Query psy3148
Match_columns 123
No_of_seqs 125 out of 1448
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 17:39:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 1.3E-20 2.8E-25 118.4 8.1 108 2-114 16-123 (160)
2 KOG0027|consensus 99.8 1.9E-20 4.1E-25 118.2 8.1 110 2-114 4-116 (151)
3 KOG0031|consensus 99.7 1.6E-17 3.4E-22 102.4 7.6 104 2-113 28-131 (171)
4 KOG0030|consensus 99.7 1.1E-17 2.4E-22 101.5 5.6 110 2-114 7-119 (152)
5 KOG0028|consensus 99.7 1.9E-16 4.2E-21 98.3 6.9 107 2-112 29-135 (172)
6 PTZ00184 calmodulin; Provision 99.6 1E-15 2.3E-20 95.6 8.4 107 2-112 7-113 (149)
7 PTZ00183 centrin; Provisional 99.6 1.5E-15 3.1E-20 96.0 8.4 107 2-112 13-119 (158)
8 cd05022 S-100A13 S-100A13: S-1 99.5 8.7E-14 1.9E-18 80.2 7.5 66 1-66 3-71 (89)
9 KOG0037|consensus 99.5 4.2E-14 9E-19 92.1 6.4 99 6-115 57-156 (221)
10 cd05027 S-100B S-100B: S-100B 99.5 3.3E-13 7.1E-18 77.8 8.5 68 1-68 3-77 (88)
11 KOG0037|consensus 99.5 1.1E-13 2.4E-18 90.1 6.8 87 4-102 122-209 (221)
12 PLN02964 phosphatidylserine de 99.5 1.2E-13 2.5E-18 103.3 7.4 100 2-111 139-243 (644)
13 PF13499 EF-hand_7: EF-hand do 99.5 5.8E-13 1.2E-17 72.7 7.2 61 7-67 1-65 (66)
14 COG5126 FRQ1 Ca2+-binding prot 99.4 1.7E-12 3.8E-17 81.8 7.2 63 5-67 91-153 (160)
15 cd00213 S-100 S-100: S-100 dom 99.4 4.4E-12 9.5E-17 73.1 7.7 68 1-68 3-77 (88)
16 smart00027 EH Eps15 homology d 99.4 9.4E-12 2E-16 72.9 8.7 63 2-66 6-68 (96)
17 cd05029 S-100A6 S-100A6: S-100 99.4 9.2E-12 2E-16 71.7 8.3 65 2-66 6-75 (88)
18 cd05026 S-100Z S-100Z: S-100Z 99.4 9.9E-12 2.2E-16 72.4 8.3 67 2-68 6-79 (93)
19 KOG0044|consensus 99.4 2.1E-12 4.6E-17 83.9 5.9 106 6-111 64-175 (193)
20 cd05031 S-100A10_like S-100A10 99.3 1E-11 2.2E-16 72.5 8.1 66 2-67 4-76 (94)
21 KOG0027|consensus 99.3 6.4E-12 1.4E-16 79.3 7.6 64 5-68 84-147 (151)
22 cd05025 S-100A1 S-100A1: S-100 99.3 1.5E-11 3.3E-16 71.5 8.5 67 2-68 5-78 (92)
23 KOG0044|consensus 99.3 8.3E-12 1.8E-16 81.1 7.8 105 6-116 26-133 (193)
24 KOG0034|consensus 99.3 8.6E-12 1.9E-16 80.9 6.8 105 2-114 29-135 (187)
25 cd00052 EH Eps15 homology doma 99.3 3.7E-11 8.1E-16 65.5 7.1 56 9-66 2-57 (67)
26 PTZ00183 centrin; Provisional 99.2 8.1E-11 1.8E-15 74.2 7.8 100 6-111 53-154 (158)
27 KOG0041|consensus 99.2 6.1E-11 1.3E-15 76.6 7.1 100 2-105 95-197 (244)
28 cd05023 S-100A11 S-100A11: S-1 99.2 1.7E-10 3.7E-15 66.6 8.3 66 2-67 5-77 (89)
29 KOG0036|consensus 99.2 6.4E-11 1.4E-15 83.6 7.4 103 2-114 10-113 (463)
30 PF13833 EF-hand_8: EF-hand do 99.2 1.6E-10 3.5E-15 60.6 6.6 50 19-68 1-51 (54)
31 PF14658 EF-hand_9: EF-hand do 99.2 2.4E-10 5.1E-15 61.7 6.5 58 11-68 3-62 (66)
32 cd00051 EFh EF-hand, calcium b 99.1 6.1E-10 1.3E-14 59.0 7.4 59 8-66 2-60 (63)
33 PTZ00184 calmodulin; Provision 99.1 3.7E-10 8E-15 70.4 7.4 99 6-110 47-147 (149)
34 KOG0040|consensus 99.1 4.8E-10 1E-14 89.1 7.5 104 2-110 2249-2360(2399)
35 KOG4223|consensus 99.1 5.3E-10 1.2E-14 76.8 6.7 112 4-116 161-275 (325)
36 cd00252 SPARC_EC SPARC_EC; ext 99.1 1.6E-09 3.5E-14 65.4 7.8 62 3-68 45-106 (116)
37 cd05030 calgranulins Calgranul 99.0 1.9E-09 4.2E-14 62.1 7.3 67 1-67 3-76 (88)
38 KOG0028|consensus 99.0 4.4E-09 9.5E-14 65.8 7.7 65 4-68 104-168 (172)
39 KOG0034|consensus 99.0 2.3E-09 5.1E-14 69.6 6.7 105 9-115 69-179 (187)
40 KOG0031|consensus 98.9 1.2E-08 2.6E-13 63.5 7.9 64 6-69 101-164 (171)
41 KOG0036|consensus 98.9 3.4E-09 7.3E-14 75.1 6.2 104 2-109 78-182 (463)
42 KOG0030|consensus 98.8 3.3E-08 7.1E-13 60.6 6.5 61 5-66 87-147 (152)
43 cd05024 S-100A10 S-100A10: A s 98.8 1.2E-07 2.6E-12 54.6 8.4 66 1-67 3-73 (91)
44 PF00036 EF-hand_1: EF hand; 98.7 1.9E-08 4E-13 45.9 3.5 29 7-35 1-29 (29)
45 PF13499 EF-hand_7: EF-hand do 98.6 1.1E-08 2.4E-13 55.6 1.2 63 44-108 2-65 (66)
46 PLN02964 phosphatidylserine de 98.6 2.6E-07 5.6E-12 69.9 8.8 65 5-69 178-242 (644)
47 PF13405 EF-hand_6: EF-hand do 98.6 8.9E-08 1.9E-12 44.4 3.6 30 7-36 1-31 (31)
48 KOG4223|consensus 98.5 1.1E-07 2.3E-12 65.7 4.3 107 3-109 74-189 (325)
49 KOG0377|consensus 98.5 4.3E-07 9.2E-12 65.4 6.0 103 4-112 462-616 (631)
50 PF12763 EF-hand_4: Cytoskelet 98.4 1.4E-06 3.1E-11 51.6 6.5 62 2-66 6-67 (104)
51 cd00252 SPARC_EC SPARC_EC; ext 98.3 5.6E-07 1.2E-11 54.3 3.0 63 38-109 44-106 (116)
52 KOG2562|consensus 98.3 5.8E-06 1.3E-10 59.8 7.9 94 7-109 279-377 (493)
53 PF13202 EF-hand_5: EF hand; P 98.3 1.4E-06 3E-11 38.3 3.0 24 8-31 1-24 (25)
54 PF00036 EF-hand_1: EF hand; 98.3 2E-06 4.3E-11 39.1 3.5 26 43-68 1-26 (29)
55 PF14788 EF-hand_10: EF hand; 98.2 1.4E-05 3E-10 40.9 6.0 48 22-69 1-48 (51)
56 KOG0377|consensus 98.1 1.9E-05 4.2E-10 57.1 7.6 61 6-66 547-611 (631)
57 PRK12309 transaldolase/EF-hand 98.1 1.6E-05 3.5E-10 57.3 6.9 52 4-68 332-383 (391)
58 KOG0046|consensus 98.1 2.5E-05 5.5E-10 57.5 7.5 64 2-66 15-81 (627)
59 cd00051 EFh EF-hand, calcium b 98.0 6.8E-06 1.5E-10 43.0 3.3 60 44-109 2-62 (63)
60 KOG0038|consensus 98.0 3.7E-05 8E-10 47.9 5.8 61 7-67 109-174 (189)
