Query psy3145
Match_columns 396
No_of_seqs 381 out of 3783
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.2E-35 1.4E-39 293.9 22.7 203 25-273 200-420 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.4E-34 4.7E-39 287.0 20.9 213 26-282 177-404 (410)
3 3eiq_A Eukaryotic initiation f 100.0 4.3E-34 1.5E-38 283.2 15.8 211 26-280 181-406 (414)
4 3sqw_A ATP-dependent RNA helic 100.0 5.9E-33 2E-37 288.0 23.9 216 24-280 171-417 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 6.6E-33 2.2E-37 286.5 23.8 215 25-280 223-468 (563)
6 3pey_A ATP-dependent RNA helic 100.0 8.6E-33 2.9E-37 271.5 21.9 206 26-274 143-370 (395)
7 3fht_A ATP-dependent RNA helic 100.0 1.4E-32 4.8E-37 271.9 23.2 193 88-280 185-399 (412)
8 1s2m_A Putative ATP-dependent 100.0 5.2E-33 1.8E-37 274.5 19.6 190 89-279 180-383 (400)
9 2i4i_A ATP-dependent RNA helic 100.0 6E-33 2.1E-37 275.4 19.6 205 26-274 173-396 (417)
10 2v1x_A ATP-dependent DNA helic 100.0 2E-32 6.8E-37 283.9 22.8 203 26-270 163-383 (591)
11 1xti_A Probable ATP-dependent 100.0 3.8E-32 1.3E-36 267.1 23.5 191 88-279 169-376 (391)
12 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-32 9.6E-37 279.4 23.1 202 27-272 138-354 (523)
13 1hv8_A Putative ATP-dependent 100.0 3.7E-32 1.3E-36 264.3 21.1 208 26-279 145-363 (367)
14 1fuu_A Yeast initiation factor 100.0 2.6E-33 9E-38 275.5 3.4 209 26-278 160-383 (394)
15 3fmp_B ATP-dependent RNA helic 100.0 4.1E-33 1.4E-37 282.6 4.7 191 88-278 252-464 (479)
16 2z0m_A 337AA long hypothetical 100.0 2.5E-30 8.5E-35 248.7 17.0 197 26-274 127-335 (337)
17 3eaq_A Heat resistant RNA depe 100.0 1.1E-28 3.9E-33 223.7 22.6 147 137-283 14-160 (212)
18 2hjv_A ATP-dependent RNA helic 100.0 5.2E-29 1.8E-33 216.6 19.4 142 137-278 18-159 (163)
19 3fho_A ATP-dependent RNA helic 100.0 7.8E-31 2.7E-35 268.0 8.8 211 26-279 257-489 (508)
20 2rb4_A ATP-dependent RNA helic 100.0 6.9E-29 2.4E-33 218.2 19.3 148 136-283 16-169 (175)
21 3oiy_A Reverse gyrase helicase 100.0 4.9E-30 1.7E-34 255.0 11.2 210 26-281 137-385 (414)
22 1t5i_A C_terminal domain of A 100.0 2E-28 7E-33 214.8 18.4 143 137-279 14-157 (172)
23 1fuk_A Eukaryotic initiation f 100.0 1.4E-28 4.7E-33 214.3 16.9 142 138-279 14-155 (165)
24 3i32_A Heat resistant RNA depe 100.0 1.3E-27 4.6E-32 227.4 22.7 146 138-283 12-157 (300)
25 3l9o_A ATP-dependent RNA helic 100.0 1.1E-27 3.7E-32 263.4 24.7 206 25-274 287-611 (1108)
26 2p6n_A ATP-dependent RNA helic 100.0 4.2E-28 1.4E-32 216.4 17.1 136 137-273 38-174 (191)
27 2xgj_A ATP-dependent RNA helic 100.0 3.9E-27 1.3E-31 256.9 27.0 205 23-271 187-510 (1010)
28 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.5E-27 5.1E-32 211.8 15.7 137 138-274 29-166 (185)
29 4a4z_A Antiviral helicase SKI2 99.9 2.1E-25 7.2E-30 243.2 31.7 132 142-274 324-507 (997)
30 1yks_A Genome polyprotein [con 99.9 1.5E-27 5.3E-32 239.3 11.9 163 101-273 128-314 (440)
31 1c4o_A DNA nucleotide excision 99.9 4.3E-27 1.5E-31 246.9 15.0 233 102-355 379-638 (664)
32 2yjt_D ATP-dependent RNA helic 99.9 5.3E-29 1.8E-33 218.0 0.0 145 139-283 15-159 (170)
33 2whx_A Serine protease/ntpase/ 99.9 1.8E-27 6.3E-32 247.5 11.2 173 90-273 294-493 (618)
34 1tf5_A Preprotein translocase 99.9 8.2E-26 2.8E-30 236.9 22.1 124 138-263 414-547 (844)
35 2d7d_A Uvrabc system protein B 99.9 2.1E-26 7.3E-31 241.6 17.0 236 102-349 385-647 (661)
36 1wp9_A ATP-dependent RNA helic 99.9 3E-26 1E-30 229.7 16.6 122 141-263 344-477 (494)
37 4a2p_A RIG-I, retinoic acid in 99.9 5.9E-26 2E-30 233.1 17.5 123 141-265 373-512 (556)
38 4ddu_A Reverse gyrase; topoiso 99.9 1.2E-26 4E-31 255.2 12.8 205 26-274 194-503 (1104)
39 3tbk_A RIG-I helicase domain; 99.9 2.3E-25 7.9E-30 228.3 21.1 125 141-267 372-513 (555)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.6E-25 5.4E-30 237.7 20.0 191 26-263 143-410 (715)
41 2wv9_A Flavivirin protease NS2 99.9 2.5E-26 8.7E-31 240.7 13.6 160 102-273 362-548 (673)
42 2jlq_A Serine protease subunit 99.9 7.5E-26 2.6E-30 227.8 15.5 150 100-260 138-310 (451)
43 2p6r_A Afuhel308 helicase; pro 99.9 9.6E-26 3.3E-30 238.9 17.0 194 26-262 136-389 (702)
44 2zj8_A DNA helicase, putative 99.9 2.1E-25 7E-30 237.0 18.9 191 26-262 136-388 (720)
45 2z83_A Helicase/nucleoside tri 99.9 9.8E-27 3.3E-31 234.7 7.6 149 101-261 141-313 (459)
46 4gl2_A Interferon-induced heli 99.9 5.8E-25 2E-29 232.5 20.2 106 154-261 400-519 (699)
47 2fsf_A Preprotein translocase 99.9 3.3E-25 1.1E-29 231.8 17.9 125 137-263 422-585 (853)
48 2ykg_A Probable ATP-dependent 99.9 2.1E-24 7.1E-29 228.2 21.9 126 140-267 380-522 (696)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 1.8E-25 6.2E-30 245.5 13.2 164 101-275 213-468 (1054)
50 4a2q_A RIG-I, retinoic acid in 99.9 2.1E-24 7.2E-29 231.6 20.6 122 141-264 614-752 (797)
51 1nkt_A Preprotein translocase 99.9 3.7E-24 1.3E-28 224.3 21.5 124 138-263 442-619 (922)
52 3o8b_A HCV NS3 protease/helica 99.9 2.2E-25 7.6E-30 231.1 12.2 172 86-275 331-532 (666)
53 2xau_A PRE-mRNA-splicing facto 99.9 1.4E-25 4.9E-30 238.8 10.1 169 93-263 231-445 (773)
54 3dmq_A RNA polymerase-associat 99.9 7.2E-24 2.5E-28 231.1 23.4 192 138-346 487-683 (968)
55 3rc3_A ATP-dependent RNA helic 99.9 2E-25 6.9E-30 233.5 10.4 208 25-283 236-466 (677)
56 2v6i_A RNA helicase; membrane, 99.9 8.2E-25 2.8E-29 218.9 13.3 146 101-258 122-288 (431)
57 4a2w_A RIG-I, retinoic acid in 99.9 6.3E-24 2.2E-28 231.1 19.9 122 141-264 614-752 (936)
58 2eyq_A TRCF, transcription-rep 99.9 3.7E-24 1.3E-28 236.6 17.7 165 93-261 741-922 (1151)
59 2oca_A DAR protein, ATP-depend 99.9 5.5E-24 1.9E-28 217.0 15.2 167 92-259 241-453 (510)
60 4f92_B U5 small nuclear ribonu 99.9 1E-23 3.5E-28 239.6 14.2 211 23-271 202-483 (1724)
61 4f92_B U5 small nuclear ribonu 99.9 8.1E-23 2.8E-27 232.3 19.6 211 22-270 1040-1317(1724)
62 2fwr_A DNA repair protein RAD2 99.9 2.2E-23 7.7E-28 210.5 13.0 116 140-260 335-453 (472)
63 1gm5_A RECG; helicase, replica 99.9 4.9E-24 1.7E-28 226.2 7.6 159 102-263 515-699 (780)
64 3h1t_A Type I site-specific re 99.9 2.5E-21 8.4E-26 201.1 18.8 97 153-250 438-545 (590)
65 3jux_A Protein translocase sub 99.9 1.4E-20 4.7E-25 193.7 21.5 136 137-274 455-607 (822)
66 1z63_A Helicase of the SNF2/RA 99.8 2.6E-20 9E-25 189.3 18.6 122 140-261 325-453 (500)
67 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-20 4.6E-25 176.7 12.2 124 138-261 94-224 (271)
68 3mwy_W Chromo domain-containin 99.8 8.3E-19 2.8E-23 188.1 18.5 136 139-274 555-699 (800)
69 1z3i_X Similar to RAD54-like; 99.7 1.4E-16 4.7E-21 166.9 14.9 134 139-272 398-541 (644)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 1.4E-15 4.9E-20 165.5 22.8 106 154-260 537-708 (1038)
71 2vl7_A XPD; helicase, unknown 98.7 8.5E-08 2.9E-12 98.1 12.8 101 152-259 382-519 (540)
72 3fe2_A Probable ATP-dependent 98.5 3.9E-08 1.3E-12 89.8 2.9 60 25-128 173-237 (242)
73 3iuy_A Probable ATP-dependent 98.5 6.1E-08 2.1E-12 87.5 3.2 59 25-127 164-227 (228)
74 2ipc_A Preprotein translocase 98.4 9.4E-06 3.2E-10 85.8 19.3 39 225-263 662-700 (997)
75 1q0u_A Bstdead; DEAD protein, 98.3 2.1E-07 7.1E-12 83.5 3.3 60 25-128 147-211 (219)
76 3fmo_B ATP-dependent RNA helic 98.3 1.6E-07 5.4E-12 88.8 2.3 60 26-128 233-297 (300)
77 2pl3_A Probable ATP-dependent 98.3 2.2E-07 7.6E-12 84.2 2.9 58 26-127 169-231 (236)
78 2oxc_A Probable ATP-dependent 98.3 2.4E-07 8.3E-12 83.8 3.1 60 25-127 163-227 (230)
79 3ber_A Probable ATP-dependent 98.3 2.2E-07 7.6E-12 85.3 2.7 58 26-127 184-246 (249)
80 1vec_A ATP-dependent RNA helic 98.3 3.7E-07 1.3E-11 80.7 3.7 57 26-126 144-205 (206)
81 2gxq_A Heat resistant RNA depe 98.3 2.6E-07 8.9E-12 81.7 2.5 58 26-127 142-204 (207)
82 3bor_A Human initiation factor 98.3 2.7E-07 9.3E-12 83.9 2.6 58 26-127 171-233 (237)
83 1qde_A EIF4A, translation init 98.2 4.5E-07 1.6E-11 81.3 2.8 59 26-128 153-216 (224)
84 3ly5_A ATP-dependent RNA helic 98.2 5.3E-07 1.8E-11 83.4 2.7 49 25-117 198-246 (262)
85 1t6n_A Probable ATP-dependent 98.2 9.9E-07 3.4E-11 78.9 3.9 40 88-127 175-219 (220)
86 3dkp_A Probable ATP-dependent 98.1 1.5E-06 5.2E-11 79.1 4.4 63 25-128 172-240 (245)
87 1wrb_A DJVLGB; RNA helicase, D 98.1 9.7E-07 3.3E-11 80.9 2.9 60 25-128 171-239 (253)
88 3hgt_A HDA1 complex subunit 3; 98.1 2.9E-05 1E-09 73.4 12.5 122 139-265 108-241 (328)
89 4a15_A XPD helicase, ATP-depen 97.9 4.8E-05 1.6E-09 78.9 11.5 102 154-259 448-582 (620)
90 3crv_A XPD/RAD3 related DNA he 97.4 0.0032 1.1E-07 64.2 16.5 76 152-233 391-473 (551)
91 3llm_A ATP-dependent RNA helic 97.3 5.2E-05 1.8E-09 68.6 1.0 26 91-117 197-222 (235)
92 1rif_A DAR protein, DNA helica 96.7 0.0011 3.9E-08 61.3 4.1 26 92-117 241-266 (282)
93 3b6e_A Interferon-induced heli 95.4 0.006 2.1E-07 53.3 2.3 21 25-45 159-179 (216)
94 1gm5_A RECG; helicase, replica 95.3 0.073 2.5E-06 56.4 10.6 78 154-231 417-499 (780)
95 3oiy_A Reverse gyrase helicase 94.5 0.11 3.8E-06 50.3 9.0 79 153-231 63-148 (414)
96 2fz4_A DNA repair protein RAD2 94.3 0.03 1E-06 50.4 3.9 21 95-116 211-231 (237)
97 2eyq_A TRCF, transcription-rep 92.4 0.42 1.4E-05 52.9 9.9 76 153-228 651-731 (1151)
98 1t6n_A Probable ATP-dependent 92.1 1.7 5.8E-05 37.6 11.8 73 155-230 83-166 (220)
99 3fe2_A Probable ATP-dependent 91.9 1.7 5.9E-05 38.4 11.8 71 154-228 102-182 (242)
100 4ddu_A Reverse gyrase; topoiso 91.8 0.4 1.4E-05 52.8 8.7 79 153-231 120-205 (1104)
101 3ber_A Probable ATP-dependent 91.6 1.1 3.6E-05 40.2 10.1 73 153-229 110-193 (249)
102 2oxc_A Probable ATP-dependent 91.1 0.59 2E-05 41.2 7.7 71 153-228 91-172 (230)
103 2v1x_A ATP-dependent DNA helic 90.6 0.96 3.3E-05 46.3 9.8 59 154-212 84-144 (591)
104 1oyw_A RECQ helicase, ATP-depe 90.4 0.54 1.8E-05 47.3 7.6 75 154-228 65-145 (523)
105 2gxq_A Heat resistant RNA depe 88.9 3.9 0.00013 34.7 11.2 73 153-229 71-151 (207)
106 1vec_A ATP-dependent RNA helic 88.6 1.6 5.5E-05 37.2 8.4 71 154-228 71-152 (206)
107 1xti_A Probable ATP-dependent 88.0 4.5 0.00015 38.0 11.9 73 154-229 76-159 (391)
108 3iuy_A Probable ATP-dependent 87.9 2.6 8.9E-05 36.7 9.4 73 153-229 93-174 (228)
109 3bor_A Human initiation factor 86.9 2.9 0.0001 36.7 9.3 74 153-229 97-180 (237)
110 2pl3_A Probable ATP-dependent 86.5 3.1 0.00011 36.4 9.2 71 153-228 96-177 (236)
111 1qde_A EIF4A, translation init 85.6 1.2 4E-05 38.8 5.8 72 153-229 81-162 (224)
112 1wrb_A DJVLGB; RNA helicase, D 84.7 7.9 0.00027 34.1 11.0 72 154-229 100-181 (253)
113 1q0u_A Bstdead; DEAD protein, 80.9 3.9 0.00013 35.3 7.2 71 154-228 72-156 (219)
114 2db3_A ATP-dependent RNA helic 80.9 5.4 0.00018 38.6 9.0 73 154-230 129-211 (434)
115 2i4i_A ATP-dependent RNA helic 80.6 9.1 0.00031 36.2 10.4 70 155-228 102-181 (417)
116 1fuu_A Yeast initiation factor 80.5 4.7 0.00016 37.8 8.3 73 153-230 88-170 (394)
117 3ly5_A ATP-dependent RNA helic 80.5 6.1 0.00021 35.3 8.6 71 154-228 126-207 (262)
118 3gk5_A Uncharacterized rhodane 77.7 2 6.7E-05 33.1 3.7 38 153-190 54-91 (108)
119 3tbk_A RIG-I helicase domain; 77.7 3.3 0.00011 41.0 6.4 71 154-228 52-133 (555)
120 1tf5_A Preprotein translocase 77.6 6 0.00021 41.9 8.4 57 150-212 120-180 (844)
121 3foj_A Uncharacterized protein 77.5 2 6.8E-05 32.4 3.7 36 154-189 56-91 (100)
122 1gku_B Reverse gyrase, TOP-RG; 76.8 3.5 0.00012 45.1 6.7 74 153-228 98-181 (1054)
123 3fmo_B ATP-dependent RNA helic 76.7 2.5 8.5E-05 39.0 4.8 69 154-229 162-242 (300)
124 2fsf_A Preprotein translocase 76.7 5.5 0.00019 42.1 7.8 57 150-212 111-171 (853)
125 1wv9_A Rhodanese homolog TT165 76.6 2.4 8.2E-05 31.5 3.9 35 155-189 54-88 (94)
126 1s2m_A Putative ATP-dependent 76.5 19 0.00063 33.8 11.2 74 153-230 88-171 (400)
127 1hv8_A Putative ATP-dependent 76.3 11 0.00039 34.6 9.4 73 153-230 73-155 (367)
128 3eme_A Rhodanese-like domain p 76.2 1.9 6.6E-05 32.6 3.3 37 153-189 55-91 (103)
129 2l82_A Designed protein OR32; 76.2 12 0.00041 28.8 7.6 52 157-208 5-56 (162)
130 4a2p_A RIG-I, retinoic acid in 75.4 4.7 0.00016 40.0 6.8 73 154-230 55-138 (556)
131 1wp9_A ATP-dependent RNA helic 75.0 15 0.00051 35.0 10.2 72 153-229 51-132 (494)
132 3g5j_A Putative ATP/GTP bindin 75.0 4.6 0.00016 31.7 5.4 36 155-190 90-126 (134)
133 3dkp_A Probable ATP-dependent 74.8 4.1 0.00014 35.8 5.6 73 154-229 98-182 (245)
134 1nkt_A Preprotein translocase 74.6 8.1 0.00028 41.1 8.4 58 149-212 147-208 (922)
135 3iwh_A Rhodanese-like domain p 74.5 2.3 7.9E-05 32.5 3.3 35 154-188 56-90 (103)
136 4a2q_A RIG-I, retinoic acid in 74.4 6.2 0.00021 41.6 7.7 71 154-228 296-377 (797)
137 3eiq_A Eukaryotic initiation f 74.3 9.6 0.00033 36.0 8.5 73 153-228 107-189 (414)
138 2j0s_A ATP-dependent RNA helic 73.2 29 0.001 32.6 11.6 73 153-229 104-186 (410)
139 2ipc_A Preprotein translocase 72.5 7.5 0.00026 41.6 7.5 59 149-213 115-177 (997)
140 2z0m_A 337AA long hypothetical 70.8 19 0.00063 32.7 9.3 71 154-229 56-136 (337)
141 3hix_A ALR3790 protein; rhodan 69.9 3.9 0.00013 31.2 3.6 38 153-190 51-89 (106)
142 3nhv_A BH2092 protein; alpha-b 66.9 4.5 0.00016 32.8 3.7 37 154-190 72-110 (144)
143 2k0z_A Uncharacterized protein 66.2 7.3 0.00025 29.8 4.6 38 152-189 54-91 (110)
144 3flh_A Uncharacterized protein 66.1 3.1 0.00011 32.7 2.4 36 154-189 71-108 (124)
145 1gmx_A GLPE protein; transfera 65.5 4.4 0.00015 30.9 3.1 38 153-190 57-95 (108)
146 2jtq_A Phage shock protein E; 65.4 8.2 0.00028 27.8 4.5 36 153-189 40-76 (85)
147 1tq1_A AT5G66040, senescence-a 64.5 4.9 0.00017 31.8 3.3 38 153-190 81-119 (129)
148 2hhg_A Hypothetical protein RP 64.2 5.1 0.00017 31.9 3.4 37 153-189 85-122 (139)
149 1z3i_X Similar to RAD54-like; 64.0 6.4 0.00022 40.4 4.9 16 28-43 192-207 (644)
150 1qxn_A SUD, sulfide dehydrogen 64.0 4.9 0.00017 32.2 3.3 38 153-190 81-119 (137)
151 2fsx_A RV0390, COG0607: rhodan 64.0 6.4 0.00022 31.9 4.1 37 153-189 79-116 (148)
152 3b6e_A Interferon-induced heli 63.9 6.6 0.00023 33.3 4.4 55 154-212 82-140 (216)
153 2ykg_A Probable ATP-dependent 61.4 12 0.00041 38.4 6.5 72 155-230 62-144 (696)
154 3d1p_A Putative thiosulfate su 61.0 6.4 0.00022 31.4 3.5 37 153-189 90-127 (139)
155 2fz4_A DNA repair protein RAD2 60.0 34 0.0012 29.9 8.4 59 140-212 120-179 (237)
156 4a2w_A RIG-I, retinoic acid in 59.3 17 0.00058 39.1 7.4 72 154-229 296-378 (936)
157 3ilm_A ALR3790 protein; rhodan 58.5 7.9 0.00027 31.2 3.6 36 154-189 56-92 (141)
158 1vee_A Proline-rich protein fa 56.0 9 0.00031 30.4 3.5 37 153-189 73-110 (134)
159 2fwr_A DNA repair protein RAD2 54.2 30 0.001 33.4 7.8 46 154-212 133-179 (472)
160 3l9o_A ATP-dependent RNA helic 54.0 19 0.00066 39.5 6.8 67 153-230 226-298 (1108)
161 4gl2_A Interferon-induced heli 53.0 3.6 0.00012 42.4 0.8 70 155-228 57-142 (699)
162 3h11_B Caspase-8; cell death, 53.0 23 0.00079 32.1 6.1 49 153-202 16-85 (271)
163 4f67_A UPF0176 protein LPG2838 52.8 15 0.00052 33.2 4.9 48 143-190 170-218 (265)
164 3e4c_A Caspase-1; zymogen, inf 50.2 31 0.0011 31.7 6.6 47 155-202 61-118 (302)
165 3pey_A ATP-dependent RNA helic 48.0 67 0.0023 29.5 8.9 70 153-230 74-153 (395)
166 3h11_A CAsp8 and FADD-like apo 46.6 9 0.00031 34.9 2.3 50 153-203 42-91 (272)
167 3tg1_B Dual specificity protei 45.7 14 0.00048 30.2 3.2 36 154-189 93-137 (158)
168 3sqw_A ATP-dependent RNA helic 45.6 15 0.00053 36.8 4.1 71 155-228 96-181 (579)
169 3i5x_A ATP-dependent RNA helic 44.7 18 0.00063 35.9 4.5 71 155-228 147-232 (563)
170 1w36_D RECD, exodeoxyribonucle 44.2 16 0.00056 37.1 4.0 20 91-110 277-296 (608)
171 1uar_A Rhodanese; sulfurtransf 43.6 32 0.0011 30.9 5.6 37 153-189 232-270 (285)
172 1urh_A 3-mercaptopyruvate sulf 43.2 21 0.00073 32.0 4.3 39 153-191 229-268 (280)
173 3fht_A ATP-dependent RNA helic 42.6 27 0.00092 32.7 5.1 70 154-230 95-176 (412)
174 2p6r_A Afuhel308 helicase; pro 41.9 35 0.0012 35.1 6.2 68 154-228 68-144 (702)
175 2oca_A DAR protein, ATP-depend 41.7 74 0.0025 30.9 8.4 71 153-230 156-233 (510)
176 1qtn_A Caspase-8; apoptosis, d 41.4 53 0.0018 27.2 6.1 39 164-203 54-92 (164)
177 2h54_A Caspase-1; allosteric s 40.6 69 0.0023 26.9 6.8 47 155-202 44-101 (178)
178 2va8_A SSO2462, SKI2-type heli 40.2 34 0.0012 35.2 5.8 68 154-228 75-151 (715)
179 2eg4_A Probable thiosulfate su 38.6 23 0.0008 30.7 3.7 38 153-190 183-220 (230)
180 2dko_A Caspase-3; low barrier 37.7 50 0.0017 26.8 5.3 49 154-203 16-78 (146)
181 2q5c_A NTRC family transcripti 37.5 1.8E+02 0.0063 24.4 10.0 120 154-284 4-127 (196)
182 3i2v_A Adenylyltransferase and 37.1 24 0.00082 27.1 3.2 35 156-190 74-115 (127)
183 3p45_A Caspase-6; protease, hu 36.7 68 0.0023 27.0 6.1 49 154-203 44-106 (179)
184 3od5_A Caspase-6; caspase doma 36.5 65 0.0022 29.1 6.4 49 154-203 21-83 (278)
185 3zyw_A Glutaredoxin-3; metal b 35.9 1.4E+02 0.0047 22.5 7.7 55 154-208 15-75 (111)
186 1pyo_A Caspase-2; apoptosis, c 35.8 71 0.0024 26.5 6.1 48 154-202 33-94 (167)
187 4fn4_A Short chain dehydrogena 35.3 1.2E+02 0.004 26.9 7.9 59 154-212 31-92 (254)
188 1m72_A Caspase-1; caspase, cys 34.6 1.1E+02 0.0038 27.4 7.7 40 163-203 54-93 (272)
189 2j32_A Caspase-3; Pro-caspase3 33.7 1E+02 0.0036 27.2 7.3 48 155-203 17-78 (250)
190 1e0c_A Rhodanese, sulfurtransf 33.5 27 0.00092 31.1 3.3 37 153-189 222-259 (271)
191 3dmn_A Putative DNA helicase; 33.5 1.5E+02 0.0052 24.2 7.9 64 154-232 61-124 (174)
192 1c4o_A DNA nucleotide excision 33.2 2.8E+02 0.0094 28.3 11.3 79 139-218 39-144 (664)
193 1urh_A 3-mercaptopyruvate sulf 33.0 39 0.0013 30.2 4.3 38 153-190 85-124 (280)
194 2zj8_A DNA helicase, putative 32.6 45 0.0015 34.4 5.2 70 154-230 68-146 (720)
195 2yan_A Glutaredoxin-3; oxidore 32.2 1.5E+02 0.0051 21.7 8.0 55 154-208 16-76 (105)
196 3fmp_B ATP-dependent RNA helic 32.1 1.1E+02 0.0036 29.5 7.6 68 155-229 163-242 (479)
197 2xgj_A ATP-dependent RNA helic 31.7 52 0.0018 35.7 5.7 66 153-229 128-199 (1010)
198 2ouc_A Dual specificity protei 31.3 25 0.00084 27.5 2.4 36 154-189 83-127 (142)
199 2wlr_A Putative thiosulfate su 31.1 55 0.0019 31.4 5.3 38 153-190 202-240 (423)
200 3aay_A Putative thiosulfate su 30.9 65 0.0022 28.5 5.5 37 153-189 225-263 (277)
201 2nn3_C Caspase-1; cysteine pro 30.7 83 0.0028 29.0 6.2 49 154-203 60-121 (310)
202 1rhs_A Sulfur-substituted rhod 30.7 48 0.0016 29.9 4.6 38 153-190 239-277 (296)
203 3ipz_A Monothiol glutaredoxin- 30.4 1.7E+02 0.0057 21.8 8.6 55 154-208 17-77 (109)
204 1rif_A DAR protein, DNA helica 30.3 80 0.0027 28.0 6.0 52 154-212 157-212 (282)
205 4a4z_A Antiviral helicase SKI2 30.2 74 0.0025 34.4 6.6 65 153-228 81-153 (997)
206 3sir_A Caspase; hydrolase; 2.6 30.2 95 0.0033 27.6 6.4 55 163-219 42-99 (259)
207 4ehd_A Caspase-3; caspase, apo 29.5 1.3E+02 0.0046 27.0 7.3 74 163-242 67-143 (277)
208 2fp3_A Caspase NC; apoptosis, 29.3 84 0.0029 29.0 6.0 87 154-242 61-164 (316)
209 2wci_A Glutaredoxin-4; redox-a 29.2 1.7E+02 0.0057 23.1 7.1 63 143-208 26-94 (135)
210 3aay_A Putative thiosulfate su 29.2 74 0.0025 28.2 5.5 38 153-190 76-115 (277)
211 1e0c_A Rhodanese, sulfurtransf 29.2 66 0.0023 28.4 5.2 37 153-189 80-118 (271)
212 1u6t_A SH3 domain-binding glut 28.7 82 0.0028 24.7 4.9 40 161-200 13-52 (121)
213 2j6p_A SB(V)-AS(V) reductase; 27.8 77 0.0026 25.4 4.9 38 154-191 67-113 (152)
214 1wik_A Thioredoxin-like protei 27.4 1.9E+02 0.0064 21.4 7.2 55 154-208 14-74 (109)
215 3o8b_A HCV NS3 protease/helica 27.2 1E+02 0.0035 31.7 6.6 66 154-230 257-326 (666)
216 3hzu_A Thiosulfate sulfurtrans 26.8 75 0.0026 29.1 5.2 37 153-189 110-148 (318)
217 3ntd_A FAD-dependent pyridine 25.9 46 0.0016 33.0 3.8 37 154-190 524-560 (565)
218 1uar_A Rhodanese; sulfurtransf 24.5 67 0.0023 28.6 4.3 38 153-190 78-117 (285)
219 3hjh_A Transcription-repair-co 24.1 5E+02 0.017 25.2 11.7 109 137-246 23-149 (483)
220 3fho_A ATP-dependent RNA helic 23.8 1.3E+02 0.0044 29.4 6.6 67 154-228 189-265 (508)
221 2eg4_A Probable thiosulfate su 23.7 69 0.0024 27.6 4.1 33 154-187 61-95 (230)
222 2j48_A Two-component sensor ki 23.5 1.5E+02 0.0051 21.0 5.6 31 155-185 2-32 (119)
223 2wem_A Glutaredoxin-related pr 23.4 2.5E+02 0.0085 21.4 7.7 44 155-198 20-70 (118)
224 1g5t_A COB(I)alamin adenosyltr 23.1 50 0.0017 28.3 2.9 32 91-122 141-172 (196)
225 1yt8_A Thiosulfate sulfurtrans 23.0 66 0.0022 32.0 4.3 37 153-189 321-358 (539)
226 2l82_A Designed protein OR32; 22.3 2.6E+02 0.009 21.3 7.9 65 143-207 66-132 (162)
227 3gr1_A Protein PRGH; type III 22.1 2.8E+02 0.0095 24.2 7.6 63 154-235 26-91 (227)
228 1qkk_A DCTD, C4-dicarboxylate 22.0 2.7E+02 0.0091 21.3 15.9 93 155-273 4-97 (155)
229 3ics_A Coenzyme A-disulfide re 22.0 59 0.002 32.5 3.7 37 154-190 541-577 (588)
230 1nw9_B Caspase 9, apoptosis-re 21.8 1.1E+02 0.0038 27.4 5.2 49 154-203 21-83 (277)
231 3hjh_A Transcription-repair-co 21.7 64 0.0022 31.7 3.8 75 143-230 372-446 (483)
232 3olh_A MST, 3-mercaptopyruvate 21.7 53 0.0018 29.9 3.0 37 154-190 254-291 (302)
233 2ql9_A Caspase-7; cysteine pro 21.5 1.1E+02 0.0039 25.4 4.8 48 155-203 45-106 (173)
234 4a15_A XPD helicase, ATP-depen 21.1 26 0.0009 35.7 0.8 16 28-43 204-219 (620)
235 3gr0_A Protein PRGH; type III 21.0 2.8E+02 0.0096 23.6 7.2 63 154-235 26-91 (197)
236 2r2a_A Uncharacterized protein 20.7 34 0.0012 29.2 1.4 13 29-41 88-100 (199)
237 2d7d_A Uvrabc system protein B 20.6 4.7E+02 0.016 26.5 10.2 105 140-245 44-179 (661)
238 3cg4_A Response regulator rece 20.1 2.7E+02 0.0094 20.7 6.9 27 156-182 9-35 (142)
239 1t1v_A SH3BGRL3, SH3 domain-bi 20.1 1.5E+02 0.0053 21.1 4.9 46 156-201 3-55 (93)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-35 Score=293.93 Aligned_cols=203 Identities=30% Similarity=0.443 Sum_probs=171.6
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHC--CC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAY--CW 102 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~--~~ 102 (396)
.+.+++++|+||||++.++||.+.+ ..|+..+ ++
T Consensus 200 ~l~~~~~lVlDEah~~~~~gf~~~~--------------------------------------------~~i~~~~~~~~ 235 (434)
T 2db3_A 200 TFEDTRFVVLDEADRMLDMGFSEDM--------------------------------------------RRIMTHVTMRP 235 (434)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHH--------------------------------------------HHHHHCTTSCS
T ss_pred ccccCCeEEEccHhhhhccCcHHHH--------------------------------------------HHHHHhcCCCC
Confidence 3667899999999998887765444 6667664 67
Q ss_pred CCcEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHH
Q psy3145 103 SKGTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREA 167 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~ 167 (396)
++|+++||||+|+.+ .++.+|..+.+ ..... ......|...|..++..... ++||||+|++.|
T Consensus 236 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~-~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a 313 (434)
T 2db3_A 236 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY-EVNKYAKRSKLIEILSEQAD-GTIVFVETKRGA 313 (434)
T ss_dssp SCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEE-ECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHH
T ss_pred CceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEE-EeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHH
Confidence 899999999999987 56778877765 11111 22345677888888866554 499999999999
Q ss_pred HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhccc
Q psy3145 168 HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 168 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR 247 (396)
+.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|||||+|++...|+||+||+||
T Consensus 314 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR 393 (434)
T 2db3_A 314 DFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGR 393 (434)
T ss_dssp HHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEcC-ccHHHHHHHHHHc
Q psy3145 248 AGKGGVSVSMAGE-VDRKLVKQVIKNA 273 (396)
Q Consensus 248 ~g~~g~~i~l~~~-~e~~~~~~i~~~~ 273 (396)
.|+.|.+++|+++ .+....+.+.+.+
T Consensus 394 ~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 394 VGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp TTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999994 4555555555544
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.4e-34 Score=286.96 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=185.4
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++| ...+..++..++++.|
T Consensus 177 ~~~~~~vViDEah~~~~~~~--------------------------------------------~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 177 TRAIKMLVLDEADEMLNKGF--------------------------------------------KEQIYDVYRYLPPATQ 212 (410)
T ss_dssp CTTCCEEEEETHHHHTSTTT--------------------------------------------HHHHHHHHTTSCTTCE
T ss_pred HhheeEEEEccHHHHHhhhh--------------------------------------------HHHHHHHHHhCccCce
Confidence 45688999999998877654 3445778888899999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
++++|||+|+.+ .++.+|..+.+ ............|...+..++.....+++||||++++.++.+
T Consensus 213 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 292 (410)
T 2j0s_A 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 292 (410)
T ss_dssp EEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHH
Confidence 999999999987 45667766544 222222233455888888888877788999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
+..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|+++..|+||+||+||.|+
