- 215 (396)
.++|+.++++.-+..++..|. .. ++++...||+.++.++...+. ...+|+|+|+-. .
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHH
Confidence 469999999999887766442 11 567899999999988876554 356899999821 1
Q ss_pred --c-c--cccCCccEEEEec
Q psy3145 216 --R-G--LDIRGVKTVINYR 230 (396)
Q Consensus 216 --~-G--idi~~v~~VI~~~ 230 (396)
. . -.+.++++||.-.
T Consensus 161 l~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred hcChhHHHHHhcCCEEEEec
Confidence 1 1 1356788887533
No 271
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=50.00 E-value=16 Score=41.18 Aligned_cols=15 Identities=27% Similarity=0.111 Sum_probs=12.0
Q ss_pred eeEEEeccccccccC
Q psy3145 29 LRVYVETEACPKANL 43 (396)
Q Consensus 29 l~~lViDEAh~~~~~ 43 (396)
-++||+||||++.+.
T Consensus 292 W~~VIvDEAHrIKN~ 306 (1033)
T PLN03142 292 WRYIIIDEAHRIKNE 306 (1033)
T ss_pred CCEEEEcCccccCCH
Confidence 468999999987763
No 272
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=49.46 E-value=17 Score=40.46 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=54.9
Q ss_pred CceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC--CC-----ce--EE-EEEcCccHHHHHHHHHHc
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG--KG-----GV--SV-SMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g--~~-----g~--~i-~l~~~~e~~~~~~i~~~~ 273 (396)
.++++++-+++..|.|.|++-.++-..-..|...-.|.+||.-|.- +. +. .. +++++....+...+.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999999998899999999999988852 11 21 12 345566667777766655
Q ss_pred C
Q psy3145 274 K 274 (396)
Q Consensus 274 ~ 274 (396)
.
T Consensus 581 ~ 581 (986)
T PRK15483 581 N 581 (986)
T ss_pred H
Confidence 3
No 273
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=49.13 E-value=49 Score=27.90 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=32.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
.+.+++|+|.+-..+...+..|...|+ ++..+.||+..
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 357899999998888888989998888 78999999643
No 274
>PRK00254 ski2-like helicase; Provisional
Probab=46.90 E-value=82 Score=34.14 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=50.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~ 224 (396)
+.++|+.++++.-+.+.+..+.. .|+++..++|+.+...+. .+..+|+|+|+ .+..+ ..+.+++
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhh-------hccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 57899999999999999877753 488999999998754321 24578999995 22222 3457888
Q ss_pred EEEEec
Q psy3145 225 TVINYR 230 (396)
Q Consensus 225 ~VI~~~ 230 (396)
+||.=+
T Consensus 141 lvViDE 146 (720)
T PRK00254 141 LVVADE 146 (720)
T ss_pred EEEEcC
Confidence 877533
No 275
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=46.24 E-value=36 Score=27.00 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.++++||++-..+...+..|...|+....+.||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 467999999988888899999999987666678754
No 276
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=46.22 E-value=2.3e+02 Score=27.11 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhhc-------CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHH------------H
Q psy3145 139 LDRKALLAALVCRT-------FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR------------K 199 (396)
Q Consensus 139 ~~k~~~l~~ll~~~-------~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~------------~ 199 (396)
..|+..|..++... .+.+++|.++..+..+.+-.+|...++.+.-+.|.+...+....-. .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 46888888877544 2468999999999999999999888888888888765544433220 0
Q ss_pred h-hcC--CceEEEeecc-cccc----cccCCccEEEEecCCCCh-hHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 200 F-KDE--ETDVLIATDV-AARG----LDIRGVKTVINYRMPHSL-EHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 200 f-~~g--~~~vLvaT~~-~~~G----idi~~v~~VI~~~~p~s~-~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
. ..+ ...+-++|+. +... .+-..++.||-||.-.++ ...+|++=..+|.++...++.++.....+
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nSiE 248 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNSIE 248 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTSHH
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCCHH
Confidence 0 111 2334444443 3331 333477899999976443 24556664445544556677776654443
No 277
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=45.51 E-value=31 Score=27.74 Aligned_cols=38 Identities=3% Similarity=-0.009 Sum_probs=31.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
...++++||++-..+...+..|...|+. +..+.||+..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4678999999988888999999999985 6668888754
No 278
>COG1204 Superfamily II helicase [General function prediction only]
Probab=45.33 E-value=74 Score=34.79 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=57.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHH---hcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec----cccc--ccccCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLG---LLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD----VAAR--GLDIRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~---~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~----~~~~--Gidi~~v~ 224 (396)
+++++--|+++.-|++.++.++ ..|++|..++|++..... .-++.+|+|+|+ .+-| +.-+..|+
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~ 148 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPEKLDSLTRKRPSWIEEVD 148 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchHHhhHhhhcCcchhhccc
Confidence 4699999999999999999888 779999999999764321 124568999997 2222 22245788
Q ss_pred EEEEecC-----C---CChhHHHHHHh
Q psy3145 225 TVINYRM-----P---HSLEHYIHRVG 243 (396)
Q Consensus 225 ~VI~~~~-----p---~s~~~y~qr~G 243 (396)
+||.=++ + +..+..+.|.=
T Consensus 149 lvViDEiH~l~d~~RG~~lE~iv~r~~ 175 (766)
T COG1204 149 LVVIDEIHLLGDRTRGPVLESIVARMR 175 (766)
T ss_pred EEEEeeeeecCCcccCceehhHHHHHH
Confidence 7775332 2 24556666553
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=44.95 E-value=33 Score=29.64 Aligned_cols=32 Identities=6% Similarity=-0.101 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRP 122 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~ 122 (396)
+++.++++..|.+.-+++.+-.+|+++..+.|
T Consensus 116 ~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 116 EEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 46778889999999999999999988854444
No 280
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=44.68 E-value=9.5 Score=37.38 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.2
Q ss_pred hcccceeEEEecccccccc
Q psy3145 24 KEVEGLRVYVETEACPKAN 42 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~ 42 (396)
......+++||||||++..
T Consensus 79 ~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 79 KEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ccCCcCCEEEEehhHhhhh
Confidence 4456789999999999888
No 281
>PRK01172 ski2-like helicase; Provisional
Probab=44.43 E-value=90 Score=33.50 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=48.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-cccCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-LDIRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-idi~~v~ 224 (396)
+.++|+.++++.-|.+.++.+.. .|.++...+|+.+...+. + +..+++|+|+- +.++ ..+.+++
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-----~--~~~dIiv~Tpek~~~l~~~~~~~l~~v~ 137 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDF-----I--KRYDVVILTSEKADSLIHHDPYIINDVG 137 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhh-----h--ccCCEEEECHHHHHHHHhCChhHHhhcC
Confidence 56899999999999998887753 478888899987653221 1 24589999982 2222 3367788
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 138 lvVi 141 (674)
T PRK01172 138 LIVA 141 (674)
T ss_pred EEEE
Confidence 8775
No 282
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=44.37 E-value=1.4e+02 Score=26.13 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEE
Q psy3145 143 ALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLI 209 (396)
Q Consensus 143 ~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLv 209 (396)
+++..++... .+.++-++-.+...++.+++.|+.. |+.+...||-.++.+...+.+..+....++|+
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 4455555432 2346666667777788899999876 67766679999888888888888766655543
No 283
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=43.90 E-value=2.8e+02 Score=26.12 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=74.0
Q ss_pred EEEEecCChhhHHHHHHHHHh--hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceE
Q psy3145 130 CFRIRKDTHLDRKALLAALVC--RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207 (396)
Q Consensus 130 ~~~~~~~~~~~k~~~l~~ll~--~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 207 (396)
++..+.+-...-...+..++. ..+.-++|||++...-.-...+.+++..-.+..+.|..... -.++.. ..++
T Consensus 36 h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ED--p~~i~~----~aDi 109 (275)
T PF12683_consen 36 HVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHED--PEVISS----AADI 109 (275)
T ss_dssp EEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHH----HSSE
T ss_pred EEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCC--HHHHhh----ccCe
Confidence 333433323344445555543 34456999999999988888888888888888888864332 223332 3578
Q ss_pred EEeecccccccccC------CccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCcccc
Q psy3145 208 LIATDVAARGLDIR------GVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRI 281 (396)
Q Consensus 208 LvaT~~~~~Gidi~------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~ 281 (396)
.+.++...+|..++ +++..|||.+|.+.. |..-.-| +..+++-++.++.++....