61 cd00052 EH Eps15 homology doma 97.9 7.8E-06 1.7E-10 44.1 2.5 63 45-114 2-64 (67)
62 cd05026 S-100Z S-100Z: S-100Z 97.9 1.2E-05 2.6E-10 46.7 2.7 67 43-115 11-85 (93)
63 cd05027 S-100B S-100B: S-100B 97.9 1.3E-05 2.8E-10 46.1 2.8 66 43-114 9-82 (88)
64 cd05022 S-100A13 S-100A13: S-1 97.9 1.5E-05 3.2E-10 46.0 3.0 65 43-113 9-77 (89)
65 PF13405 EF-hand_6: EF-hand do 97.8 1.6E-06 3.4E-11 40.1 -1.4 24 87-110 4-27 (31)
66 smart00027 EH Eps15 homology d 97.8 2E-05 4.2E-10 46.0 2.9 63 43-112 11-73 (96)
67 cd05031 S-100A10_like S-100A10 97.8 1.9E-05 4.1E-10 45.9 2.7 67 42-114 8-82 (94)
68 PRK12309 transaldolase/EF-hand 97.8 3.7E-05 7.9E-10 55.5 4.6 63 35-115 327-389 (391)
69 KOG0038|consensus 97.8 2.4E-05 5.2E-10 48.7 3.1 63 45-111 74-136 (189)
70 PF13833 EF-hand_8: EF-hand do 97.8 7.4E-06 1.6E-10 42.5 0.6 49 55-109 1-51 (54)
71 PF10591 SPARC_Ca_bdg: Secrete 97.8 1E-05 2.2E-10 48.7 1.0 59 6-66 54-112 (113)
72 cd05025 S-100A1 S-100A1: S-100 97.7 2.9E-05 6.4E-10 44.9 2.7 68 42-115 9-84 (92)
73 cd00213 S-100 S-100: S-100 dom 97.6 3.8E-05 8.2E-10 43.9 2.3 67 42-114 8-82 (88)
74 KOG2643|consensus 97.6 8.8E-05 1.9E-09 53.6 4.3 94 7-109 234-344 (489)
75 KOG0751|consensus 97.6 5E-05 1.1E-09 55.7 2.6 104 7-122 109-220 (694)
76 KOG4666|consensus 97.5 0.00038 8.2E-09 48.8 6.3 98 6-109 259-357 (412)
77 KOG4065|consensus 97.5 0.00041 8.9E-09 41.5 5.5 57 10-66 71-141 (144)
78 smart00054 EFh EF-hand, calciu 97.5 0.00017 3.7E-09 31.4 2.8 27 8-34 2-28 (29)
79 PF13202 EF-hand_5: EF hand; P 97.4 0.00027 5.9E-09 30.8 3.1 24 44-67 1-24 (25)
80 cd05029 S-100A6 S-100A6: S-100 97.4 0.00017 3.6E-09 41.5 2.5 65 44-114 12-82 (88)
81 cd05023 S-100A11 S-100A11: S-1 97.3 0.00026 5.7E-09 40.8 3.1 65 44-114 11-83 (89)
82 KOG4251|consensus 97.3 0.00017 3.7E-09 48.7 2.4 66 4-69 99-168 (362)
83 KOG2643|consensus 97.2 0.004 8.8E-08 45.3 8.1 105 6-111 318-453 (489)
84 PF14658 EF-hand_9: EF-hand do 97.2 0.00021 4.5E-09 38.7 1.2 59 47-111 3-64 (66)
85 KOG0751|consensus 97.0 0.0031 6.6E-08 46.7 6.2 101 5-112 35-137 (694)
86 PF05042 Caleosin: Caleosin re 96.8 0.013 2.8E-07 37.7 7.0 102 7-109 8-164 (174)
87 KOG0169|consensus 96.7 0.005 1.1E-07 47.5 5.6 97 5-110 135-231 (746)
88 KOG1029|consensus 96.6 0.0027 5.9E-08 49.2 3.9 61 4-66 193-253 (1118)
89 cd05030 calgranulins Calgranul 96.6 0.0017 3.7E-08 37.2 2.2 65 45-115 11-83 (88)
90 KOG0035|consensus 96.5 0.0065 1.4E-07 47.9 5.4 103 2-109 743-850 (890)
91 PF09279 EF-hand_like: Phospho 96.5 0.0093 2E-07 33.6 4.9 61 7-68 1-67 (83)
92 KOG1955|consensus 96.5 0.0099 2.1E-07 44.1 6.0 63 2-66 227-289 (737)
93 smart00054 EFh EF-hand, calciu 96.4 0.0063 1.4E-07 26.0 3.0 25 44-68 2-26 (29)
94 PF14788 EF-hand_10: EF hand; 96.0 0.016 3.4E-07 29.7 3.6 30 6-35 21-50 (51)
95 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0022 4.8E-08 38.5 0.6 65 36-107 48-112 (113)
96 KOG0042|consensus 96.0 0.026 5.6E-07 42.7 5.9 67 2-68 589-655 (680)
97 KOG1707|consensus 95.6 0.068 1.5E-06 40.6 6.9 110 5-114 194-346 (625)
98 KOG0041|consensus 94.8 0.031 6.8E-07 36.9 2.7 62 43-110 100-162 (244)
99 cd05024 S-100A10 S-100A10: A s 94.6 0.07 1.5E-06 30.8 3.7 30 6-35 48-77 (91)
100 KOG2562|consensus 94.6 0.036 7.8E-07 40.8 2.9 98 8-107 313-420 (493)
101 KOG4251|consensus 94.6 0.12 2.6E-06 35.4 5.1 54 13-66 288-341 (362)
102 PF12763 EF-hand_4: Cytoskelet 94.5 0.073 1.6E-06 31.5 3.6 29 6-34 43-71 (104)
103 KOG3555|consensus 94.3 0.039 8.5E-07 39.3 2.5 96 6-110 211-309 (434)
104 KOG0040|consensus 94.2 0.035 7.6E-07 46.4 2.4 63 42-110 2253-2323(2399)
105 KOG2243|consensus 94.1 0.12 2.7E-06 43.3 5.1 56 10-66 4061-4116(5019)
106 PF05517 p25-alpha: p25-alpha 93.6 0.82 1.8E-05 29.0 7.4 60 7-66 3-65 (154)
107 KOG3555|consensus 93.0 0.18 4E-06 36.0 4.0 59 7-69 251-310 (434)
108 KOG4578|consensus 92.4 0.12 2.5E-06 36.7 2.4 56 11-66 338-394 (421)
109 PF09279 EF-hand_like: Phospho 91.8 0.095 2.1E-06 29.4 1.2 65 43-111 1-69 (83)
110 KOG4347|consensus 91.1 0.32 6.9E-06 37.5 3.6 57 7-64 556-612 (671)
111 KOG4666|consensus 90.3 0.6 1.3E-05 33.3 4.1 59 6-66 296-355 (412)
112 KOG1707|consensus 89.1 0.55 1.2E-05 36.0 3.4 59 4-66 313-373 (625)
113 PF08726 EFhand_Ca_insen: Ca2+ 88.0 0.13 2.8E-06 28.1 -0.3 24 87-111 10-33 (69)
114 KOG0998|consensus 87.0 0.31 6.7E-06 39.1 1.1 62 3-66 280-341 (847)
115 KOG3866|consensus 86.9 1.7 3.6E-05 31.0 4.5 57 10-66 248-320 (442)
116 PF08976 DUF1880: Domain of un 86.7 0.62 1.3E-05 28.1 2.0 28 39-66 4-31 (118)
117 KOG1029|consensus 84.8 3.1 6.8E-05 33.2 5.5 47 18-66 27-73 (1118)
118 KOG4004|consensus 84.7 0.35 7.7E-06 32.0 0.4 57 12-70 193-250 (259)
119 PF01023 S_100: S-100/ICaBP ty 82.6 3.4 7.3E-05 20.4 3.4 33 2-34 2-36 (44)
120 KOG1955|consensus 81.4 1.7 3.8E-05 32.8 2.9 30 5-34 264-293 (737)
121 PF09069 EF-hand_3: EF-hand; 80.0 9.2 0.0002 22.1 7.4 60 6-68 3-73 (90)
122 KOG4347|consensus 79.5 2 4.3E-05 33.3 2.7 59 40-105 553-612 (671)
123 KOG3449|consensus 79.0 11 0.00025 22.5 6.4 53 9-66 4-56 (112)