T Consensus 293 ~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 293 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 372 (410)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred HHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHHHHcCCCCccccC
Q psy3145 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHRII 282 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~ 282 (396)
.|.+++|+++.+...++.+.+.++..+...++
T Consensus 373 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 373 KGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999887765443
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=283.16 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=170.1
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++|. ..+..++..++++.|
T Consensus 181 ~~~~~~vViDEah~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 216 (414)
T 3eiq_A 181 PKYIKMFVLDEADEMLSRGFK--------------------------------------------DQIYDIFQKLNSNTQ 216 (414)
T ss_dssp STTCCEEEECSHHHHHHTTTH--------------------------------------------HHHHHHHTTSCTTCE
T ss_pred cccCcEEEEECHHHhhccCcH--------------------------------------------HHHHHHHHhCCCCCe
Confidence 455889999999988776543 445778888889999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
++++|||+++.+ .++.+|..+.. ....+.......+...+..++.....+++||||++++.++.+
T Consensus 217 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 296 (414)
T 3eiq_A 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWL 296 (414)
T ss_dssp EEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHH
T ss_pred EEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH
Confidence 999999999887 55667766544 222333334456888999999888888999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|+|+..|+||+||+||.|+
T Consensus 297 ~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 376 (414)
T 3eiq_A 297 TEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGR 376 (414)
T ss_dssp HHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-----
T ss_pred HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHHHHcCCCCccc
Q psy3145 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~ 280 (396)
.|.|++|+++.+...++.+.+.++..+...
T Consensus 377 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 377 KGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp --CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999988776643
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.9e-33 Score=288.03 Aligned_cols=216 Identities=25% Similarity=0.315 Sum_probs=174.0
Q ss_pred hcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH----
Q psy3145 24 KEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA---- 99 (396)
Q Consensus 24 ~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~---- 99 (396)
..+..++++||||||++.+|||++.+ ..+...+..
T Consensus 171 ~~~~~~~~lViDEah~l~~~gf~~~~-----------------------------------------~~i~~~l~~~~~~ 209 (579)
T 3sqw_A 171 KFFRFVDYKVLDEADRLLEIGFRDDL-----------------------------------------ETISGILNEKNSK 209 (579)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHH-----------------------------------------HHHHHHHHHHCSS
T ss_pred cccccCCEEEEEChHHhhcCCCHHHH-----------------------------------------HHHHHHhhhhhcc
Confidence 35677999999999999999887766 122222222
Q ss_pred CCCCCcEEEEeecCChhh-----hccCCCeEEEE---------------EEEEEecCChhhHHHHH---HHHHhh-cCCC
Q psy3145 100 YCWSKGTFQSNASMTSFL-----FLLRPPVLLCL---------------LCFRIRKDTHLDRKALL---AALVCR-TFKD 155 (396)
Q Consensus 100 ~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~---------------~~~~~~~~~~~~k~~~l---~~ll~~-~~~~ 155 (396)
.+.++|+++||||+|+.+ ..+.+|..+.+ ..+.........+...+ ...+.. ..+.
T Consensus 210 ~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (579)
T 3sqw_A 210 SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNY 289 (579)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCC
Confidence 234789999999999987 45666665543 12222222222232333 222322 4567
Q ss_pred cEEEEeCChHHHHHHHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC
Q psy3145 156 HTMIFVPTKREAHEMHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p 232 (396)
++||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred cEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC
Confidence 9999999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccc
Q psy3145 233 HSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 233 ~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~ 280 (396)
.++..|+||+|||||.|+.|.|++|+++.|...++.+++..+..+...
T Consensus 370 ~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 370 SELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred CCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999887766543
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.6e-33 Score=286.47 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=172.4
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH----C
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA----Y 100 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~----~ 100 (396)
.+..++++||||||++.++||++.+ ..+...+.. .
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~-----------------------------------------~~i~~~l~~~~~~~ 261 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDL-----------------------------------------ETISGILNEKNSKS 261 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHH-----------------------------------------HHHHHHHHHHCSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHH-----------------------------------------HHHHHhhhhccccC
Confidence 5677999999999999999887766 112222222 2
Q ss_pred CCCCcEEEEeecCChhh-----hccCCCeEEEE---------------EEEEEecCChhhHHHHHH---HHHh-hcCCCc
Q psy3145 101 CWSKGTFQSNASMTSFL-----FLLRPPVLLCL---------------LCFRIRKDTHLDRKALLA---ALVC-RTFKDH 156 (396)
Q Consensus 101 ~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~---------------~~~~~~~~~~~~k~~~l~---~ll~-~~~~~~ 156 (396)
+.++|+++||||+|+.+ ..+.+|..+.. ..+.............+. ..+. ...+.+
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 341 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCc
Confidence 34789999999999876 45556655443 122222222222222222 2222 245789
Q ss_pred EEEEeCChHHHHHHHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC
Q psy3145 157 TMIFVPTKREAHEMHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH 233 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~ 233 (396)
+||||+|+..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|.
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~ 421 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS 421 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCS
T ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCC
Confidence 999999999999999999887 89999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccc
Q psy3145 234 SLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 234 s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~ 280 (396)
++..|+||+|||||.|+.|.|++|+++.+...++.+++..+.++...
T Consensus 422 s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 422 ELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp STTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred chhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999998887666543
No 6
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.6e-33 Score=271.46 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=174.8
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+.. ++...+..+...++.+.|
T Consensus 143 ~~~~~~iIiDEah~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~ 179 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQ-------------------------------------------GLGDQCIRVKRFLPKDTQ 179 (395)
T ss_dssp CTTCCEEEEETHHHHHHST-------------------------------------------THHHHHHHHHHTSCTTCE
T ss_pred cccCCEEEEEChhhhcCcc-------------------------------------------ccHHHHHHHHHhCCCCcE
Confidence 5678899999999876621 234556778888899999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
++++|||+++.+ ..+.+|..+.. ............+...+..++.....+++||||+++..++.+
T Consensus 180 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 259 (395)
T 3pey_A 180 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVL 259 (395)
T ss_dssp EEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHH
Confidence 999999999877 34455554433 233333445667888888888877789999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC------ChhHHHHHHhh
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH------SLEHYIHRVGR 244 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~------s~~~y~qr~GR 244 (396)
+..|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+ |+..|+||+||
T Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR 339 (395)
T 3pey_A 260 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGR 339 (395)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTT
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCCCCceEEEEEcCc-cHHHHHHHHHHcC
Q psy3145 245 TARAGKGGVSVSMAGEV-DRKLVKQVIKNAK 274 (396)
Q Consensus 245 agR~g~~g~~i~l~~~~-e~~~~~~i~~~~~ 274 (396)
+||.|+.|.+++++.+. +...++.+.+..+
T Consensus 340 ~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 340 TGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999864 4566677777665
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-32 Score=271.86 Aligned_cols=193 Identities=22% Similarity=0.362 Sum_probs=167.8
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhc
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRT 152 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~ 152 (396)
++...+..+...++.+.|++++|||+++.+ ..+.+|..+.. ....+.......+...+..++...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (412)
T 3fht_A 185 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 264 (412)
T ss_dssp TTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhc
Confidence 345566788888999999999999999987 55666665544 233334445567888888888887
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p 232 (396)
..+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 344 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------ChhHHHHHHhhcccCCCCceEEEEEcCcc-HHHHHHHHHHcCCCCccc
Q psy3145 233 H------SLEHYIHRVGRTARAGKGGVSVSMAGEVD-RKLVKQVIKNAKNPVKHR 280 (396)
Q Consensus 233 ~------s~~~y~qr~GRagR~g~~g~~i~l~~~~e-~~~~~~i~~~~~~~~~~~ 280 (396)
+ +...|+||+||+||.|+.|.+++++++.+ ...++.+.+..+..+...
T Consensus 345 ~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 345 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp BCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred CCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 4 67899999999999999999999998764 788889998888766643
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.2e-33 Score=274.55 Aligned_cols=190 Identities=19% Similarity=0.293 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE---------EEEEEecCChhhHHHHHHHHHhhcCC
Q psy3145 89 EYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL---------LCFRIRKDTHLDRKALLAALVCRTFK 154 (396)
Q Consensus 89 ~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~---------~~~~~~~~~~~~k~~~l~~ll~~~~~ 154 (396)
|...+..++..+++..|++++|||+|..+ ..+.+|..+.. ..+.. ......|...+..++.....
T Consensus 180 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~~~~~~~ 258 (400)
T 1s2m_A 180 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYA-FVEERQKLHCLNTLFSKLQI 258 (400)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEE-ECCGGGHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEE-EechhhHHHHHHHHHhhcCC
Confidence 34566778888888999999999999887 45566655433 11111 22455788888888888778
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCC
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHS 234 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s 234 (396)
+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|+|
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s 338 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKT 338 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSS
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCcc
Q psy3145 235 LEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 235 ~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~ 279 (396)
+..|+||+||+||.|+.|.|++|+++.|...++++++.++..+..
T Consensus 339 ~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 383 (400)
T 1s2m_A 339 AETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAA 383 (400)
T ss_dssp HHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999877764
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=275.37 Aligned_cols=205 Identities=30% Similarity=0.447 Sum_probs=171.3
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH--CCC-
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA--YCW- 102 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~--~~~- 102 (396)
+.+++++|+||||++.+++|.+.+ ..++.. ++.
T Consensus 173 ~~~~~~iViDEah~~~~~~~~~~~--------------------------------------------~~i~~~~~~~~~ 208 (417)
T 2i4i_A 173 LDFCKYLVLDEADRMLDMGFEPQI--------------------------------------------RRIVEQDTMPPK 208 (417)
T ss_dssp CTTCCEEEESSHHHHHHTTCHHHH--------------------------------------------HHHHTSSSCCCB
T ss_pred hhhCcEEEEEChhHhhccCcHHHH--------------------------------------------HHHHHhccCCCc
Confidence 567889999999998888765544 444442 232
Q ss_pred -CCcEEEEeecCChhh-----hccCCCeEEEE---------EEEEEecCChhhHHHHHHHHHhhc-CCCcEEEEeCChHH
Q psy3145 103 -SKGTFQSNASMTSFL-----FLLRPPVLLCL---------LCFRIRKDTHLDRKALLAALVCRT-FKDHTMIFVPTKRE 166 (396)
Q Consensus 103 -~~q~ll~SAT~~~~~-----~~l~~p~~i~~---------~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~t~~~ 166 (396)
..|++++|||+|+.+ .++.+|..+.+ ....+.......|...+..++... .++++||||++++.
T Consensus 209 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~ 288 (417)
T 2i4i_A 209 GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKG 288 (417)
T ss_dssp TTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHH
T ss_pred CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 689999999999876 55677766554 111112224467888888888765 46799999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcc
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|+|...|+||+||+|
T Consensus 289 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (417)
T 2i4i_A 289 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368 (417)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 247 RAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 247 R~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
|.|+.|.+++|+++.+...++.+.+.+.
T Consensus 369 R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 369 RVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp C--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred cCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999888888877653
No 10
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-32 Score=283.87 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=164.8
Q ss_pred ccceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCC
Q psy3145 26 VEGLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWS 103 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~ 103 (396)
+..++++||||||++.+|| |+|.+ ..+.. +....++
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~-----------------------------------------~~l~~-l~~~~~~ 200 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDY-----------------------------------------KALGI-LKRQFPN 200 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGG-----------------------------------------GGGGH-HHHHCTT
T ss_pred ccCCcEEEEECcccccccccccHHHH-----------------------------------------HHHHH-HHHhCCC
Confidence 4479999999999999999 88887 01122 3333457
Q ss_pred CcEEEEeecCChhh-----hccC--CCeEEEE------EEEEEecC--ChhhHHHHHHHHHhh-cCCCcEEEEeCChHHH
Q psy3145 104 KGTFQSNASMTSFL-----FLLR--PPVLLCL------LCFRIRKD--THLDRKALLAALVCR-TFKDHTMIFVPTKREA 167 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~--~p~~i~~------~~~~~~~~--~~~~k~~~l~~ll~~-~~~~~~iIF~~t~~~~ 167 (396)
.|++++|||+++.+ ..+. .|..+.. .++.+... ....+...+..++.. ..+.++||||+|++.+
T Consensus 201 ~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~ 280 (591)
T 2v1x_A 201 ASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDS 280 (591)
T ss_dssp SEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHH
T ss_pred CcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHH
Confidence 99999999999976 2333 3333322 22333322 223455666666643 3568999999999999
Q ss_pred HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhccc
Q psy3145 168 HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247 (396)
Q Consensus 168 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR 247 (396)
+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.|+..|+||+|||||
T Consensus 281 e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR 360 (591)
T 2v1x_A 281 EQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360 (591)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEcCccHHHHHHHH
Q psy3145 248 AGKGGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 248 ~g~~g~~i~l~~~~e~~~~~~i~ 270 (396)
.|++|.|++|+++.|...+..+.
T Consensus 361 ~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 361 DDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TSSCEEEEEEECHHHHHHHHHHT
T ss_pred CCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999988776655543
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.8e-32 Score=267.12 Aligned_cols=191 Identities=23% Similarity=0.364 Sum_probs=166.4
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE-----------EEEEEecCChhhHHHHHHHHHhh
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL-----------LCFRIRKDTHLDRKALLAALVCR 151 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~-----------~~~~~~~~~~~~k~~~l~~ll~~ 151 (396)
++...+..++...+...|++++|||+++.+ .++.+|..+.. ..... ......|...+..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~ 247 (391)
T 1xti_A 169 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV-KLKDNEKNRKLFDLLDV 247 (391)
T ss_dssp HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEE-ECCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEE-EcCchhHHHHHHHHHHh
Confidence 445677888898999999999999999876 55667766544 12222 22445688888888888
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM 231 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~ 231 (396)
..++++||||++++.++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhcccCCCCceEEEEEcCc-cHHHHHHHHHHcCCCCcc
Q psy3145 232 PHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 232 p~s~~~y~qr~GRagR~g~~g~~i~l~~~~-e~~~~~~i~~~~~~~~~~ 279 (396)
|+|+..|+||+||+||.|+.|.+++++++. +...++.+.+.++.++..
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 999999999999999999999999999876 557788888888776654
No 12
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-32 Score=279.42 Aligned_cols=202 Identities=16% Similarity=0.263 Sum_probs=169.2
Q ss_pred cceeEEEeccccccccCC--CCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 27 EGLRVYVETEACPKANLG--WYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 27 ~~l~~lViDEAh~~~~~g--f~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+++++||||||++.+|| |+|.+ ..+..+...+| +.
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~-----------------------------------------~~l~~l~~~~~-~~ 175 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEY-----------------------------------------AALGQLRQRFP-TL 175 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHH-----------------------------------------HGGGGHHHHCT-TS
T ss_pred CCCCEEEEeCccccCcCCCccHHHH-----------------------------------------HHHHHHHHhCC-CC
Confidence 579999999999999998 67666 11233445554 68
Q ss_pred cEEEEeecCChhh-------hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHH
Q psy3145 105 GTFQSNASMTSFL-------FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMH 171 (396)
Q Consensus 105 q~ll~SAT~~~~~-------~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~ 171 (396)
|++++|||+++.+ ..+.+|..+.. ..+.+... ..+...+..++....++++||||+|++.++.++
T Consensus 176 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~--~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~ 253 (523)
T 1oyw_A 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK--FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (523)
T ss_dssp CEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC--SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC--CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHH
Confidence 9999999999886 23455543322 22222222 346667777777767789999999999999999
Q ss_pred HHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC
Q psy3145 172 ILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251 (396)
Q Consensus 172 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 251 (396)
..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|+|+..|+||+|||||.|++
T Consensus 254 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 254 ARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred HHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCccHHHHHHHHHH
Q psy3145 252 GVSVSMAGEVDRKLVKQVIKN 272 (396)
Q Consensus 252 g~~i~l~~~~e~~~~~~i~~~ 272 (396)
|.|++|+++.|...++.+...
T Consensus 334 ~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 334 AEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp EEEEEEECHHHHHHHHHHHHT
T ss_pred ceEEEEeCHHHHHHHHHHHhc
Confidence 999999999888877776654
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-32 Score=264.29 Aligned_cols=208 Identities=29% Similarity=0.452 Sum_probs=178.9
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++| ...+..++..++++.+
T Consensus 145 ~~~~~~iIiDEah~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGF--------------------------------------------IKDVEKILNACNKDKR 180 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTT--------------------------------------------HHHHHHHHHTSCSSCE
T ss_pred cccCCEEEEeCchHhhhhch--------------------------------------------HHHHHHHHHhCCCCce
Confidence 56788999999998877654 3455778888889999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILL 174 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L 174 (396)
++++|||+++.. .++.++..+.. ....+. .....+...+..++. ..+.++||||++++.++.++..|
T Consensus 181 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 181 ILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVE-VNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEE-CCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHH
T ss_pred EEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEE-eChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHH
Confidence 999999999886 34555544433 222222 234567888888775 45679999999999999999999
Q ss_pred HhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceE
Q psy3145 175 GLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254 (396)
Q Consensus 175 ~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~ 254 (396)
...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|+.|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 338 (367)
T 1hv8_A 259 RDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 338 (367)
T ss_dssp HHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE
T ss_pred HhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccHHHHHHHHHHcCCCCcc
Q psy3145 255 VSMAGEVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 255 i~l~~~~e~~~~~~i~~~~~~~~~~ 279 (396)
++++++.+...++.+++.++..+..
T Consensus 339 ~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 339 ISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp EEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EEEEcHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999998877654
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=2.6e-33 Score=275.49 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=46.8
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++| ...+..++..+++..|
T Consensus 160 ~~~~~~vIiDEah~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~ 195 (394)
T 1fuu_A 160 TDKIKMFILDEADEMLSSGF--------------------------------------------KEQIYQIFTLLPPTTQ 195 (394)
T ss_dssp CTTCCEEEEETHHHHHHTTC--------------------------------------------HHHHHHHHHHSCTTCE
T ss_pred hhhCcEEEEEChHHhhCCCc--------------------------------------------HHHHHHHHHhCCCCce
Confidence 45688999999998877654 3445778888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
++++|||+++.+ .++.+|..+.. ............+...+..++.....+++||||++++.++.+
T Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 196 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 999999999876 56777877655 111111122234667777777666678999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
+..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|+
T Consensus 276 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 276 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHHHHcCCCCc
Q psy3145 251 GGVSVSMAGEVDRKLVKQVIKNAKNPVK 278 (396)
Q Consensus 251 ~g~~i~l~~~~e~~~~~~i~~~~~~~~~ 278 (396)
+|.|++++++.+...++.+.+.++..+.
