RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3145
(396 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 108 bits (271), Expect = 2e-27
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL----------ESLRKFKDEETD 206
+IF +K++ E+ L LGI A + L ++L + D
Sbjct: 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD 98
Query: 207 VLIATDVAARG---LDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
+I + + T+ +P R GRT R GK G+
Sbjct: 99 SVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIY 148
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 88.4 bits (218), Expect = 2e-20
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 144 LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRL--------E 195
++ + R ++F + A ++ L GIKA G ++ +
Sbjct: 151 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKL 210
Query: 196 SLRKFKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGV 253
L +F E +VL+AT V GLD+ V V+ Y S I R GRT R G V
Sbjct: 211 ILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRV 268
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 82.1 bits (202), Expect = 2e-18
Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+ + L++++ +I+ T EA E++ L + + ++ K
Sbjct: 12 ESISTLSSIL-EKLGTGGIIYARTGEEAEEIYESL------KNKFRIGIVTATKKGDYEK 64
Query: 200 FKDEETDVLIAT----DVAARGLDI-RGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVS 254
F + E D LI T RGLD+ ++ + P + + V
Sbjct: 65 FVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVK 120
Query: 255 VSMAGEVDRKLVKQVIKNAKNPVK 278
+ + +++++ + +
Sbjct: 121 LLAYLYRNVDEIERLLPAVERHID 144
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 74.2 bits (181), Expect = 2e-16
Identities = 51/139 (36%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+R L L+ + + + ++F TKR+ E+ +L +G KAG +HG+L+Q R + +R
Sbjct: 15 ERFEALCRLL-KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRL 73
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
FK ++ +LIATDV +RG+D+ + VINY +P + E Y+HR+GRT RAGK G ++S+
Sbjct: 74 FKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 133
Query: 260 EVDRKLVKQVIKNAKNPVK 278
+ K ++ + + K +K
Sbjct: 134 RREYKKLRYIERAMKLKIK 152
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 76.5 bits (187), Expect = 3e-16
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 23/119 (19%)
Query: 154 KDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDV 213
K T+ FVP+ + +++ L G K +L + K + + D ++ TD+
Sbjct: 178 KGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDI 233
Query: 214 AARGLDI---------RGVKTVINY----------RMPHSLEHYIHRVGRTARAGKGGV 253
+ G + R +K VI MP + R GR R K
Sbjct: 234 SEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 73.0 bits (178), Expect = 5e-16
Identities = 39/139 (28%), Positives = 72/139 (51%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+ L L +IF T+R+ E+ L ++ +L Q R +++
Sbjct: 13 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKE 72
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+ + +LI+TD+ ARG+D++ V VINY +P + E+YIHR+GR R G+ GV+++
Sbjct: 73 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 132
Query: 260 EVDRKLVKQVIKNAKNPVK 278
D ++++ K ++
Sbjct: 133 NEDVGAMRELEKFYSTQIE 151
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 65.9 bits (160), Expect = 8e-14
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
+IF +K++ E+ L LGI A + L V++ATD
Sbjct: 38 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMT 90
Query: 217 GLDIRGVKT---VINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAGE 260
G + P R GRT R G GE
Sbjct: 91 GFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 137
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 66.0 bits (160), Expect = 2e-13
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 144 LLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
L+ + R ++ T++ TK+ A ++ L GIK LH + R+E +R +
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRMPH-----SLEHYIHRVGRTARAGKGGVSVSM 257
+ DVL+ ++ GLDI V V S I +GR AR G V +
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYA 139
Query: 258 AGE-------VDRKLVKQVIKNAKNPVKHRIIP 283
+ ++ I+ N KH I+P
Sbjct: 140 DTITKSMEIAIQETKRRRAIQEEYNR-KHGIVP 171
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 65.0 bits (157), Expect = 3e-13
Identities = 40/139 (28%), Positives = 72/139 (51%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
+ L L +IF TKR+ + + +HG++ Q R +++
Sbjct: 20 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 79
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+ + VLI+TDV ARGLD+ V +INY +P++ E YIHR+GR+ R G+ GV+++
Sbjct: 80 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 139
Query: 260 EVDRKLVKQVIKNAKNPVK 278
D ++++ + + +
Sbjct: 140 NDDIRILRDIEQYYSTQID 158
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 63.0 bits (152), Expect = 3e-12
Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 11/176 (6%)