124 PLN02952 phosphoinositide phos 77.9 10 0.00022 29.6 6.1 54 19-73 13-68 (599)
125 PF08726 EFhand_Ca_insen: Ca2+ 77.9 3.3 7.1E-05 22.6 2.6 53 6-66 6-65 (69)
126 PF05042 Caleosin: Caleosin re 77.6 17 0.00036 23.7 6.4 60 6-66 96-162 (174)
127 KOG2871|consensus 75.6 2.5 5.5E-05 30.8 2.2 61 6-66 309-370 (449)
128 PF12486 DUF3702: ImpA domain 71.6 23 0.0005 22.4 5.7 33 3-35 66-98 (148)
129 PF00404 Dockerin_1: Dockerin 68.2 8.1 0.00017 15.9 2.3 14 16-29 1-14 (21)
130 KOG0046|consensus 67.1 6.6 0.00014 30.1 2.8 67 39-109 13-83 (627)
131 KOG4578|consensus 65.9 3.2 6.9E-05 29.8 1.0 63 43-111 334-398 (421)
132 KOG1265|consensus 65.7 35 0.00076 28.2 6.5 61 6-66 221-295 (1189)
133 KOG0169|consensus 63.0 37 0.00079 27.3 6.2 102 6-111 172-274 (746)
134 PF02761 Cbl_N2: CBL proto-onc 62.8 27 0.00058 20.0 5.1 46 21-66 21-66 (85)
135 cd07313 terB_like_2 tellurium 62.6 15 0.00032 21.1 3.4 47 20-66 13-61 (104)
136 PF07879 PHB_acc_N: PHB/PHA ac 61.0 23 0.00049 19.1 3.5 38 13-50 10-57 (64)
137 PF08461 HTH_12: Ribonuclease 60.0 18 0.00039 19.4 3.1 37 19-55 10-46 (66)
138 PLN02222 phosphoinositide phos 57.9 73 0.0016 25.0 7.0 60 6-67 25-87 (581)
139 PF03672 UPF0154: Uncharacteri 57.6 29 0.00063 18.7 4.0 32 20-51 29-60 (64)
140 PF08414 NADPH_Ox: Respiratory 57.4 30 0.00066 20.3 3.9 57 5-66 29-88 (100)
141 PLN02228 Phosphoinositide phos 56.0 97 0.0021 24.3 7.5 60 6-67 24-89 (567)
142 PRK00523 hypothetical protein; 54.7 35 0.00077 18.8 4.0 32 20-51 37-68 (72)
143 COG4103 Uncharacterized protei 54.6 32 0.00069 21.7 3.8 58 10-69 34-94 (148)
144 PF14513 DAG_kinase_N: Diacylg 53.7 21 0.00045 22.3 3.0 51 20-72 5-62 (138)
145 PLN02230 phosphoinositide phos 52.8 1.1E+02 0.0025 24.1 7.5 60 6-66 29-98 (598)
146 TIGR02675 tape_meas_nterm tape 52.4 24 0.00052 19.4 2.9 15 20-34 28-42 (75)
147 PF01885 PTS_2-RNA: RNA 2'-pho 51.3 39 0.00084 22.2 4.2 37 16-52 26-62 (186)
148 KOG2301|consensus 51.2 14 0.00029 32.3 2.4 63 3-66 1414-1480(1592)
149 TIGR01639 P_fal_TIGR01639 Plas 49.8 39 0.00084 17.8 4.0 31 21-51 8-38 (61)
150 TIGR01848 PHA_reg_PhaR polyhyd 49.6 52 0.0011 19.6 4.1 53 13-66 10-72 (107)
151 PF09336 Vps4_C: Vps4 C termin 49.2 32 0.00069 18.2 2.9 28 22-49 29-56 (62)
152 PF07308 DUF1456: Protein of u 48.5 44 0.00096 18.1 5.2 30 23-52 14-43 (68)
153 PF09107 SelB-wing_3: Elongati 48.2 37 0.0008 17.2 3.1 30 20-54 8-37 (50)
154 PRK01844 hypothetical protein; 45.4 53 0.0011 18.1 4.0 31 21-51 37-67 (72)
155 PTZ00373 60S Acidic ribosomal 44.8 69 0.0015 19.3 6.6 51 11-66 8-58 (112)
156 PRK00819 RNA 2'-phosphotransfe 44.2 65 0.0014 21.1 4.3 34 17-50 28-61 (179)
157 COG3763 Uncharacterized protei 44.0 55 0.0012 17.9 3.9 32 20-51 36-67 (71)
158 PLN02228 Phosphoinositide phos 42.7 54 0.0012 25.6 4.3 69 38-111 20-92 (567)
159 KOG1954|consensus 42.4 69 0.0015 24.0 4.5 45 20-66 457-501 (532)
160 KOG0506|consensus 42.2 28 0.00062 26.5 2.7 71 46-119 90-167 (622)
161 PF00046 Homeobox: Homeobox do 42.0 47 0.001 16.6 4.2 41 2-49 9-49 (57)
162 PF09851 SHOCT: Short C-termin 41.1 37 0.00081 15.1 3.7 25 3-33 3-27 (31)
163 COG2818 Tag 3-methyladenine DN 40.2 27 0.00059 23.0 2.1 46 5-50 54-99 (188)
164 PLN02952 phosphoinositide phos 40.0 1.9E+02 0.0041 22.9 7.7 60 6-66 38-106 (599)
165 COG5562 Phage envelope protein 39.3 25 0.00055 21.9 1.7 21 49-69 79-100 (137)
166 cd04411 Ribosomal_P1_P2_L12p R 39.2 84 0.0018 18.6 6.7 49 11-66 7-55 (105)
167 COG1460 Uncharacterized protei 38.4 62 0.0014 19.6 3.3 24 26-49 83-106 (114)
168 KOG0506|consensus 38.3 63 0.0014 24.8 3.9 55 12-66 92-154 (622)
169 cd05833 Ribosomal_P2 Ribosomal 37.4 92 0.002 18.6 5.3 51 11-66 6-56 (109)
170 smart00513 SAP Putative DNA-bi 37.4 46 0.00099 15.1 2.5 19 22-40 3-21 (35)
171 KOG0035|consensus 36.7 29 0.00062 28.5 2.1 67 42-111 747-816 (890)
172 KOG0998|consensus 36.6 32 0.00068 28.2 2.4 59 6-66 11-69 (847)
173 COG5069 SAC6 Ca2+-binding acti 36.2 42 0.00092 25.7 2.8 61 5-66 484-544 (612)
174 PF06384 ICAT: Beta-catenin-in 35.7 60 0.0013 18.2 2.7 22 27-48 21-42 (78)
175 PF02037 SAP: SAP domain; Int 34.1 54 0.0012 15.0 2.3 19 22-40 3-21 (35)
176 PF03979 Sigma70_r1_1: Sigma-7 33.2 58 0.0013 18.1 2.5 44 5-52 6-49 (82)
177 PF05872 DUF853: Bacterial pro 33.0 2E+02 0.0043 22.2 5.7 89 2-107 124-223 (502)
178 PF07499 RuvA_C: RuvA, C-termi 31.9 71 0.0015 15.6 2.7 38 25-66 3-40 (47)
179 PF09068 EF-hand_2: EF hand; 31.9 1.2E+02 0.0027 18.5 6.4 62 5-66 40-121 (127)
180 PF12631 GTPase_Cys_C: Catalyt 31.1 94 0.002 16.8 3.1 44 7-50 24-71 (73)
181 PF07862 Nif11: Nitrogen fixat 30.6 76 0.0016 15.5 2.8 21 24-44 28-48 (49)
182 KOG0871|consensus 29.9 93 0.002 19.8 3.2 38 13-50 57-94 (156)
183 PF10982 DUF2789: Protein of u 29.5 1.1E+02 0.0023 17.0 3.3 35 26-60 6-40 (74)
184 PRK09462 fur ferric uptake reg 28.9 1.5E+02 0.0032 18.4 4.9 31 20-50 31-61 (148)
185 PF12174 RST: RCD1-SRO-TAF4 (R 28.8 76 0.0017 17.3 2.4 43 21-66 7-49 (70)