T Consensus 356 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 356 KGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ----------------------------
T ss_pred CceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 9999999999998888888887766554
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=4.1e-33 Score=282.55 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhc
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRT 152 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~ 152 (396)
+|...+..+.+.++.++|+++||||+++.+ ..+.+|..+.+ ....+.......+...+..++...
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhc
Confidence 455667788888999999999999999987 56677776655 111111222345677777777766
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p 232 (396)
..+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p 411 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------ChhHHHHHHhhcccCCCCceEEEEEcCcc-HHHHHHHHHHcCCCCc
Q psy3145 233 H------SLEHYIHRVGRTARAGKGGVSVSMAGEVD-RKLVKQVIKNAKNPVK 278 (396)
Q Consensus 233 ~------s~~~y~qr~GRagR~g~~g~~i~l~~~~e-~~~~~~i~~~~~~~~~ 278 (396)
. +...|+||+|||||.|+.|.+++|+++.+ ...++.+.+.++..+.
T Consensus 412 ~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~ 464 (479)
T 3fmp_B 412 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 464 (479)
T ss_dssp -----------------------------------------------------
T ss_pred CCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCce
Confidence 5 56899999999999999999999998654 6777777776655443
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.5e-30 Score=248.72 Aligned_cols=197 Identities=27% Similarity=0.333 Sum_probs=159.8
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.++++ ...+..++...+...+
T Consensus 127 ~~~~~~iViDEah~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~ 162 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGF--------------------------------------------IDDIKIILAQTSNRKI 162 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTC--------------------------------------------HHHHHHHHHHCTTCSE
T ss_pred hhhCcEEEEEChHHhhcccc--------------------------------------------HHHHHHHHhhCCcccE
Confidence 56788999999998877654 3445778888888999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE-------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL-------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHIL 173 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~-------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~ 173 (396)
++++|||+|+.. .++.++..+.. ....+.... ..+. ....+....++++||||++++.++.++..
T Consensus 163 ~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 239 (337)
T 2z0m_A 163 TGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKD-DWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRL 239 (337)
T ss_dssp EEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSS-SSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTT
T ss_pred EEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeCh-HHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHH
Confidence 999999999987 45556655443 222222211 1221 22445566678999999999999999998
Q ss_pred HHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce
Q psy3145 174 LGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253 (396)
Q Consensus 174 L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~ 253 (396)
|. .+..+||++++.+|.++++.|++|+.++||||+++++|+|+|++++||+|+.|+|+..|+||+||+||.|+.|.
T Consensus 240 l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 240 FD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp CT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred hh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 86 68899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCccHHHHHHHHHHcC
Q psy3145 254 SVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 254 ~i~l~~~~e~~~~~~i~~~~~ 274 (396)
+++|+. .+...++.+.+.++
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp EEEEES-SCHHHHHHHC----
T ss_pred EEEEEe-CcHHHHHHHHHHhc
Confidence 999999 88888888766543
No 17
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=1.1e-28 Score=223.71 Aligned_cols=147 Identities=40% Similarity=0.557 Sum_probs=136.7
Q ss_pred ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
....|...|..++....++++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 14 ~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAAR 93 (212)
T ss_dssp CTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTC
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhc
Confidence 34679999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
|+|+|++++|||||+|+|+..|+||+||+||.|+.|.|++|+++.+...++.+++..+..+.....+
T Consensus 94 Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 94 GLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 9999999999999999999999999999999999999999999999999999999998777654433
No 18
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=5.2e-29 Score=216.57 Aligned_cols=142 Identities=32% Similarity=0.550 Sum_probs=135.3
Q ss_pred ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
....|...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||||+++++
T Consensus 18 ~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 97 (163)
T 2hjv_A 18 REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 97 (163)
T ss_dssp CGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT
T ss_pred ChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 35679999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCc
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVK 278 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~ 278 (396)
|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...++.+++..+.++.
T Consensus 98 Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 98 GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp TCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred CCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 99999999999999999999999999999999999999999999999999999998876654
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7.8e-31 Score=268.01 Aligned_cols=211 Identities=22% Similarity=0.305 Sum_probs=153.7
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+.. ++...+..+...++.+.|
T Consensus 257 ~~~~~lIIiDEaH~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQ-------------------------------------------GLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp CTTCCEEEECCHHHHTTC---------------------------------------------CHHHHHHHHHHSCTTCE
T ss_pred ccCCCEEEEechhhhcccC-------------------------------------------CcHHHHHHHHHhCCcCCe
Confidence 5678899999999876521 234556788888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE----------EEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL----------LCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEM 170 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~----------~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l 170 (396)
++++|||+++.+ .++.+|..+.. ............+...+..++....++++||||+++..|+.+
T Consensus 294 ~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l 373 (508)
T 3fho_A 294 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEI 373 (508)
T ss_dssp EEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHH
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHH
Confidence 999999999866 44555554433 112222223456778888888777788999999999999999
Q ss_pred HHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC------CChhHHHHHHhh
Q psy3145 171 HILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP------HSLEHYIHRVGR 244 (396)
Q Consensus 171 ~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p------~s~~~y~qr~GR 244 (396)
+..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .|+..|+||+||
T Consensus 374 ~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GR 453 (508)
T 3fho_A 374 ARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGR 453 (508)
T ss_dssp HHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSC
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred cccCCCCceEEEEEc-CccHHHHHHHHHHcCCCCcc
Q psy3145 245 TARAGKGGVSVSMAG-EVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 245 agR~g~~g~~i~l~~-~~e~~~~~~i~~~~~~~~~~ 279 (396)
+||.|+.|.+++|+. +.+...++.+.+.++..+..
T Consensus 454 agR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 454 TGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp CC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred cCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 999999999999998 45667788888887766554
No 20
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.9e-29 Score=218.25 Aligned_cols=148 Identities=28% Similarity=0.467 Sum_probs=134.2
Q ss_pred CChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 136 DTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 136 ~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
.....|...|..++.....+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||||++++
T Consensus 16 ~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 95 (175)
T 2rb4_A 16 EHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 95 (175)
T ss_dssp SSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCC
T ss_pred CChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchh
Confidence 34456999999999887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccEEEEecCC------CChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 216 RGLDIRGVKTVINYRMP------HSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 216 ~Gidi~~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
+|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+++.+...++.+.+.++..+....++
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECSS
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCCc
Confidence 99999999999999999 899999999999999999999999999999999999999988877654443
No 21
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=4.9e-30 Score=255.02 Aligned_cols=210 Identities=20% Similarity=0.200 Sum_probs=156.3
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHH-HHHHHHHCC---
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNK-DTEIVVAYC--- 101 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~-i~~il~~~~--- 101 (396)
+.+++++|+||||++.+||.. + | .++...+|.++ +..++..+|
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~--~----------------------------d---~~l~~~~~~~~~~~~i~~~~~~~~ 183 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRN--I----------------------------D---TLLMMVGIPEEIIRKAFSTIKQGK 183 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHH--H----------------------------H---HHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred cccccEEEEeChHhhhhccch--h----------------------------h---hHHhhcCCcHHHHHHHHHhcccch
Confidence 457999999999988775421 0 0 00000244555 677888777
Q ss_pred --------CCCcEEEEeec-CChhh------hccC----CCe--EEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEE
Q psy3145 102 --------WSKGTFQSNAS-MTSFL------FLLR----PPV--LLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 102 --------~~~q~ll~SAT-~~~~~------~~l~----~p~--~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF 160 (396)
.+.|++++||| .|..+ ..+. .+. .-.+....... .+...+..++.. .++++|||
T Consensus 184 ~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~l~~-~~~~~lVF 258 (414)
T 3oiy_A 184 IYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS----RSKEKLVELLEI-FRDGILIF 258 (414)
T ss_dssp CCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS----CCHHHHHHHHHH-HCSSEEEE
T ss_pred hhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc----CHHHHHHHHHHH-cCCCEEEE
Confidence 88999999999 55544 1111 000 00112222222 345556666655 45899999
Q ss_pred eCChHHHHHHHHHHHhcCCceE-EeeCCCCHHHHHHHHHHhhcCCceEEEe----ecccccccccCC-ccEEEEecCC--
Q psy3145 161 VPTKREAHEMHILLGLLGIKAG-ELHGNLTQPSRLESLRKFKDEETDVLIA----TDVAARGLDIRG-VKTVINYRMP-- 232 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-v~~VI~~~~p-- 232 (396)
|+++..|+.++..|...|+.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ |++||+||+|
T Consensus 259 ~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~ 332 (414)
T 3oiy_A 259 AQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG 332 (414)
T ss_dssp ESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT
T ss_pred ECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCC
Confidence 9999999999999999999998 99995 344 99999999999999 999999999999 9999999999
Q ss_pred CChhHHHHHHhhcccCC----CCceEEEEEcCccHHHHHHHHHHcC--CCCcccc
Q psy3145 233 HSLEHYIHRVGRTARAG----KGGVSVSMAGEVDRKLVKQVIKNAK--NPVKHRI 281 (396)
Q Consensus 233 ~s~~~y~qr~GRagR~g----~~g~~i~l~~~~e~~~~~~i~~~~~--~~~~~~~ 281 (396)
.|+..|+||+|||||.| +.|.+++|+ .+...++.+++.++ .++....
T Consensus 333 ~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 333 PDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIE 385 (414)
T ss_dssp TCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccc
Confidence 99999999999999998 579999999 66777788877766 4444433
No 22
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2e-28 Score=214.78 Aligned_cols=143 Identities=27% Similarity=0.443 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
....|...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||||+++++
T Consensus 14 ~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp CGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 34679999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCc-cHHHHHHHHHHcCCCCcc
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~-e~~~~~~i~~~~~~~~~~ 279 (396)
|+|+|++++||+||+|+|+..|+||+||+||.|+.|.+++|+++. +...++.+++..+.++..
T Consensus 94 Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (172)
T 1t5i_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 157 (172)
T ss_dssp TCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEE
T ss_pred CcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999999999999999999875 567888999888776653
No 23
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.4e-28 Score=214.27 Aligned_cols=142 Identities=27% Similarity=0.454 Sum_probs=130.0
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
...|...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||||+++++|
T Consensus 14 ~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 14 EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp GGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 34499999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCcc
Q psy3145 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKH 279 (396)
Q Consensus 218 idi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~ 279 (396)
+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...++.+++.++..+..
T Consensus 94 ~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp CCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 99999999999999999999999999999999999999999999999999999988876654
No 24
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.3e-27 Score=227.39 Aligned_cols=146 Identities=40% Similarity=0.559 Sum_probs=133.2
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccc
Q psy3145 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARG 217 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 217 (396)
...|...|..++....++++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 12 ~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 45799999999988778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 218 LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 218 idi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
+|+|++++|||||+|+++..|+||+|||||.|+.|.|++|+++.+...++.+++..+..+.....|
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999998877654433
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=263.40 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=154.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.++++|||||||++.+++|. ..+..++..++++.
T Consensus 287 ~l~~l~lVVIDEaH~l~d~~rg--------------------------------------------~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 287 VMREVAWVIFDEVHYMRDKERG--------------------------------------------VVWEETIILLPDKV 322 (1108)
T ss_dssp HHHHEEEEEEETGGGTTSHHHH--------------------------------------------HHHHHHHHHSCTTS
T ss_pred ccccCCEEEEhhhhhccccchH--------------------------------------------HHHHHHHHhcCCCc
Confidence 4778999999999988886543 34478888999999
Q ss_pred cEEEEeecCChhh-------hccCCCeEEEE--------EEEEEec-----------CCh--------------------
Q psy3145 105 GTFQSNASMTSFL-------FLLRPPVLLCL--------LCFRIRK-----------DTH-------------------- 138 (396)
Q Consensus 105 q~ll~SAT~~~~~-------~~l~~p~~i~~--------~~~~~~~-----------~~~-------------------- 138 (396)
|+++||||+|+.. ....+|..+.. .++.+.. ...
T Consensus 323 qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~ 402 (1108)
T 3l9o_A 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 402 (1108)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-------
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccc
Confidence 9999999998764 22334444433 1111110 000
Q ss_pred -----------------------hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc---------------
Q psy3145 139 -----------------------LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK--------------- 180 (396)
Q Consensus 139 -----------------------~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~--------------- 180 (396)
..+...+...+......++||||+|+..|+.++..|...++.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1108)
T 3l9o_A 403 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 482 (1108)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGS
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 112222333344455679999999999999999998654332
Q ss_pred ------------------------eEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC----
Q psy3145 181 ------------------------AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP---- 232 (396)
Q Consensus 181 ------------------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p---- 232 (396)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.|
T Consensus 483 ~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~ 562 (1108)
T 3l9o_A 483 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 562 (1108)
T ss_dssp CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSS
T ss_pred HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCcc
Confidence 7899999999999999999999999999999999999999999999987764
Q ss_pred ----CChhHHHHHHhhcccCC--CCceEEEEEcCc-cHHHHHHHHHHcC
Q psy3145 233 ----HSLEHYIHRVGRTARAG--KGGVSVSMAGEV-DRKLVKQVIKNAK 274 (396)
Q Consensus 233 ----~s~~~y~qr~GRagR~g--~~g~~i~l~~~~-e~~~~~~i~~~~~ 274 (396)
.|+..|+||+|||||.| ..|.|++++++. +...++.+.....
T Consensus 563 ~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~ 611 (1108)
T 3l9o_A 563 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQA 611 (1108)
T ss_dssp CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCC
T ss_pred ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCC
Confidence 46778999999999999 679999998865 5555666655443
No 26
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=216.39 Aligned_cols=136 Identities=31% Similarity=0.570 Sum_probs=122.5
Q ss_pred ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
....|...|..++... ++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 38 ~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~ 116 (191)
T 2p6n_A 38 KEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116 (191)
T ss_dssp CGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHT
T ss_pred ChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhc
Confidence 3467999999988664 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCc-cHHHHHHHHHHc
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV-DRKLVKQVIKNA 273 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~-e~~~~~~i~~~~ 273 (396)
|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+.+
T Consensus 117 Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l 174 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALL 174 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 667777776654
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-27 Score=256.87 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=158.1
Q ss_pred hhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 23 DKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 23 ~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
...+.+++++||||||++.++++.. .+..++..+|.
T Consensus 187 ~~~l~~l~lVViDEaH~l~d~~rg~--------------------------------------------~~e~il~~l~~ 222 (1010)
T 2xgj_A 187 SEVMREVAWVIFDEVHYMRDKERGV--------------------------------------------VWEETIILLPD 222 (1010)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHH--------------------------------------------HHHHHHHHSCT
T ss_pred cchhhcCCEEEEechhhhcccchhH--------------------------------------------HHHHHHHhcCC
Confidence 3457889999999999998876432 23677888999
Q ss_pred CCcEEEEeecCChhh---h----ccCCCeEEEE---------EEEEE----------ecCCh------------------
Q psy3145 103 SKGTFQSNASMTSFL---F----LLRPPVLLCL---------LCFRI----------RKDTH------------------ 138 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~---~----~l~~p~~i~~---------~~~~~----------~~~~~------------------ 138 (396)
+.|++++|||+|+.. . ....|..+.. .++.. .....
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 999999999999765 1 2234444332 12111 00000
Q ss_pred -------------------------hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc-------------
Q psy3145 139 -------------------------LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK------------- 180 (396)
Q Consensus 139 -------------------------~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~------------- 180 (396)
......+...+......++||||+|++.|+.++..|...++.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 111222333344445569999999999999999999775442
Q ss_pred --------------------------eEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE----ec
Q psy3145 181 --------------------------AGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN----YR 230 (396)
Q Consensus 181 --------------------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~----~~ 230 (396)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 788999999999999999999999999999999999999999999999 99
Q ss_pred C----CCChhHHHHHHhhcccCCC--CceEEEEEcCc-cHHHHHHHHH
Q psy3145 231 M----PHSLEHYIHRVGRTARAGK--GGVSVSMAGEV-DRKLVKQVIK 271 (396)
Q Consensus 231 ~----p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~-e~~~~~~i~~ 271 (396)
. |.|+..|+||+|||||.|. .|.|++++++. +...++.+..
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 9 8999999999999999997 49999999865 5666666644
No 28
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=211.75 Aligned_cols=137 Identities=36% Similarity=0.592 Sum_probs=115.3
Q ss_pred hhhHHHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 138 HLDRKALLAALVCRT-FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~-~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
...|...|..++... .+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 457899999998776 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcC
Q psy3145 217 GLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 217 Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
|+|+|++++||+||+|+|+..|+||+||+||.|+.|.+++|+++.+...++.+.+.+.
T Consensus 109 Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 109 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp --CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888877664
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=2.1e-25 Score=243.16 Aligned_cols=132 Identities=21% Similarity=0.210 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCC---------------------------------------ceE
Q psy3145 142 KALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI---------------------------------------KAG 182 (396)
Q Consensus 142 ~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~ 182 (396)
...+...+......++||||+|++.|+.++..|...++ .+.
T Consensus 324 ~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 403 (997)
T 4a4z_A 324 WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIA 403 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCee
Confidence 44555666666678999999999999999999977665 579
Q ss_pred EeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC---------ChhHHHHHHhhcccCC--CC
Q psy3145 183 ELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH---------SLEHYIHRVGRTARAG--KG 251 (396)
Q Consensus 183 ~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~---------s~~~y~qr~GRagR~g--~~ 251 (396)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. |+.+|+||+|||||.| ..
T Consensus 404 ~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 404 VHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSS
T ss_pred eecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcc
Confidence 9999999999999999999999999999999999999999 5555555444 9999999999999998 45
Q ss_pred ceEEEEEc--CccHHHHHHHHHHcC
Q psy3145 252 GVSVSMAG--EVDRKLVKQVIKNAK 274 (396)
Q Consensus 252 g~~i~l~~--~~e~~~~~~i~~~~~ 274 (396)
|.|++++. ..+...++.+.....
T Consensus 483 G~vi~l~~~~~~~~~~~~~~i~~~~ 507 (997)
T 4a4z_A 483 GTVIVMAYNSPLSIATFKEVTMGVP 507 (997)
T ss_dssp EEEEEECCSSCCCHHHHHHHHHSCC
T ss_pred eEEEEecCCCcchHHHHHHHhcCCC
Confidence 88888873 446666666655443
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=1.5e-27 Score=239.29 Aligned_cols=163 Identities=19% Similarity=0.138 Sum_probs=119.0
Q ss_pred CCCCcEEEEeecCChhhhcc-CCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCC
Q psy3145 101 CWSKGTFQSNASMTSFLFLL-RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI 179 (396)
Q Consensus 101 ~~~~q~ll~SAT~~~~~~~l-~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~ 179 (396)
+.++|+++||||+++.+..+ ..+..+......+... .+...+..+.. .++++||||+|++.++.+++.|+..|+
T Consensus 128 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~ 202 (440)
T 1yks_A 128 ANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSE---PWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGK 202 (440)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSS---CCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEeCCCCchhhhhhhcCCCeeEeeeccChH---HHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46899999999999888322 2222221111111111 11122223322 267999999999999999999999999
Q ss_pred ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE-------------------ecCCCChhHHHH
Q psy3145 180 KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN-------------------YRMPHSLEHYIH 240 (396)
Q Consensus 180 ~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~-------------------~~~p~s~~~y~q 240 (396)
++..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.|.+..+|+|
T Consensus 203 ~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Q 277 (440)
T 1yks_A 203 SVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQ 277 (440)
T ss_dssp CEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHH
T ss_pred CEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHH
Confidence 9999999 4688999999999999999999999999999 999996 899999999999
Q ss_pred HHhhcccC-CCCceEEEEE---cCccHHHHHHHHHHc
Q psy3145 241 RVGRTARA-GKGGVSVSMA---GEVDRKLVKQVIKNA 273 (396)
Q Consensus 241 r~GRagR~-g~~g~~i~l~---~~~e~~~~~~i~~~~ 273 (396)
|+||+||. |++|.|++|+ ++.+...++.++...
T Consensus 278 r~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 278 RRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred hccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999997 6899999996 567766676666543
No 31
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=4.3e-27 Score=246.93 Aligned_cols=233 Identities=20% Similarity=0.244 Sum_probs=135.0
Q ss_pred CCCcEEEEeecCChhhhc--------------cCCCeEEEEEEEEEecCChhhHHHHHHHHHhhc-CCCcEEEEeCChHH
Q psy3145 102 WSKGTFQSNASMTSFLFL--------------LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRT-FKDHTMIFVPTKRE 166 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~~~--------------l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~t~~~ 166 (396)
...|+++||||+++.... +.+|. +.+... ......++..+.... .+.++||||+|+..
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~r~~~l~~p~------i~v~~~-~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHSGRVVEQIIRPTGLLDPL------VRVKPT-ENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHCSEEEEECSCTTCCCCCE------EEEECS-TTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred hcCCEEEEecCCCHHHHHhhhCeeeeeeccCCCCCCe------EEEecc-cchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 467999999999865311 22232 222222 223333444443322 46799999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC-----CCChhHHHHH
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM-----PHSLEHYIHR 241 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~-----p~s~~~y~qr 241 (396)
++.++..|...|+++..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.|..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HhhcccCCCCceEEEEEcCccHHHHHHHHHHcC-------CCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy3145 242 VGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK-------NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314 (396)
Q Consensus 242 ~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
+|||||.| .|.+++|+++.+....+.+.+... ........|..+... +.+++.. .....
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~---------i~~~~~~--~~~~~-- 597 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKE---------VRAVIRP--EGYEE-- 597 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----------------------------
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHH---------HHHHhhh--hhcch--
Confidence 99999996 899999999877665555543321 001122223322111 1122110 00000
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHhhccccCCCccCCc
Q psy3145 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKPLHENPP 355 (396)
Q Consensus 315 ~~~~~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~~i~~~~~ 355 (396)
......+..+++++.+...+.+|.+|.+.++++.+...|+.
T Consensus 598 ~~~~~~~~~~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~ 638 (664)
T 1c4o_A 598 APLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDE 638 (664)
T ss_dssp -----------------------------------------
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 01112345667888899999999999998888876655443
No 32
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.90 E-value=5.3e-29 Score=218.02 Aligned_cols=145 Identities=37% Similarity=0.610 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccccc
Q psy3145 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGL 218 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 218 (396)
..|...|..++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 56888898888777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 219 DIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 219 di~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
|+|++++||+||+|+|+..|+||+||+||.|+.|.+++++++.+...++.+.+.++..+....++
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 99999999999999999999999999999999999999999999999999988887776655443
No 33
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=1.8e-27 Score=247.55 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=134.9
Q ss_pred HHHHHHHHHHCC-CCCcEEEEeecCChhhh-cc-CCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 90 YNKDTEIVVAYC-WSKGTFQSNASMTSFLF-LL-RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 90 ~~~i~~il~~~~-~~~q~ll~SAT~~~~~~-~l-~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
...+..|+..++ +++|+++||||+|+.+. +. .+|..+.+... +. ......++..+. . .++++||||+|++.
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~-~~---~~~~~~ll~~l~-~-~~~~~LVF~~s~~~ 367 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIERE-IP---ERSWNTGFDWIT-D-YQGKTVWFVPSIKA 367 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECC-CC---SSCCSSSCHHHH-H-CCSCEEEECSSHHH
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeeccc-CC---HHHHHHHHHHHH-h-CCCCEEEEECChhH
Confidence 345566666665 68999999999998883 22 24444433211 11 111112222232 2 36799999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEE--------------------
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTV-------------------- 226 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~V-------------------- 226 (396)
|+.+++.|...|+++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 368 a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 368 GNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999999984 688899999999999999999999999997 9888
Q ss_pred EEecCCCChhHHHHHHhhcccCCC-CceEEEEEc---CccHHHHHHHHHHc
Q psy3145 227 INYRMPHSLEHYIHRVGRTARAGK-GGVSVSMAG---EVDRKLVKQVIKNA 273 (396)
Q Consensus 227 I~~~~p~s~~~y~qr~GRagR~g~-~g~~i~l~~---~~e~~~~~~i~~~~ 273 (396)
|||+.|.|..+|+||+|||||.|. .|.+++|++ +.|...++.++...
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 888889999999999999999965 899999997 77777777777654
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=8.2e-26 Score=236.86 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 138 HLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 138 ~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
...|...+...+.. ..+.++||||+|+..++.++..|...|+++..+||++.+.+|..+.++|+.| .|+||||+++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 45677777776653 2467899999999999999999999999999999999888887777777766 6899999999
Q ss_pred cccccC--------CccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 216 RGLDIR--------GVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 216 ~Gidi~--------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
||+||+ ++.+||||+.|.|...|+||+|||||.|++|.+++|++..|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 888999999999999999999999999999999999997663
No 35
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=2.1e-26 Score=241.57 Aligned_cols=236 Identities=17% Similarity=0.260 Sum_probs=156.5
Q ss_pred CCCcEEEEeecCChhhhc--------------cCCCeEEEEEEEEEecCChhhHHHHHHHHHhhc-CCCcEEEEeCChHH
Q psy3145 102 WSKGTFQSNASMTSFLFL--------------LRPPVLLCLLCFRIRKDTHLDRKALLAALVCRT-FKDHTMIFVPTKRE 166 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~~~--------------l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~t~~~ 166 (396)
..+|+++||||+++.... +.+|. +.+... ......++..+.... .+.++||||+|+..
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~r~~~l~~p~------i~v~~~-~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPL------IDVRPI-EGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHCSSCEEECCCTTCCCCCE------EEEECS-TTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred cCCCEEEEecCCChhHHHhhhCeeeeeecccCCCCCe------EEEecc-cchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999999865411 12232 222222 223344444444333 46799999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC-----CCChhHHHHH
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM-----PHSLEHYIHR 241 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~-----p~s~~~y~qr 241 (396)
++.++..|...|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.|..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HhhcccCCCCceEEEEEcCccHHHHHHHHHHcC-------CCCccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy3145 242 VGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAK-------NPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIE 314 (396)
Q Consensus 242 ~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
+|||||. ..|.+++|+++.+....+.+.+... ........|..+.......+. .......... .....