T Consensus 110 ~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms-~~~l~~R------------------r~~M~~~C~~lGi~fv~~t 170 (275)
T PF12683_consen 110 VVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS-YELLARR------------------RDIMEEACKDLGIKFVEVT 170 (275)
T ss_dssp EEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG-SHHHHHH------------------HHHHHHHHHHCT--EEEEE
T ss_pred EeccchhhccHHHHHHHHHcCCceEEEEechhhcc-hHHHHHH------------------HHHHHHHHHHcCCeEEEEe
Confidence 99999999998885 788999999998776 4332222 2456667777777766655
Q ss_pred CCC
Q psy3145 282 IPP 284 (396)
Q Consensus 282 ~~~ 284 (396)
.|.
T Consensus 171 aPD 173 (275)
T PF12683_consen 171 APD 173 (275)
T ss_dssp E--
T ss_pred CCC
Confidence 554
No 284
>PRK01415 hypothetical protein; Validated
Probab=43.82 E-value=42 Score=31.26 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=34.2
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHH
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQP 191 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 191 (396)
..+.++++||.+=..|+..+..|...|+. +..+.||+..-
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQY 209 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHH
Confidence 34678999999999999999999999996 78889987544
No 285
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=43.81 E-value=1.8e+02 Score=32.38 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChHH----HHHHHHHHHhcC--CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKRE----AHEMHILLGLLG--IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV- 213 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~~----~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~- 213 (396)
-+.++..++. ....+.|++.+|++- ++++.+++...+ +.+..|+|+.++.+|. .+..+..+||++|+-
T Consensus 103 llPIld~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdM 177 (851)
T COG1205 103 LLPILDHLLR-DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDM 177 (851)
T ss_pred HHHHHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHH
Confidence 3444555553 334588999999865 456666666666 8899999999999987 444567889988762
Q ss_pred c----ccccc-----cCCccEEEEec-------CCCChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 214 A----ARGLD-----IRGVKTVINYR-------MPHSLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 214 ~----~~Gid-----i~~v~~VI~~~-------~p~s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
+ -+..| ....++||.=. +=.++.-.+-|..|-.|.+.....+++.+
T Consensus 178 Lh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 178 LHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred HHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 2 22222 23455555422 22466677777777666554444454444
No 286
>PLN02160 thiosulfate sulfurtransferase
Probab=43.26 E-value=36 Score=28.35 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||.+=..+...+..|...|+. +..+.||+..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4578999999999999999999999985 7778888654
No 287
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=42.80 E-value=48 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLT 189 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~ 189 (396)
....++|+||.+-..+..++..|...|+ ++..+-||+.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4467999999998899999999999975 4667778764
No 288
>KOG0328|consensus
Probab=41.11 E-value=7 Score=36.92 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.5
Q ss_pred cceeEEEeccccccccCCCCCC
Q psy3145 27 EGLRVYVETEACPKANLGWYPQ 48 (396)
Q Consensus 27 ~~l~~lViDEAh~~~~~gf~~~ 48 (396)
+.+.++|+||||.+++.||..+
T Consensus 168 r~vkmlVLDEaDemL~kgfk~Q 189 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFKEQ 189 (400)
T ss_pred cceeEEEeccHHHHHHhhHHHH
Confidence 3689999999999999996543
No 289
>KOG0949|consensus
Probab=41.01 E-value=26 Score=38.79 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=16.0
Q ss_pred hcccceeEEEeccccccccC
Q psy3145 24 KEVEGLRVYVETEACPKANL 43 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~ 43 (396)
....++|++|+||.|.++..
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ 647 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNE 647 (1330)
T ss_pred hhhhcceEEEechhhhcccc
Confidence 34567999999999987763
No 290
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=40.76 E-value=1.4e+02 Score=32.48 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHH----HhcCCceEEeeCC-----CCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 145 LAALVCRTFKDHTMIFVPTKREAHEMHILL----GLLGIKAGELHGN-----LTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 145 l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~lhg~-----~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+..++....+..++|.+++..-|.+.++.+ ...|+.+...+++ +.+.+|..+. ..+|+++|+
T Consensus 102 Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp 172 (762)
T TIGR03714 102 MPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTN 172 (762)
T ss_pred HHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECc
Confidence 333444455678999999998888877777 5568888887664 5555554332 367888887
No 291
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=40.53 E-value=1.1e+02 Score=21.99 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=37.5
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
.++.|.....+..+..... .+..+....|.....+....+..+... ..|++++|.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~-~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGG-FGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcC-CCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5778888888877777653 223455555655555556666665544 5688988854444
No 292
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=40.15 E-value=49 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.+++++|++-..+...+..|...|+.....-||+.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 467899999988888889999999987554457753
No 293
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=39.87 E-value=33 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHhcCCceEE----eeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 171 HILLGLLGIKAGE----LHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 171 ~~~L~~~~~~~~~----lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
+++|++.|+.+.. .+.+-.+.-+..+++.+++|+++++|.|..
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 3667788888333 232212333447899999999887777653
No 294
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=39.74 E-value=1.2e+02 Score=33.36 Aligned_cols=76 Identities=14% Similarity=-0.020 Sum_probs=42.4
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhhhccCCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHH
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFLFLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHI 172 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~~~l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~ 172 (396)
|-++.+.-.+..=+.+|||.+.... .-+.-+...++...-.++.++......+ ..
T Consensus 52 I~rlyr~~n~~gfIkafSdsP~~~~----------------------~g~~~l~~vmk~L~i~~v~l~prf~~~V---~~ 106 (814)
T TIGR00596 52 ILRLYRQKNKTGFIKAFSDNPEAFT----------------------MGFSPLETKMRNLFLRHVYLWPRFHVEV---AS 106 (814)
T ss_pred HHHHHHHhCCCcceEEecCCCcccc----------------------cchHHHHHHHHHhCcCeEEEeCCCchHH---HH
Confidence 4566676677777999999877422 0112233334444445566665555433 34
Q ss_pred HHHhcCCceEEeeCCCCHHHH
Q psy3145 173 LLGLLGIKAGELHGNLTQPSR 193 (396)
Q Consensus 173 ~L~~~~~~~~~lhg~~~~~~r 193 (396)
+|......+..+|=.|++.-+
T Consensus 107 ~l~~~~~~V~ei~V~l~~~m~ 127 (814)
T TIGR00596 107 SLEKHKAEVIELHVSLTDSMS 127 (814)
T ss_pred HhccCCCeEEEEEeCCCHHHH
Confidence 444444567777777766543
No 295
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=39.68 E-value=64 Score=27.79 Aligned_cols=39 Identities=3% Similarity=-0.165 Sum_probs=30.5
Q ss_pred cCCCcEEEEeCChH-HHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 152 TFKDHTMIFVPTKR-EAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 152 ~~~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
..+.++|+||.+-. .+...+..|...|+. |..+.||+..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 35679999999853 567788888999986 7778898753
No 296
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=39.19 E-value=43 Score=25.48 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
+++|++.|+.+..+|..... .+..+.+.+++|+++++|.|..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 45667788887544443322 1235889999999998888763
No 297
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.08 E-value=1.6e+02 Score=24.99 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=37.1
Q ss_pred cEEEEeCC-------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhh
Q psy3145 156 HTMIFVPT-------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK 201 (396)
Q Consensus 156 ~~iIF~~t-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 201 (396)
+++||+.| ...+..+..+|...++.+....=+|....+.++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 46777776 78899999999999999888887788887887666543
No 298
>KOG0345|consensus
Probab=38.85 E-value=70 Score=32.61 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=52.0
Q ss_pred cEEEEeCChHHHHHHHHHHHh-----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc---ccccCC
Q psy3145 156 HTMIFVPTKREAHEMHILLGL-----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR---GLDIRG 222 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~---Gidi~~ 222 (396)
-.+|.++|++-|..+.+.+.. ..+.+..+-||.+.+ +-+..|+....+|||+|+ .+.+ ++|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 469999999988877765533 367889999996654 456778888889999998 3333 466667
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
++++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 777775
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=37.85 E-value=81 Score=23.33 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=23.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIK-AGELHG 186 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg 186 (396)
+.++++.+.|+..++.+.+.| ..+.. +..+|+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 678999999999999999988 32333 444443
No 300
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=37.68 E-value=34 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceE-EeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAG-ELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~-~lhg~~~~ 190 (396)
.+.+++|+|.+-......+..|...|+... .+.||+..
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~ 98 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDA 98 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHH
Confidence 467899999999999999999999998876 77777643
No 301
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.37 E-value=47 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.+++++|.+-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 3568999999888888888899999986 7778888743
No 302
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.24 E-value=2e+02 Score=24.85 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc--CCceE-EeeCCCCHHHHHHHHHHhhcCCceEEE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL--GIKAG-ELHGNLTQPSRLESLRKFKDEETDVLI 209 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vLv 209 (396)
+.++-++-.+...++.++..|+.. ++.+. .+||-++..+...+++..+....++|+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 456777777778889999999887 66665 455668888889999988877666554
No 303
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=36.81 E-value=49 Score=25.56 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCcEEEEeCChHHHHHHHHH-----HHhcCC-ceEEeeCCCCH
Q psy3145 154 KDHTMIFVPTKREAHEMHIL-----LGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~-----L~~~~~-~~~~lhg~~~~ 190 (396)
..++|+||++-......+.. |...|+ ++..+.||+..