186 KOG1264|consensus 28.0 89 0.0019 25.9 3.4 96 11-110 149-248 (1267)
187 cd00086 homeodomain Homeodomai 27.6 89 0.0019 15.4 5.7 42 2-50 9-50 (59)
188 PLN02223 phosphoinositide phos 27.3 3.1E+02 0.0066 21.5 6.9 60 6-66 16-88 (537)
189 PF13551 HTH_29: Winged helix- 26.8 1.3E+02 0.0028 17.1 5.9 27 22-48 80-108 (112)
190 PF05099 TerB: Tellurite resis 26.7 30 0.00065 20.9 0.7 48 19-66 36-85 (140)
191 KOG2243|consensus 25.9 33 0.00071 30.3 0.9 24 88-111 4062-4085(5019)
192 PF09494 Slx4: Slx4 endonuclea 24.7 1.2E+02 0.0026 16.0 3.7 27 23-49 25-55 (64)
193 TIGR03573 WbuX N-acetyl sugar 24.3 2.7E+02 0.0058 20.1 5.2 11 21-31 301-311 (343)
194 PRK14981 DNA-directed RNA poly 24.0 1.7E+02 0.0037 17.4 4.0 13 38-50 78-90 (112)
195 PLN00138 large subunit ribosom 23.9 1.8E+02 0.0038 17.6 5.7 50 12-66 7-56 (113)
196 TIGR00135 gatC glutamyl-tRNA(G 23.9 1.5E+02 0.0033 16.8 4.1 29 23-51 1-29 (93)
197 PF09373 PMBR: Pseudomurein-bi 23.8 88 0.0019 14.1 2.0 12 21-32 3-14 (33)
198 PF11116 DUF2624: Protein of u 23.5 1.6E+02 0.0034 16.9 4.4 34 22-55 14-47 (85)
199 KOG4286|consensus 22.9 72 0.0016 26.0 2.1 45 11-55 475-519 (966)
200 PRK09430 djlA Dna-J like membr 22.6 2.8E+02 0.006 19.4 4.9 45 18-66 67-116 (267)
201 TIGR00624 tag DNA-3-methyladen 21.6 88 0.0019 20.5 2.1 59 5-66 52-114 (179)
202 TIGR03798 ocin_TIGR03798 bacte 21.2 1.4E+02 0.0031 15.6 3.8 25 23-47 25-49 (64)
203 PRK06402 rpl12p 50S ribosomal 21.2 2E+02 0.0043 17.2 5.7 40 22-66 16-55 (106)
204 PHA03415 putative internal vir 20.9 1.6E+02 0.0035 24.4 3.6 41 5-48 88-128 (1019)
205 PF13829 DUF4191: Domain of un 20.9 2.9E+02 0.0063 18.9 4.5 35 17-51 162-196 (224)
206 PF12307 DUF3631: Protein of u 20.8 2.6E+02 0.0057 18.5 6.1 48 4-54 101-158 (184)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=118.36 Aligned_cols=108 Identities=18% Similarity=0.348 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLA 81 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 81 (123)
++++++++++|..+|++++|.|+..+|..+++.+|..++..++.+++..++. +.+.|+|.+|+.++.......+.. ..
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~-Ee 93 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE-EE 93 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH-HH
Confidence 5789999999999999999999999999999999999999999999999998 889999999999544444322221 22
Q ss_pred ccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+. .+|+.||+|++|+|+..+++.++.+..-
T Consensus 94 l~---~aF~~fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 94 LR---EAFKLFDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred HH---HHHHHhCCCCCceecHHHHHHHHHhhcc
Confidence 23 4779999999999999999998876543
No 2
>KOG0027|consensus
Probab=99.83 E-value=1.9e-20 Score=118.22 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCc---c
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDS---P 78 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~---~ 78 (123)
.+++.+++.+|+.||++++|+|+..|+..+++.+|..++..++..++..+|.+++|.|++.+|+.+.......... .
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999954433322111 1
Q ss_pred cccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 79 VLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 79 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
...+. ++|+.||++++|+|+.+||+++|...+.
T Consensus 84 ~~el~---eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 84 SEELK---EAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHH---HHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 22344 6889999999999999999998876543
No 3
>KOG0031|consensus
Probab=99.73 E-value=1.6e-17 Score=102.44 Aligned_cols=104 Identities=26% Similarity=0.372 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLA 81 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 81 (123)
+.||++++++|+.+|.|+||.|+.++|+..+..+|..+++++++.|+.+. .|.|+|.-|+.+...++...++...
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~- 102 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEV- 102 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHH-
Confidence 57899999999999999999999999999999999999999999999986 6899999999977777665555333
Q ss_pred ccccccchheecccCcCccchHHhhhcCCchh
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLLPDVL 113 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 113 (123)
+. .+|..||.+++|.|..+.++++|.+.+
T Consensus 103 I~---~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 103 IL---NAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HH---HHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 33 488999999999999999999887643
No 4
>KOG0030|consensus
Probab=99.72 E-value=1.1e-17 Score=101.54 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHH-hhcCCCCcc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDED--NDNKISFREITHLRK-LKLGSTDSP 78 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~I~~~eF~~~~~-~~~~~~~~~ 78 (123)
.+++.+++++|..||..+||+|+..++..+||.+|.+|++.++.+.+..+..+ +-.+|+|++|+.|.. .........