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~~~~---~~~~~~~~~~-~~~~~ 612 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIR---ATVAAEDKAE-YKTKA 612 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC--------------------------
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHh---hccccccccc-cchhh
Confidence 9999998 5899999999877655554433221 001122223322211111110 0000000000 00000
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHhhccccCC
Q psy3145 315 GEVQKILTEEKHDRLLNKADEQVSKAEKMLKEKKP 349 (396)
Q Consensus 315 ~~~~~~~~~~~~e~~~~~~~~~~~~a~~~l~~~~~ 349 (396)
......+..+++.+.+...+.+|..|.+.++++.+
T Consensus 613 ~~~~~~~~~~~~~~~i~~l~~~m~~aa~~~~fe~A 647 (661)
T 2d7d_A 613 APKLSKMTKKERQKVVEQMEHEMKEAAKALDFERA 647 (661)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhhCCHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 00011245567888888999999998887777643
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=3e-26 Score=229.74 Aligned_cols=122 Identities=28% Similarity=0.345 Sum_probs=110.5
Q ss_pred HHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeC--------CCCHHHHHHHHHHhhcCCceEE
Q psy3145 141 RKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHG--------NLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 141 k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg--------~~~~~~r~~~~~~f~~g~~~vL 208 (396)
|...+..++.. ..+.++||||+++..++.++..|...|+.+..+|| +|++.+|.++++.|++|+.+||
T Consensus 344 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vL 423 (494)
T 1wp9_A 344 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 423 (494)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEE
Confidence 55566666655 46789999999999999999999999999999999 9999999999999999999999
Q ss_pred EeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 209 IATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 209 vaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
|||+++++|+|+|++++||+||.|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 424 v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred EECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 999999999999999999999999999999999999999997 999999988654
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=5.9e-26 Score=233.08 Aligned_cols=123 Identities=23% Similarity=0.327 Sum_probs=65.9
Q ss_pred HHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhc------------CCceEEeeCCCCHHHHHHHHHHhhc-C
Q psy3145 141 RKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLL------------GIKAGELHGNLTQPSRLESLRKFKD-E 203 (396)
Q Consensus 141 k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g 203 (396)
|...|..++.. ..+.++||||+++..++.++..|... |.....+||+|++.+|..++++|++ |
T Consensus 373 K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 452 (556)
T 4a2p_A 373 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 452 (556)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----------------------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC
Confidence 44455555533 45689999999999999999999875 5556667888999999999999999 9
Q ss_pred CceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL 265 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~ 265 (396)
+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+...
T Consensus 453 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 453 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp -CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred ceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 99999999999999999999999999999999999999999 999 6899999998866543
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=1.2e-26 Score=255.16 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=150.0
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHH-HHHHHHHCC---
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNK-DTEIVVAYC--- 101 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~-i~~il~~~~--- 101 (396)
+.+++++||||||++..++.. + +.++...||.++ +..+++.+|
T Consensus 194 ~~~l~~lViDEaH~l~~~~r~--~-------------------------------Dr~L~~~gf~~~~i~~il~~l~~~~ 240 (1104)
T 4ddu_A 194 QKRFDFVFVDDVDAVLKASRN--I-------------------------------DTLLMMVGIPEEIIRKAFSTIKQGK 240 (1104)
T ss_dssp TSCCSEEEESCHHHHTTSSHH--H-------------------------------HHHHHTSSCCHHHHHHHHHHHHHTS
T ss_pred ccCcCEEEEeCCCcccccccc--c-------------------------------hhhhHhcCCCHHHHHHHHHhcccch
Confidence 567999999999987763210 0 001110244555 678888887
Q ss_pred --------CCCcEEEEeec-CChhh--hccCCCeEEE----------EEEEEEecCChhhHHHHHHHHHhhcCCCcEEEE
Q psy3145 102 --------WSKGTFQSNAS-MTSFL--FLLRPPVLLC----------LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 102 --------~~~q~ll~SAT-~~~~~--~~l~~p~~i~----------~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF 160 (396)
.++|+++|||| .|..+ ..+.++..+. +....+.. .+...|..++.. .++++|||
T Consensus 241 ~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~----~k~~~L~~ll~~-~~~~~LVF 315 (1104)
T 4ddu_A 241 IYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS----RSKEKLVELLEI-FRDGILIF 315 (1104)
T ss_dssp CCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESC----CCHHHHHHHHHH-HCSSEEEE
T ss_pred hhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEec----CHHHHHHHHHHh-cCCCEEEE
Confidence 89999999999 55544 1111111111 12222222 345556666655 34899999
Q ss_pred eCChHHHHHHHHHHHhcCCceE-EeeCCCCHHHHHHHHHHhhcCCceEEEe----ecccccccccCC-ccEEEEecCCC-
Q psy3145 161 VPTKREAHEMHILLGLLGIKAG-ELHGNLTQPSRLESLRKFKDEETDVLIA----TDVAARGLDIRG-VKTVINYRMPH- 233 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~-v~~VI~~~~p~- 233 (396)
|+|+..++.++..|...|+.+. .+||. |.+ ++.|++|+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 316 ~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~ 389 (1104)
T 4ddu_A 316 AQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSM 389 (1104)
T ss_dssp ESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEE
T ss_pred ECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCC
Confidence 9999999999999999999998 99992 555 99999999999999 999999999999 99999999998
Q ss_pred -----------------------------------------------------------------------ChhHHHHHH
Q psy3145 234 -----------------------------------------------------------------------SLEHYIHRV 242 (396)
Q Consensus 234 -----------------------------------------------------------------------s~~~y~qr~ 242 (396)
++.+|+||+
T Consensus 390 ~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~ 469 (1104)
T 4ddu_A 390 RFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQAS 469 (1104)
T ss_dssp EEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhccc
Confidence 788999999
Q ss_pred hhcccCCCCc--eEEEEEcCccHHHHHHHHHHcC
Q psy3145 243 GRTARAGKGG--VSVSMAGEVDRKLVKQVIKNAK 274 (396)
Q Consensus 243 GRagR~g~~g--~~i~l~~~~e~~~~~~i~~~~~ 274 (396)
|||||.|..| .+++++..+|...++.+.+..+
T Consensus 470 GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 470 GRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 9999976433 3444444477788888877664
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=2.3e-25 Score=228.27 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=87.1
Q ss_pred HHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhcC------------CceEEeeCCCCHHHHHHHHHHhhc-C
Q psy3145 141 RKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLLG------------IKAGELHGNLTQPSRLESLRKFKD-E 203 (396)
Q Consensus 141 k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~r~~~~~~f~~-g 203 (396)
|...|..++.. ..+.++||||+++..++.++..|...+ .....+||+|++.+|..++++|++ |
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 44555555543 346899999999999999999998764 344555669999999999999999 9
Q ss_pred CceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~ 267 (396)
+++|||||+++++|+|+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+.....
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999999999999999999999999999999999999 999 799999999987665443
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.6e-25 Score=237.74 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=143.3
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++||||||.+.++++.+ .+..++..++ +.|
T Consensus 143 l~~~~~vIiDE~H~l~~~~~~~--------------------------------------------~l~~i~~~~~-~~~ 177 (715)
T 2va8_A 143 LNEVNYFVLDELHYLNDPERGP--------------------------------------------VVESVTIRAK-RRN 177 (715)
T ss_dssp GGGEEEEEECSGGGGGCTTTHH--------------------------------------------HHHHHHHHHH-TSE
T ss_pred hhccCEEEEechhhcCCcccch--------------------------------------------HHHHHHHhcc-cCc
Confidence 7789999999999877655433 3355565555 899
Q ss_pred EEEEeecCChhh---hccCC--------CeEEEEEEEE---------EecCC--------hhhHHHHHHHHHhhcCCCcE
Q psy3145 106 TFQSNASMTSFL---FLLRP--------PVLLCLLCFR---------IRKDT--------HLDRKALLAALVCRTFKDHT 157 (396)
Q Consensus 106 ~ll~SAT~~~~~---~~l~~--------p~~i~~~~~~---------~~~~~--------~~~k~~~l~~ll~~~~~~~~ 157 (396)
++++|||+++.. .++.. |+.+...+.. +.... ...+...+...+. .++++
T Consensus 178 ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 255 (715)
T 2va8_A 178 LLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQV 255 (715)
T ss_dssp EEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCE
T ss_pred EEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCE
Confidence 999999998533 33322 3333221111 10000 1234555555543 46899
Q ss_pred EEEeCChHHHHHHHHHHHhcC------------------------------------CceEEeeCCCCHHHHHHHHHHhh
Q psy3145 158 MIFVPTKREAHEMHILLGLLG------------------------------------IKAGELHGNLTQPSRLESLRKFK 201 (396)
Q Consensus 158 iIF~~t~~~~~~l~~~L~~~~------------------------------------~~~~~lhg~~~~~~r~~~~~~f~ 201 (396)
||||++++.++.++..|.... ..+.++||+|++.+|..+++.|+
T Consensus 256 LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~ 335 (715)
T 2va8_A 256 LVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFR 335 (715)
T ss_dssp EEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999997642 34899999999999999999999
Q ss_pred cCCceEEEeecccccccccCCccEEEE----ec-------CCCChhHHHHHHhhcccCCC--CceEEEEEcCccH
Q psy3145 202 DEETDVLIATDVAARGLDIRGVKTVIN----YR-------MPHSLEHYIHRVGRTARAGK--GGVSVSMAGEVDR 263 (396)
Q Consensus 202 ~g~~~vLvaT~~~~~Gidi~~v~~VI~----~~-------~p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~e~ 263 (396)
+|.++|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.|. .|.|+.++++.+.
T Consensus 336 ~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 336 QRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp TTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred cCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999999999999999999999 99 89999999999999999984 7999999987653
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.93 E-value=2.5e-26 Score=240.67 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=125.8
Q ss_pred CCCcEEEEeecCChhhhcc---CCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcC
Q psy3145 102 WSKGTFQSNASMTSFLFLL---RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLG 178 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~~~l---~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~ 178 (396)
.++|+++||||+++.+..+ +.|+. .+. ..+ ....+...+..+.. .++++||||++++.++.++..|...+
T Consensus 362 ~~~~vl~~SAT~~~~i~~~~~~~~~i~-~v~-~~~---~~~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g 434 (673)
T 2wv9_A 362 GEAAAIFMTATPPGTSDPFPDTNSPVH-DVS-SEI---PDRAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAG 434 (673)
T ss_dssp TSCEEEEECSSCTTCCCSSCCCSSCEE-EEE-CCC---CSSCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEcCCCChhhhhhcccCCceE-EEe-eec---CHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCC
Confidence 6899999999999988322 22321 111 001 11111222333332 46799999999999999999999999
Q ss_pred CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE--------------------ecCCCChhHH
Q psy3145 179 IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN--------------------YRMPHSLEHY 238 (396)
Q Consensus 179 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~--------------------~~~p~s~~~y 238 (396)
+++..+||. +|..+++.|++|+.+|||||+++++|||+| +++||| |++|.+..+|
T Consensus 435 ~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y 509 (673)
T 2wv9_A 435 KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASA 509 (673)
T ss_dssp CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHH
T ss_pred CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHH
Confidence 999999994 789999999999999999999999999999 999998 6789999999
Q ss_pred HHHHhhcccC-CCCceEEEEE---cCccHHHHHHHHHHc
Q psy3145 239 IHRVGRTARA-GKGGVSVSMA---GEVDRKLVKQVIKNA 273 (396)
Q Consensus 239 ~qr~GRagR~-g~~g~~i~l~---~~~e~~~~~~i~~~~ 273 (396)
+||+||+||. |+.|.|++|+ ++.+...++.++...
T Consensus 510 ~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 510 AQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp HHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9999999999 7899999996 566766666665543
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.93 E-value=7.5e-26 Score=227.77 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=118.9
Q ss_pred CCCCCcEEEEeecCChhh--hccCCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc
Q psy3145 100 YCWSKGTFQSNASMTSFL--FLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL 177 (396)
Q Consensus 100 ~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~ 177 (396)
.++++|+++||||+|+.+ ....++..+.+. ..... .....+...+.. ..+++||||+|++.|+.++..|...
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~----~~~p~-~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~ 211 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE----REIPE-RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKS 211 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE----CCCCS-SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred cCCCceEEEEccCCCccchhhhcCCCceEecC----ccCCc-hhhHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHc
Confidence 456899999999999887 333445444331 11110 001111222222 3569999999999999999999999
Q ss_pred CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEec--------------------CCCChhH
Q psy3145 178 GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYR--------------------MPHSLEH 237 (396)
Q Consensus 178 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~--------------------~p~s~~~ 237 (396)
|+.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||||| .|.|..+
T Consensus 212 g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 212 GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHH
Confidence 999999999754 57899999999999999999999999999 9999999 9999999
Q ss_pred HHHHHhhcccCCC-CceEEEEEcC
Q psy3145 238 YIHRVGRTARAGK-GGVSVSMAGE 260 (396)
Q Consensus 238 y~qr~GRagR~g~-~g~~i~l~~~ 260 (396)
|+||+|||||.|. .|.+++|...
T Consensus 287 y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999998 7899888753
No 43
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=9.6e-26 Score=238.91 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=148.5
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+++++++|+||||++.++++.+.+ +.+-..++..+++.|
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~-----------------------------------------~~ll~~l~~~~~~~~ 174 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATL-----------------------------------------EILVTKMRRMNKALR 174 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHH-----------------------------------------HHHHHHHHHHCTTCE
T ss_pred HhhcCEEEEeeeeecCCCCcccHH-----------------------------------------HHHHHHHHhcCcCce
Confidence 778999999999999887765444 122223334467899
Q ss_pred EEEEeecCChhh---hccCC--------CeEEEEEE------EEEecC----ChhhHHHHHHHHHhhcCCCcEEEEeCCh
Q psy3145 106 TFQSNASMTSFL---FLLRP--------PVLLCLLC------FRIRKD----THLDRKALLAALVCRTFKDHTMIFVPTK 164 (396)
Q Consensus 106 ~ll~SAT~~~~~---~~l~~--------p~~i~~~~------~~~~~~----~~~~k~~~l~~ll~~~~~~~~iIF~~t~ 164 (396)
++++|||+++.. .++.. |..+...+ ...... ....+...+...+. .++++||||+|+
T Consensus 175 ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~ 252 (702)
T 2p6r_A 175 VIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTR 252 (702)
T ss_dssp EEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSH
T ss_pred EEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCH
Confidence 999999999533 33332 22222211 111100 00115555665553 468999999999
Q ss_pred HHHHHHHHHHHhc------------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc
Q psy3145 165 REAHEMHILLGLL------------------------------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214 (396)
Q Consensus 165 ~~~~~l~~~L~~~------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 214 (396)
+.++.++..|... +..+.++||+|++.+|..+++.|++|.++|||||+++
T Consensus 253 ~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 332 (702)
T 2p6r_A 253 RGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTL 332 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTT
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHH
Confidence 9999999988753 2468899999999999999999999999999999999
Q ss_pred ccccccCCccEEEE----ec---CCCChhHHHHHHhhcccCC--CCceEEEEEcCcc
Q psy3145 215 ARGLDIRGVKTVIN----YR---MPHSLEHYIHRVGRTARAG--KGGVSVSMAGEVD 262 (396)
Q Consensus 215 ~~Gidi~~v~~VI~----~~---~p~s~~~y~qr~GRagR~g--~~g~~i~l~~~~e 262 (396)
++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|.|++++++.+
T Consensus 333 ~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 333 AAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred hccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999 76 7899999999999999998 4799999998876
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.93 E-value=2.1e-25 Score=237.01 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=149.0
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+++++++||||||++.++++.+. +..++..++.+.|
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~--------------------------------------------~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 136 IKDVKILVADEIHLIGSRDRGAT--------------------------------------------LEVILAHMLGKAQ 171 (720)
T ss_dssp GGGEEEEEEETGGGGGCTTTHHH--------------------------------------------HHHHHHHHBTTBE
T ss_pred hhcCCEEEEECCcccCCCcccHH--------------------------------------------HHHHHHHhhcCCe
Confidence 67899999999998887654433 3566666666899
Q ss_pred EEEEeecCChhh---hccC--------CCeEEEEEEE-----EEecCC---hhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 106 TFQSNASMTSFL---FLLR--------PPVLLCLLCF-----RIRKDT---HLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 106 ~ll~SAT~~~~~---~~l~--------~p~~i~~~~~-----~~~~~~---~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
++++|||+++.. .++. .|+.+...+. ...... ...+...+...+. .++++||||+|++.
T Consensus 172 ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~ 249 (720)
T 2zj8_A 172 IIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRK 249 (720)
T ss_dssp EEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHH
T ss_pred EEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHH
Confidence 999999998643 3332 2444432111 111100 1234455555553 35899999999999
Q ss_pred HHHHHHHHHhc---------------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 167 AHEMHILLGLL---------------------------------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 167 ~~~l~~~L~~~---------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
++.++..|... ...+.++||+|++.+|..+++.|++|.++|||||++
T Consensus 250 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~ 329 (720)
T 2zj8_A 250 AERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPT 329 (720)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECST
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcH
Confidence 99999998753 124899999999999999999999999999999999
Q ss_pred cccccccCCccEEEE----ec----CCCChhHHHHHHhhcccCC--CCceEEEEEcCcc
Q psy3145 214 AARGLDIRGVKTVIN----YR----MPHSLEHYIHRVGRTARAG--KGGVSVSMAGEVD 262 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~----~~----~p~s~~~y~qr~GRagR~g--~~g~~i~l~~~~e 262 (396)
+++|+|+|++++||+ || .|.|..+|+||+|||||.| ..|.|++++++.+
T Consensus 330 l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 330 LSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp TGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred hhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999 77 5899999999999999998 4699999998877
No 45
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.93 E-value=9.8e-27 Score=234.70 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=116.8
Q ss_pred CCCCcEEEEeecCChhhhcc---CCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc
Q psy3145 101 CWSKGTFQSNASMTSFLFLL---RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL 177 (396)
Q Consensus 101 ~~~~q~ll~SAT~~~~~~~l---~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~ 177 (396)
+++.|+++||||+|..+..+ ..|+.... ..+.......... ++.. .++++||||+|++.++.++..|+..
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~~~pi~~~~--~~~~~~~~~~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDSNAPIHDLQ--DEIPDRAWSSGYE----WITE-YAGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCCSSCEEEEE--CCCCSSCCSSCCH----HHHH-CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred cCCccEEEEEcCCCcchhhhccCCCCeEEec--ccCCcchhHHHHH----HHHh-cCCCEEEEeCChHHHHHHHHHHHhc
Confidence 46899999999999988322 34543211 0111111111122 2222 2679999999999999999999999
Q ss_pred CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEE--------------------ecCCCChhH
Q psy3145 178 GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVIN--------------------YRMPHSLEH 237 (396)
Q Consensus 178 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~--------------------~~~p~s~~~ 237 (396)
|+.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999995 6788999999999999999999999999999 99999 779999999
Q ss_pred HHHHHhhcccCCC-CceEEEEEcCc
Q psy3145 238 YIHRVGRTARAGK-GGVSVSMAGEV 261 (396)
Q Consensus 238 y~qr~GRagR~g~-~g~~i~l~~~~ 261 (396)
|+||+|||||.|. +|.+++|+++.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 89999999864
No 46
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=232.50 Aligned_cols=106 Identities=29% Similarity=0.400 Sum_probs=90.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc------CCceEEeeCC--------CCHHHHHHHHHHhhcCCceEEEeecccccccc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL------GIKAGELHGN--------LTQPSRLESLRKFKDEETDVLIATDVAARGLD 219 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 219 (396)
++++||||+++..++.++..|... |+++..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCc
Q psy3145 220 IRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEV 261 (396)
Q Consensus 220 i~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~ 261 (396)
+|+|++||+||+|+|+..|+||+|||||.| +.++++....
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999976655 4444444433
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=3.3e-25 Score=231.79 Aligned_cols=125 Identities=19% Similarity=0.113 Sum_probs=112.8
Q ss_pred ChhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc
Q psy3145 137 THLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 214 (396)
....|...+...+.. ..+.++||||+|+..++.++..|...|+++..+||++.+.++..+.++|+.| .|+|||+++
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA 499 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMA 499 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccc
Confidence 345688888877743 3467999999999999999999999999999999999988888888999988 699999999
Q ss_pred ccccccCCc-------------------------------------cEEEEecCCCChhHHHHHHhhcccCCCCceEEEE
Q psy3145 215 ARGLDIRGV-------------------------------------KTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257 (396)
Q Consensus 215 ~~Gidi~~v-------------------------------------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l 257 (396)
+||+||+.. .+||||+.|.|...|.||+|||||.|++|.+++|
T Consensus 500 gRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~f 579 (853)
T 2fsf_A 500 GRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFY 579 (853)
T ss_dssp SSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred cCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEE
Confidence 999999973 5999999999999999999999999999999999
Q ss_pred EcCccH
Q psy3145 258 AGEVDR 263 (396)
Q Consensus 258 ~~~~e~ 263 (396)
++..|.
T Consensus 580 ls~eD~ 585 (853)
T 2fsf_A 580 LSMEDA 585 (853)
T ss_dssp EETTSG
T ss_pred ecccHH
Confidence 997764
No 48
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.92 E-value=2.1e-24 Score=228.19 Aligned_cols=126 Identities=25% Similarity=0.321 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhc----CCCcEEEEeCChHHHHHHHHHHHhcC----CceEEe--------eCCCCHHHHHHHHHHhhc-
Q psy3145 140 DRKALLAALVCRT----FKDHTMIFVPTKREAHEMHILLGLLG----IKAGEL--------HGNLTQPSRLESLRKFKD- 202 (396)
Q Consensus 140 ~k~~~l~~ll~~~----~~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~r~~~~~~f~~- 202 (396)
.|...|..++... .++++||||+++..++.++..|...| +++..+ ||+|++.+|.+++++|++
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 4666777777554 56799999999999999999999988 888888 559999999999999998
Q ss_pred CCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHH
Q psy3145 203 EETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVK 267 (396)
Q Consensus 203 g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~ 267 (396)
|+.+|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||. +.|.++++++..+.....
T Consensus 460 g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 460 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp -CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred CCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 999999999999999999999999999999999999999999 998 689999999887665444
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.92 E-value=1.8e-25 Score=245.45 Aligned_cols=164 Identities=23% Similarity=0.240 Sum_probs=126.7
Q ss_pred CCCCcEEEEeecCChhh----hccCCCeEEE----------EEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHH
Q psy3145 101 CWSKGTFQSNASMTSFL----FLLRPPVLLC----------LLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKRE 166 (396)
Q Consensus 101 ~~~~q~ll~SAT~~~~~----~~l~~p~~i~----------~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~ 166 (396)
+..+|++++|||+++.. ..+.+|..+. +....+. ..+...|..++... ++++||||+|++.
T Consensus 213 ~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~-~~~~LVF~~t~~~ 287 (1054)
T 1gku_B 213 VGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEKL-GTGGIIYARTGEE 287 (1054)
T ss_dssp EECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTTS-CSCEEEEESSHHH
T ss_pred ccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhhc-CCCEEEEEcCHHH
Confidence 56889999999998853 1111111111 1222221 34556667777554 5789999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEe----ecccccccccCCc-cEEEEecCC---------
Q psy3145 167 AHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIA----TDVAARGLDIRGV-KTVINYRMP--------- 232 (396)
Q Consensus 167 ~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gidi~~v-~~VI~~~~p--------- 232 (396)
|+.++..|+.. +++..+||++. .+++.|++|+.+|||| |+++++|||+|+| ++|||||+|
T Consensus 288 a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~ 361 (1054)
T 1gku_B 288 AEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDI 361 (1054)
T ss_dssp HHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCG
T ss_pred HHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccccccccc
Confidence 99999999888 99999999983 7889999999999999 8999999999996 999999999
Q ss_pred --------------------------------------------------------------CChhHHHHHHhhcccCCC
Q psy3145 233 --------------------------------------------------------------HSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 233 --------------------------------------------------------------~s~~~y~qr~GRagR~g~ 250 (396)
.|..+|+||+|||||.|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~ 441 (1054)
T 1gku_B 362 DSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFA 441 (1054)
T ss_dssp GGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEET
T ss_pred ccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccC
Confidence 799999999999999887
Q ss_pred Cc--eEEEEEcCccHHHHHHHHHHcCC
Q psy3145 251 GG--VSVSMAGEVDRKLVKQVIKNAKN 275 (396)
Q Consensus 251 ~g--~~i~l~~~~e~~~~~~i~~~~~~ 275 (396)
.| .+++++...+...+..+.+.++.
T Consensus 442 ~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 442 GGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 76 48888888888888888887653
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=2.1e-24 Score=231.64 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=71.0
Q ss_pred HHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhc------------CCceEEeeCCCCHHHHHHHHHHhhc-C
Q psy3145 141 RKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLL------------GIKAGELHGNLTQPSRLESLRKFKD-E 203 (396)
Q Consensus 141 k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g 203 (396)
|...|..++.. ..+.++||||+++..++.++..|... |..+..+||+|++.+|..++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp HHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 44445555543 45689999999999999999999773 5666778999999999999999999 9
Q ss_pred CceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
+++|||||+++++|||+|+|++||+||.|+|+..|+||+|| ||. +.|.+++|+++.+..
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999999999999999999 999 699999999876543
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=3.7e-24 Score=224.27 Aligned_cols=124 Identities=17% Similarity=0.062 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc
Q psy3145 138 HLDRKALLAALVCR--TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA 215 (396)
Q Consensus 138 ~~~k~~~l~~ll~~--~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 215 (396)
...|...+...+.. ..+.++||||+|+..++.++..|...|+++..+||++.+.++..+.++|+.| .|+|||++++
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 45677777776643 3467899999999999999999999999999999999888888888888888 5899999999
Q ss_pred cccccCCc----------------------------------------------------cEEEEecCCCChhHHHHHHh
Q psy3145 216 RGLDIRGV----------------------------------------------------KTVINYRMPHSLEHYIHRVG 243 (396)
Q Consensus 216 ~Gidi~~v----------------------------------------------------~~VI~~~~p~s~~~y~qr~G 243 (396)
||+||+.+ .+||||+.|.|...|.||+|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999975 59999999999999999999
Q ss_pred hcccCCCCceEEEEEcCccH
Q psy3145 244 RTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 244 RagR~g~~g~~i~l~~~~e~ 263 (396)
||||.|.+|.+++|++..|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999997765
No 52
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=2.2e-25 Score=231.13 Aligned_cols=172 Identities=17% Similarity=0.146 Sum_probs=129.3
Q ss_pred ccccHHHHHHHHHHCCCCCc--EEEEeecCChhhhccCCCeEEEEEEEE---EecCChhhHHHHHHHHHhhcCCCcEEEE
Q psy3145 86 SIEEYNKDTEIVVAYCWSKG--TFQSNASMTSFLFLLRPPVLLCLLCFR---IRKDTHLDRKALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 86 ~~~~~~~i~~il~~~~~~~q--~ll~SAT~~~~~~~l~~p~~i~~~~~~---~~~~~~~~k~~~l~~ll~~~~~~~~iIF 160 (396)
+.+|...+..|++.++..+| ++++|||+|+.+.. ..|....+.... +........ +....++++|||
T Consensus 331 ~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~~-~~p~i~~v~~~~~~~i~~~~~~~~-------l~~~~~~~vLVF 402 (666)
T 3o8b_A 331 DSTTILGIGTVLDQAETAGARLVVLATATPPGSVTV-PHPNIEEVALSNTGEIPFYGKAIP-------IEAIRGGRHLIF 402 (666)
T ss_dssp SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCCC-CCTTEEEEECBSCSSEEETTEEEC-------GGGSSSSEEEEE
T ss_pred CccHHHHHHHHHHhhhhcCCceEEEECCCCCccccc-CCcceEEEeecccchhHHHHhhhh-------hhhccCCcEEEE
Confidence 34677788999999998888 67779999987632 223222110000 000000000 223357899999
Q ss_pred eCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEE----------Eec
Q psy3145 161 VPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVI----------NYR 230 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI----------~~~ 230 (396)
|+|++.++.+++.|+..|+++..+||+|++.+ |+++..+|||||+++++|||+| +++|| |||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyD 474 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFS 474 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECC
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccc
Confidence 99999999999999999999999999999875 5566679999999999999997 99988 777
Q ss_pred -----------CCCChhHHHHHHhhcccCCCCceEEEEEcCccHHH--H--HHHHHHcCC
Q psy3145 231 -----------MPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKL--V--KQVIKNAKN 275 (396)
Q Consensus 231 -----------~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~--~--~~i~~~~~~ 275 (396)
.|.|..+|+||+||+|| |++|. ++|+++.+... + ..+++..+.