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 45789999666665555555 777788 88889898653
No 304
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=36.80 E-value=87 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred CCCcEEEEeCC---hHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPT---KREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t---~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++|+||.+ -..+-+++-.|+..|+. +..|.|+++
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 36799999986 34455666677778875 778888864
No 305
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=36.26 E-value=2.8e+02 Score=25.08 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCC-CcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHh
Q psy3145 141 RKALLAALVCRTFK-DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200 (396)
Q Consensus 141 k~~~l~~ll~~~~~-~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 200 (396)
..+....+.....+ ..+.||+|. ..+.+.+.+...++.+.-+||..+++.-..+-...
T Consensus 39 s~~~a~~i~~~v~~~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 39 SPEQAREIASAVPKVKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CHHHHHHHHHhCCCCCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 44555555555543 578899887 44667777777789999999999887766655554
No 306
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=35.57 E-value=51 Score=26.74 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.3
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhc------------CC-ceEEeeCCCC
Q psy3145 153 FKDHTMIFVP-TKREAHEMHILLGLL------------GI-KAGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~-t~~~~~~l~~~L~~~------------~~-~~~~lhg~~~ 189 (396)
.+.+++++|. +-..+...+..|... |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4678999997 777777788888764 65 6888889865
No 307
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.33 E-value=2.3e+02 Score=24.48 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=41.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc--CCceEE-eeCCCCHHHHHHHHHHhhcCCceEEE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL--GIKAGE-LHGNLTQPSRLESLRKFKDEETDVLI 209 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~-lhg~~~~~~r~~~~~~f~~g~~~vLv 209 (396)
+.++-++-.+...++.+.+.|+.. |+.+.. +||-+...+...+++..+....++++
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 457777777788888888888777 666655 67888877777788888776666554
No 308
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=34.77 E-value=65 Score=31.12 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=34.1
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHH
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQP 191 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 191 (396)
..+.++++||.+-..+...+.+|...|++ +..+.||+..-
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w 209 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITY 209 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHH
Confidence 35679999999988899999999999995 88899997653
No 309
>KOG0342|consensus
Probab=34.66 E-value=96 Score=31.74 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh----c-CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL----L-GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~----~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+-.+||.|+|+.-|-+++..+++ . ++.+..+-||-... .-.++..+ .+++||||+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhc-cccEEEeCC
Confidence 45789999999988777665543 3 67778777875432 22334444 689999998
No 310
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=34.39 E-value=3.3e+02 Score=24.09 Aligned_cols=86 Identities=16% Similarity=-0.014 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEE-eec-ccccccccCCccEEEEecCCCChhHHHHHH
Q psy3145 165 REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLI-ATD-VAARGLDIRGVKTVINYRMPHSLEHYIHRV 242 (396)
Q Consensus 165 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLv-aT~-~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~ 242 (396)
.-|..+.+++.+.|.+..+.-|+++... ...+.+|.. +|+ -+-..+...++.....++.|..+...+.
T Consensus 34 e~a~~vld~a~~~gv~~iitLgG~~~~~--------~~trp~V~~~at~~el~~~l~~~g~~~~~~~g~i~G~~glLl-- 103 (188)
T TIGR00162 34 ELVNAIIDVAKKYGARMIYTLGGYGVGK--------LVEEPYVYGAATSPELVEELKEHGVKFREPGGGIIGASGLLL-- 103 (188)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCCC--------CCCCCceEEEeCCHHHHHHHHhcCCeeecCCCccccHHHHHH--
Confidence 4567777788888886655555554321 111223332 232 1222333323333334666766666554
Q ss_pred hhcccCCCCceEEEEEcC
Q psy3145 243 GRTARAGKGGVSVSMAGE 260 (396)
Q Consensus 243 GRagR~g~~g~~i~l~~~ 260 (396)
+++++.|-++.|++.-++
T Consensus 104 ~~a~~~gi~ai~L~~e~p 121 (188)
T TIGR00162 104 GVSELEGIPGACLMGETP 121 (188)
T ss_pred HHHHHCCCCeEEEEEeCC
Confidence 445667778888877654
No 311
>KOG0351|consensus
Probab=33.90 E-value=84 Score=35.13 Aligned_cols=119 Identities=23% Similarity=0.279 Sum_probs=74.7
Q ss_pred cEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC--CceEEEeecc---cccc-----cccCC---
Q psy3145 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE--ETDVLIATDV---AARG-----LDIRG--- 222 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~~---~~~G-----idi~~--- 222 (396)
-+||-.+=..-.+.....|...++.+.+++|+++..+|..+++.+.+| .+++|--|+- ...| -++..
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~ 385 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGL 385 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCe
Confidence 456666667777777777888899999999999999999999999999 8888877762 1222 22333
Q ss_pred -ccEEEE-------ecCCCChhHHHHHHhhcccCCCCceE-EEEEcCccHHHHHHHHHHcCCCC
Q psy3145 223 -VKTVIN-------YRMPHSLEHYIHRVGRTARAGKGGVS-VSMAGEVDRKLVKQVIKNAKNPV 277 (396)
Q Consensus 223 -v~~VI~-------~~~p~s~~~y~qr~GRagR~g~~g~~-i~l~~~~e~~~~~~i~~~~~~~~ 277 (396)
..+||. |+ .+...-+.+.|=. |....+.. +-+.........+.+.+.++..-
T Consensus 386 lal~vIDEAHCVSqWg--HdFRp~Yk~l~~l-~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~ 446 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWG--HDFRPSYKRLGLL-RIRFPGVPFIALTATATERVREDVIRSLGLRN 446 (941)
T ss_pred eEEEEecHHHHhhhhc--ccccHHHHHHHHH-HhhCCCCCeEEeehhccHHHHHHHHHHhCCCC
Confidence 223442 22 1222233444432 22224433 33444455667778888776543
No 312
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=33.90 E-value=2.2e+02 Score=23.89 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccccc---CCccEEEEe
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDI---RGVKTVINY 229 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi---~~v~~VI~~ 229 (396)
.+.++.|+-.+....+-++..|...|..+...|..... +.+..+ +.+++|+.--...-++- ..=.+||++
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-----l~~~v~--~ADIVvsAtg~~~~i~~~~ikpGa~Vidv 99 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-----LQSKVH--DADVVVVGSPKPEKVPTEWIKPGATVINC 99 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-----HHHHHh--hCCEEEEecCCCCccCHHHcCCCCEEEEc
Confidence 47899999999999999999999999999999975432 112233 34555543322233443 223477777
Q ss_pred cCCC
Q psy3145 230 RMPH 233 (396)
Q Consensus 230 ~~p~ 233 (396)
+...
T Consensus 100 g~~~ 103 (140)
T cd05212 100 SPTK 103 (140)
T ss_pred CCCc
Confidence 7654
No 313
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=33.83 E-value=48 Score=29.05 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRPP 123 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~p 123 (396)
+++.+++...|++.-+++..-.+|+.+..+.|-
T Consensus 118 ~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 118 EEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 456788888898989999988889888555553
No 314
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=33.83 E-value=20 Score=34.12 Aligned_cols=14 Identities=21% Similarity=0.055 Sum_probs=11.6
Q ss_pred eeEEEecccccccc
Q psy3145 29 LRVYVETEACPKAN 42 (396)
Q Consensus 29 l~~lViDEAh~~~~ 42 (396)
-.++||||||.+-+
T Consensus 237 ~~~lIiDEAHnL~d 250 (289)
T smart00488 237 DSIVIFDEAHNLDN 250 (289)
T ss_pred ccEEEEeCccChHH
Confidence 57899999997655
No 315
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=33.83 E-value=20 Score=34.12 Aligned_cols=14 Identities=21% Similarity=0.055 Sum_probs=11.6
Q ss_pred eeEEEecccccccc
Q psy3145 29 LRVYVETEACPKAN 42 (396)
Q Consensus 29 l~~lViDEAh~~~~ 42 (396)
-.++||||||.+-+
T Consensus 237 ~~~lIiDEAHnL~d 250 (289)
T smart00489 237 DSIVIFDEAHNLDN 250 (289)
T ss_pred ccEEEEeCccChHH
Confidence 57899999997655
No 316
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=33.75 E-value=3.6e+02 Score=28.99 Aligned_cols=106 Identities=9% Similarity=0.092 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc-CCc-eEEe-------------------------eCCCCHHH
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL-GIK-AGEL-------------------------HGNLTQPS 192 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~-~~~l-------------------------hg~~~~~~ 192 (396)
.|.-++..++.. .+.++||.+.++..|..++..|+.. +-. |..+ .+.--...