Query: 88 EEYNKDTEIVVAYCWSKGTFQSNASMTSFLFLLR---PPVLLCLLCFRIRKDTHLDRKA- 143
EY K ++ + ++G A + + + L + + + K
Sbjct: 21 VEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNK 80
Query: 144 --LLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFK 201
L ++ R KD +IF + + + ++ R E L F+
Sbjct: 81 IRKLREILERHRKDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREEREEILEGFR 135
Query: 202 DEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
++++ V G+D+ + S YI R+GR R KG +
Sbjct: 136 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 191
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 61.6 bits (149), Expect = 5e-12
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 144 LLAALVCRTFKDH-TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKD 202
L+ + R + T++ V T R A E+ L GI+A LH L R +R +
Sbjct: 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL 79
Query: 203 EETDVLIATDVAARGLDIRGVKTVINYRM-----PHSLEHYIHRVGRTARAGKGGVSV-- 255
D L+ ++ GLDI V V S I +GR AR +G V +
Sbjct: 80 GHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 139
Query: 256 -----SMAGEVDRKLVKQVIKNAKNPVKHRIIP 283
+M ++ ++ ++ A N ++H I P
Sbjct: 140 DRVSEAMQRAIEETNRRRALQEAYN-LEHGITP 171
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 62.0 bits (149), Expect = 7e-12
Identities = 25/141 (17%), Positives = 54/141 (38%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
L V +I+ ++ + + L GI A H L R + K
Sbjct: 16 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEK 75
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMAG 259
F+ ++ +++AT G++ V+ V+++ +P ++E Y GR R G ++
Sbjct: 76 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 135
Query: 260 EVDRKLVKQVIKNAKNPVKHR 280
D +++ ++
Sbjct: 136 PADMAWLRRCLEEKPQGQLQD 156
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 54.6 bits (130), Expect = 1e-09
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
D+ L + +IF T+R A + + + G + L G LT R +++
Sbjct: 18 DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQR 77
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHS------LEHYIHRVGRTARAGKGGV 253
F+D + VLI T+V ARG+D++ V V+N+ +P E Y+HR+GRT R GK G+
Sbjct: 78 FRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGL 137
Query: 254 SVSMAGEVDRKLVKQVIKNAKNPVK 278
+ +M + + ++ + + +K
Sbjct: 138 AFNMIEVDELPSLMKIQDHFNSSIK 162
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 53.0 bits (126), Expect = 9e-09
Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 9/144 (6%)
Query: 134 RKDTHLDRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR 193
R+ L A + + + E L + A H L R
Sbjct: 50 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 109
Query: 194 LESLRKFKDEETDVLIATDVAARGLDIRGVKTVI-------NYRMPHSLEHYIHRVGRTA 246
F+ V++AT A G+++ + ++ Y + Y GR
Sbjct: 110 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 169
Query: 247 RAGKG--GVSVSMAGEVDRKLVKQ 268
R G G ++ + G+ DR++ +
Sbjct: 170 RPGMDERGEAIIIVGKRDREIAVK 193
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 51.5 bits (123), Expect = 5e-08
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 150 CRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLI 209
K T F+P+ R A+ M L G L+ + K ++ D ++
Sbjct: 32 ILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFE----REYPTIKQKKPDFIL 87
Query: 210 ATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVG 243
ATD+A G ++ V+ V++ R
Sbjct: 88 ATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.1 bits (105), Expect = 3e-06
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 140 DRKALLAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRK 199
++ L L+ + +IFV + + + LL A +H + Q RL ++
Sbjct: 13 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 72
Query: 200 FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM-A 258
FKD + +L+AT++ RG+DI V NY MP + Y+HRV R R G G++++ +
Sbjct: 73 FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 132
Query: 259 GEVDRKLVKQVIKNAKNPVK 278
E D K++ V + +
Sbjct: 133 DENDAKILNDVQDRFEVNIS 152
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 32.3 bits (73), Expect = 0.085
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 289 LKTPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVS------KAEK 342
L P P PPL + + Y ++ ++ EE+ + + ++
Sbjct: 2 LDLPKLPVPPLQQTLATYLQCMQH-------LVPEEQFRKSQAIVKRFGAPGGLGETLQE 54
Query: 343 MLKEKKPLHENPPREWF 359
L E++ N E++
Sbjct: 55 KLLERQEKTANWVSEYW 71
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 377
Score = 32.3 bits (73), Expect = 0.095
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 292 PSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE------QVSKAEKMLK 345
P P PPL + +D Y ++ I++EE+ DE + +K L+
Sbjct: 7 PRLPVPPLQQSLDHYLKALQP-------IVSEEEWAHTKQLVDEFQASGGVGERLQKGLE 59
Query: 346 EKKPLHENPPREWF 359
+ EN EW+
Sbjct: 60 RRARKTENWLSEWW 73
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 30.8 bits (69), Expect = 0.28