T Consensus 475 ydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 475 LDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred cccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 98999 99998776544 3 455555443
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=1.4e-25 Score=238.82 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=131.8
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh--hccCCCeEEEE-------EEEEEecCChhhH---HHHHHHHHhhcCCCcEEEE
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL--FLLRPPVLLCL-------LCFRIRKDTHLDR---KALLAALVCRTFKDHTMIF 160 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~--~~l~~p~~i~~-------~~~~~~~~~~~~k---~~~l~~ll~~~~~~~~iIF 160 (396)
+..+.... ++.|++++|||++... .++.++..+.+ ..++......... ...+..+.....++++|||
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF 309 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLF 309 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 34445444 4889999999997654 44444333332 2222222222212 2233334444457899999
Q ss_pred eCChHHHHHHHHHHHh-----------cCCceEEeeCCCCHHHHHHHHHHhh-----cCCceEEEeecccccccccCCcc
Q psy3145 161 VPTKREAHEMHILLGL-----------LGIKAGELHGNLTQPSRLESLRKFK-----DEETDVLIATDVAARGLDIRGVK 224 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~r~~~~~~f~-----~g~~~vLvaT~~~~~Gidi~~v~ 224 (396)
|+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+|||||+++++|||+|+++
T Consensus 310 ~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~ 389 (773)
T 2xau_A 310 LTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIV 389 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeE
Confidence 9999999999999975 5788999999999999999999999 99999999999999999999999
Q ss_pred EEEEecC------------------CCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 225 TVINYRM------------------PHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 225 ~VI~~~~------------------p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
+||++++ |.|..+|+||+|||||. ++|.|+.|+++.+.
T Consensus 390 ~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 390 YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999888 89999999999999999 69999999986544
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=7.2e-24 Score=231.12 Aligned_cols=192 Identities=15% Similarity=0.213 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHh-cCCceEEeeCCCCHHHHHHHHHHhhcCC--ceEEEeeccc
Q psy3145 138 HLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGL-LGIKAGELHGNLTQPSRLESLRKFKDEE--TDVLIATDVA 214 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 214 (396)
...|...|..++....+.++||||+++..++.++..|.. .|+++..+||+|++.+|..+++.|++|+ ++|||||+++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 346888999999887789999999999999999999985 5999999999999999999999999998 9999999999
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc--CCCCccccCCCCCCCCCCC
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA--KNPVKHRIIPPGYPRLKTP 292 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~ 292 (396)
++|+|+|++++||+||.|+++..|+||+||+||.|+.|.++++....+....+.+.+.. +..+....+|.
T Consensus 567 ~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~-------- 638 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT-------- 638 (968)
T ss_dssp TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS--------
T ss_pred hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCC--------
Confidence 99999999999999999999999999999999999998766665433333334444444 33344333333
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhhccc
Q psy3145 293 SFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKMLKE 346 (396)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~a~~~l~~ 346 (396)
..++.+.+..++... +......+..+..+...........+.++.
T Consensus 639 ------~~~i~~~~~~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 683 (968)
T 3dmq_A 639 ------GRTIYDSVYNDLINY---LASPDQTEGFDDLIKNCREQHEALKAQLEQ 683 (968)
T ss_dssp ------HHHHHHHHHHHHHHH---HHCCSCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 556665555444332 222222334566666665555555544443
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=2e-25 Score=233.46 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=152.7
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC-CC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC-WS 103 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~-~~ 103 (396)
..+.++++||||||++.+.+|.. .+..++..++ ..
T Consensus 236 l~~~v~lvVIDEaH~l~d~~~g~--------------------------------------------~~~~~l~~l~~~~ 271 (677)
T 3rc3_A 236 VTTPYEVAVIDEIQMIRDPARGW--------------------------------------------AWTRALLGLCAEE 271 (677)
T ss_dssp SSSCEEEEEECSGGGGGCTTTHH--------------------------------------------HHHHHHHHCCEEE
T ss_pred hcccCCEEEEecceecCCccchH--------------------------------------------HHHHHHHccCccc
Confidence 45678999999999887765433 3356666666 78
Q ss_pred CcEEEEeecCChhh---hccCCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc
Q psy3145 104 KGTFQSNASMTSFL---FLLRPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK 180 (396)
Q Consensus 104 ~q~ll~SAT~~~~~---~~l~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~ 180 (396)
.+++++|||.+... .....+..+.. +. +..........+ ..+... ....+|||+|++.++.++..|...|+.
T Consensus 272 i~il~~SAT~~~i~~l~~~~~~~~~v~~-~~--r~~~l~~~~~~l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 272 VHLCGEPAAIDLVMELMYTTGEEVEVRD-YK--RLTPISVLDHAL-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp EEEEECGGGHHHHHHHHHHHTCCEEEEE-CC--CSSCEEECSSCC-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred eEEEeccchHHHHHHHHHhcCCceEEEE-ee--ecchHHHHHHHH-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 89999999964432 22234443321 00 000000000001 111122 345689999999999999999999999
Q ss_pred eEEeeCCCCHHHHHHHHHHhhc--CCceEEEeecccccccccCCccEEEEecC--------------CCChhHHHHHHhh
Q psy3145 181 AGELHGNLTQPSRLESLRKFKD--EETDVLIATDVAARGLDIRGVKTVINYRM--------------PHSLEHYIHRVGR 244 (396)
Q Consensus 181 ~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~v~~VI~~~~--------------p~s~~~y~qr~GR 244 (396)
+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||++++ |.|..+|+||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 8999999999 8899999999999
Q ss_pred cccCCCC---ceEEEEEcCccHHHHHHHHHHcCCCCccccCC
Q psy3145 245 TARAGKG---GVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIP 283 (396)
Q Consensus 245 agR~g~~---g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~ 283 (396)
|||.|.. |.|+.+ ...+...++++......++....+.
T Consensus 426 AGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~~~~l~ 466 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIRAAGLH 466 (677)
T ss_dssp BTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCCCEEEC
T ss_pred CCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhhhccCC
Confidence 9999965 655555 4556667777777766666554443
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.92 E-value=8.2e-25 Score=218.92 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=112.7
Q ss_pred CCCCcEEEEeecCChhhhcc---CCCeEEEEEEEEEecCChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc
Q psy3145 101 CWSKGTFQSNASMTSFLFLL---RPPVLLCLLCFRIRKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL 177 (396)
Q Consensus 101 ~~~~q~ll~SAT~~~~~~~l---~~p~~i~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~ 177 (396)
+.++|+++||||+++.+..+ +.|.. .+. ..+... +...+...+.. .++++||||++++.++.+++.|+..
T Consensus 122 ~~~~~~l~~SAT~~~~~~~~~~~~~~i~-~~~-~~~~~~----~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~ 194 (431)
T 2v6i_A 122 MGDAGAIFMTATPPGTTEAFPPSNSPII-DEE-TRIPDK----AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKA 194 (431)
T ss_dssp TTSCEEEEEESSCTTCCCSSCCCSSCCE-EEE-CCCCSS----CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCcchhhhcCCCCcee-ecc-ccCCHH----HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 56899999999999988332 22322 110 011111 11112223333 3568999999999999999999999
Q ss_pred CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccE-----------------EEEecCCCChhHHHH
Q psy3145 178 GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKT-----------------VINYRMPHSLEHYIH 240 (396)
Q Consensus 178 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~-----------------VI~~~~p~s~~~y~q 240 (396)
|+++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+|
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Q 269 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQ 269 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHH
Confidence 9999999997 578899999999999999999999999999 654 688999999999999
Q ss_pred HHhhcccCCC-CceEEEEE
Q psy3145 241 RVGRTARAGK-GGVSVSMA 258 (396)
Q Consensus 241 r~GRagR~g~-~g~~i~l~ 258 (396)
|+||+||.|. .|.++++.
T Consensus 270 r~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 270 RRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHTTSSCCTTCCCCEEEEC
T ss_pred hhhccCCCCCCCCeEEEEc
Confidence 9999999985 45555555
No 57
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=6.3e-24 Score=231.10 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=71.7
Q ss_pred HHHHHHHHHhh----cCCCcEEEEeCChHHHHHHHHHHHhc------------CCceEEeeCCCCHHHHHHHHHHhhc-C
Q psy3145 141 RKALLAALVCR----TFKDHTMIFVPTKREAHEMHILLGLL------------GIKAGELHGNLTQPSRLESLRKFKD-E 203 (396)
Q Consensus 141 k~~~l~~ll~~----~~~~~~iIF~~t~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g 203 (396)
|...|..++.. ..+.++||||+++..++.++..|... |..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 44445555544 34689999999999999999999876 5566677899999999999999999 9
Q ss_pred CceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRK 264 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~ 264 (396)
+++|||||+++++|||+|+|++||+||.|+|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999 999 589999999876543
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=3.7e-24 Score=236.60 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=131.0
Q ss_pred HHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEE--------EEEEEEEecCChhhHHHHHHHHHhh-cCCCcEE
Q psy3145 93 DTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLL--------CLLCFRIRKDTHLDRKALLAALVCR-TFKDHTM 158 (396)
Q Consensus 93 i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i--------~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~i 158 (396)
..++++.++.+.+++++|||+++.. ..+.++..+ .+..+... .. +..+...++.. ..+++++
T Consensus 741 ~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~-~~---~~~i~~~il~~l~~g~qvl 816 (1151)
T 2eyq_A 741 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE-YD---SMVVREAILREILRGGQVY 816 (1151)
T ss_dssp HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEE-CC---HHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEec-CC---HHHHHHHHHHHHhcCCeEE
Confidence 3566777778899999999987665 222222211 11222222 22 22222223222 2368999
Q ss_pred EEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecC-CCCh
Q psy3145 159 IFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRM-PHSL 235 (396)
Q Consensus 159 IF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~-p~s~ 235 (396)
|||+++..++.+++.|+.. +.++..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. ++++
T Consensus 817 vf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l 896 (1151)
T 2eyq_A 817 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 896 (1151)
T ss_dssp EECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCH
T ss_pred EEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCH
Confidence 9999999999999999988 889999999999999999999999999999999999999999999999999998 5799
Q ss_pred hHHHHHHhhcccCCCCceEEEEEcCc
Q psy3145 236 EHYIHRVGRTARAGKGGVSVSMAGEV 261 (396)
Q Consensus 236 ~~y~qr~GRagR~g~~g~~i~l~~~~ 261 (396)
..|+||+||+||.|+.|.|++++.+.
T Consensus 897 ~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 897 AQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999999998764
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.91 E-value=5.5e-24 Score=217.04 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=126.6
Q ss_pred HHHHHHHHCCCCCcEEEEeecCChhh------hccCCCeEEEE----------------EEEEEecC----------Ch-
Q psy3145 92 KDTEIVVAYCWSKGTFQSNASMTSFL------FLLRPPVLLCL----------------LCFRIRKD----------TH- 138 (396)
Q Consensus 92 ~i~~il~~~~~~~q~ll~SAT~~~~~------~~l~~p~~i~~----------------~~~~~~~~----------~~- 138 (396)
.+..+++.++...+++++|||+++.. ..+.+|..+.. ....+... ..
T Consensus 241 ~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T 2oca_A 241 SISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQ 320 (510)
T ss_dssp HHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHH
T ss_pred cHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchH
Confidence 45677788888899999999998764 11222221111 11111111 00
Q ss_pred ---------hhHHHHHHHHHhhc---CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce
Q psy3145 139 ---------LDRKALLAALVCRT---FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD 206 (396)
Q Consensus 139 ---------~~k~~~l~~ll~~~---~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 206 (396)
..+...+..++... .+.++|||++ .+.++.+++.|...+.++..+||+|++.+|.++++.|++|+.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~ 399 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI 399 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC
Confidence 11334445554433 3456667766 8889999999999988999999999999999999999999999
Q ss_pred EEEee-cccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEc
Q psy3145 207 VLIAT-DVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 207 vLvaT-~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
||||| +++++|+|+|++++||+++.|+|+..|+||+||+||.|+.|.++++++
T Consensus 400 vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 400 IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999 999999999999999999999999999999999999998775555554
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.90 E-value=1e-23 Score=239.63 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=154.2
Q ss_pred hhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCC
Q psy3145 23 DKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCW 102 (396)
Q Consensus 23 ~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~ 102 (396)
...++.++++||||+|.+.+ +.++.... ....+......++.
T Consensus 202 ~~~l~~v~~vIiDEvH~l~d-~RG~~lE~-------------------------------------~l~rl~~~~~~~~~ 243 (1724)
T 4f92_B 202 RTYTQLVRLIILDEIHLLHD-DRGPVLEA-------------------------------------LVARAIRNIEMTQE 243 (1724)
T ss_dssp HHHHTTEEEEEETTGGGGGS-TTHHHHHH-------------------------------------HHHHHHHHHHHHTC
T ss_pred chhhcCcCEEEEecchhcCC-ccHHHHHH-------------------------------------HHHHHHHHHHhCCC
Confidence 45678999999999997765 32222200 00122334456788
Q ss_pred CCcEEEEeecCChhh---hccC--------------CCeEEEEEEEEEecCChhhHHHHHHHHH-----hhcCCCcEEEE
Q psy3145 103 SKGTFQSNASMTSFL---FLLR--------------PPVLLCLLCFRIRKDTHLDRKALLAALV-----CRTFKDHTMIF 160 (396)
Q Consensus 103 ~~q~ll~SAT~~~~~---~~l~--------------~p~~i~~~~~~~~~~~~~~k~~~l~~ll-----~~~~~~~~iIF 160 (396)
+.|++++|||+|+.. .+|. .|+.+...++.+.......+...+...+ ....++++|||
T Consensus 244 ~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF 323 (1724)
T 4f92_B 244 DVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF 323 (1724)
T ss_dssp CCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEE
T ss_pred CCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEE
Confidence 999999999999755 3332 3555544444444433333333333322 22346799999
Q ss_pred eCChHHHHHHHHHHHhc-------------------------------------CCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 161 VPTKREAHEMHILLGLL-------------------------------------GIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
|+|++.|+.++..|.+. ...++++||||++.+|..+++.|++|
T Consensus 324 ~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G 403 (1724)
T 4f92_B 324 VHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK 403 (1724)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC
Confidence 99999999998887531 23588999999999999999999999
Q ss_pred CceEEEeecccccccccCCccEEEE----ec------CCCChhHHHHHHhhcccCCC--CceEEEEEcCccHHHHHHHHH
Q psy3145 204 ETDVLIATDVAARGLDIRGVKTVIN----YR------MPHSLEHYIHRVGRTARAGK--GGVSVSMAGEVDRKLVKQVIK 271 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~~v~~VI~----~~------~p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~e~~~~~~i~~ 271 (396)
.++|||||+++++|||+|..++||. |+ .|-++.+|.||+|||||.|. .|.+++++...+...+..+..
T Consensus 404 ~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 404 HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN 483 (1724)
T ss_dssp CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTT
T ss_pred CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHc
Confidence 9999999999999999999999996 43 45689999999999999885 599999998887766655543
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.89 E-value=8.1e-23 Score=232.34 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=154.4
Q ss_pred chhcccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCC
Q psy3145 22 SDKEVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYC 101 (396)
Q Consensus 22 ~~~~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~ 101 (396)
....+++++++|+||+|.+.+. .++... .....+..+...++
T Consensus 1040 ~~~~l~~v~lvViDE~H~l~d~-rg~~le-------------------------------------~il~rl~~i~~~~~ 1081 (1724)
T 4f92_B 1040 QRKNVQNINLFVVDEVHLIGGE-NGPVLE-------------------------------------VICSRMRYISSQIE 1081 (1724)
T ss_dssp TCHHHHSCSEEEECCGGGGGST-THHHHH-------------------------------------HHHHHHHHHHHTTS
T ss_pred cccccceeeEEEeechhhcCCC-CCccHH-------------------------------------HHHHHHHHHHhhcC
Confidence 3456889999999999988763 333320 00123445556678
Q ss_pred CCCcEEEEeecCChhh---hccC-------------CCeEEEEEEEEEecCChhhHHH-----HHHHHHhhcCCCcEEEE
Q psy3145 102 WSKGTFQSNASMTSFL---FLLR-------------PPVLLCLLCFRIRKDTHLDRKA-----LLAALVCRTFKDHTMIF 160 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~---~~l~-------------~p~~i~~~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~iIF 160 (396)
.+.|++++|||+++.. .++. .|+.+..............+.. ....+.....++++|||
T Consensus 1082 ~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF 1161 (1724)
T 4f92_B 1082 RPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVF 1161 (1724)
T ss_dssp SCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeee
Confidence 8999999999998765 2221 2444433333332222222221 11122234457899999
Q ss_pred eCChHHHHHHHHHHHhc----------------------------------CCceEEeeCCCCHHHHHHHHHHhhcCCce
Q psy3145 161 VPTKREAHEMHILLGLL----------------------------------GIKAGELHGNLTQPSRLESLRKFKDEETD 206 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 206 (396)
|+|++.|+.++..|... ...++++||||++.+|..+++.|++|.++
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 99999999988766321 23689999999999999999999999999
Q ss_pred EEEeecccccccccCCccEEEE----e------cCCCChhHHHHHHhhcccCCC--CceEEEEEcCccHHHHHHHH
Q psy3145 207 VLIATDVAARGLDIRGVKTVIN----Y------RMPHSLEHYIHRVGRTARAGK--GGVSVSMAGEVDRKLVKQVI 270 (396)
Q Consensus 207 vLvaT~~~~~Gidi~~v~~VI~----~------~~p~s~~~y~qr~GRagR~g~--~g~~i~l~~~~e~~~~~~i~ 270 (396)
|||||+++++|||+|...+||. | ..|-++.+|+||+|||||.|. .|.|++++.+.+...++++.
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 9999999999999999999983 2 346789999999999999997 59999999988887777664
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.89 E-value=2.2e-23 Score=210.51 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccc
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLD 219 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 219 (396)
.|...+..++....++++||||+++..++.++..|. +..+||++++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 335 ~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gld 409 (472)
T 2fwr_A 335 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGID 409 (472)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSC
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcc
Confidence 466778888877778899999999999999999883 678999999999999999999999999999999999999
Q ss_pred cCCccEEEEecCCCChhHHHHHHhhcccCCCC-ceE--EEEEcC
Q psy3145 220 IRGVKTVINYRMPHSLEHYIHRVGRTARAGKG-GVS--VSMAGE 260 (396)
Q Consensus 220 i~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~-g~~--i~l~~~ 260 (396)
+|++++||+++.|+|+..|+||+||+||.|+. +.+ +.+++.
T Consensus 410 lp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 410 VPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp SCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred cccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999954 344 445654
No 63
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.89 E-value=4.9e-24 Score=226.19 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=118.8
Q ss_pred CCCcEEEEeecCChhh---hccCCC--eEEE--------EEEEEEecCChhhHHHHHHHHHhh-cCCCcEEEEeCCh---
Q psy3145 102 WSKGTFQSNASMTSFL---FLLRPP--VLLC--------LLCFRIRKDTHLDRKALLAALVCR-TFKDHTMIFVPTK--- 164 (396)
Q Consensus 102 ~~~q~ll~SAT~~~~~---~~l~~p--~~i~--------~~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iIF~~t~--- 164 (396)
.+.|+++||||+++.. ....+. ..+. +....+ .......++..+... ..+++++|||++.
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~---~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~s 591 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLV---PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEES 591 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCC---CSSTHHHHHHHHHHHTTTSCCBCCBCCCC---
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEe---ccchHHHHHHHHHHHHhcCCcEEEEecchhhh
Confidence 4789999999987765 111111 1110 011111 112233333333322 2367899999965
Q ss_pred -----HHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC-Ch
Q psy3145 165 -----REAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH-SL 235 (396)
Q Consensus 165 -----~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~-s~ 235 (396)
..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|. +.
T Consensus 592 e~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l 671 (780)
T 1gm5_A 592 DKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGL 671 (780)
T ss_dssp -----CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCT
T ss_pred hhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCH
Confidence 457888898887 478999999999999999999999999999999999999999999999999999996 78
Q ss_pred hHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 236 EHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 236 ~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
..|.||+||+||.|+.|.|++++++.+.
T Consensus 672 ~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 672 AQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp THHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred HHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 9999999999999999999999885433
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.87 E-value=2.5e-21 Score=201.07 Aligned_cols=97 Identities=23% Similarity=0.329 Sum_probs=87.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc--------eEEeeCCCCHHHHHHHHHHhhcCCce---EEEeecccccccccC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK--------AGELHGNLTQPSRLESLRKFKDEETD---VLIATDVAARGLDIR 221 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~--------~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~ 221 (396)
..+++||||+++..|+.++..|...+.. +..+||++++ +|..++++|++|+.+ |||||+++++|+|+|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 3579999999999999999999876543 7788998764 799999999998866 889999999999999
Q ss_pred CccEEEEecCCCChhHHHHHHhhcccCCC
Q psy3145 222 GVKTVINYRMPHSLEHYIHRVGRTARAGK 250 (396)
Q Consensus 222 ~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 250 (396)
++++||+++.|+|+..|+||+||+||.|.
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999875
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=1.4e-20 Score=193.66 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=114.1
Q ss_pred ChhhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc
Q psy3145 137 THLDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA 214 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 214 (396)
....|...+...+... .+.|+||||+|+..++.++..|...|+++..+||+..+.++..+..+|+.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 3456777777766542 467999999999999999999999999999999997666666666677666 599999999
Q ss_pred ccccccC--------CccEEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH-------HHHHHHHHHcC
Q psy3145 215 ARGLDIR--------GVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR-------KLVKQVIKNAK 274 (396)
Q Consensus 215 ~~Gidi~--------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~-------~~~~~i~~~~~ 274 (396)
+||+||+ +..+|||++.|.|...|+||+|||||.|.+|.+++|++..|. ..++.+.+.++
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 9999998 667999999999999999999999999999999999998773 33444555554
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.84 E-value=2.6e-20 Score=189.32 Aligned_cols=122 Identities=12% Similarity=0.159 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhhcC-Cce-EEEeeccc
Q psy3145 140 DRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFKDE-ETD-VLIATDVA 214 (396)
Q Consensus 140 ~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~ 214 (396)
.|...+..++... .+.++||||+++..++.++..|... |+.+..+||++++.+|.++++.|++| ..+ +|+||+++
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~ 404 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 404 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc
Confidence 3555555555443 4679999999999999999999885 99999999999999999999999998 555 78999999
Q ss_pred ccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceE--EEEEcCc
Q psy3145 215 ARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS--VSMAGEV 261 (396)
Q Consensus 215 ~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--i~l~~~~ 261 (396)
++|+|+|++++||+||.|||+..|.||+||++|.|+.+.+ +.|+...
T Consensus 405 ~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 405 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp -CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred cCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999999999987655 4456654
No 67
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=1.3e-20 Score=176.74 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeCCCCHHHHHHHHHHhhcC-Cce-EEEeec
Q psy3145 138 HLDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHGNLTQPSRLESLRKFKDE-ETD-VLIATD 212 (396)
Q Consensus 138 ~~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLvaT~ 212 (396)
...|...|..++... .+.++||||+++..++.+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 457888888888765 5789999999999999999999885 99999999999999999999999999 677 789999
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCceE--EEEEcCc
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS--VSMAGEV 261 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--i~l~~~~ 261 (396)
++++|+|++++++||+||.|||+..|.||+||++|.|+.+.+ +.|++..
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999987654 5566654
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.3e-19 Score=188.12 Aligned_cols=136 Identities=18% Similarity=0.294 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce---EEEeecc
Q psy3145 139 LDRKALLAALVCRT--FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD---VLIATDV 213 (396)
Q Consensus 139 ~~k~~~l~~ll~~~--~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 213 (396)
..|...|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 34677777777654 367999999999999999999999999999999999999999999999986654 8999999
Q ss_pred cccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce--EEEEEcCc--cHHHHHHHHHHcC
Q psy3145 214 AARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV--SVSMAGEV--DRKLVKQVIKNAK 274 (396)
Q Consensus 214 ~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~i~l~~~~--e~~~~~~i~~~~~ 274 (396)
++.|||++.+++||+||.|||+..+.||+||++|.|+... ++.|++.. |..++....++..
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754 45566655 5566665555543
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.69 E-value=1.4e-16 Score=166.91 Aligned_cols=134 Identities=11% Similarity=0.193 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCce---EEEeec
Q psy3145 139 LDRKALLAALVCR---TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETD---VLIATD 212 (396)
Q Consensus 139 ~~k~~~l~~ll~~---~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 212 (396)
..|...+..++.. ..+.++||||+++..++.+...|...|+.+..+||++++.+|.+++++|++|... +|++|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 4577777776654 3478999999999999999999999999999999999999999999999998764 899999
Q ss_pred ccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCCce--EEEEEcCc--cHHHHHHHHHH
Q psy3145 213 VAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV--SVSMAGEV--DRKLVKQVIKN 272 (396)
Q Consensus 213 ~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~i~l~~~~--e~~~~~~i~~~ 272 (396)
++++|+|++++++||+||.|||+..|.|++||++|.|+... ++.|++.. |..++.....+
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 44466654 44444444433
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.69 E-value=1.4e-15 Score=165.52 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=89.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC------------Cce-EEeeCC----------C----------CH----------
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG------------IKA-GELHGN----------L----------TQ---------- 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~------------~~~-~~lhg~----------~----------~~---------- 190 (396)
+.++||||+|+..|..++..|...+ +++ ..+||+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999997754 455 445542 2 22
Q ss_pred -------------------HHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCCChhHHHHHHhhcccCCCC
Q psy3145 191 -------------------PSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKG 251 (396)
Q Consensus 191 -------------------~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 251 (396)
.+|..++++|++|++++||+|+.+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 788999999999999999999998854
Q ss_pred ----ceEEEEEcC
Q psy3145 252 ----GVSVSMAGE 260 (396)
Q Consensus 252 ----g~~i~l~~~ 260 (396)
|.++.|++.