T Consensus 41 ~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~ 119 (655)
T TIGR00631 41 GKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERL 119 (655)
T ss_pred HHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHH
Confidence 466666666544 3568999999999999999998765 223 4433 11112345
Q ss_pred HHHHHHHhhcCCceEEEeecccccccccC----CccEEEEecCCCChhHHHHHHhhcc
Q psy3145 193 RLESLRKFKDEETDVLIATDVAARGLDIR----GVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 193 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~----~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
|..++..+..++-.|+|||-.+-.|+=-| .....+..+...+...+..+.-..|
T Consensus 120 R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~~g 177 (655)
T TIGR00631 120 RHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVELQ 177 (655)
T ss_pred HHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHHcC
Confidence 78888888877766888876556665444 3456666777777777776665544
No 317
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=33.68 E-value=81 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=31.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
+.++|+||++-..+-.++-.|...|++ +..|.|++..
T Consensus 231 ~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 231 DRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 568999999988888888899888985 8889998653
No 318
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.16 E-value=2.5e+02 Score=24.29 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=46.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEe-ecccccccc---cCCccEEE
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIA-TDVAARGLD---IRGVKTVI 227 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva-T~~~~~Gid---i~~v~~VI 227 (396)
..+.+++|.-.+.-....++.+|...|..+...+...+ +.. +.++ +.+++|+ |.... =++ +..-.++|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--~l~---~~l~--~aDiVIsat~~~~-ii~~~~~~~~~viI 113 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--NLK---EHTK--QADIVIVAVGKPG-LVKGDMVKPGAVVI 113 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--hHH---HHHh--hCCEEEEcCCCCc-eecHHHccCCeEEE
Confidence 34556666666544466699999999988777775432 222 2222 3455554 44322 233 33346899
Q ss_pred EecCCCChh
Q psy3145 228 NYRMPHSLE 236 (396)
Q Consensus 228 ~~~~p~s~~ 236 (396)
+...|.+++
T Consensus 114 Dla~prdvd 122 (168)
T cd01080 114 DVGINRVPD 122 (168)
T ss_pred EccCCCccc
Confidence 999999887
No 319
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=33.14 E-value=93 Score=29.07 Aligned_cols=87 Identities=15% Similarity=0.310 Sum_probs=54.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcC---CceEEeeC-CCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLG---IKAGELHG-NLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~---~~~~~lhg-~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~ 224 (396)
..+||.|.+--.|-.+.+.|+... ..|+-+-+ .+.-++....+ +.+.++|.|+|+ +++.| +.+.++.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 468999999999999999998652 34443433 24444444444 457789999998 23333 6666666
Q ss_pred EEEE------------ecCCCChhHHHHHHhh
Q psy3145 225 TVIN------------YRMPHSLEHYIHRVGR 244 (396)
Q Consensus 225 ~VI~------------~~~p~s~~~y~qr~GR 244 (396)
+||. +|+|.....+++-.++
T Consensus 204 ~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 204 RIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred EEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 6552 4566655555554443
No 320
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=33.02 E-value=2.6e+02 Score=23.74 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=52.6
Q ss_pred HHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccC
Q psy3145 144 LLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIR 221 (396)
Q Consensus 144 ~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 221 (396)
+++.|+.+. .+.|++|-|.+...++.|-+.|-...-....-||.-. +.... .-.|+|++.- .--+-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~-~qPIli~~~~--~~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPA-GQPILIAWPG--GNPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCC-CCCEEEEcCC--CCCCCC
Confidence 677777544 3789999999999999999999776555555566422 11222 3358888762 223556
Q ss_pred CccEEEEecCC
Q psy3145 222 GVKTVINYRMP 232 (396)
Q Consensus 222 ~v~~VI~~~~p 232 (396)
.++++||..-+
T Consensus 86 ~~~~lInl~d~ 96 (144)
T COG2927 86 RVDLLINLADE 96 (144)
T ss_pred ceeEEEecccc
Confidence 77889987655
No 321
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=32.44 E-value=1.3e+02 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCCcEEEEeC-ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhh
Q psy3145 153 FKDHTMIFVP-TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK 201 (396)
Q Consensus 153 ~~~~~iIF~~-t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 201 (396)
.+.+++|||. +-..+..++..|...|+.+..+.||+..- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4678999995 55678888899999999999999998764 444444444
No 322
>KOG0385|consensus
Probab=32.40 E-value=2.6e+02 Score=30.57 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=48.6
Q ss_pred hHHHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhh-cCCceEEEeec
Q psy3145 140 DRKALLAALVC-RTFKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFK-DEETDVLIATD 212 (396)
Q Consensus 140 ~k~~~l~~ll~-~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~-~g~~~vLvaT~ 212 (396)
+-..+|..+.. ...++|.||.|+--.-..++.+.-+-. ++++..|||+ +++|....+.+. .|..+|+|+|-
T Consensus 202 QtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 202 QTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 34455555544 334789999998766555555543322 6899999995 688888887765 46888888875
No 323
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.00 E-value=2.2e+02 Score=21.91 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=38.2
Q ss_pred cEEEEeCChH----H-HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccc-ccCC
Q psy3145 156 HTMIFVPTKR----E-AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGL-DIRG 222 (396)
Q Consensus 156 ~~iIF~~t~~----~-~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi-di~~ 222 (396)
++++.|++=- . +..+-+.|.+.|+.+...|.+++.-. ... ...+++++|.-+...+ |+|.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~------~~~-~~~D~iv~t~~~~~~~~~ip~ 69 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE------TYM-DGVHLICTTARVDRSFGDIPL 69 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh------hhc-CCCCEEEECCccccccCCCCE
Confidence 5788887633 1 45666778888999888886654321 111 3468888887655545 3553
No 324
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=31.90 E-value=1.9e+02 Score=20.61 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=37.3
Q ss_pred cEEEEeCC-hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEee
Q psy3145 156 HTMIFVPT-KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT 211 (396)
Q Consensus 156 ~~iIF~~t-~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 211 (396)
++.+|+.. ...|..+..+|.+.|+....+.=...+..+.+..+.-..+.+.+++..
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~ 58 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN 58 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 45666644 778999999999999988877665555555555554444455555443
No 325
>KOG0326|consensus
Probab=31.33 E-value=22 Score=34.31 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred hcccceeEEEeccccccccCCCCCCce-EEeCCc
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTA-IVPNLP 56 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~-Iv~t~~ 56 (396)
..+.+-..+|+||||.++...|.|-+. ++...|
T Consensus 223 a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP 256 (459)
T KOG0326|consen 223 ADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP 256 (459)
T ss_pred ccchhceEEEechhhhhhchhhhhHHHHHHHhCC
Confidence 345677899999999999999988765 444444
No 326
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.20 E-value=2.7e+02 Score=30.52 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=21.7
Q ss_pred eeCCCCHHHHHHH----HHHhhcCCceEEEeecccc
Q psy3145 184 LHGNLTQPSRLES----LRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 184 lhg~~~~~~r~~~----~~~f~~g~~~vLvaT~~~~ 215 (396)
+-+|+++.++..+ ++.|......++++|...+
T Consensus 411 ~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 411 LGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 4567888877644 5566665677888887543
No 327
>KOG0348|consensus
Probab=31.11 E-value=26 Score=36.22 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=36.0
Q ss_pred CCCCceEEeCCcccccccccCCCcccc--cccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 45 WYPQTAIVPNLPRLKFSSEYQPKKFKT--KKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 45 f~~~~~Iv~t~~~l~~~~~~~~~~l~~--~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
.|.++.|+.+||+-+..+.-+...+.+ +.+.+|||.+.+ .+.||.+.|..|+..+.
T Consensus 259 LRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrl-leLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 259 LRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRL-LELGFEKDITQILKAVH 316 (708)
T ss_pred HhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHH-HhccchhhHHHHHHHHh
Confidence 678888776666655444444444333 333455665544 35599999999999883
No 328
>KOG1255|consensus
Probab=30.99 E-value=1.9e+02 Score=26.87 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCC
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRG 222 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 222 (396)
..+.+..++....-.+||++-.-.+..+.+.+...---+.++.-+.+|.+-..+-+.+....-.-||. |+
T Consensus 85 ~sV~eA~~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvG----------PN 154 (329)
T KOG1255|consen 85 NSVAEAKKETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVG----------PN 154 (329)
T ss_pred hhHHHHHHhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecC----------CC
Confidence 34445555666678899999999999999988765556788999999999888888887655444554 33
Q ss_pred ccEEEEec------CCCChhHHHHHHhhcccC
Q psy3145 223 VKTVINYR------MPHSLEHYIHRVGRTARA 248 (396)
Q Consensus 223 v~~VI~~~------~p~s~~~y~qr~GRagR~ 248 (396)
|--+|+-+ +| .++|..|+.|=.