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 46788999999999999999999999999999999999999999999988876 557899999999433 333333333
Q ss_pred cccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 79 VLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 79 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
...+. +.++.||++++|+|...|++++|.+.+-
T Consensus 87 ~edfv---egLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 87 YEDFV---EGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred HHHHH---HHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 44444 7899999999999999999999877653
No 5
>KOG0028|consensus
Probab=99.67 E-value=1.9e-16 Score=98.25 Aligned_cols=107 Identities=20% Similarity=0.335 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLA 81 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 81 (123)
++|.++++..|..||++++|+|+..||+.+++.+|+.+...++.+++..+++++.|.|+|++|+.+.....+..+. ...
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt-~eE 107 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT-KEE 107 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc-HHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999965555554443 223
Q ss_pred ccccccchheecccCcCccchHHhhhcCCch
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLLPDV 112 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 112 (123)
+. .+|+.+|-|++|.|+..+|+.+...+
T Consensus 108 i~---~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 108 IK---KAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HH---HHHHcccccCCCCcCHHHHHHHHHHh
Confidence 33 47799999999999999999766543
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.65 E-value=1e-15 Score=95.59 Aligned_cols=107 Identities=24% Similarity=0.396 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLA 81 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 81 (123)
+++++.++..|..+|++++|.|+..||..++..++..++...+..++..++.+++|.|+|++|+.++......... ...
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~-~~~ 85 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS-EEE 85 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH-HHH
Confidence 5678899999999999999999999999999999988888899999999999999999999999944322211111 111
Q ss_pred ccccccchheecccCcCccchHHhhhcCCch
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLLPDV 112 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 112 (123)
+. .+|..+|.+++|+|+..++..++..+
T Consensus 86 ~~---~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 86 IK---EAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HH---HHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 22 47899999999999999998877543
No 7
>PTZ00183 centrin; Provisional
Probab=99.64 E-value=1.5e-15 Score=95.99 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLA 81 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 81 (123)
+++++++..+|..+|++++|.|+..||..++..+|..++..++..++..++.+++|.|+|.+|+.+.......... ...
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~-~~~ 91 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP-REE 91 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc-HHH
Confidence 5678999999999999999999999999999999988888999999999999999999999999933322111111 122
Q ss_pred ccccccchheecccCcCccchHHhhhcCCch
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLLPDV 112 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 112 (123)
+. .+|..+|++++|+|+..+|..++...
T Consensus 92 l~---~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 92 IL---KAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HH---HHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 23 57799999999999999999876543
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.52 E-value=8.7e-14 Score=80.19 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHhhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 1 MNAFLRQLLDNTTRYDD-GRDGFLDLEELKRMMEK-LGAPQTH-LGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 1 ~~~~~~~~~~~f~~~D~-~~~G~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
++..+..+..+|+.||+ +++|+|+..||+.++.. +|..++. .+++.++..+|.|++|.|+|+||+.
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 35678899999999999 99999999999999999 8877777 8999999999999999999999999
No 9
>KOG0037|consensus
Probab=99.51 E-value=4.2e-14 Score=92.05 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=87.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLG-APQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPK 84 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~ 84 (123)
..+..+|...|.++.|.|+.+|+..+|.... .+.+.+.+..|+..+|.+..|+|+++||..+++. +..|.
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~--------i~~Wr- 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY--------INQWR- 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH--------HHHHH-
Confidence 4678899999999999999999999998664 5678889999999999999999999999996654 55566
Q ss_pred cccchheecccCcCccchHHhhhcCCchhhh
Q psy3148 85 VPGLITTIDKNLYSFFDCKCFKGLLPDVLVL 115 (123)
Q Consensus 85 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 115 (123)
.+|..+|+|++|.|+..||+++|.+.+..
T Consensus 128 --~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~ 156 (221)
T KOG0037|consen 128 --NVFRTYDRDRSGTIDSSELRQALTQLGYR 156 (221)
T ss_pred --HHHHhcccCCCCcccHHHHHHHHHHcCcC
Confidence 78899999999999999999998876653
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=3.3e-13 Score=77.79 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 1 MNAFLRQLLDNTTRYD-DGRDG-FLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 1 ~~~~~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
++.-+..+.++|+.|| ++++| .|+..||+.+|+. +|..+++.++..++..+|.+++|.|+|.+|+.+.
T Consensus 3 le~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3566889999999998 79999 5999999999999 8998999999999999999999999999999943
No 11
>KOG0037|consensus
Probab=99.49 E-value=1.1e-13 Score=90.07 Aligned_cols=87 Identities=16% Similarity=0.262 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccc
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAM 82 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~ 82 (123)
.++.|+.+|+.+|+|++|.|+.+||+.+|..+|+.++++-.+.++..++..++|.|.|++|+. +.. +..+
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~---------L~~l 192 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV---------LQRL 192 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH---------HHHH
Confidence 478999999999999999999999999999999999999999999999988899999999999 333 3444
Q ss_pred cccccchheecccCcCccch
Q psy3148 83 PKVPGLITTIDKNLYSFFDC 102 (123)
Q Consensus 83 ~~~~~~f~~~D~~~~g~i~~ 102 (123)
. ++|+.+|++..|.|+.
T Consensus 193 t---~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 193 T---EAFRRRDTAQQGSITI 209 (221)
T ss_pred H---HHHHHhccccceeEEE
Confidence 5 6889999999998654
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.48 E-value=1.2e-13 Score=103.33 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHHhCCCCCCcccHHHHHHHHHhhc-CCCC
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLG-APQTHLG---LKAMIKEVDEDNDNKISFREITHLRKLKL-GSTD 76 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~I~~~eF~~~~~~~~-~~~~ 76 (123)
+.|+++++++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+|+||+.++.... ...+
T Consensus 139 ~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~se 214 (644)
T PLN02964 139 TQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCH
Confidence 5688999999999999999997 888999999 5888876 79999999999999999999999444322 1222
Q ss_pred cccccccccccchheecccCcCccchHHhhhcCCc
Q psy3148 77 SPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 77 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
..+. ++|..+|+|++|+|+.+||++++..
T Consensus 215 ---EEL~---eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 215 ---NKKE---ELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ---HHHH---HHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 2233 5779999999999999999987655
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=5.8e-13 Score=72.72 Aligned_cols=61 Identities=30% Similarity=0.600 Sum_probs=53.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHL----GLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
.++.+|+.+|++++|+|+.+||..++..++...+.. .+..++..+|.+++|.|+|+||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 478899999999999999999999999998776554 4455599999999999999999873
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=81.80 Aligned_cols=63 Identities=29% Similarity=0.593 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
.+++..+|+.||.+++|+|+..++..++..+|...+.++++.++..++.+++|.|+|++|+.+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~ 153 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999993
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.38 E-value=4.4e-12 Score=73.09 Aligned_cols=68 Identities=24% Similarity=0.441 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 1 MNAFLRQLLDNTTRYDD--GRDGFLDLEELKRMMEK-LGAP----QTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 1 ~~~~~~~~~~~f~~~D~--~~~G~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
++++++.++.+|..+|+ +++|.|+..++..+++. +|.+ ++..++..++..++.+++|.|+|++|+.++
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 3 LEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 36889999999999999 89999999999999986 5543 458899999999999999999999999933
No 16
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.36 E-value=9.4e-12 Score=72.86 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
++++..+..+|..+|++++|.|+..++..+++..| ++..++..++..++.+++|.|+|++|+.