T Consensus 696 ~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 696 TKTFGNIVTFRDL 708 (1038)
T ss_dssp TCCSEEEEESSCC
T ss_pred CCCcEEEEEcccc
Confidence 777777753
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.70 E-value=8.5e-08 Score=98.14 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=65.4
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEE--eecccccccccCC----ccE
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLI--ATDVAARGLDIRG----VKT 225 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~Gidi~~----v~~ 225 (396)
..++.++||++|....+.+++.|.. .. ...+|.. .+|.++++.|+.|. .||+ ||..+++|||+|+ +++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 3467899999999999999988864 22 4456653 46888999999865 5666 8999999999997 899
Q ss_pred EEEecCCCC-h-----------------------------hHHHHHHhhcccCCCC-ceEEEEEc
Q psy3145 226 VINYRMPHS-L-----------------------------EHYIHRVGRTARAGKG-GVSVSMAG 259 (396)
Q Consensus 226 VI~~~~p~s-~-----------------------------~~y~qr~GRagR~g~~-g~~i~l~~ 259 (396)
||++++|.. + ..+.|.+||+-|.... |. +++++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD 519 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCD 519 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEES
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEc
Confidence 999999832 1 2355999999997544 54 44444
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.49 E-value=3.9e-08 Score=89.79 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=50.6
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||++.++||++. +..+++.+++++
T Consensus 173 ~~~~~~~lViDEah~l~~~~~~~~--------------------------------------------~~~i~~~~~~~~ 208 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMGFEPQ--------------------------------------------IRKIVDQIRPDR 208 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTTCHHH--------------------------------------------HHHHHTTSCSSC
T ss_pred CcccccEEEEeCHHHHhhhCcHHH--------------------------------------------HHHHHHhCCccc
Confidence 466789999999999988875444 478888899999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
|+++||||+|+.+ .++++|+.|.+
T Consensus 209 q~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 209 QTLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999988 67889988764
No 73
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.46 E-value=6.1e-08 Score=87.52 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=49.1
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||++.++||+ ..+..++..+++++
T Consensus 164 ~~~~~~~lViDEah~~~~~~~~--------------------------------------------~~~~~i~~~~~~~~ 199 (228)
T 3iuy_A 164 NLRSITYLVIDEADKMLDMEFE--------------------------------------------PQIRKILLDVRPDR 199 (228)
T ss_dssp CCTTCCEEEECCHHHHHHTTCH--------------------------------------------HHHHHHHHHSCSSC
T ss_pred CcccceEEEEECHHHHhccchH--------------------------------------------HHHHHHHHhCCcCC
Confidence 3567899999999988887654 44578889999999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEE
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
|+++||||+|+.+ .++++|+.+.
T Consensus 200 ~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 200 QTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999988 6788898764
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.43 E-value=9.4e-06 Score=85.76 Aligned_cols=39 Identities=23% Similarity=0.105 Sum_probs=35.6
Q ss_pred EEEEecCCCChhHHHHHHhhcccCCCCceEEEEEcCccH
Q psy3145 225 TVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDR 263 (396)
Q Consensus 225 ~VI~~~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~ 263 (396)
+||-...+.|..--.|-.||+||-|.+|.+.+|++-+|.
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 899999999999999999999999999999999886553
No 75
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.33 E-value=2.1e-07 Score=83.48 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=49.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||++.++|| ...+..++..++++.
T Consensus 147 ~~~~~~~lViDEah~~~~~~~--------------------------------------------~~~l~~i~~~~~~~~ 182 (219)
T 1q0u_A 147 DVHTAHILVVDEADLMLDMGF--------------------------------------------ITDVDQIAARMPKDL 182 (219)
T ss_dssp CGGGCCEEEECSHHHHHHTTC--------------------------------------------HHHHHHHHHTSCTTC
T ss_pred CcCcceEEEEcCchHHhhhCh--------------------------------------------HHHHHHHHHhCCccc
Confidence 356788999999998887664 345578889999999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEEE
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
|+++||||+|+.+ .++++|..+.+
T Consensus 183 ~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 183 QMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 9999999999988 67889987755
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.31 E-value=1.6e-07 Score=88.84 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=49.0
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++||||||++.+.+ +|...+..|++.++.++|
T Consensus 233 l~~l~~lVlDEad~l~~~~-------------------------------------------~~~~~~~~i~~~~~~~~q 269 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQ-------------------------------------------GHQDQSIRIQRMLPRNCQ 269 (300)
T ss_dssp GGGCSEEEETTHHHHHHST-------------------------------------------THHHHHHHHHTTSCTTCE
T ss_pred hhhceEEEEeCHHHHhhcc-------------------------------------------CcHHHHHHHHHhCCCCCE
Confidence 5678899999999877621 334566788899999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
+++||||+|+.+ .++++|..|.+
T Consensus 270 ~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 270 MLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp EEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999999998 78899987754
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.30 E-value=2.2e-07 Score=84.22 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=48.1
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.++||. ..+..++..++.++|
T Consensus 169 ~~~~~~lViDEah~~~~~~~~--------------------------------------------~~~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMGFA--------------------------------------------DTMNAVIENLPKKRQ 204 (236)
T ss_dssp CTTCCEEEETTHHHHHHTTTH--------------------------------------------HHHHHHHHTSCTTSE
T ss_pred cccccEEEEeChHHHhcCCcH--------------------------------------------HHHHHHHHhCCCCCe
Confidence 457889999999998887653 445788899999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
+++||||+|+.+ .++.+|..+.
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 999999999988 6778887764
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.30 E-value=2.4e-07 Score=83.80 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=48.5
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||++.++| .|.+.+..|++.++..+
T Consensus 163 ~~~~~~~lViDEah~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~ 199 (230)
T 2oxc_A 163 NPGSIRLFILDEADKLLEEG-------------------------------------------SFQEQINWIYSSLPASK 199 (230)
T ss_dssp CGGGCCEEEESSHHHHHSTT-------------------------------------------SSHHHHHHHHHHSCSSC
T ss_pred ccccCCEEEeCCchHhhcCc-------------------------------------------chHHHHHHHHHhCCCCC
Confidence 35678899999999888876 13455678899999999
Q ss_pred cEEEEeecCChhh-----hccCCCeEEE
Q psy3145 105 GTFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 105 q~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
|+++||||+|+.+ .++.+|..+.
T Consensus 200 ~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 200 QMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred eEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999987 6778887663
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.29 E-value=2.2e-07 Score=85.30 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=48.4
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++|+ ..+..++..++.++|
T Consensus 184 l~~~~~lViDEah~l~~~~~~--------------------------------------------~~l~~i~~~~~~~~~ 219 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMDFE--------------------------------------------TEVDKILKVIPRDRK 219 (249)
T ss_dssp CTTCCEEEECSHHHHHHTTCH--------------------------------------------HHHHHHHHSSCSSSE
T ss_pred ccccCEEEEcChhhhhccChH--------------------------------------------HHHHHHHHhCCCCCe
Confidence 567889999999988887654 445788888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
+++||||+|+.+ .++++|+.+.
T Consensus 220 ~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 220 TFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 999999999988 6788998764
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.27 E-value=3.7e-07 Score=80.73 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=46.6
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+.+| ...+..++..++++.|
T Consensus 144 ~~~~~~lViDEah~~~~~~~--------------------------------------------~~~l~~i~~~~~~~~~ 179 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQDF--------------------------------------------VQIMEDIILTLPKNRQ 179 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTT--------------------------------------------HHHHHHHHHHSCTTCE
T ss_pred cccCCEEEEEChHHhHhhCc--------------------------------------------HHHHHHHHHhCCccce
Confidence 55788999999998776543 4556888899999999
Q ss_pred EEEEeecCChhh-----hccCCCeEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLL 126 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i 126 (396)
++++|||+|+.+ .++.+|..+
T Consensus 180 ~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 180 ILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999988 678888765
No 81
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.27 E-value=2.6e-07 Score=81.71 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=47.4
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++| ...+..++..++.++|
T Consensus 142 ~~~~~~iViDEah~~~~~~~--------------------------------------------~~~~~~i~~~~~~~~~ 177 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGF--------------------------------------------EEEVEALLSATPPSRQ 177 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTC--------------------------------------------HHHHHHHHHTSCTTSE
T ss_pred hhhceEEEEEChhHhhccch--------------------------------------------HHHHHHHHHhCCccCe
Confidence 56788999999998877654 3455788888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
++++|||+|+.+ .++.+|..+.
T Consensus 178 ~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 178 TLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp EEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 999999999887 6788898764
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.26 E-value=2.7e-07 Score=83.90 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=47.2
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.++|| ...+..+++.++..+|
T Consensus 171 ~~~~~~lViDEah~~~~~~~--------------------------------------------~~~l~~i~~~~~~~~~ 206 (237)
T 3bor_A 171 PKWIKMFVLDEADEMLSRGF--------------------------------------------KDQIYEIFQKLNTSIQ 206 (237)
T ss_dssp STTCCEEEEESHHHHHHTTC--------------------------------------------HHHHHHHHHHSCTTCE
T ss_pred cccCcEEEECCchHhhccCc--------------------------------------------HHHHHHHHHhCCCCCe
Confidence 45678899999998877654 3455788899999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
+++||||+|+.+ .++++|..+.
T Consensus 207 ~i~~SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 207 VVLLSATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp EEEECSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEEEEEecCHHHHHHHHHHCCCCEEEE
Confidence 999999999988 6788998764
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.21 E-value=4.5e-07 Score=81.33 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=47.3
Q ss_pred ccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCCc
Q psy3145 26 VEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSKG 105 (396)
Q Consensus 26 ~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~q 105 (396)
+.+++++|+||||++.+++| ...+..++..++++.|
T Consensus 153 ~~~~~~iViDEah~~~~~~~--------------------------------------------~~~l~~i~~~~~~~~~ 188 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGF--------------------------------------------KEQIYQIFTLLPPTTQ 188 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTC--------------------------------------------HHHHHHHHHHSCTTCE
T ss_pred hhhCcEEEEcChhHHhhhhh--------------------------------------------HHHHHHHHHhCCccCe
Confidence 45688999999998877654 3445788888999999
Q ss_pred EEEEeecCChhh-----hccCCCeEEEE
Q psy3145 106 TFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 106 ~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
++++|||+|+.+ .++.+|..+.+
T Consensus 189 ~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 189 VVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999987 67888987643
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.18 E-value=5.3e-07 Score=83.38 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHCCCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAYCWSK 104 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~~~~~ 104 (396)
.+.+++++|+||||++.++||+ +.+..|++.++..+
T Consensus 198 ~~~~l~~lViDEah~l~~~~~~--------------------------------------------~~l~~i~~~~~~~~ 233 (262)
T 3ly5_A 198 MYKNLQCLVIDEADRILDVGFE--------------------------------------------EELKQIIKLLPTRR 233 (262)
T ss_dssp CCTTCCEEEECSHHHHHHTTCH--------------------------------------------HHHHHHHHHSCSSS
T ss_pred ccccCCEEEEcChHHHhhhhHH--------------------------------------------HHHHHHHHhCCCCC
Confidence 4567899999999998887654 44578899999999
Q ss_pred cEEEEeecCChhh
Q psy3145 105 GTFQSNASMTSFL 117 (396)
Q Consensus 105 q~ll~SAT~~~~~ 117 (396)
|+++||||+|+.+
T Consensus 234 q~l~~SAT~~~~v 246 (262)
T 3ly5_A 234 QTMLFSATQTRKV 246 (262)
T ss_dssp EEEEECSSCCHHH
T ss_pred eEEEEEecCCHHH
Confidence 9999999999988
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.16 E-value=9.9e-07 Score=78.92 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHCCCCCcEEEEeecCChhh-----hccCCCeEEE
Q psy3145 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFL-----FLLRPPVLLC 127 (396)
Q Consensus 88 ~~~~~i~~il~~~~~~~q~ll~SAT~~~~~-----~~l~~p~~i~ 127 (396)
+|...+..+++.++.++|++++|||+|+.+ .++++|..+.
T Consensus 175 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 175 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 456778889999999999999999999987 6788998764
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.12 E-value=1.5e-06 Score=79.07 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=48.9
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHHC-CCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVAY-CWS 103 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~~-~~~ 103 (396)
.+.+++++|+||||++.++++. +|.+.+..++..+ +.+
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~-----------------------------------------~~~~~~~~i~~~~~~~~ 210 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKT-----------------------------------------GFRDQLASIFLACTSHK 210 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC-------------------------------------------CHHHHHHHHHHHCCCTT
T ss_pred ccccCcEEEEeChHHhcccccc-----------------------------------------cHHHHHHHHHHhcCCCC
Confidence 3667899999999998886531 3456777887776 458
Q ss_pred CcEEEEeecCChhh-----hccCCCeEEEE
Q psy3145 104 KGTFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 104 ~q~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
.|+++||||+|+.+ .++++|+.+.+
T Consensus 211 ~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~ 240 (245)
T 3dkp_A 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSI 240 (245)
T ss_dssp CEEEEEESSCCHHHHHHHHHHSSSCEEEEE
T ss_pred cEEEEEeccCCHHHHHHHHHhCCCCEEEEe
Confidence 89999999999988 67889987654
No 87
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.11 E-value=9.7e-07 Score=80.87 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=46.0
Q ss_pred cccceeEEEeccccccccCCCCCCceEEeCCcccccccccCCCcccccccceeecccCCccccccHHHHHHHHHH--CCC
Q psy3145 25 EVEGLRVYVETEACPKANLGWYPQTAIVPNLPRLKFSSEYQPKKFKTKKITDFDNDFSFVSSIEEYNKDTEIVVA--YCW 102 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf~~~~~Iv~t~~~l~~~~~~~~~~l~~~~id~~De~~~~l~~~~~~~~i~~il~~--~~~ 102 (396)
.+.+++++|+||||++.++||++. +..|+.. ++.
T Consensus 171 ~~~~~~~lViDEah~~~~~~~~~~--------------------------------------------~~~i~~~~~~~~ 206 (253)
T 1wrb_A 171 SLEFCKYIVLDEADRMLDMGFEPQ--------------------------------------------IRKIIEESNMPS 206 (253)
T ss_dssp CCTTCCEEEEETHHHHHHTTCHHH--------------------------------------------HHHHHHSSCCCC
T ss_pred ChhhCCEEEEeCHHHHHhCchHHH--------------------------------------------HHHHHhhccCCC
Confidence 356788999999999888775444 4666763 344
Q ss_pred --CCcEEEEeecCChhh-----hccCCCeEEEE
Q psy3145 103 --SKGTFQSNASMTSFL-----FLLRPPVLLCL 128 (396)
Q Consensus 103 --~~q~ll~SAT~~~~~-----~~l~~p~~i~~ 128 (396)
++|+++||||+|+.+ .++.+|..+.+
T Consensus 207 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 207 GINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 789999999999988 67788987654
No 88
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.08 E-value=2.9e-05 Score=73.38 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccccc
Q psy3145 139 LDRKALLAALVCRTF--KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~--~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 216 (396)
+.|+.+|..++.... +.+++||++..+..+-+-.+|...|+...-+.|.....+ .+ -.++...+.+.|..++-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCC
Confidence 568999998886543 679999999999999999999999999999999854432 21 12455566666887787
Q ss_pred ccc-----cCCccEEEEecCCCChhHH-HHHHhhcccCC----CCceEEEEEcCccHHH
Q psy3145 217 GLD-----IRGVKTVINYRMPHSLEHY-IHRVGRTARAG----KGGVSVSMAGEVDRKL 265 (396)
Q Consensus 217 Gid-----i~~v~~VI~~~~p~s~~~y-~qr~GRagR~g----~~g~~i~l~~~~e~~~ 265 (396)
|+| ....+.||-||..|++..= +|.+-|+.|.| +.-.++.|++....+.
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 886 6789999999999999885 89898888873 3467788888765443
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.91 E-value=4.8e-05 Score=78.91 Aligned_cols=102 Identities=15% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec--ccccccccCC--ccEEEEe
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD--VAARGLDIRG--VKTVINY 229 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gidi~~--v~~VI~~ 229 (396)
++.++||++|....+.+++.|.. +... ..-+++..++..++++|+ ++-.||++|. .+++|||+|+ +++||..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 56799999999999999988862 2222 445566778999999999 8888999985 8999999985 6699998
Q ss_pred cCCCC-------------------h----------hHHHHHHhhcccCCCCceEEEEEc
Q psy3145 230 RMPHS-------------------L----------EHYIHRVGRTARAGKGGVSVSMAG 259 (396)
Q Consensus 230 ~~p~s-------------------~----------~~y~qr~GRagR~g~~g~~i~l~~ 259 (396)
.+|.. . ....|-+||+=|....--++++++
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 88732 1 113599999988765533444444
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.43 E-value=0.0032 Score=64.19 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=55.3
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEee--cccccccccC-----Ccc
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIAT--DVAARGLDIR-----GVK 224 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gidi~-----~v~ 224 (396)
..++.++||++|....+.+++. .+..+..-..+++ +.+.++.|+.+.-.||+|| ..+.+|||+| .++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 3467999999999999998872 3444433223445 3557788854344799998 6999999999 478
Q ss_pred EEEEecCCC
Q psy3145 225 TVINYRMPH 233 (396)
Q Consensus 225 ~VI~~~~p~ 233 (396)
+||..++|.
T Consensus 465 ~viI~~lPf 473 (551)
T 3crv_A 465 DVVIVGIPY 473 (551)
T ss_dssp EEEEESCCC
T ss_pred EEEEEcCCC
Confidence 999988763
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.29 E-value=5.2e-05 Score=68.59 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhh
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFL 117 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~ 117 (396)
..+..++... ++.|+++||||++...
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 3556666665 4799999999999887
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.65 E-value=0.0011 Score=61.27 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCCCcEEEEeecCChhh
Q psy3145 92 KDTEIVVAYCWSKGTFQSNASMTSFL 117 (396)
Q Consensus 92 ~i~~il~~~~~~~q~ll~SAT~~~~~ 117 (396)
.+..++..++...+++++|||+++..
T Consensus 241 ~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 241 SISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred cHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 45677788877999999999998654
No 93
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.39 E-value=0.006 Score=53.33 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=11.5
Q ss_pred cccceeEEEeccccccccCCC
Q psy3145 25 EVEGLRVYVETEACPKANLGW 45 (396)
Q Consensus 25 ~~~~l~~lViDEAh~~~~~gf 45 (396)
.+.+++++|+||||++.+.++
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~ 179 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAV 179 (216)
T ss_dssp CGGGCSEEEETTC-------C
T ss_pred chhcccEEEEECchhhccCCc
Confidence 456789999999998876543
No 94
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.28 E-value=0.073 Score=56.40 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=66.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccccCCccEEEE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLDIRGVKTVIN 228 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gidi~~v~~VI~ 228 (396)
+.+++|.++|+.-+...++.+... |+++..+||+++..+|...++.+.+|..+|+|+|... ...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 578999999999988888776544 7999999999999999999999999999999999854 44578889998886
Q ss_pred ecC
Q psy3145 229 YRM 231 (396)
Q Consensus 229 ~~~ 231 (396)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 544
No 95
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.54 E-value=0.11 Score=50.26 Aligned_cols=79 Identities=10% Similarity=0.104 Sum_probs=65.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc----cccccCCccE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA----RGLDIRGVKT 225 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~Gidi~~v~~ 225 (396)
.+.++||.++|+.-+..++..+.. .|+++..+||+.+..++....+.+..|..+|+|+|+-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 467999999999999999999988 588999999999999999999999999999999998321 1245567888
Q ss_pred EEEecC
Q psy3145 226 VINYRM 231 (396)
Q Consensus 226 VI~~~~ 231 (396)
||.=..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 876443
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.29 E-value=0.03 Score=50.39 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=14.1
Q ss_pred HHHHHCCCCCcEEEEeecCChh
Q psy3145 95 EIVVAYCWSKGTFQSNASMTSF 116 (396)
Q Consensus 95 ~il~~~~~~~q~ll~SAT~~~~ 116 (396)
.++..++ ..+++++|||++..
T Consensus 211 ~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 211 QIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHHHTCC-CSEEEEEEESCC--
T ss_pred HHHHhcc-CCEEEEEecCCCCC
Confidence 3445454 67899999999853
No 97
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.38 E-value=0.42 Score=52.91 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-cccccccCCccEEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-AARGLDIRGVKTVI 227 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gidi~~v~~VI 227 (396)
.+.+++|.++|+.-+...++.+... ++++..++|..+..++...++.+..|..+|+|+|.. +...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4679999999999998888877643 678999999999999999999999999999999964 45557788888777
Q ss_pred E
Q psy3145 228 N 228 (396)
Q Consensus 228 ~ 228 (396)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.07 E-value=1.7 Score=37.64 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=54.6
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCCc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRGV 223 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~v 223 (396)
.++||.++|+.-+..+++.++.. ++++..++|+.+...+... +..+..+|+|+|+-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887665 7889999999887665443 445667899999721 233567778
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
++||.=+
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8777543
No 99
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.88 E-value=1.7 Score=38.40 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=53.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccc-cccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAA-RGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gidi~~v 223 (396)
+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+.. ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 567999999999998887776553 8899999999988766555443 468999996 222 23567788
Q ss_pred cEEEE
Q psy3145 224 KTVIN 228 (396)
Q Consensus 224 ~~VI~ 228 (396)
+++|.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87775
No 100
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.77 E-value=0.4 Score=52.84 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc-c---ccccCCccE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA-R---GLDIRGVKT 225 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~---Gidi~~v~~ 225 (396)
.+.++||.++|+.-|..++..+.. .++++..+||+++..+|....+.+..|..+|+|+|+-.- . -++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999988 567999999999999999999999999999999997321 1 155678888
Q ss_pred EEEecC
Q psy3145 226 VINYRM 231 (396)
Q Consensus 226 VI~~~~ 231 (396)
||.=+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 886443
No 101
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.59 E-value=1.1 Score=40.17 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=53.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----c--ccccccC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----A--ARGLDIR 221 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~Gidi~ 221 (396)
.+.++||.++|+.-+..+++.++.. ++.+..++|+.+...+...+ .+..+|+|+|+- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3567999999999998888777654 78999999998876544333 246789999962 1 1346777
Q ss_pred CccEEEEe
Q psy3145 222 GVKTVINY 229 (396)
Q Consensus 222 ~v~~VI~~ 229 (396)
.+++||.=
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 78877753
No 102
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.05 E-value=0.59 Score=41.15 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIR 221 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~ 221 (396)
.+.++||.++|+.-+..+++.+... ++++..++|+.+..++...+ ...+|+|+|+-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 67889999998876654433 247899999831 2235666
Q ss_pred CccEEEE
Q psy3145 222 GVKTVIN 228 (396)
Q Consensus 222 ~v~~VI~ 228 (396)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777665
No 103
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.61 E-value=0.96 Score=46.25 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHh--hcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF--KDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f--~~g~~~vLvaT~ 212 (396)
++++||.++++.-++.....|...|+.+..++|+++..++..++..+ ..+..+++++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999999888888 578899999998
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.38 E-value=0.54 Score=47.30 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=62.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCCccEEE
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRGVKTVI 227 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~v~~VI 227 (396)
.+++||.++++.-+......|...|+.+..+||+.+..++..+...+..|..+++++|+-- ...++..++++||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 4789999999999999999999999999999999999999999999999999999999721 1123335566655
Q ss_pred E
Q psy3145 228 N 228 (396)
Q Consensus 228 ~ 228 (396)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 4
No 105
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.89 E-value=3.9 Score=34.67 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cc-cccccCCcc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AA-RGLDIRGVK 224 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gidi~~v~ 224 (396)
.+.++||.++++.-+..+++.+... ++++..++|+.+.......+. ...+|+|+|+- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999988776 467888999887655443332 24689999962 22 235667777
Q ss_pred EEEEe
Q psy3145 225 TVINY 229 (396)
Q Consensus 225 ~VI~~ 229 (396)
+||.=
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77753
No 106
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.61 E-value=1.6 Score=37.23 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=50.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc-ccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR-GLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gidi~~ 222 (396)
+.++||.++|+.-+..+++.+... +..+..++|+.+..+... .+ .+..+|+|+|+- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999988877654 578889999987654432 22 346789999972 222 245667
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
++++|.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777665
No 107
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.99 E-value=4.5 Score=38.01 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=55.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 222 (396)
+.++||.|+++.-+..++..+... ++++..++|+.+....... +..+..+|+|+|.-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887665 7889999999887665543 445667899999632 23356778
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 153 ~~~vViD 159 (391)
T 1xti_A 153 IKHFILD 159 (391)
T ss_dssp CSEEEEC
T ss_pred cCEEEEe
Confidence 8877753
No 108
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.87 E-value=2.6 Score=36.69 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=48.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc------cccccccCCc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV------AARGLDIRGV 223 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gidi~~v 223 (396)
.+.++||.++|+.-+..+++.+... ++.+..++|+.+...+...+ . ...+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999988774 67888999987655443332 2 24789999962 1234567778
Q ss_pred cEEEEe
Q psy3145 224 KTVINY 229 (396)
Q Consensus 224 ~~VI~~ 229 (396)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 877653
No 109
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=86.95 E-value=2.9 Score=36.74 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc-ccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR-GLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 222 (396)
.+.++||.++|+.-+..+++.++.. +..+..++|+.+... ....+..+..+|+|+|+ .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999998888765 567788888765432 23455567789999995 2333 356677
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 7777653
No 110
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.48 E-value=3.1 Score=36.38 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc--ccccC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR--GLDIR 221 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~--Gidi~ 221 (396)
.+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|+- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999998888765 47889999987765443333 35789999962 112 35566
Q ss_pred CccEEEE
Q psy3145 222 GVKTVIN 228 (396)
Q Consensus 222 ~v~~VI~ 228 (396)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777665
No 111
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.59 E-value=1.2 Score=38.79 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... ++.+..++|+.+..+.... +. ..+|+|+|+-. ....++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999999888877654 6788999998765544322 22 27899999732 23456677
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 156 ~~~iViD 162 (224)
T 1qde_A 156 IKMFILD 162 (224)
T ss_dssp CCEEEEE
T ss_pred CcEEEEc
Confidence 7777753
No 112
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.68 E-value=7.9 Score=34.13 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~v 223 (396)
+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|+-. ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888877654 57788899988765543322 2457899999721 223567778
Q ss_pred cEEEEe
Q psy3145 224 KTVINY 229 (396)
Q Consensus 224 ~~VI~~ 229 (396)
++||.=
T Consensus 176 ~~lViD 181 (253)
T 1wrb_A 176 KYIVLD 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 877753
No 113
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.92 E-value=3.9 Score=35.31 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc--------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc-ccc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL--------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR-GLD 219 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gid 219 (396)
+.++||.++|+.-+..+++.+... ++.+..++|+.+..... +.+ .+..+|+|+|+ .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 568999999999999888877554 67888899986543321 112 23568999996 2222 355
Q ss_pred cCCccEEEE
Q psy3145 220 IRGVKTVIN 228 (396)
Q Consensus 220 i~~v~~VI~ 228 (396)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777665
No 114
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.88 E-value=5.4 Score=38.65 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc-ccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR-GLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gidi~~v 223 (396)
+.++||.++|+.-+..+++.+... ++++..++|+.+...+...+ . ...+|+|+|+- +.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T-RGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h-cCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999998887764 57888999998876554333 2 35789999972 223 3567788
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
+++|.=.