T Consensus 155 CPGII~p~qckIGImP----g~Ihk~G~IGIV 182 (329)
T KOG1255|consen 155 CPGIINPGQCKIGIMP----GHIHKRGKIGIV 182 (329)
T ss_pred CCCccCccceeecccc----cccccCCeeEEE
Confidence 33344433 34 467777776633
No 329
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=30.83 E-value=4.7e+02 Score=28.06 Aligned_cols=106 Identities=9% Similarity=0.116 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc-CCc-eEEe--------------------eCCC-----CHHH
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL-GIK-AGEL--------------------HGNL-----TQPS 192 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~-~~~l--------------------hg~~-----~~~~ 192 (396)
.|..++..++.. .+.++||.+++...|+.++..|... +-. |..+ +... -...
T Consensus 44 ~ka~lia~l~~~-~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~ 122 (652)
T PRK05298 44 GKTFTMANVIAR-LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERL 122 (652)
T ss_pred HHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHH
Confidence 455556665543 3568999999999999999988665 222 4433 1111 1345
Q ss_pred HHHHHHHhhcCCceEEEeecccccccccC----CccEEEEecCCCChhHHHHHHhhcc
Q psy3145 193 RLESLRKFKDEETDVLIATDVAARGLDIR----GVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 193 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~----~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
|..++..+..++..|+|+|..+-.++=-| .....+..+-..+...+..+.-..|
T Consensus 123 R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~G 180 (652)
T PRK05298 123 RHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDLQ 180 (652)
T ss_pred HHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHcC
Confidence 78889988877666777765444554433 3445666777777888777665554
No 330
>PRK06893 DNA replication initiation factor; Validated
Probab=30.03 E-value=62 Score=29.48 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=28.5
Q ss_pred HHHHHHHHCCC-CCcEEEEeecCChhhhccCCCeEEE----EEEEEEecCChhhHHHHHHHHHh
Q psy3145 92 KDTEIVVAYCW-SKGTFQSNASMTSFLFLLRPPVLLC----LLCFRIRKDTHLDRKALLAALVC 150 (396)
Q Consensus 92 ~i~~il~~~~~-~~q~ll~SAT~~~~~~~l~~p~~i~----~~~~~~~~~~~~~k~~~l~~ll~ 150 (396)
.+..++..... +.+++++|++.++.......|--.. ...+.+.+.+...+..++.....
T Consensus 112 ~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 112 AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 34455554433 4567778887765542111110000 02334555556666666665553
No 331
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=29.68 E-value=1.6e+02 Score=31.98 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCh----HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHH
Q psy3145 142 KALLAALVCRTFKDHTMIFVPTK----REAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198 (396)
Q Consensus 142 ~~~l~~ll~~~~~~~~iIF~~t~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~ 198 (396)
...+..++....+.++-|.+.+. ..++.+...+...|+.++.+.+++++.+|..++.
T Consensus 107 vA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 107 AGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 34455556666678888888885 4556666667778999999999999999987774
No 332
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=29.17 E-value=2.1e+02 Score=20.23 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred EEEEe-CChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC-CceEEE
Q psy3145 157 TMIFV-PTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE-ETDVLI 209 (396)
Q Consensus 157 ~iIF~-~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLv 209 (396)
+.+|+ ++-..|..+..+|...|+....+.-...+..+.+..+..... .+.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45666 456778899999999999988887776666666555544322 344443
No 333
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=28.40 E-value=4.2e+02 Score=24.92 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=44.6
Q ss_pred EecCChhhHHHHHHHHHhhcCCCcEEEEeCCh----HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHH
Q psy3145 133 IRKDTHLDRKALLAALVCRTFKDHTMIFVPTK----REAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198 (396)
Q Consensus 133 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~ 198 (396)
+.-+....-...+...+....+.++=|.|.+. ..++++...+...|+.+...++++++.+|.+...
T Consensus 97 m~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~ 166 (266)
T PF07517_consen 97 MKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA 166 (266)
T ss_dssp ESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH
T ss_pred ecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh
Confidence 43333333444556666677788888888774 5566677777788999999999999988887665
No 334
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=27.91 E-value=3.9e+02 Score=30.18 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=48.5
Q ss_pred HHHHHH--hhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCC----CCceEEEEEc
Q psy3145 194 LESLRK--FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG----KGGVSVSMAG 259 (396)
Q Consensus 194 ~~~~~~--f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g----~~g~~i~l~~ 259 (396)
.....+ +.....++||.++.+=.|.|-|.++++. .|-|--.-..+|.+.|+.|.- ..|.++-|++
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 334444 3456789999999999999999777544 566766778999999999963 2377777766
No 335
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=27.77 E-value=1.8e+02 Score=32.30 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH----HhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccc
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILL----GLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGL 218 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 218 (396)
..+..++....+..+.|.+.+.--|.+.++++ ...|+.+.++.|++++.+|.... ..+|+.+|+ ..-|.
T Consensus 112 a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~-~e~gf 184 (908)
T PRK13107 112 ATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN-NEFGF 184 (908)
T ss_pred HHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC-Ccccc
Confidence 33444555556677999999987776666655 45699999999999986554322 457888887 34556
Q ss_pred cc
Q psy3145 219 DI 220 (396)
Q Consensus 219 di 220 (396)
|.
T Consensus 185 Dy 186 (908)
T PRK13107 185 DY 186 (908)
T ss_pred hh
Confidence 65
No 336
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=27.43 E-value=3.6e+02 Score=23.05 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
..+...++.|+.+.. +.+++|.|.+...++.|=+.|-...-....=||..... ......|+++++. .
T Consensus 12 ~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~---------~~a~~PV~L~~~~--~ 80 (154)
T PRK06646 12 ELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDP---------QPEKQPIYITDEL--Q 80 (154)
T ss_pred ChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC---------CCCCCCEEEecCC--C
Confidence 457888888886543 68999999999999999999876554444456532111 0124468887442 1
Q ss_pred ccccCCccEEEEecC
Q psy3145 217 GLDIRGVKTVINYRM 231 (396)
Q Consensus 217 Gidi~~v~~VI~~~~ 231 (396)
+ ..+.++.||.+.
T Consensus 81 ~--p~~~~vLiNL~~ 93 (154)
T PRK06646 81 N--PNNASVLVIISP 93 (154)
T ss_pred C--CCCCCEEEECCC
Confidence 2 225667888764
No 337
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.38 E-value=3.3e+02 Score=23.65 Aligned_cols=59 Identities=24% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCC--------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPT--------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t--------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
-...+.++.+.....+++|+.|+ ...|+.+.+.| |+++. .|+...|.-..++++-|...
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl-~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVL-RHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEE-EeCCCCCccHHHHHHHHhhc
Confidence 34555565545445589999998 45666666665 55543 46666666677888888643
No 338
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=27.01 E-value=31 Score=36.74 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=14.8
Q ss_pred cccceeEEEeccccccccC
Q psy3145 25 EVEGLRVYVETEACPKANL 43 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~ 43 (396)
.+-..+++||||||++-+.
T Consensus 203 iLP~~~~lIiDEAH~L~d~ 221 (636)
T TIGR03117 203 LLPQPDILIVDEAHLFEQN 221 (636)
T ss_pred CCCCCCEEEEeCCcchHHH
Confidence 5556789999999996543
No 339
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=26.84 E-value=1.3e+02 Score=29.02 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++|+||++-..+-.++-.|...|+. +..|.|++..
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~e 306 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTE 306 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHH
Confidence 3579999999987888888888888985 7788998643
No 340
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.74 E-value=1.5e+02 Score=32.88 Aligned_cols=24 Identities=13% Similarity=-0.152 Sum_probs=11.5
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCCh
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTS 115 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~ 115 (396)
..|.+++...|.+.-+|+.+ |-+.
T Consensus 138 NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 138 NALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred HHHHHHHhCCCCCeEEEEEe-CChh
Confidence 34455555555555455433 4443
No 341
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=26.70 E-value=1.1e+02 Score=33.90 Aligned_cols=54 Identities=9% Similarity=0.165 Sum_probs=36.4
Q ss_pred CcEEEEe-CChHHHHHHHHHHHhc---------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCce
Q psy3145 155 DHTMIFV-PTKREAHEMHILLGLL---------------------------GIKAGELHGNLTQPSRLESLRKFKDEETD 206 (396)
Q Consensus 155 ~~~iIF~-~t~~~~~~l~~~L~~~---------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 206 (396)
.+.|||+ +|+.-+..+++.+... ++++..++||.+..... .... ....