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 292 PSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADE----QVSKAEKMLKEK 347
PS P P L E + KY V+ E+++ + + + + L E+
Sbjct: 11 PSLPVPALEESLKKYLESVKP-------FANEDEYKKTEEIVQKFQEGAGKRLHQKLLER 63
Query: 348 KPLHENPPREWF 359
N EW+
Sbjct: 64 ARGKRNWLEEWW 75
>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 223
Score = 29.1 bits (65), Expect = 0.71
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 304 DKYRAKVEAIEGEVQKILTEEK-HDRLLNKADEQVSKAEKMLKEKKPLHENPP 355
D+Y V +E + +L E+ + L A E +A+K KP P
Sbjct: 13 DQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWE---EAKKRWNNIKPSRSYPK 62
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 28.7 bits (64), Expect = 0.76
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 157 TMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSRLESLRKFKDEETDVLIATDVAAR 216
++ + + LL GI L+ R + + ++ V IAT++A R
Sbjct: 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAK--NHEREAQIIEEAGQKGAVTIATNMAGR 94
Query: 217 GLDIR--------GVKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSM 257
G DI+ G V+ S GR+ R G G++
Sbjct: 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Thermus thermophilus
[TaxId: 274]}
Length = 302
Score = 27.6 bits (60), Expect = 2.4
Identities = 16/126 (12%), Positives = 26/126 (20%), Gaps = 23/126 (18%)
Query: 200 FKDEETDVLIATDVAARGLDIRG-VKTVINYRMPHSLEHYIHRVGRTARAGKGGVSVSMA 258
D+ +A + + + G T++ L V V A
Sbjct: 188 HLGYGEDLKLARRLVGVQVIVGGHSHTLLGSFPHKELSPAGPYPTVVKNPEGKDVLVVQA 247
Query: 259 G-----------EVDRKLVKQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYR 307
D K K + P E + Y
Sbjct: 248 WEWGKVVGLLEVTFDAKGELLAYKGEALLMTPEAAPE-----------DFFAKEALLAYA 296
Query: 308 AKVEAI 313
V A+
Sbjct: 297 QPVMAL 302
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 28.0 bits (61), Expect = 2.4
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 3/108 (2%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGLLGIKAGELHGNLTQPSR---LESLRKFK 201
+ A+ T D ++ + L L G ++ R +E
Sbjct: 109 ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 168
Query: 202 DEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTARAG 249
E ++++ GL++ G ++ + + + + R R G
Sbjct: 169 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 216
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas
paucimobilis [TaxId: 13689]}
Length = 121
Score = 26.5 bits (58), Expect = 3.2
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 14/97 (14%)
Query: 291 TPSFPPPPLAEIVDKYRAKVEAIEGEVQKILTEEKHDRLLNKADEQVSKAEKML------ 344
P F P E V+ + K L H A S A+ L
Sbjct: 30 VPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHY-----AGNAFSVADIYLYVMLGW 84
Query: 345 --KEKKPLHENPP-REWFQTKKERAAIKTSQAGEGLA 378
+ P + +R A+ + EGLA
Sbjct: 85 PAYVGIDMAAYPALGAYAGKIAQRPAVGAALKAEGLA 121
>d2c3fa1 b.108.1.5 (A:7-336) Phage-associated hyaluronidase, HylP1
{Streptococcus pyogenes [TaxId: 1314]}
Length = 330
Score = 26.9 bits (59), Expect = 4.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 336 QVSKAEKMLKEKKPLHENPPREWFQTKKERAA-----IKTSQAGEGLAALILYLQSHSKT 390
Q+ +EK L K HENP + AA I G G AA +Y+ S S T
Sbjct: 208 QLRGSEKALGTLKITHENPSIG--ADYDKNAAALSIDIVKKTNGAGTAAQGIYINSTSGT 265
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 25.2 bits (55), Expect = 6.6
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 271 KNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDKYRAKVEAIEGEVQK 319
+ + P +TP P + ++ + KV+ +E V
Sbjct: 2 SSGSSGAPAEPAAPKSGEAETPP-KHPGVLKV-EAILEKVQGLEQAVDS 48
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 26.1 bits (57), Expect = 6.8
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 145 LAALVCRTFKDHTMIFVPTKREAHEMHILLGL-------LGIKAGELHGNLTQPSRLESL 197
L ++ R ++ ++ + + A L + A +G+ T+ S + +
Sbjct: 23 LGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 82
Query: 198 RK---FKDEETDVLIATDVAARGLDIRGVKTVINYRMPHSLEHYIHRVGRTAR 247
K E DVLI D+ GL + ++ + R P SL+ R
Sbjct: 83 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERR 135
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 8.4
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 192 SRLESLRKFKDEETDVL----IATDVAARGLDIRGVKTVINYRMPHSLEHYIHR 241
+ L L+ ++ I D A RG V VI RM + H I
Sbjct: 144 AGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMH-AYVHCIVP 196
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 24.8 bits (54), Expect = 8.6
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 267 KQVIKNAKNPVKHRIIPPGYPRLKTPSFPPPPLAEIVDK----YRA----KVEAIEGEVQ 318
++ ++ ++ PP P ++ F PP L E++D+ +R KV
Sbjct: 7 REALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGS 66
Query: 319 KILTEEKHDRLLNKADEQVSKAEKMLKEK 347
++ ++ E +++ E KE
Sbjct: 67 DATKVQREEQRKIDEAEPLTEEEIQEKEN 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,435,517
Number of extensions: 67402
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 35
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)