T Consensus 205 ~~lVlDE 211 (434)
T 2db3_A 205 RFVVLDE 211 (434)
T ss_dssp CEEEEET
T ss_pred CeEEEcc
Confidence 8877533
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.64 E-value=9.1 Score=36.24 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=51.3
Q ss_pred CcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc-ccccCCcc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR-GLDIRGVK 224 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gidi~~v~ 224 (396)
.++||.++|+.-+..+++.+.. .++++..++|+.+..+....+ . ...+|+|+|+- +.. .+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999998888765 367889999998876544332 2 34689999972 222 35677788
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 116
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=80.51 E-value=4.7 Score=37.84 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... ++++..++|+.+..+....+. ..+|+|+|.-. ...++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3569999999999999888877653 688999999988776655444 35799999621 22345667
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.=+
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777533
No 117
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.49 E-value=6.1 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cc--ccccccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VA--ARGLDIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~--~~Gidi~~ 222 (396)
+.++||.++|+.-+..+++.++.. +..+..++|+......... +..| .+|+|+|+ .+ ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 568999999999999998888764 5678889998876554433 3334 78999995 12 12467777
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887765
No 118
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=77.71 E-value=2 Score=33.07 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.+.++++||.+-..+...+..|...|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 35789999999999999999999999999999998643
No 119
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.67 E-value=3.3 Score=40.96 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-----ccc-c-ccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-----ARG-L-DIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-i-di~~ 222 (396)
+.++||.++|+.-+...+..+... ++.+..+||+.+...+...+. +..+|+|+|+-. ..| + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777665 899999999986655433222 136799999732 222 3 5667
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 120
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=77.57 E-value=6 Score=41.87 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=45.5
Q ss_pred hhcCCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 150 CRTFKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 150 ~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
....+..++|.|+|+.-|.+.++++.. .|+++.++.|+++..+|.... ..+|+++|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 445567899999999999888777644 489999999999987766543 258999997
No 121
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.50 E-value=2 Score=32.39 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=32.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.++++||.+-..+...+..|...|+++..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 578999999999999999999999999988989854
No 122
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.77 E-value=3.5 Score=45.11 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=56.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CC----ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccccc-cCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GI----KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARGLD-IRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gid-i~~ 222 (396)
.+.++||.++|+.-|..+++.++.. ++ .+..+||+.+..++....+.+++ .+|+|+|+-. ..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3578999999999999888877653 56 88999999999988888888877 8999999821 11111 456
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777665
No 123
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=76.75 E-value=2.5 Score=38.97 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------c-cccccC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------A-RGLDIR 221 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-~Gidi~ 221 (396)
..++||.++|+.-|..++..+... ++.+..++|+...... .....+|+|+|+-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988877654 4677778877543221 13456899999832 1 356778
Q ss_pred CccEEEEe
Q psy3145 222 GVKTVINY 229 (396)
Q Consensus 222 ~v~~VI~~ 229 (396)
+++++|.-
T Consensus 235 ~l~~lVlD 242 (300)
T 3fmo_B 235 KIKVFVLD 242 (300)
T ss_dssp GCSEEEET
T ss_pred hceEEEEe
Confidence 88888753
No 124
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=76.70 E-value=5.5 Score=42.15 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=44.7
Q ss_pred hhcCCCcEEEEeCChHHHHHHHHHHHh----cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 150 CRTFKDHTMIFVPTKREAHEMHILLGL----LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 150 ~~~~~~~~iIF~~t~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
....+.+++|.++|+.-|.+.++.+.. .|+++..+.||++...|.... ..+|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 344567899999999998887776644 489999999999987665443 268999997
No 125
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=76.64 E-value=2.4 Score=31.49 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=31.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999999888889875
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.51 E-value=19 Score=33.82 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc-ccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR-GLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... ++.+..++|+......... ..+..+|+|+|.- +.. ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3568999999999998888877654 6788899998876543322 2356789999962 223 356778
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.=+
T Consensus 164 ~~~vIiDE 171 (400)
T 1s2m_A 164 CSLFIMDE 171 (400)
T ss_dssp CCEEEEES
T ss_pred CCEEEEeC
Confidence 88877643
No 127
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.31 E-value=11 Score=34.64 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... ++.+..++|+.........+. ..+|+|+|.-. ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 4678999999999998888887664 678888999887655444333 46799999631 12255677
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.=+
T Consensus 148 ~~~iIiDE 155 (367)
T 1hv8_A 148 VKYFILDE 155 (367)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 78777533
No 128
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.22 E-value=1.9 Score=32.62 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
.+.++++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999998999999999999999998989854
No 129
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.20 E-value=12 Score=28.75 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=44.5
Q ss_pred EEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 157 ~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
.++|.+.......+...++..|.++..++++.....|.+-++.|....+++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4778888888888999999999999999999999999999999987655543
No 130
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=75.43 E-value=4.7 Score=39.98 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-----ccc-c-ccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-----ARG-L-DIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-i-di~~ 222 (396)
+.++||.++|+.-+...+..+... ++++..+||+.+...+...+. ...+|+|+|+-. ..| + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888877665 899999999986655433222 136799999732 222 3 5677
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.=.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88877643
No 131
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.02 E-value=15 Score=35.01 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc-CC---ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-c-----cccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL-GI---KAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-A-----RGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~-----~Gidi~~ 222 (396)
.+.++||.|+++.-+...++.+... +. .+..+||+....++..... ..+|+|+|.-. . ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999888888765 55 8999999998887665543 35799999632 1 1355677
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 126 ~~~vIiD 132 (494)
T 1wp9_A 126 VSLIVFD 132 (494)
T ss_dssp CSEEEEE
T ss_pred ceEEEEE
Confidence 7877753
No 132
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=74.99 E-value=4.6 Score=31.74 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=31.7
Q ss_pred CcEEEEe-CChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 155 DHTMIFV-PTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 155 ~~~iIF~-~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.++++|| .+-..+...+..|...|+++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57788889999999999999999998754
No 133
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.76 E-value=4.1 Score=35.79 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=49.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----ccc---ccccC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AAR---GLDIR 221 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~---Gidi~ 221 (396)
+.++||.++|+.-+..+++.+... ++.+..++|+..... .......+..+|+|+|+- +.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 458999999999999999888765 677777777532211 112223456789999952 112 46778
Q ss_pred CccEEEEe
Q psy3145 222 GVKTVINY 229 (396)
Q Consensus 222 ~v~~VI~~ 229 (396)
++++||.=
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 88877753
No 134
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=74.61 E-value=8.1 Score=41.15 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=45.9
Q ss_pred HhhcCCCcEEEEeCChHHHHHHHHHHH----hcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 149 VCRTFKDHTMIFVPTKREAHEMHILLG----LLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 149 l~~~~~~~~iIF~~t~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+....+.+++|.++|+.-|.+.++++. ..|+++.++.|+++..+|..... .+|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 444556789999999998887777664 45899999999999877765542 58999997
No 135
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.45 E-value=2.3 Score=32.54 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNL 188 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~ 188 (396)
+.++++||.+-..+...+..|...|+.+..+.||+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 56899999998889999999999999988888885
No 136
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=74.41 E-value=6.2 Score=41.62 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-c-ccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-L-DIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-di~~ 222 (396)
+.++||.++|+.-+...+..+... ++++..+||+.+...+...+. +..+|+|+|+- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 679999999999998887777665 899999999987655433222 24689999963 1222 3 5667
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 137
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.34 E-value=9.6 Score=35.99 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=52.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc-ccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR-GLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... +..+..++|+.+.... .+.+..+..+|+|+|+ .+.. .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4578999999999999888887664 5777888887665433 4556667789999996 2222 355667
Q ss_pred ccEEEE
Q psy3145 223 VKTVIN 228 (396)
Q Consensus 223 v~~VI~ 228 (396)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777765
No 138
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.19 E-value=29 Score=32.58 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----cccc-ccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAAR-GLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gidi~~ 222 (396)
.+.++||.++|+.-+..+++.+... ++.+..++|+.+..+....+. ...+|+|+|+ .+.. .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4579999999999999998887654 578888999988766544433 2357999996 2333 356677
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 180 ~~~vViD 186 (410)
T 2j0s_A 180 IKMLVLD 186 (410)
T ss_dssp CCEEEEE
T ss_pred eeEEEEc
Confidence 8877753
No 139
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=72.51 E-value=7.5 Score=41.55 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=46.7
Q ss_pred HhhcCCCcEEEEeCChHHHHHHHHHHH----hcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc
Q psy3145 149 VCRTFKDHTMIFVPTKREAHEMHILLG----LLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213 (396)
Q Consensus 149 l~~~~~~~~iIF~~t~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 213 (396)
+....+.+++|.++|+.-|.+.++.+. ..|+++..+.|+++..+|.... ..+|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 444556789999999998887777664 4589999999999987776654 2689999973
No 140
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=70.80 E-value=19 Score=32.69 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=51.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-----c-cccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-----A-RGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~-~Gidi~~v 223 (396)
+.++||.++++.-+..+++.+... +..+..+||+.+....... +. ..+|+|+|.-. . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 578999999999999998888754 5789999999887654433 22 36799999632 2 23456677
Q ss_pred cEEEEe
Q psy3145 224 KTVINY 229 (396)
Q Consensus 224 ~~VI~~ 229 (396)
++||.=
T Consensus 131 ~~iViD 136 (337)
T 2z0m_A 131 EIVIID 136 (337)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 777653
No 141
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=69.89 E-value=3.9 Score=31.17 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3568999999998999999999999995 8888898643
No 142
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=66.90 E-value=4.5 Score=32.81 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCcEEEEeCCh--HHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 154 KDHTMIFVPTK--REAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~--~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
+.++++||.+- ..+...+..|...|+++..+.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 56899999997 58889999999999999999998643
No 143
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=66.22 E-value=7.3 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=32.5
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 152 TFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 152 ~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
..+.++++||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34678999999999999999999999986677889865
No 144
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.14 E-value=3.1 Score=32.73 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCcEEEEeCChHH--HHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKRE--AHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~--~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
+.++++||.+-.. +...+..|...|+++..+.||+.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 5689999999776 88999999999999888889864
No 145
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=65.52 E-value=4.4 Score=30.86 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4578999999988899999999999995 8888898654
No 146
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=65.41 E-value=8.2 Score=27.77 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||.+-..+...+..|...|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4678999999988999999999999986 5555 7754
No 147
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=64.54 E-value=4.9 Score=31.81 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3578999999988899999999999995 8889999753
No 148
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=64.21 E-value=5.1 Score=31.95 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4578999999998899999999999996 888999864
No 149
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=64.00 E-value=6.4 Score=40.45 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=12.8
Q ss_pred ceeEEEeccccccccC
Q psy3145 28 GLRVYVETEACPKANL 43 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~ 43 (396)
+.+++|+||||++.+.
T Consensus 192 ~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 192 KVGLVICDEGHRLKNS 207 (644)
T ss_dssp CCCEEEETTGGGCCTT
T ss_pred CccEEEEECceecCCh
Confidence 4678999999988763
No 150
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=63.97 E-value=4.9 Score=32.24 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
.+.+++|||.+-..+...+..|...|+ ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 467899999998889999999999999 58889998643
No 151
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=63.96 E-value=6.4 Score=31.89 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~ 189 (396)
.+.+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 357899999998888899999999999 5888999874
No 152
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=63.89 E-value=6.6 Score=33.30 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCcEEEEeCChHHHHH-HHHHHHhc---CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHE-MHILLGLL---GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~-l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
..++||.|+++.-+.. +.+.+... ++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999998877 55555433 678999998765433221111 1357899986
No 153
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=61.42 E-value=12 Score=38.44 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=50.9
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-c-ccCCc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-L-DIRGV 223 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-di~~v 223 (396)
+++||.++|+.-+...+..+... ++++..++|+.+...+...+. ...+|+|+|+- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888877665 789999999986543332222 14789999972 2223 3 56677
Q ss_pred cEEEEec
Q psy3145 224 KTVINYR 230 (396)
Q Consensus 224 ~~VI~~~ 230 (396)
++||.=.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8777643
No 154
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=61.04 E-value=6.4 Score=31.41 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3578999999998999999999999995 888889864
No 155
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.00 E-value=34 Score=29.90 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.|..+...++... +.+++|+++++.-+..+.+.+...+.. +..++|+.. ...+|+|+|.
T Consensus 120 GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 4544444444333 679999999999999999999888888 888998753 2457888885
No 156
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.29 E-value=17 Score=39.09 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-c-ccCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-L-DIRG 222 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-di~~ 222 (396)
+.++||.++|+.-+...+..+... ++++..+||+.+...+...+. +..+|+|+|+- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 578999999999988887777664 899999999986654332222 13679999963 1222 3 4566
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 372 ~~liViD 378 (936)
T 4a2w_A 372 FTLMIFD 378 (936)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7877753
No 157
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=58.50 E-value=7.9 Score=31.22 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 568999999988999999999999995 888888854
No 158
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=55.95 E-value=9 Score=30.41 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||.+=..+...+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3578999999988888999999999995 888889974
No 159
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=54.23 E-value=30 Score=33.38 Aligned_cols=46 Identities=28% Similarity=0.441 Sum_probs=39.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
+.++||.|+++.-+...+..+...|.. +..+||+.+. ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 679999999999999999999888999 9999998653 357899986
No 160
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.96 E-value=19 Score=39.51 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCccEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVKTV 226 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~~V 226 (396)
.+.++||.++++.-+...+..+......+..++|+.+ .++..+|+|+|+ .+..| ..+.++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3678999999999999999999887668999999876 246688999994 44444 336677877
Q ss_pred EEec
Q psy3145 227 INYR 230 (396)
Q Consensus 227 I~~~ 230 (396)
|.=.
T Consensus 295 VIDE 298 (1108)
T 3l9o_A 295 IFDE 298 (1108)
T ss_dssp EEET
T ss_pred EEhh
Confidence 7533
No 161
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.05 E-value=3.6 Score=42.44 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=47.5
Q ss_pred CcEEEEeCChHHHHHH-HHHHHhcC---CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-c-----------ccc
Q psy3145 155 DHTMIFVPTKREAHEM-HILLGLLG---IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-A-----------RGL 218 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l-~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~-----------~Gi 218 (396)
+++||.++++.-+... +..|...+ +.+..+||+.+..++...+. +..+|+|+|+-. . ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 77776653 89999999987655433332 467899999732 1 234
Q ss_pred ccCCccEEEE
Q psy3145 219 DIRGVKTVIN 228 (396)
Q Consensus 219 di~~v~~VI~ 228 (396)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677887775
No 162
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=52.98 E-value=23 Score=32.05 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCCcEEEEeC---------------------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc
Q psy3145 153 FKDHTMIFVP---------------------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202 (396)
Q Consensus 153 ~~~~~iIF~~---------------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 202 (396)
+.+-+|||.| +...++.|...|+.+|+.|. .+.+++..+-.+.+++|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3467888887 45789999999999999976 6678999999999999965
No 163
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=52.81 E-value=15 Score=33.18 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
..+...+....+.++++||.+-..+...+..|...|+ ++..+.||+..
T Consensus 170 ~~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 170 DYVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp HHHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 3444444445678999999999999999999999999 58889998754
No 164
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=50.19 E-value=31 Score=31.74 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=40.8
Q ss_pred CcEEEEeCC-----------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc
Q psy3145 155 DHTMIFVPT-----------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202 (396)
Q Consensus 155 ~~~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 202 (396)
+-+|||+|. ...++.|...|+.+|+.|. .+.+++..+-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999988 6789999999999999976 6668999999999999964
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=48.02 E-value=67 Score=29.52 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=48.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRG 222 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~ 222 (396)
.+.++||.++++.-+..+++.+... ++.+..++|+.... ......+|+|+|+-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 4568999999999999999888764 46677777664321 123357899999732 33456778
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
+++||.=.
T Consensus 146 ~~~iIiDE 153 (395)
T 3pey_A 146 IKIFVLDE 153 (395)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88877543
No 166
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=46.61 E-value=9 Score=34.87 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=43.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
..+-+|||.|+...++.|...|+.+|+.|. .|.+++..+-...+++|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999999999977 56689999999999999753
No 167
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=45.72 E-value=14 Score=30.20 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCcEEEEeCCh---------HHHHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTK---------REAHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~---------~~~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
..++|+||.+- ..+..++..|...|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 56899999987 3577889999999999999999853
No 168
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=45.56 E-value=15 Score=36.82 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=50.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc--------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-----cc--ccc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL--------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-----AR--GLD 219 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~--Gid 219 (396)
.++||.++|+.-+..++..+... .+.+..++|+.+.. ..+..+..+..+|+|+|+-. .. ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999988887653 35677778876654 33445555667899999732 12 345
Q ss_pred cCCccEEEE
Q psy3145 220 IRGVKTVIN 228 (396)
Q Consensus 220 i~~v~~VI~ 228 (396)
+..+++||.
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 677888775
No 169
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.69 E-value=18 Score=35.92 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=50.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc--------CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-----cc--ccc
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL--------GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-----AR--GLD 219 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~--Gid 219 (396)
.++||.++|+.-+..++..+... +..+..++|+.+... .++.+..+..+|+|+|+-. .. ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 48999999999999998888652 355777788766543 3445555677999999732 12 235
Q ss_pred cCCccEEEE
Q psy3145 220 IRGVKTVIN 228 (396)
Q Consensus 220 i~~v~~VI~ 228 (396)
+..+++||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 677887775
No 170
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=44.16 E-value=16 Score=37.12 Aligned_cols=20 Identities=5% Similarity=-0.183 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCCCcEEEEe
Q psy3145 91 NKDTEIVVAYCWSKGTFQSN 110 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~S 110 (396)
+.+..++..+|.+.|++++.
T Consensus 277 ~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 277 PMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp HHHHHHHHTCCTTCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEc
Confidence 45678888888888988874
No 171
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=43.63 E-value=32 Score=30.85 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHH-hcCC-ceEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLG-LLGI-KAGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~-~~~~-~~~~lhg~~~ 189 (396)
.+.++|+||.+-..+...+..|. ..|+ ++..+.||+.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 46789999999888888999998 8999 5888999864
No 172
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=43.16 E-value=21 Score=32.00 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCHH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQP 191 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~~ 191 (396)
.+.++++||.+-..+...+..|...|+ ++..+.||+..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 357899999998888899999999999 488999998653
No 173
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=42.56 E-value=27 Score=32.69 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=47.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------c-cccccC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------A-RGLDIR 221 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-~Gidi~ 221 (396)
..++||.++|+.-+..+++.+... +..+...+|+..... ......+|+|+|+-. . ..+++.
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcChh
Confidence 458999999999999998877654 466777777644321 123456899999732 1 245667
Q ss_pred CccEEEEec
Q psy3145 222 GVKTVINYR 230 (396)
Q Consensus 222 ~v~~VI~~~ 230 (396)
++++||.=.
T Consensus 168 ~~~~iViDE 176 (412)
T 3fht_A 168 KIKVFVLDE 176 (412)
T ss_dssp GCCEEEEET
T ss_pred hCcEEEEeC
Confidence 788777533
No 174
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=41.87 E-value=35 Score=35.14 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=50.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccccc-cCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARGLD-IRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gid-i~~v~ 224 (396)
+.++++.++++.-+...++.++. .|+++..++|+....++ ..+..+|+|+|+ .+..+.. +.+++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 67999999999999999988743 47899999998765432 124778999997 2333333 66788
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 141 ~vIi 144 (702)
T 2p6r_A 141 CLVV 144 (702)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 175
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=41.67 E-value=74 Score=30.93 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcC----CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc-ccc--cccCCccE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLG----IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA-ARG--LDIRGVKT 225 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~G--idi~~v~~ 225 (396)
.++++||.++++.-+...++.+...+ ..+..++|+.+..++ ..+..+|+|+|.-. ... ..+.++++
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 34599999999999999999887652 468889998776554 35778999999732 221 34556777
Q ss_pred EEEec
Q psy3145 226 VINYR 230 (396)
Q Consensus 226 VI~~~ 230 (396)
||.=.
T Consensus 229 iIiDE 233 (510)
T 2oca_A 229 MMNDE 233 (510)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 66533
No 176
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=41.36 E-value=53 Score=27.21 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 164 KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 164 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
...++.|...|..+|+.|. .|.+++..+-.+.++.|...
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 5788999999999999985 66788999989999988643
No 177
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=40.58 E-value=69 Score=26.90 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=39.0
Q ss_pred CcEEEEeCC-----------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc
Q psy3145 155 DHTMIFVPT-----------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202 (396)
Q Consensus 155 ~~~iIF~~t-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 202 (396)
+.+||+.|. ...++.+...|+..|+.|. ++.+++..+-.+.++.|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 457887765 3789999999999999986 5677899999999999864
No 178
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.16 E-value=34 Score=35.25 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=49.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHH---hcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccccc-cCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLG---LLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARGLD-IRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~---~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gid-i~~v~ 224 (396)
+.++++.++++.-+...+..++ ..|+++..++|+....++ .+ +..+|+|+|+ .+..+.. +.+++
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 147 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEVN 147 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhccC
Confidence 5799999999999998888874 348899999998766543 12 3678999997 2222333 56778
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 148 ~vIi 151 (715)
T 2va8_A 148 YFVL 151 (715)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 179
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=38.65 E-value=23 Score=30.71 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
.+.++++||++-..+...+..|...|.++..+.||+..
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 46789999999999999999999999778888898643
No 180
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=37.68 E-value=50 Score=26.79 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=39.0
Q ss_pred CCcEEEEeC--------------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 154 KDHTMIFVP--------------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 154 ~~~~iIF~~--------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
.+.+|||.| |...++.+...|..+|+.|. .|.+++..+-.+.++.|...
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 356777766 45578999999999999976 56678999988999998653
No 181
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.54 E-value=1.8e+02 Score=24.41 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=74.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec----ccccccccCCccEEEEe
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD----VAARGLDIRGVKTVINY 229 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~----~~~~Gidi~~v~~VI~~ 229 (396)
+.++++.++.....+.+.+...+.+..+..+.|++... ....+.+ ....+++||-- .+..-+++| ||
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV-- 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SI-- 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EE--
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EE--
Confidence 35778888888877766666666677787788876443 3334444 56678998854 233345555 22
Q ss_pred cCCCChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHcCCCCccccCCC
Q psy3145 230 RMPHSLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNAKNPVKHRIIPP 284 (396)
Q Consensus 230 ~~p~s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~~~~~~~~~~~~ 284 (396)
++|.|.-++++-+-++.+.+. -.+++-+ +.-...++.+...++.++....+.+
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~-kIavvg~-~~~~~~~~~~~~ll~~~i~~~~~~~ 127 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGN-ELALIAY-KHSIVDKHEIEAMLGVKIKEFLFSS 127 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCS-EEEEEEE-SSCSSCHHHHHHHHTCEEEEEEECS
T ss_pred EEcCCHhHHHHHHHHHHhhCC-cEEEEeC-cchhhHHHHHHHHhCCceEEEEeCC
Confidence 357778888888888876653 2333333 2223335667777777776655544
No 182
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=37.14 E-value=24 Score=27.11 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=29.0
Q ss_pred cEEEEeCChHHHHHHHHHHHhc------CC-ceEEeeCCCCH
Q psy3145 156 HTMIFVPTKREAHEMHILLGLL------GI-KAGELHGNLTQ 190 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~------~~-~~~~lhg~~~~ 190 (396)
++++||.+-..+...+..|... |+ ++..+.||+..
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 8999999988888888999888 34 68888898654
No 183
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=36.68 E-value=68 Score=27.04 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCcEEEEeCCh--------------HHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 154 KDHTMIFVPTK--------------REAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 154 ~~~~iIF~~t~--------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
.+.+|||.+.. ..++.|...|..+|+.|.. |-+++..+-.+.+++|...
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHhhh
Confidence 46789988753 6899999999999999874 5579999999999988653
No 184
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=36.49 E-value=65 Score=29.13 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCcEEEEeCC--------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 154 KDHTMIFVPT--------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 154 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
.+-+|||.|. ...++.|...|+.+|+.|. .+.+++..+-.+.+++|...
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 4668998885 3789999999999999977 56689999999999988653
No 185
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=35.86 E-value=1.4e+02 Score=22.49 Aligned_cols=55 Identities=15% Similarity=0.011 Sum_probs=37.0
Q ss_pred CCcEEEEe------CChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 154 KDHTMIFV------PTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 154 ~~~~iIF~------~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
..+++||. ++...|..+..+|...|+....+.=...+..+....+.-....+..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i 75 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL 75 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence 56899999 46788999999999999887776544455555544443222334433
No 186
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=35.83 E-value=71 Score=26.49 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCcEEEEeCC--------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhc
Q psy3145 154 KDHTMIFVPT--------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202 (396)
Q Consensus 154 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 202 (396)
.+.+|||.|. ...++.|...|..+|+.|. .|.+++..+-.+.++.|..
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhh
Confidence 4678888765 3489999999999999985 6678999999999999876
No 187
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=35.33 E-value=1.2e+02 Score=26.94 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHH-HHHHHhh--cCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL-ESLRKFK--DEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~-~~~~~f~--~g~~~vLvaT~ 212 (396)
+.++++.-.+.+.++.+++.+...|.++..+..+++..+-. ..++... -|.+++||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45788888888889999999999999999999998765532 2222221 27899999754
No 188
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=34.61 E-value=1.1e+02 Score=27.40 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 163 TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 163 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
+...++.|.+.|+..|+.|. .+.+++..+-.+.+++|...
T Consensus 54 ~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 54 TNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 37789999999999999976 66689999999999999753
No 189
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=33.72 E-value=1e+02 Score=27.17 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=39.2
Q ss_pred CcEEEEeC--------------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 155 DHTMIFVP--------------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 155 ~~~iIF~~--------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
+-+||+.| +...++.|.+.|+..|+.|. .+.+++..+-.+.+++|...
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 45677776 34589999999999999976 66789999999999999754
No 190
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=33.49 E-value=27 Score=31.09 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=31.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4678999999988888999999999995 888888853
No 191
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=33.46 E-value=1.5e+02 Score=24.20 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCC
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMP 232 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p 232 (396)
.+.+.|.|.+...+..+...|...|+.+..+.++-. .+ .-.|.|.|--.+.|+.+ +.||.++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcCC---CEEEEecCC
Confidence 567899999999999999999999988877765421 12 23689999999999875 667776643
No 192
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=33.16 E-value=2.8e+02 Score=28.26 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcC-C-ceEEee--------------------CCC--C---HH
Q psy3145 139 LDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLG-I-KAGELH--------------------GNL--T---QP 191 (396)
Q Consensus 139 ~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~-~-~~~~lh--------------------g~~--~---~~ 191 (396)
..|.-++..++... +.++||.+++...|..++..|+... - .|..+- ... + ..