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCCc
Confidence 4577766 9988887777665433 26788899998765432 3333 3458
Q ss_pred EEEeec
Q psy3145 207 VLIATD 212 (396)
Q Consensus 207 vLvaT~ 212 (396)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999994
No 342
>KOG0337|consensus
Probab=26.52 E-value=1.3e+02 Score=30.27 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=48.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC----CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec------ccccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG----IKAGELHGNLTQPSRLESLRKFKDEETDVLIATD------VAARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gidi~~v 223 (396)
+-+.+|-++|++-+....+.+++.| .++..+.|+-+-+++...+ ++.-++++||+ .+++-+++..|
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l----~~npDii~ATpgr~~h~~vem~l~l~sv 165 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL----NENPDIIIATPGRLLHLGVEMTLTLSSV 165 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh----ccCCCEEEecCceeeeeehheeccccce
Confidence 4589999999999998888887764 4566555554444333222 24567899998 34455677788
Q ss_pred cEEE
Q psy3145 224 KTVI 227 (396)
Q Consensus 224 ~~VI 227 (396)
.+|+
T Consensus 166 eyVV 169 (529)
T KOG0337|consen 166 EYVV 169 (529)
T ss_pred eeee
Confidence 8888
No 343
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=26.45 E-value=64 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHhcCCceEEe--eCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 172 ILLGLLGIKAGEL--HGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 172 ~~L~~~~~~~~~l--hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
++|.+.|+.+..+ +.+.+......+.+.+++|+++++|.|+.
T Consensus 37 ~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 37 DFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred HHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 4455667766654 22222212256888888999999988764
No 344
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.11 E-value=3.1e+02 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=15.6
Q ss_pred hhHHHHHHhhcccCC-CCceEEEE
Q psy3145 235 LEHYIHRVGRTARAG-KGGVSVSM 257 (396)
Q Consensus 235 ~~~y~qr~GRagR~g-~~g~~i~l 257 (396)
..+|++|+|++|+.. ..|.-+.=
T Consensus 67 ~~~yl~rlG~~~~s~~~~gTdfS~ 90 (195)
T PF12761_consen 67 GDSYLSRLGRGGKSYKEKGTDFSA 90 (195)
T ss_pred hHHHHHHhccccCCCCCCCCCCCC
Confidence 468999999998733 23554443
No 345
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=26.09 E-value=5e+02 Score=24.04 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy3145 304 DKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQ 336 (396)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 336 (396)
.+|.++++.+-=++...+..+..++.+.+-+..
T Consensus 107 NdYLEevE~l~f~l~~~idv~~teEKvk~yee~ 139 (314)
T COG5220 107 NDYLEEVEELVFELLELIDVSLTEEKVKKYEEM 139 (314)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 445555555444444444444444444444433
No 346
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=26.06 E-value=5.3e+02 Score=26.16 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=7.0
Q ss_pred hhHHHHHHhhc
Q psy3145 235 LEHYIHRVGRT 245 (396)
Q Consensus 235 ~~~y~qr~GRa 245 (396)
...++.|+|+.
T Consensus 285 l~~l~ERag~~ 295 (433)
T PRK07594 285 LPRLLERTGMG 295 (433)
T ss_pred hHHHHHhhcCC
Confidence 45667777763
No 347
>KOG0390|consensus
Probab=25.87 E-value=23 Score=38.33 Aligned_cols=18 Identities=17% Similarity=-0.064 Sum_probs=15.3
Q ss_pred cceeEEEeccccccccCC
Q psy3145 27 EGLRVYVETEACPKANLG 44 (396)
Q Consensus 27 ~~l~~lViDEAh~~~~~g 44 (396)
...++||.||.|++.+..
T Consensus 375 ~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 375 IRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred CCCCeEEECCCCCccchh
Confidence 358999999999988865
No 348
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=25.68 E-value=1.5e+02 Score=20.44 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.7
Q ss_pred EEEe-CChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEe
Q psy3145 158 MIFV-PTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIA 210 (396)
Q Consensus 158 iIF~-~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 210 (396)
.+|. .+-..|..+...|...++....+.-.-.+..+....+.+..+.+.+++-
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 3444 4466788888888888887776654444445555666676666776664
No 349
>PHA03371 circ protein; Provisional
Probab=25.68 E-value=57 Score=29.70 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=25.8
Q ss_pred ccccccccCCccEE-EEecC------------C-CChhHHHHHHhhcccCCC
Q psy3145 213 VAARGLDIRGVKTV-INYRM------------P-HSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 213 ~~~~Gidi~~v~~V-I~~~~------------p-~s~~~y~qr~GRagR~g~ 250 (396)
+++|-||+|+=+-+ |-.|. | .+--.|+|.+|||--.|-
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~ 80 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGS 80 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCC
Confidence 45677888877766 53333 2 256678999999876663
No 350
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.54 E-value=3e+02 Score=20.76 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCcEEEEeC------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHH
Q psy3145 154 KDHTMIFVP------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLR 198 (396)
Q Consensus 154 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~ 198 (396)
..+++||+. +..-|..+.++|...|+....+.=...++.+..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 468999986 466788999999999987766653334444443333
No 351
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=25.34 E-value=81 Score=28.13 Aligned_cols=32 Identities=9% Similarity=-0.128 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRP 122 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~ 122 (396)
+++.+++...|+..-+++.--..|+.+..+.|
T Consensus 136 eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 136 EEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred HHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45677888888888888888888888844444
No 352
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=24.83 E-value=35 Score=36.89 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=12.1
Q ss_pred eeEEEeccccccccC
Q psy3145 29 LRVYVETEACPKANL 43 (396)
Q Consensus 29 l~~lViDEAh~~~~~ 43 (396)
..++||||||++-+.
T Consensus 247 ~~~lViDEAH~L~d~ 261 (697)
T PRK11747 247 NLLYVLDEGHHLPDV 261 (697)
T ss_pred CCEEEEECccchHHH
Confidence 578999999996643
No 353
>KOG2680|consensus
Probab=24.67 E-value=82 Score=30.38 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=35.6
Q ss_pred eEEEecccccc-----------ccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHH
Q psy3145 30 RVYVETEACPK-----------ANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVV 98 (396)
Q Consensus 30 ~~lViDEAh~~-----------~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~ 98 (396)
++|-|||+|.+ ++..|.|-+ ++.|..+.-...-.+..+..=+.+|.+|...-.-..+.-.+++..|++
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~ 368 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALENDMAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILR 368 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhccCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHH
Confidence 57889999972 233355544 334443433333334444444555555553322223333567777776
Q ss_pred HC
Q psy3145 99 AY 100 (396)
Q Consensus 99 ~~ 100 (396)
-.
T Consensus 369 iR 370 (454)
T KOG2680|consen 369 IR 370 (454)
T ss_pred hh
Confidence 53
No 354
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=24.58 E-value=2.1e+02 Score=31.42 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCCh----HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTK----REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
.-.+.+..++....+.++-|.+.|. ..++.+...+...|++++.+.|++++.+|..+.. .+|.-+|+ .+
T Consensus 107 TLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~------~dI~Y~t~-~e 179 (796)
T PRK12906 107 TLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN------CDITYSTN-SE 179 (796)
T ss_pred cHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhc------CCCeecCC-cc
Confidence 3445566666677788888888884 5566777777788999999999999999986664 24555554 45
Q ss_pred cccccC
Q psy3145 216 RGLDIR 221 (396)
Q Consensus 216 ~Gidi~ 221 (396)
-|.|.-
T Consensus 180 ~gfDyL 185 (796)
T PRK12906 180 LGFDYL 185 (796)
T ss_pred ccccch
Confidence 666653
No 355
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=24.48 E-value=25 Score=33.72 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=17.7
Q ss_pred ceeEEEeccccccccCCCCCCc
Q psy3145 28 GLRVYVETEACPKANLGWYPQT 49 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~gf~~~~ 49 (396)
++++|||||.|.++..+.+.+-
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr 166 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQR 166 (302)
T ss_pred CCcEEEeechHHHhcccHHHHH
Confidence 6899999999998877655544
No 356
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=24.47 E-value=2.2e+02 Score=25.89 Aligned_cols=72 Identities=8% Similarity=-0.072 Sum_probs=42.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceE---EeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEe
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAG---ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINY 229 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~ 229 (396)
.++++++++... .-+.+.+.|.+.|+.+. .|.-...........+.+..+.+++++-|+
T Consensus 117 ~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S----------------- 178 (240)
T PRK09189 117 PTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS----------------- 178 (240)
T ss_pred CCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC-----------------
Confidence 345666666544 45889999999987653 333322222233455666666655554444
Q ss_pred cCCCChhHHHHHHhh
Q psy3145 230 RMPHSLEHYIHRVGR 244 (396)
Q Consensus 230 ~~p~s~~~y~qr~GR 244 (396)
|.+...|....|.