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~ 68 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFAL 68 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 57889999999999999999999999999999975 5778899999999999999999999999
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.36 E-value=9.2e-12 Score=71.74 Aligned_cols=65 Identities=18% Similarity=0.425 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDD-GR-DGFLDLEELKRMMEK---LGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~-~~-~G~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
++.+..+-.+|.++|. ++ +|+|+..||+.++.. +|..++.+++..++..+|.+++|+|+|.+|+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~ 75 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVT 75 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 5668889999999998 77 899999999999973 68889999999999999999999999999999
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=9.9e-12 Score=72.37 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYD-DGRDG-FLDLEELKRMMEK-L----GAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
+.-+..+.++|+.|| ++++| +|+..||+.++.. + +...+..++..++..+|.+++|.|+|.||+.+.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 455788999999999 78998 5999999999976 2 344577899999999999999999999999943
No 19
>KOG0044|consensus
Probab=99.35 E-value=2.1e-12 Score=83.88 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=81.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHh---hcCC-CC-cccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKL---KLGS-TD-SPVL 80 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~---~~~~-~~-~~~~ 80 (123)
.-...+|+.||.+++|.|+..||..+|........++.+...+..+|.+++|+|+++|++.+... ..+. .. ....
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 45677899999999999999999999998887777888899999999999999999999993221 1111 00 1111
Q ss_pred cccc-cccchheecccCcCccchHHhhhcCCc
Q psy3148 81 AMPK-VPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 81 ~~~~-~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
...+ +...|+.+|.|++|.||.+||...++.
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 1111 224889999999999999999876554
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.35 E-value=1e-11 Score=72.48 Aligned_cols=66 Identities=27% Similarity=0.509 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDD-GR-DGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~-~~-~G~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
+.-+..+..+|..||. ++ +|.|+..|+..+++. +|..++..+++.++..+|.+++|.|+|.+|+.+
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l 76 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 3457789999999997 87 799999999999986 567889999999999999999999999999983
No 21
>KOG0027|consensus
Probab=99.34 E-value=6.4e-12 Score=79.29 Aligned_cols=64 Identities=34% Similarity=0.569 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
..++.++|+.||++++|+|+..||+.+|..+|.+.+.+++..++..++.+++|.|+|.+|+.+.
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999854
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.34 E-value=1.5e-11 Score=71.45 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYD-DGRDG-FLDLEELKRMMEK-LG----APQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
+.-+..+.++|+.|| .+++| .|+..|++.+|+. +| ..++..+++.++..+|.+++|.|+|.+|+.+.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 445788999999997 99999 5999999999986 44 35688899999999999999999999999943
No 23
>KOG0044|consensus
Probab=99.33 E-value=8.3e-12 Score=81.13 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=82.8
Q ss_pred HHHHHHhhhhcCCC-CCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccc
Q psy3148 6 RQLLDNTTRYDDGR-DGFLDLEELKRMMEKLGA-PQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAM 82 (123)
Q Consensus 6 ~~~~~~f~~~D~~~-~G~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~ 82 (123)
++++.+|+.|-.+. +|.++..+++.++..... .-+......++..+|.+++|.|+|.||+. +.....+..+..+++.
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~ 105 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA 105 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh
Confidence 35555555555555 899999999999999874 44456788899999999999999999999 5555556666666655
Q ss_pred cccccchheecccCcCccchHHhhhcCCchhhhh
Q psy3148 83 PKVPGLITTIDKNLYSFFDCKCFKGLLPDVLVLT 116 (123)
Q Consensus 83 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 116 (123)
+ +.||.|++|+|+..|+..++..++.+.
T Consensus 106 F------~lyD~dgdG~It~~Eml~iv~~i~~m~ 133 (193)
T KOG0044|consen 106 F------RLYDLDGDGYITKEEMLKIVQAIYQMT 133 (193)
T ss_pred h------eeecCCCCceEcHHHHHHHHHHHHHHc
Confidence 5 999999999999999998877665543
No 24
>KOG0034|consensus
Probab=99.31 E-value=8.6e-12 Score=80.89 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhhcCCCCccc
Q psy3148 2 NAFLRQLLDNTTRYDDG-RDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNK-ISFREITHLRKLKLGSTDSPV 79 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~-~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-I~~~eF~~~~~~~~~~~~~~~ 79 (123)
.+++..+...|..++.+ ++|+|+.+||..++...-.+ -...++..++.+++|. |+|++|+..............
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHH
Confidence 36889999999999999 99999999999999333233 3567888888888777 999999995544443333333
Q ss_pred ccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 80 LAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 80 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+.-+ +|+.||.+++|+|+.+++.+++.....
T Consensus 105 Kl~f----aF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 105 KLRF----AFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHH----HHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 3334 789999999999999999987765443
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.27 E-value=3.7e-11 Score=65.46 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=52.3
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 9 LDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 9 ~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+.+|..+|++++|.|+..|+..++..+|. +.+++..++..++.+++|.|+|.+|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAI 57 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 57899999999999999999999999875 778899999999999999999999999
No 26
>PTZ00183 centrin; Provisional
Probab=99.22 E-value=8.1e-11 Score=74.19 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=78.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhh-cCCCCccccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-GAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLK-LGSTDSPVLAMP 83 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~-~~~~~~~~~~~~ 83 (123)
..+..+|..+|.+++|.|+..+|..++... ........+..++..+|.+++|.|+..+|..+.... .......+.
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~--- 129 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ--- 129 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH---
Confidence 357788999999999999999999987653 344566788999999999999999999999944322 222222233
Q ss_pred ccccchheecccCcCccchHHhhhcCCc
Q psy3148 84 KVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 84 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
..|..+|.+++|.|+..+|..++..
T Consensus 130 ---~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 130 ---EMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred ---HHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3558999999999999999987754
No 27
>KOG0041|consensus
Probab=99.22 E-value=6.1e-11 Score=76.57 Aligned_cols=100 Identities=50% Similarity=0.728 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcC--CCCcc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLG--STDSP 78 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~--~~~~~ 78 (123)
..+|+.+..+|+.+|.+.||+|+..||+.++.++|-+.++--++.|+...|.|.+|+|+|.+|+- +.+...+ ..+..
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~ 174 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSG 174 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchH
Confidence 46899999999999999999999999999999999999999999999999999999999999999 4444443 23444
Q ss_pred cccccccccchheecccCcCccchHHh
Q psy3148 79 VLAMPKVPGLITTIDKNLYSFFDCKCF 105 (123)
Q Consensus 79 ~~~~~~~~~~f~~~D~~~~g~i~~~e~ 105 (123)
...++ .....|...-|.--.+-|
T Consensus 175 ~~~LA----r~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 175 LLRLA----RLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred HHHHH----HhcccchhhhhhhhHHHH
Confidence 44455 445567665555444444
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.22 E-value=1.7e-10 Score=66.59 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 2 NAFLRQLLDNTTR-YDDGRDG-FLDLEELKRMMEKL-----GAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 2 ~~~~~~~~~~f~~-~D~~~~G-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
+..+..+..+|+. +|.+++| +|+.+||+.++... +...++.++..++..+|.+++|.|+|+||+.+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l 77 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNL 77 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 5668899999999 7788876 99999999999875 34556789999999999999999999999993
No 29
>KOG0036|consensus
Probab=99.21 E-value=6.4e-11 Score=83.63 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAP-QTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVL 80 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~ 80 (123)
++...+++..|+.+|.+++|.++..++...+..+..+ +.......++...|.+.+|+++|.+|...... . ..