T Consensus 39 s~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~ 117 (664)
T 1c4o_A 39 TGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIER 117 (664)
T ss_dssp SCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHH
T ss_pred cHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHH
Confidence 35666666666443 4589999999999999999998762 2 233322 222 2 45
Q ss_pred HHHHHHHHhhcCCceEEEeeccccccc
Q psy3145 192 SRLESLRKFKDEETDVLIATDVAARGL 218 (396)
Q Consensus 192 ~r~~~~~~f~~g~~~vLvaT~~~~~Gi 218 (396)
.|..++..+..++-.|+|+|-.+-.|+
T Consensus 118 ~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 118 LRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 688889888777666777775444553
No 193
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=33.02 E-value=39 Score=30.19 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChHH-HHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKRE-AHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~-~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
.+.++||||.+-.. +..++..|...|+ ++..+.||+..
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 46789999998665 8888999999999 58889998643
No 194
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=32.57 E-value=45 Score=34.40 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=50.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh---cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccccc-cCCcc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL---LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARGLD-IRGVK 224 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~Gid-i~~v~ 224 (396)
+.++++.++++.-+..++..++. .|+++..++|+.+...+. .+..+|+|+|+- +..+.. +.+++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 57999999999999999998853 488999999987665431 246789999972 222222 56777
Q ss_pred EEEEec
Q psy3145 225 TVINYR 230 (396)
Q Consensus 225 ~VI~~~ 230 (396)
+||.=.
T Consensus 141 ~vIiDE 146 (720)
T 2zj8_A 141 ILVADE 146 (720)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 777533
No 195
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.24 E-value=1.5e+02 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=37.7
Q ss_pred CCcEEEEeC------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 154 KDHTMIFVP------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 154 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
..+++||+. +...|..+..+|...++....+.=...+..+....+.+....+..+
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 357999984 5678999999999999887777655556555555555443344444
No 196
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=32.10 E-value=1.1e+02 Score=29.52 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=45.4
Q ss_pred CcEEEEeCChHHHHHHHHHHHhc-----CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccc-------cccccCC
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLL-----GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAA-------RGLDIRG 222 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-------~Gidi~~ 222 (396)
.++||.++|+.-+..++..+... ++.+....|+.... .......+|+|+|+-.- ..+++.+
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 38999999999999987776553 45666666653321 11133457999997322 3567788
Q ss_pred ccEEEEe
Q psy3145 223 VKTVINY 229 (396)
Q Consensus 223 v~~VI~~ 229 (396)
+++||.=
T Consensus 236 ~~~iViD 242 (479)
T 3fmp_B 236 IKVFVLD 242 (479)
T ss_dssp CCEEEEC
T ss_pred CCEEEEE
Confidence 8887753
No 197
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.73 E-value=52 Score=35.69 Aligned_cols=66 Identities=23% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec-----ccccc-cccCCccEE
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATD-----VAARG-LDIRGVKTV 226 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-idi~~v~~V 226 (396)
.+.++|+.++++.-+...+..|....-.+..++|+.+.. ...+|+|+|+ .+.+| ..+.++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 357999999999999999998877655889999987532 3568999997 23333 455677777
Q ss_pred EEe
Q psy3145 227 INY 229 (396)
Q Consensus 227 I~~ 229 (396)
|.=
T Consensus 197 ViD 199 (1010)
T 2xgj_A 197 IFD 199 (1010)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
No 198
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=31.30 E-value=25 Score=27.54 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCcEEEEeCChHH---------HHHHHHHHHhcCCceEEeeCCCC
Q psy3145 154 KDHTMIFVPTKRE---------AHEMHILLGLLGIKAGELHGNLT 189 (396)
Q Consensus 154 ~~~~iIF~~t~~~---------~~~l~~~L~~~~~~~~~lhg~~~ 189 (396)
..++++||++-.. +..++..|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4689999988654 35677888889999999999853
No 199
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=31.11 E-value=55 Score=31.36 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
.+.++|+||.+-..+...+..|...|+ ++..|.|+++.
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 457899999998888899999999998 58889998654
No 200
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=30.94 E-value=65 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHh-cCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGL-LGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~-~~~~-~~~lhg~~~ 189 (396)
.+.++|+||.+-..+...+..|.. .|+. +..+.||+.
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 467899999998888888888985 8985 888989853
No 201
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=30.74 E-value=83 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=40.5
Q ss_pred CCcEEEEeCC-------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 154 KDHTMIFVPT-------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 154 ~~~~iIF~~t-------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
.+-+|||.|. ...++.|...|+.+|+.|. ++.+++..+-.+.+++|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 4567777764 7789999999999999986 56689999999999999754
No 202
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=30.67 E-value=48 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++|+||.+-..+...+..|...|+. +..+.||+..
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 277 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFE 277 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 4678999999988888888889999995 8889998654
No 203
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.38 E-value=1.7e+02 Score=21.78 Aligned_cols=55 Identities=9% Similarity=-0.026 Sum_probs=37.2
Q ss_pred CCcEEEEeC------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 154 KDHTMIFVP------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 154 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
..+++||.. +...|..+..+|...|+....+.=...+..+....+......+..+
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 468999998 4888999999999999887766544445555544443333334433
No 204
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=30.32 E-value=80 Score=27.95 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC----ceEEeeCCCCHHHHHHHHHHhhcCCceEEEeec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGI----KAGELHGNLTQPSRLESLRKFKDEETDVLIATD 212 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 212 (396)
.+++||.++++.-++...+.+...+. .+..++|+..... -..+..+|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 45899999999999999888877643 5667777654322 1225567999987
No 205
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=30.25 E-value=74 Score=34.42 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhc--CCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc-----cccc-cccCCcc
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLL--GIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV-----AARG-LDIRGVK 224 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-idi~~v~ 224 (396)
.+.++||.++++.-+...+..+... +..+..+||+.+. ++..+++|+|+- +..+ ..+.+++
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 149 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVE 149 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCC
Confidence 4578999999999999999999875 6799999998752 356788998862 1122 2345666
Q ss_pred EEEE
Q psy3145 225 TVIN 228 (396)
Q Consensus 225 ~VI~ 228 (396)
+||.
T Consensus 150 lvVi 153 (997)
T 4a4z_A 150 FVIF 153 (997)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 206
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=30.18 E-value=95 Score=27.65 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC---CceEEEeecccccccc
Q psy3145 163 TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE---ETDVLIATDVAARGLD 219 (396)
Q Consensus 163 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~Gid 219 (396)
+...++.|...|+.+|+.|. .+.+++..+-.+.+++|... ..+.+|+. .++-|..
T Consensus 42 ~~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~-~lsHG~~ 99 (259)
T 3sir_A 42 TNVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQNHSDSDCILVA-ILSHGEM 99 (259)
T ss_dssp -CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTSCCTTEEEEEEE-EEECTTC
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-EecCCCC
Confidence 34689999999999999976 66689999999999999753 23333332 3455553
No 207
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=29.47 E-value=1.3e+02 Score=27.03 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC---CceEEEeecccccccccCCccEEEEecCCCChhHHH
Q psy3145 163 TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE---ETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYI 239 (396)
Q Consensus 163 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~s~~~y~ 239 (396)
+...++.|...|+.+|+.|. .+.+++..+-.+.+++|... ..+.+|+. .++-|.. ..|+-.|-+-+.....
T Consensus 67 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~-ilSHG~~----g~i~g~D~~v~l~~I~ 140 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGEE----GIIFGTNGPVDLKKIT 140 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTSCCTTEEEEEEE-EESCEET----TEEEETTEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhhcccCCCEEEEE-EEcCCCC----CEEEEeCCcEeHHHHH
Confidence 44589999999999999976 67779999999999999763 23333221 2344543 3454444444555555
Q ss_pred HHH
Q psy3145 240 HRV 242 (396)
Q Consensus 240 qr~ 242 (396)
+..
T Consensus 141 ~~f 143 (277)
T 4ehd_A 141 NFF 143 (277)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 208
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=29.34 E-value=84 Score=28.97 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=57.0
Q ss_pred CCcEEEEeCC------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC----CceEEEeecccccc
Q psy3145 154 KDHTMIFVPT------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE----ETDVLIATDVAARG 217 (396)
Q Consensus 154 ~~~~iIF~~t------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~G 217 (396)
.+-+|||.|. ...++.|...|+.+|+.|. ++.+++..+-.+.+++|... ..+.+|+. +++-|
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~-ilSHG 138 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTSSSYVQNTECFVMV-LMTHG 138 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHTSHHHHTCSCEEEE-EESCE
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHHHhhcCCCCEEEEE-EccCC
Confidence 4567777765 2789999999999999976 67789999999999999642 22222221 24456
Q ss_pred cccCCccEEEEecCC-CChhHHHHHH
Q psy3145 218 LDIRGVKTVINYRMP-HSLEHYIHRV 242 (396)
Q Consensus 218 idi~~v~~VI~~~~p-~s~~~y~qr~ 242 (396)
....+-+.|+-.|.. -++...++..
T Consensus 139 ~~~~g~g~i~g~D~~~v~l~~I~~~f 164 (316)
T 2fp3_A 139 NSVEGKEKVEFRDGSVVDMQKIKDHF 164 (316)
T ss_dssp ECCTTCCEEECTTSCEEEHHHHHHTT
T ss_pred CccCCCCEEEeecCcEEeHHHHHHHh
Confidence 655444555544543 4455555444
No 209
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=29.22 E-value=1.7e+02 Score=23.08 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCcEEEEeC------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 143 ALLAALVCRTFKDHTMIFVP------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
..+..++.. .+++||+. +...|..+..+|...|+....+.=...+..+..+.+......+..+
T Consensus 26 ~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 26 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp HHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 344444433 57999987 5778999999999999887777655556555555444333344433
No 210
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=29.20 E-value=74 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCCcEEEEeCCh-HHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTK-REAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~-~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
.+.+++|||.+- ..+..++..|...|+ ++..+.||+..
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 115 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKK 115 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 457899999884 357788889999999 68889998543
No 211
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=29.17 E-value=66 Score=28.39 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKR-EAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.+++|||.+-. .+..++..|...|+. +..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4678999998865 788889999999994 888999854
No 212
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=28.69 E-value=82 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=34.2
Q ss_pred eCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHh
Q psy3145 161 VPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKF 200 (396)
Q Consensus 161 ~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 200 (396)
|.+++.|..+..+|...|+....+.=++++..|.+..++.
T Consensus 13 c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 3456778899999999999999888888999999888887
No 213
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=27.82 E-value=77 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCcEEE-Ee-CChHHHH----HHHHHHHhcCC---ceEEeeCCCCHH
Q psy3145 154 KDHTMI-FV-PTKREAH----EMHILLGLLGI---KAGELHGNLTQP 191 (396)
Q Consensus 154 ~~~~iI-F~-~t~~~~~----~l~~~L~~~~~---~~~~lhg~~~~~ 191 (396)
+.++|| +| .+-..+. .++..|...|+ ++..+.||+..-
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W 113 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAF 113 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH
Confidence 344444 59 4533333 44477888896 688899987543
No 214
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=27.40 E-value=1.9e+02 Score=21.37 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=37.4
Q ss_pred CCcEEEEeC------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEE
Q psy3145 154 KDHTMIFVP------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVL 208 (396)
Q Consensus 154 ~~~~iIF~~------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 208 (396)
..+++||+. +...|..+..+|...|+....+.=...+..+....+......+.++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 457899987 4557889999999999988877766666555555544433334433
No 215
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=27.17 E-value=1e+02 Score=31.70 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=48.4
Q ss_pred CCcEEEEeCChHHHHHHHHHHHh-cCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecc--c-ccccccCCccEEEEe
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGL-LGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV--A-ARGLDIRGVKTVINY 229 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~--~-~~Gidi~~v~~VI~~ 229 (396)
+.+++|.++|+..|..+++.+.. .+..+...+|+.. ..+..+|+|+|+- + ...++..++++||.=
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlD 325 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIICD 325 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEET
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEEc
Confidence 45899999999999999887743 4777777888743 4567789999983 2 234666678877764
Q ss_pred c
Q psy3145 230 R 230 (396)
Q Consensus 230 ~ 230 (396)
.
T Consensus 326 E 326 (666)
T 3o8b_A 326 E 326 (666)
T ss_dssp T
T ss_pred c
Confidence 3
No 216
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=26.81 E-value=75 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHhcCCc-eEEeeCCCC
Q psy3145 153 FKDHTMIFVPTKR-EAHEMHILLGLLGIK-AGELHGNLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~lhg~~~ 189 (396)
.+.++||||.+-. .+..++..|+..|+. +..+.||+.
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 4678999999866 788899999999995 888999854
No 217
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=25.87 E-value=46 Score=33.00 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
+.++++||.+-..+...+..|...|+++..+.||+..
T Consensus 524 ~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 524 DKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRT 560 (565)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred cCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHHH
Confidence 5689999999999999999999999999999998653
No 218
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=24.50 E-value=67 Score=28.60 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCCcEEEEeCChH-HHHHHHHHHHhcCCc-eEEeeCCCCH
Q psy3145 153 FKDHTMIFVPTKR-EAHEMHILLGLLGIK-AGELHGNLTQ 190 (396)
Q Consensus 153 ~~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 190 (396)
.+.++++||.+-. .+...+..|...|+. +..+.||+..
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 117 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQK 117 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4678999998866 678888899999994 8889998643
No 219
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=24.08 E-value=5e+02 Score=25.20 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc-CCceEEeeC-------CCC-----HHHHHHHHHHhhcC
Q psy3145 137 THLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL-GIKAGELHG-------NLT-----QPSRLESLRKFKDE 203 (396)
Q Consensus 137 ~~~~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~~~~~lhg-------~~~-----~~~r~~~~~~f~~g 203 (396)
....|.-++..+... .++++||.|.+...|..++..|+.. +-.|..+=+ ..+ ..+|..++.++..+
T Consensus 23 ~gs~ka~~~a~l~~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~ 101 (483)
T 3hjh_A 23 TGAACATLVAEIAER-HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 (483)
T ss_dssp CTTHHHHHHHHHHHH-SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGC
T ss_pred CchHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhC
Confidence 445666666776644 3568999999999999999999865 323333222 111 14588889998888
Q ss_pred CceEEEeecccccccccC-----CccEEEEecCCCChhHHHHHHhhcc
Q psy3145 204 ETDVLIATDVAARGLDIR-----GVKTVINYRMPHSLEHYIHRVGRTA 246 (396)
Q Consensus 204 ~~~vLvaT~~~~~Gidi~-----~v~~VI~~~~p~s~~~y~qr~GRag 246 (396)
+..|+|+|-.+-.+.=.| .-...+..+...+...+.++.-..|
T Consensus 102 ~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~G 149 (483)
T 3hjh_A 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 (483)
T ss_dssp CSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHTT
T ss_pred CCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHcC
Confidence 888888876544443233 2345666777777777777754444
No 220
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=23.82 E-value=1.3e+02 Score=29.39 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=41.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC----CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeeccc------ccccccCCc
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG----IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVA------ARGLDIRGV 223 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gidi~~v 223 (396)
+.++||.++++.-+..+++.+...+ ..+....++.... -.....+|+|+|.-. ...+++.++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 4589999999999999999887753 3333333322111 112357899999632 224567788
Q ss_pred cEEEE
Q psy3145 224 KTVIN 228 (396)
Q Consensus 224 ~~VI~ 228 (396)
++||.
T Consensus 261 ~lIIi 265 (508)
T 3fho_A 261 KVFVL 265 (508)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 221
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=23.74 E-value=69 Score=27.55 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=28.9
Q ss_pred CCcEEEEeCChH-HHHHHHHHHHhcCCc-eEEeeCC
Q psy3145 154 KDHTMIFVPTKR-EAHEMHILLGLLGIK-AGELHGN 187 (396)
Q Consensus 154 ~~~~iIF~~t~~-~~~~l~~~L~~~~~~-~~~lhg~ 187 (396)
+.+++|||.+-. .+..++..|. .|+. +..+.||
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 678999999877 8888999999 9995 8889988
No 222
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.46 E-value=1.5e+02 Score=21.03 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=21.5
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCceEEee
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELH 185 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lh 185 (396)
.+++|.-+.....+.+...|...|+.+....
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~ 32 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLV 32 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEec
Confidence 3567777777777778888877777665433
No 223
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=23.35 E-value=2.5e+02 Score=21.40 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=32.7
Q ss_pred CcEEEEeC------ChHHHHHHHHHHHhcCCc-eEEeeCCCCHHHHHHHHH
Q psy3145 155 DHTMIFVP------TKREAHEMHILLGLLGIK-AGELHGNLTQPSRLESLR 198 (396)
Q Consensus 155 ~~~iIF~~------t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~ 198 (396)
.+++||.. +..-|..+..+|...|+. ...+.=...++.+..+.+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 57999998 488899999999999985 666654555555554443
No 224
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=23.12 E-value=50 Score=28.28 Aligned_cols=32 Identities=6% Similarity=-0.105 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCChhhhccCC
Q psy3145 91 NKDTEIVVAYCWSKGTFQSNASMTSFLFLLRP 122 (396)
Q Consensus 91 ~~i~~il~~~~~~~q~ll~SAT~~~~~~~l~~ 122 (396)
+++.+++...|...-+++.+--.|+.+..+.|
T Consensus 141 ~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 141 EEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred HHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 45677788888888888888888888844443
No 225
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=23.03 E-value=66 Score=31.98 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeC-CCC
Q psy3145 153 FKDHTMIFVPTKREAHEMHILLGLLGIKAGELHG-NLT 189 (396)
Q Consensus 153 ~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg-~~~ 189 (396)
.+.++++||.+-..+...+..|...|+++..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3578999999988888888999999999999999 864
No 226
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.34 E-value=2.6e+02 Score=21.29 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCcEEEEeCC--hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceE
Q psy3145 143 ALLAALVCRTFKDHTMIFVPT--KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDV 207 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t--~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 207 (396)
.-+..+-.+.+.-.+++.+.| +.-...+.+.-++.|..+..++..-....|.++...|++..+++
T Consensus 66 enireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdv 132 (162)
T 2l82_A 66 ENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDV 132 (162)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCcee
Confidence 334555555555455554444 33344444555678999999999999999999999999765443
No 227
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=22.13 E-value=2.8e+02 Score=24.20 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=44.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCcc-EEEEec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG--IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVK-TVINYR 230 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~-~VI~~~ 230 (396)
++.+.|+++|...+++....|...+ -++.++ ..+.++.++...+..+ .|.+. +.|+++
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~----------------~P~l~~~~i~l~ 86 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH----------------CTTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc----------------CCceEEEEEEcC
Confidence 4689999999999999999998776 345555 4566777777766543 35555 556666
Q ss_pred CCCCh
Q psy3145 231 MPHSL 235 (396)
Q Consensus 231 ~p~s~ 235 (396)
.|..|
T Consensus 87 ~P~~P 91 (227)
T 3gr1_A 87 EPRKP 91 (227)
T ss_dssp STTSC
T ss_pred CCCCC
Confidence 66543
No 228
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.01 E-value=2.7e+02 Score=21.26 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=52.1
Q ss_pred CcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCccEEEEecCCC-
Q psy3145 155 DHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPH- 233 (396)
Q Consensus 155 ~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~~VI~~~~p~- 233 (396)
.+++|.-........+...|...|+.+....++ .+.++.+.....+++| +++++|.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~~~~dlii-----------------ld~~l~~~ 60 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASA------TEALAGLSADFAGIVI-----------------SDIRMPGM 60 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCH------HHHHHTCCTTCCSEEE-----------------EESCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCH------HHHHHHHHhCCCCEEE-----------------EeCCCCCC
Confidence 467888888888888889998888876644331 3344545444433333 3344443
Q ss_pred ChhHHHHHHhhcccCCCCceEEEEEcCccHHHHHHHHHHc
Q psy3145 234 SLEHYIHRVGRTARAGKGGVSVSMAGEVDRKLVKQVIKNA 273 (396)
Q Consensus 234 s~~~y~qr~GRagR~g~~g~~i~l~~~~e~~~~~~i~~~~ 273 (396)
+....++.+-+. +....++++....+........+..
T Consensus 61 ~g~~~~~~l~~~---~~~~pii~ls~~~~~~~~~~~~~~g 97 (155)
T 1qkk_A 61 DGLALFRKILAL---DPDLPMILVTGHGDIPMAVQAIQDG 97 (155)
T ss_dssp CHHHHHHHHHHH---CTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh---CCCCCEEEEECCCChHHHHHHHhcC
Confidence 344555555332 2234455555555555555554443
No 229
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=22.01 E-value=59 Score=32.47 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=32.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 190 (396)
+.++++||.+-..+...+..|+..|+.+..+.||+..
T Consensus 541 ~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~ 577 (588)
T 3ics_A 541 DKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKL 577 (588)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHH
Confidence 5689999999999999999999999998888898654
No 230
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=21.83 E-value=1.1e+02 Score=27.44 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=39.9
Q ss_pred CCcEEEEeCC--------------hHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 154 KDHTMIFVPT--------------KREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 154 ~~~~iIF~~t--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
.+-+|||.|. ...++.|.+.|+.+|+.|. +|.+++..+-.+.+++|...
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHHh
Confidence 4567888765 3589999999999999976 66789999999999999643
No 231
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=21.69 E-value=64 Score=31.75 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCC
Q psy3145 143 ALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRG 222 (396)
Q Consensus 143 ~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 222 (396)
..|...++. .+.+++|.|.|...++++.+.|.+.|+.+....+. ..+..|. +.|+...+..|.-+|+
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g~--v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDRG--RYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTTC--EEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCCc--EEEEEcccccCcccCC
Confidence 445554432 25699999999999999999999999876544321 1233444 5566667899999999
Q ss_pred ccEEEEec
Q psy3145 223 VKTVINYR 230 (396)
Q Consensus 223 v~~VI~~~ 230 (396)
.++++..+
T Consensus 439 ~klaVITE 446 (483)
T 3hjh_A 439 RNLALICE 446 (483)
T ss_dssp TTEEEEEH
T ss_pred CCEEEEEc
Confidence 88888754
No 232
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=21.67 E-value=53 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcCC-ceEEeeCCCCH
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLGI-KAGELHGNLTQ 190 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 190 (396)
+.++++||.+-..+...+..|...|+ ++..|.|++..
T Consensus 254 ~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 254 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp TSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 57899999998777788888999998 57888888654
No 233
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=21.47 E-value=1.1e+02 Score=25.44 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=38.1
Q ss_pred CcEEEEeC--------------ChHHHHHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhhcC
Q psy3145 155 DHTMIFVP--------------TKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDE 203 (396)
Q Consensus 155 ~~~iIF~~--------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 203 (396)
+.+|||.| |...++.|...|..+|+.|. .|.+++..+-.+.++.|...
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~-v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 45777765 34678999999999999986 55678998888888888654
No 234
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=21.06 E-value=26 Score=35.70 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=12.4
Q ss_pred ceeEEEeccccccccC
Q psy3145 28 GLRVYVETEACPKANL 43 (396)
Q Consensus 28 ~l~~lViDEAh~~~~~ 43 (396)
.-.++||||||.+-+.
T Consensus 204 ~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 204 NQIVIILDEAHNLPDI 219 (620)
T ss_dssp GGEEEEETTGGGHHHH
T ss_pred CCeEEEEECCCchHHH
Confidence 3468999999997653
No 235
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=21.02 E-value=2.8e+02 Score=23.60 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=43.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHhcC--CceEEeeCCCCHHHHHHHHHHhhcCCceEEEeecccccccccCCcc-EEEEec
Q psy3145 154 KDHTMIFVPTKREAHEMHILLGLLG--IKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAARGLDIRGVK-TVINYR 230 (396)
Q Consensus 154 ~~~~iIF~~t~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~v~-~VI~~~ 230 (396)
++.+.|++++...+++....|...+ -++..+- .+.++.++...+..+ .|.+. +-|+++
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~----------------~P~l~~~~i~l~ 86 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY----------------YPQLAYYRIHFD 86 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH----------------STTCCEEEEECS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc----------------CCceeEEEEecC
Confidence 5689999999999999999887776 3444443 556666666666543 35555 556666
Q ss_pred CCCCh
Q psy3145 231 MPHSL 235 (396)
Q Consensus 231 ~p~s~ 235 (396)
.|.+|
T Consensus 87 ~P~~P 91 (197)
T 3gr0_A 87 EPRKP 91 (197)
T ss_dssp STTSC
T ss_pred CCCCC
Confidence 66544
No 236
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.73 E-value=34 Score=29.25 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=11.1
Q ss_pred eeEEEeccccccc
Q psy3145 29 LRVYVETEACPKA 41 (396)
Q Consensus 29 l~~lViDEAh~~~ 41 (396)
-.++||||||.+.
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 5689999999874
No 237
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=20.60 E-value=4.7e+02 Score=26.50 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHhc-CC-ceEEee--------------------CCC--C---HHH
Q psy3145 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLL-GI-KAGELH--------------------GNL--T---QPS 192 (396)
Q Consensus 140 ~k~~~l~~ll~~~~~~~~iIF~~t~~~~~~l~~~L~~~-~~-~~~~lh--------------------g~~--~---~~~ 192 (396)
.|.-++..++... +.++||.+++...|..++..|+.. +- .|..+- ... + ...
T Consensus 44 ~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~ 122 (661)
T 2d7d_A 44 GKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKL 122 (661)
T ss_dssp CHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHHHH
Confidence 4666666666443 458999999999999999999876 22 233332 111 2 457
Q ss_pred HHHHHHHhhcCCceEEEeecccccccccC----CccEEEEecCCCChhHHHHHHhhc
Q psy3145 193 RLESLRKFKDEETDVLIATDVAARGLDIR----GVKTVINYRMPHSLEHYIHRVGRT 245 (396)
Q Consensus 193 r~~~~~~f~~g~~~vLvaT~~~~~Gidi~----~v~~VI~~~~p~s~~~y~qr~GRa 245 (396)
|..++..+..++-.|+|+|-.+-.|+=-| .-...+..+-..+...+.++.=..
T Consensus 123 Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L~~~ 179 (661)
T 2d7d_A 123 RHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDI 179 (661)
T ss_dssp HHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHHHHc
Confidence 88899988776655777775444554222 123455555566677776665443
No 238
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.13 E-value=2.7e+02 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=14.1
Q ss_pred cEEEEeCChHHHHHHHHHHHhcCCceE
Q psy3145 156 HTMIFVPTKREAHEMHILLGLLGIKAG 182 (396)
Q Consensus 156 ~~iIF~~t~~~~~~l~~~L~~~~~~~~ 182 (396)
+++|.-......+.+...|...|+.+.
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 455555555555555555555555443
No 239
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.12 E-value=1.5e+02 Score=21.06 Aligned_cols=46 Identities=11% Similarity=-0.032 Sum_probs=31.2
Q ss_pred cEEEEeCC-hHHH------HHHHHHHHhcCCceEEeeCCCCHHHHHHHHHHhh
Q psy3145 156 HTMIFVPT-KREA------HEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK 201 (396)
Q Consensus 156 ~~iIF~~t-~~~~------~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~ 201 (396)
+++||+.+ ...| ..+..+|...|+....+.=..++..+....+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 45666543 3334 7888889999988877776666666666665543
Done!