T Consensus 179 --~~~~~~f~~~~~~ 191 (240)
T PRK09189 179 --RVAARRFFALMRL 191 (240)
T ss_pred --HHHHHHHHHHHhh
Confidence 4456677777764
No 357
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=24.42 E-value=2.1e+02 Score=25.65 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHH--------HHHHHHHhhcCCc-eEEEeecccccc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS--------RLESLRKFKDEET-DVLIATDVAARG 217 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~--------r~~~~~~f~~g~~-~vLvaT~~~~~G 217 (396)
++++|..+.+.+.+..+-+.= ...-...++||.+++-. -...+++...+.+ .|++||+.--.|
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~-~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTG-EFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcchHHHHHHHHhc-ccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 457888899998887765532 22234556777655533 2566788888888 899999965554
No 358
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.37 E-value=3.8e+02 Score=21.97 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=40.9
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccc----ccCCc---
Q psy3145 151 RTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGL----DIRGV--- 223 (396)
Q Consensus 151 ~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi----di~~v--- 223 (396)
...-.++.|+-.|...++.+++.+....+.+..+.. +. ..+. +.+++|.|...++-+ .+...
T Consensus 33 ~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-~~-----~~~~-----~~DivI~aT~~~~~~i~~~~~~~~~~~ 101 (135)
T PF01488_consen 33 ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-LE-----EALQ-----EADIVINATPSGMPIITEEMLKKASKK 101 (135)
T ss_dssp HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-HC-----HHHH-----TESEEEE-SSTTSTSSTHHHHTTTCHH
T ss_pred HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-HH-----HHHh-----hCCeEEEecCCCCcccCHHHHHHHHhh
Confidence 334456888888888888888887333333332221 11 2222 356776665554332 23444
Q ss_pred -cEEEEecCCCChhH
Q psy3145 224 -KTVINYRMPHSLEH 237 (396)
Q Consensus 224 -~~VI~~~~p~s~~~ 237 (396)
.+|++...|.+.+.
T Consensus 102 ~~~v~Dla~Pr~i~~ 116 (135)
T PF01488_consen 102 LRLVIDLAVPRDIDP 116 (135)
T ss_dssp CSEEEES-SS-SB-T
T ss_pred hhceeccccCCCCCh
Confidence 58888888877664
No 359
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=24.15 E-value=1.5e+02 Score=24.02 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCcEEEEeCChHH---------HHHHHHHHHh---cCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKRE---------AHEMHILLGL---LGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~---------~~~l~~~L~~---~~~~~~~lhg~~~~ 190 (396)
...++|||+.+-.. +..++..|.. .+.++..+.||+..
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~ 123 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQ 123 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHH
Confidence 56789999987665 7777888876 45689999999643
No 360
>PRK07413 hypothetical protein; Validated
Probab=23.98 E-value=3e+02 Score=27.46 Aligned_cols=32 Identities=3% Similarity=-0.086 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRP 122 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~ 122 (396)
+++.+++..-|+..-+++.--.+|+.+..+.|
T Consensus 146 eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 146 DEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 46678888888888899988888988844444
No 361
>PRK14738 gmk guanylate kinase; Provisional
Probab=23.96 E-value=4.6e+02 Score=23.21 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=34.3
Q ss_pred eEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHh
Q psy3145 181 AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 181 ~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~G 243 (396)
...+||..=--.+..+.....+|..-|+-++--...++.-..-+.++.|..|.+.....+|.-
T Consensus 81 ~~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~ 143 (206)
T PRK14738 81 WAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLE 143 (206)
T ss_pred EEEEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHH
Confidence 444555332222345556667776644433322222222222356788888888888888863
No 362
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=23.92 E-value=2e+02 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=30.5
Q ss_pred CcEEEEeC-ChHHHHHHHHHHHhcCCceEEeeCCCCHH
Q psy3145 155 DHTMIFVP-TKREAHEMHILLGLLGIKAGELHGNLTQP 191 (396)
Q Consensus 155 ~~~iIF~~-t~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 191 (396)
.+++|||. +-..+...+..|...|+.+..+.||+..-
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw 112 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY 112 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH
Confidence 35999995 56778888999999999999999997554
No 363
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=23.80 E-value=6.1e+02 Score=26.02 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=6.1
Q ss_pred hhHHHHHHhhc
Q psy3145 235 LEHYIHRVGRT 245 (396)
Q Consensus 235 ~~~y~qr~GRa 245 (396)
...++-|+|..
T Consensus 278 l~~L~ERag~~ 288 (463)
T PRK09280 278 MGQLQERITST 288 (463)
T ss_pred HHHHHHHhcCC
Confidence 34555666653
No 364
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=23.26 E-value=90 Score=31.16 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.7
Q ss_pred eEEEeccccccccCC
Q psy3145 30 RVYVETEACPKANLG 44 (396)
Q Consensus 30 ~~lViDEAh~~~~~g 44 (396)
-+++|||||.++-+|
T Consensus 202 a~L~VDEAHa~Gv~G 216 (388)
T COG0156 202 ALLYVDEAHAVGVLG 216 (388)
T ss_pred cEEEEEccccccccC
Confidence 389999999977777
No 365
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=23.25 E-value=1.4e+02 Score=26.76 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCce---EEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccc
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKA---GELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLD 219 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~---~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 219 (396)
.++..+.....++++++++... .-..+.+.|+..|+.+ .+|.. ..........+.|..+.+.+++-|+
T Consensus 106 ~L~~~l~~~~~~~~vl~~~g~~-~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS------- 176 (231)
T PF02602_consen 106 GLAELLKEQLRGKRVLILRGEG-GRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTS------- 176 (231)
T ss_dssp HHHGGHHHCCTTEEEEEEESSS-SCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESS-------
T ss_pred HHHHHHHhhCCCCeEEEEcCCC-ccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECC-------
Confidence 3333333334455555555543 3567888898888654 44445 6667788888888888877776665
Q ss_pred cCCccEEEEecCCCChhHHHHHHhhcc
Q psy3145 220 IRGVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 220 i~~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
|.+...+....+..+
T Consensus 177 ------------~~~~~~~~~~~~~~~ 191 (231)
T PF02602_consen 177 ------------PSAVRAFLELLKKNG 191 (231)
T ss_dssp ------------HHHHHHHHHHSSGHH
T ss_pred ------------HHHHHHHHHHhHhhh
Confidence 445666777766654
No 366
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.99 E-value=1.2e+02 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHh-cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 172 ILLGL-LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 172 ~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
++|++ .|+.+..+..+ +...+..+.+.+++|+++.+|.|+.
T Consensus 38 ~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 38 LLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 44555 68877666211 1223467899999999888887764
No 367
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.85 E-value=1.2e+02 Score=29.89 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||++-..+...+..|...|+. +..+.||+..
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 3568999999988899999999999996 7788998743
No 368
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.81 E-value=1.1e+02 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRP 122 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~ 122 (396)
+++.++++..|++.-+++.--.+|+.+..+.|
T Consensus 136 eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 136 TEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 46778888888888888888888888855544
No 369
>KOG0336|consensus
Probab=22.42 E-value=2.9e+02 Score=27.93 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCcEEEEeCChHHHHHHHHHH---HhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILL---GLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L---~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
...++|+++|+.-+..+-... +..|.+..+++|+-+..+ .++.++. .+.+++||+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e---qie~lkr-gveiiiatP 351 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE---QIEDLKR-GVEIIIATP 351 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh---HHHHHhc-CceEEeeCC
Confidence 457899999998776654433 345888888888765444 4455543 467899988
No 370
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=22.26 E-value=38 Score=27.23 Aligned_cols=13 Identities=23% Similarity=-0.008 Sum_probs=10.6
Q ss_pred eeEEEeccccccc
Q psy3145 29 LRVYVETEACPKA 41 (396)
Q Consensus 29 l~~lViDEAh~~~ 41 (396)
..++||||||.+.
T Consensus 88 ~~~lviDe~~~l~ 100 (131)
T PF13401_consen 88 VVLLVIDEADHLF 100 (131)
T ss_dssp EEEEEEETTHHHH
T ss_pred CeEEEEeChHhcC
Confidence 3689999999863
No 371
>PRK04296 thymidine kinase; Provisional
Probab=22.18 E-value=92 Score=27.42 Aligned_cols=22 Identities=0% Similarity=-0.334 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCCCcEEEEeecC
Q psy3145 92 KDTEIVVAYCWSKGTFQSNASM 113 (396)
Q Consensus 92 ~i~~il~~~~~~~q~ll~SAT~ 113 (396)
++.++++.+......+++++-.