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~-E~ 82 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K-EL 82 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h-HH
Confidence 4566789999999999999999999999999999877 77778888999999999999999999994331 1 11
Q ss_pred cccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 81 AMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 81 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
.+. +.|+.+|.+.+|.|...|+.+.|+..++
T Consensus 83 ~l~---~~F~~iD~~hdG~i~~~Ei~~~l~~~gi 113 (463)
T KOG0036|consen 83 ELY---RIFQSIDLEHDGKIDPNEIWRYLKDLGI 113 (463)
T ss_pred HHH---HHHhhhccccCCccCHHHHHHHHHHhCC
Confidence 122 4679999999999999999988877665
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.6e-10 Score=60.56 Aligned_cols=50 Identities=32% Similarity=0.545 Sum_probs=46.9
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 19 RDGFLDLEELKRMMEKLGAP-QTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 19 ~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
++|.|+.++|..++..+|.. ++..++..++..+|.+++|.|+|.||+.++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 47999999999999888999 999999999999999999999999999844
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=99.16 E-value=2.4e-10 Score=61.66 Aligned_cols=58 Identities=14% Similarity=0.329 Sum_probs=54.7
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCC-CcccHHHHHHHH
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGA-PQTHLGLKAMIKEVDEDND-NKISFREITHLR 68 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~I~~~eF~~~~ 68 (123)
+|..||+++.|.|...++..+|+.++. .+.+.+++.+..++|+++. |.|+++.|+.++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 699999999999999999999999988 8999999999999999987 999999999943
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.13 E-value=6.1e-10 Score=58.98 Aligned_cols=59 Identities=34% Similarity=0.557 Sum_probs=55.9
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 8 LLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 8 ~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+..+|..+|.+++|.|+..++..++..++.+.+...+..++..++.+++|.|++++|+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999987
No 33
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=3.7e-10 Score=70.37 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=76.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhh-cCCCCccccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-GAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLK-LGSTDSPVLAMP 83 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~-~~~~~~~~~~~~ 83 (123)
..+..+|..+|.+++|.|+..+|..++... ........+..++..+|.+++|.|+.++|..+.... .........
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~--- 123 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVD--- 123 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHH---
Confidence 367888999999999999999999988764 334455678889999999999999999999844332 112222222
Q ss_pred ccccchheecccCcCccchHHhhhcCC
Q psy3148 84 KVPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 84 ~~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
..|..+|.+++|.|+..+|..++.
T Consensus 124 ---~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 124 ---EMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred ---HHHHhcCCCCCCcCcHHHHHHHHh
Confidence 356899999999999999987654
No 34
>KOG0040|consensus
Probab=99.07 E-value=4.8e-10 Score=89.07 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcC
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ-------THLGLKAMIKEVDEDNDNKISFREITH-LRKLKLG 73 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~ 73 (123)
++++.++.-+|++||++++|.+++++|+.||+.+|+.+ ++++++.++...|++.+|+|+..+|++ |......
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 67899999999999999999999999999999999765 235899999999999999999999999 5543332
Q ss_pred CCCcccccccccccchheecccCcCccchHHhhhcCC
Q psy3148 74 STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 74 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
...+ ...+. .+|+.+|. +..||+..++...|+
T Consensus 2329 NI~s-~~eIE---~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2329 NILS-SEEIE---DAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred cccc-hHHHH---HHHHHhhc-CCccccHHHHHhcCC
Confidence 2222 22344 57899998 889999999866554
No 35
>KOG4223|consensus
Probab=99.07 E-value=5.3e-10 Score=76.83 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCccccc
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAP-QTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLA 81 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~ 81 (123)
.+..-.+.|+..|.|++|.++.+||..+|..-.++ +..-.+..-+...|+|++|+|+++||+. |.......+++..-.
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 35566788999999999999999999998665433 2334556677788999999999999999 665543322221110
Q ss_pred ccccccchheecccCcCccchHHhhh-cCCchhhhh
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKG-LLPDVLVLT 116 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~-~l~~~~~~~ 116 (123)
......+...|+|++|+++.+|+++ ++|+-....
T Consensus 241 -~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A 275 (325)
T KOG4223|consen 241 -TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHA 275 (325)
T ss_pred -ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHH
Confidence 0111256889999999999999987 667654443
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.06 E-value=1.6e-09 Score=65.35 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
.....+.-.|..+|.|++|.|+.+|+..+. ..+.+..+..++..+|.+++|.|+++||....
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456778899999999999999999999876 34556788999999999999999999999943
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.04 E-value=1.9e-09 Score=62.09 Aligned_cols=67 Identities=18% Similarity=0.355 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHhhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 1 MNAFLRQLLDNTTRYDDG--RDGFLDLEELKRMME-KLGAPQT----HLGLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 1 ~~~~~~~~~~~f~~~D~~--~~G~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
++.-+..+...|..++.. ++|.|+..||..++. .+|..++ ..+++.++..+|.+++|.|+|++|+.+
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~ 76 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVL 76 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 356688899999999976 489999999999997 5666565 889999999999999999999999993
No 38
>KOG0028|consensus
Probab=98.98 E-value=4.4e-09 Score=65.78 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
...+++.+|+.+|-+++|.|+..+|+.+.+.+|..++.+++..|+.+++.+++|.|+-++|..++
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999854
No 39
>KOG0034|consensus
Probab=98.98 E-value=2.3e-09 Score=69.61 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=79.3
Q ss_pred HHHhhhhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCcccHHHHHHHHHhhcC-CCC---cccccc
Q psy3148 9 LDNTTRYDDGRDGF-LDLEELKRMMEKLGAPQTHL-GLKAMIKEVDEDNDNKISFREITHLRKLKLG-STD---SPVLAM 82 (123)
Q Consensus 9 ~~~f~~~D~~~~G~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~-~~~---~~~~~~ 82 (123)
..++..|+++++|. |+..+|...+......-+.. .+.-.+..||.+++|.|+.+++..++....+ ..+ .....+
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 46788899999888 99999999998876555544 7778888999999999999999994443332 222 222222
Q ss_pred cccccchheecccCcCccchHHhhhcCCchhhh
Q psy3148 83 PKVPGLITTIDKNLYSFFDCKCFKGLLPDVLVL 115 (123)
Q Consensus 83 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 115 (123)
. ...|..+|.|++|.|+.+|++.++.....+
T Consensus 149 ~--d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~ 179 (187)
T KOG0034|consen 149 V--DKTFEEADTDGDGKISFEEFCKVVEKQPDL 179 (187)
T ss_pred H--HHHHHHhCCCCCCcCcHHHHHHHHHcCccH
Confidence 2 137799999999999999999977665333
No 40
>KOG0031|consensus
Probab=98.92 E-value=1.2e-08 Score=63.50 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=60.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK 69 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 69 (123)
..+..+|+.||++++|.|+...++.+|...|..++.++|+.++..+.++..|.++|..|+.+..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999555
No 41
>KOG0036|consensus
Probab=98.92 E-value=3.4e-09 Score=75.11 Aligned_cols=104 Identities=16% Similarity=0.073 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccc
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVL 80 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~ 80 (123)
++...++.++|+..|.++||.|+.+|+...|+.+|.+++.++++++++..|+++++.|+++||.. +...-.......+.
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~ 157 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYD 157 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999 33222222223334
Q ss_pred cccccccchheecccCcCccchHHhhhcC
Q psy3148 81 AMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 81 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
.|. .+..+|.+.+..|+.....+..