T Consensus 94 ~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 94 QVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred HHHHHHHHHHHcCCeEEEEecC
Confidence 4566666644333444444433
No 372
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=22.09 E-value=6.8e+02 Score=23.67 Aligned_cols=64 Identities=9% Similarity=-0.087 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChH-----------HHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhhcCC
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKR-----------EAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFKDEE 204 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~-----------~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~ 204 (396)
-.+++..+.....-.+++|+++|-. .+-.++++|+.. |.+|..+.-+++.-.+....-....|+
T Consensus 113 v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge 188 (274)
T cd01133 113 GNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR 188 (274)
T ss_pred HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCC
Confidence 3444555544433456777776643 245677888877 888888888888776655555555554
No 373
>KOG0352|consensus
Probab=22.09 E-value=1.5e+02 Score=30.09 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC--CceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE--ETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~vLvaT~ 212 (396)
++=+|||.+-..-...-...|..+.+++..+.+.|+..+|.+++..+... .+++|--|+
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 35789999999888888888989999999999999999999999998764 466776665
No 374
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.88 E-value=3.8e+02 Score=24.06 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=29.6
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHH
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r 193 (396)
.++-||++. ..+.+.+.+...++.+.-+||..++..-
T Consensus 54 ~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~ 90 (207)
T PRK13958 54 DKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFI 90 (207)
T ss_pred CEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 578999887 5567777777889999999999887653
No 375
>KOG0333|consensus
Probab=21.86 E-value=60 Score=33.55 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=43.3
Q ss_pred eeEEEeccccccccCCC--CCCceEEeCC-cccc---cccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 29 LRVYVETEACPKANLGW--YPQTAIVPNL-PRLK---FSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 29 l~~lViDEAh~~~~~gf--~~~~~Iv~t~-~~l~---~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
.+++.|=--|.+-+.|| ...+.|+..+ ++|. -...+-......+++|+.|...+| ||.+++..|+.++|.
T Consensus 351 ~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDm----gfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 351 IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDM----GFEPDVQKILEQMPS 426 (673)
T ss_pred ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcc----cccHHHHHHHHhCCc
Confidence 44555556666666664 3456655444 4544 222333445566666666665444 899999999999984
No 376
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=21.83 E-value=2.9e+02 Score=21.66 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=23.4
Q ss_pred CCcEEEEeCCh-----HHHHHHHHHHHhcCC---ceEEeeCCCC
Q psy3145 154 KDHTMIFVPTK-----REAHEMHILLGLLGI---KAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~-----~~~~~l~~~L~~~~~---~~~~lhg~~~ 189 (396)
..++|++|.+. ..+..+...|...|+ ++..+.||+.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 46789999752 334556666666675 5666788764
No 377
>PRK06936 type III secretion system ATPase; Provisional
Probab=21.65 E-value=6.6e+02 Score=25.56 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=39.6
Q ss_pred EEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHH----HHHHhcCC--c-eEEeeCCCCHHHHHH-------
Q psy3145 130 CFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMH----ILLGLLGI--K-AGELHGNLTQPSRLE------- 195 (396)
Q Consensus 130 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~----~~L~~~~~--~-~~~lhg~~~~~~r~~------- 195 (396)
.+.+.......|..++..+... ....++||+--=....++. ..|...+. . +..-.++.++..|..
T Consensus 164 ~~~I~G~sG~GKStLl~~Ia~~-~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~t 242 (439)
T PRK06936 164 RMGIFAAAGGGKSTLLASLIRS-AEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATS 242 (439)
T ss_pred EEEEECCCCCChHHHHHHHhcC-CCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3334334445576666655533 3334667763322223333 33433332 2 233346677777753
Q ss_pred HHHHhhcCCceEEEeec
Q psy3145 196 SLRKFKDEETDVLIATD 212 (396)
Q Consensus 196 ~~~~f~~g~~~vLvaT~ 212 (396)
+-+-|+....+||+--|
T Consensus 243 iAEyfrd~G~~Vll~~D 259 (439)
T PRK06936 243 IAEYFRDQGKRVLLLMD 259 (439)
T ss_pred HHHHHHHcCCCEEEecc
Confidence 34556654446665444
No 378
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=21.63 E-value=43 Score=37.52 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=14.5
Q ss_pred cccceeEEEeccccccccC
Q psy3145 25 EVEGLRVYVETEACPKANL 43 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~ 43 (396)
.+...+++||||||++-+.
T Consensus 452 ilp~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 452 LLPSYEHIIIDEAHHFEEA 470 (928)
T ss_pred cCCCCCeEEEECCchHHHH
Confidence 4455689999999996643
No 379
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.42 E-value=3.9e+02 Score=21.57 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=37.0
Q ss_pred cEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 156 HTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.++|=+.+...+....+.+.+.|..+..-..|+++++...+.+ +.. ++.+++|.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~-~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LAK-KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HTT-TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hhc-cCCEEEeCC
Confidence 4777777888888888888888988888787887666544444 433 388888765
No 380
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.05 E-value=5.8e+02 Score=23.57 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc-CCceE-EeeCCCCHHHHHHHHHHhhcCCceEEE
Q psy3145 143 ALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL-GIKAG-ELHGNLTQPSRLESLRKFKDEETDVLI 209 (396)
Q Consensus 143 ~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vLv 209 (396)
+++..++... .+.++-++-.+...++.+++.|+.. |+.+. .+||-.++++...+++.......++|+
T Consensus 92 dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 92 DLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4444444332 2346666666667788888888654 66654 456777777777788888776666554
No 381
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=21.00 E-value=3.6e+02 Score=23.82 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHH
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPS 192 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 192 (396)
..+....+........+.||.+. ..+.+.+.+...++.+.-+||..+.+.
T Consensus 36 ~~~~a~~l~~~~~~~~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 36 SPDQARELVSAVPPKIVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPEY 85 (197)
T ss_dssp -HHHHHHHHCCSSSSEEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HHH
T ss_pred CHHHHHHHHHhcCCCEEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 44556666655555588999987 556777778888999999999885443
No 382
>PRK05642 DNA replication initiation factor; Validated
Probab=20.83 E-value=1.1e+02 Score=28.02 Aligned_cols=26 Identities=12% Similarity=-0.161 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChh
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSF 116 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~ 116 (396)
..+..++..+......++++++.++.
T Consensus 117 ~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 117 EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 45667776665543445566665443
No 383
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=20.60 E-value=8.2e+02 Score=24.51 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=46.2
Q ss_pred ChhhHHHHHHHHHhhcC---------CCcEEEEeCChHHHHHHHHHHHhcCC--ceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 137 THLDRKALLAALVCRTF---------KDHTMIFVPTKREAHEMHILLGLLGI--KAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~---------~~~~iIF~~t~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
....+...|..+|.... ++.+.|.+++...+++....|.+.++ ++...- .+.++.++...+..+
T Consensus 167 s~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~~ 241 (393)
T PRK15327 167 SPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDTY 241 (393)
T ss_pred chHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHhc
Confidence 34458888888885432 46899999999999999999877654 444432 566777777777654
No 384
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.18 E-value=5.6e+02 Score=25.34 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCh----HHHHHHHHHHHhcCCceEEeeCC---CCHHHHHHHHHHhhcCCceEEEe
Q psy3145 141 RKALLAALVCRTFKDHTMIFVPTK----REAHEMHILLGLLGIKAGELHGN---LTQPSRLESLRKFKDEETDVLIA 210 (396)
Q Consensus 141 k~~~l~~ll~~~~~~~~iIF~~t~----~~~~~l~~~L~~~~~~~~~lhg~---~~~~~r~~~~~~f~~g~~~vLva 210 (396)
....+...+.....++++|.+... ...+.+...|...|+.+..+.|- -+.+.-.+..+.++..+.+++|+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 344455555444435666665431 13556777777777766555442 23344556667777777777775
No 385
>KOG0387|consensus
Probab=20.11 E-value=1.5e+02 Score=32.31 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=14.8
Q ss_pred CcEEEEeCChHHHHHHHHHH
Q psy3145 155 DHTMIFVPTKREAHEMHILL 174 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L 174 (396)
.-.++||.-...-..+|..+
T Consensus 457 ~E~VlfC~LT~~QR~~Y~~f 476 (923)
T KOG0387|consen 457 EEIVLFCRLTKLQRRLYQRF 476 (923)
T ss_pred cceEEEEeccHHHHHHHHHH
Confidence 45799998877777777654
Done!