T Consensus 158 ~W~----h~~~idigE~~~iPdg~s~~e~ 182 (463)
T KOG0036|consen 158 FWR----HVLLIDIGEDAVLPDGDSKLEN 182 (463)
T ss_pred hhh----hheEEEccccccCCcchHHHHh
Confidence 344 5567888888888855554443
No 42
>KOG0030|consensus
Probab=98.78 E-value=3.3e-08 Score=60.58 Aligned_cols=61 Identities=16% Similarity=0.370 Sum_probs=55.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..++.+.++.||++++|.|...||+.+|..+|..++++++..++.- ..|.+|.|+|+.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag-~eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAG-QEDSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcc-ccccCCcCcHHHHHH
Confidence 4577888999999999999999999999999999999999999864 456689999999998
No 43
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.78 E-value=1.2e-07 Score=54.59 Aligned_cols=66 Identities=20% Similarity=0.525 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 1 ~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
++.-+..+-.+|..+- .+.+.++..||+..+.. ++..-++..++.++...|.|+||.|+|.||+.+
T Consensus 3 LE~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 3 LEHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 3556788899999998 44679999999999965 344557789999999999999999999999993
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.74 E-value=1.9e-08 Score=45.94 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=23.5
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKL 35 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~ 35 (123)
+++.+|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46778888888888888888888887653
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.63 E-value=1.1e-08 Score=55.55 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhhcC-CCCcccccccccccchheecccCcCccchHHhhhc
Q psy3148 44 LKAMIKEVDEDNDNKISFREITHLRKLKLG-STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGL 108 (123)
Q Consensus 44 ~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~-~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~ 108 (123)
+..++..+|.+++|+|+.+||..+...... .......... ...|..+|++++|.|+..||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMI--DQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHH--HHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHH--HHHHHHhCCCCcCCCcHHHHhcc
Confidence 567899999999999999999994443322 2122222211 13579999999999999999865
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=98.63 E-value=2.6e-07 Score=69.89 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=59.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK 69 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 69 (123)
...+.++|..+|.+++|.|+..||..++..++...+++++..++..+|.+++|.|+++||..++.
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 44689999999999999999999999999998888899999999999999999999999999433
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.60 E-value=8.9e-08 Score=44.35 Aligned_cols=30 Identities=37% Similarity=0.764 Sum_probs=26.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-HcC
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMME-KLG 36 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~-~~~ 36 (123)
+++.+|+.+|++++|.|+..||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999998 565
No 48
>KOG4223|consensus
Probab=98.54 E-value=1.1e-07 Score=65.72 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhh---cCCCC--
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLK---LGSTD-- 76 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~---~~~~~-- 76 (123)
+....+..++..+|.+++|.|+..|++.++...-......++.+-+..++.+.+|.|+|+++.. +.... ....+
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 4567888999999999999999999999987765555556777788889999999999999999 33210 00000
Q ss_pred --ccc-ccccccccchheecccCcCccchHHhhhcC
Q psy3148 77 --SPV-LAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 77 --~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
... ..+.+-.+.|++-|.|++|.++.+||...|
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL 189 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL 189 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc
Confidence 011 111112247788888888888888886544
No 49
>KOG0377|consensus
Probab=98.48 E-value=4.3e-07 Score=65.39 Aligned_cols=103 Identities=25% Similarity=0.352 Sum_probs=76.3
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHH---cCCCC-----------------------------------------
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEK---LGAPQ----------------------------------------- 39 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~---~~~~~----------------------------------------- 39 (123)
...++.+.|+.+|++++|+|+...+..++.. +|+|+
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 3457889999999999999999999888865 33332
Q ss_pred ---CHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcC-----CCCcccccccccccchheecccCcCccchHHhhhcCCc
Q psy3148 40 ---THLGLKAMIKEVDEDNDNKISFREITHLRKLKLG-----STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 40 ---~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~-----~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
....+..++...|.|++|.|+.+||...++.... -.+..+..+. +.+|-+++|+|+..||.+++.-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la------~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA------RSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH------HhhccCCCCcccHHHHHHHHhh
Confidence 1123455677789999999999999994443322 2333444455 8899999999999999887654
Q ss_pred h
Q psy3148 112 V 112 (123)
Q Consensus 112 ~ 112 (123)
+
T Consensus 616 v 616 (631)
T KOG0377|consen 616 V 616 (631)
T ss_pred h
Confidence 3
No 50
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.42 E-value=1.4e-06 Score=51.55 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+++.+....+|...|+ ++|.|+..+...++...+++ .+.+..++...|.+++|+++++||+-
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~--~~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP--RDVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS--HHHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC--HHHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 4578889999999986 58999999999999988655 47799999999999999999999999
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.32 E-value=5.6e-07 Score=54.33 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcC
Q psy3148 38 PQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 38 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
+.-...+..+|..+|.|++|.|+..|+..+. .......+.. .|..+|.|++|.||.+||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---l~~~e~~~~~------f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR---LDPNEHCIKP------FFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---ccchHHHHHH------HHHHHCCCCCCCCCHHHHHHHH
Confidence 3445678899999999999999999999854 1222222332 4599999999999999999876
No 52
>KOG2562|consensus
Probab=98.28 E-value=5.8e-06 Score=59.79 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh----CCCCCCcccHHHHHH-HHHhhcCCCCccccc
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH-LRKLKLGSTDSPVLA 81 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~ 81 (123)
.+...|.-+|++++|.|+.+++...-.. ..+.--+++++... -.-.+|+++|++|+. +....-......+.-
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleY 355 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEY 355 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhh
Confidence 3444588899999999999998876422 34455678888833 345678999999999 444333455556666
Q ss_pred ccccccchheecccCcCccchHHhhhcC
Q psy3148 82 MPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 82 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
+| +.+|-+++|.++..|++...
T Consensus 356 wF------rclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 356 WF------RCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred he------eeeeccCCCcccHHHHHHHH
Confidence 66 99999999999999997543
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.4e-06 Score=38.28 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=20.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHH
Q psy3148 8 LLDNTTRYDDGRDGFLDLEELKRM 31 (123)
Q Consensus 8 ~~~~f~~~D~~~~G~i~~~el~~~ 31 (123)
++++|+.+|.|++|.|+..|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467888999999999999998875
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.26 E-value=2e-06 Score=39.15 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 43 GLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 43 ~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
+++.++..+|.|++|+|+++||+.+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 57889999999999999999999844
No 55
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.18 E-value=1.4e-05 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy3148 22 FLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK 69 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~ 69 (123)
+++.+|++..|+.++..+++..+..++...|.+++|.+.-+||..+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 378899999999999999999999999999999999999999998443
No 56
>KOG0377|consensus
Probab=98.11 E-value=1.9e-05 Score=57.12 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=54.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL----GAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..+..+|+.+|+|++|.|+..||..+...+ ..+.+..++..+-...|.|+||.|+++||+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHH
Confidence 356788999999999999999999987764 4667888999999999999999999999998
No 57
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.08 E-value=1.6e-05 Score=57.29 Aligned_cols=52 Identities=27% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
....+..+|+.+|.+++|.|+..||.. +..++..+|.|++|.|+++||....
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 346788899999999999999999942 4678999999999999999999933
No 58
>KOG0046|consensus
Probab=98.06 E-value=2.5e-05 Score=57.45 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ---THLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
++++..+.+.|...| +++|+++..++..++.+.+.+. ..++++.++...+.+.+|.|+|++|+.
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVG 81 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHH
Confidence 577899999999999 9999999999999999987654 468899999999999999999999999
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.03 E-value=6.8e-06 Score=42.96 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhh-cCCCCcccccccccccchheecccCcCccchHHhhhcC
Q psy3148 44 LKAMIKEVDEDNDNKISFREITHLRKLK-LGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 44 ~~~~~~~~d~~~~g~I~~~eF~~~~~~~-~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
+..++..++.+++|.|++.+|..+.... .......+. ..|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEID------EMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH------HHHHHhCCCCCCeEeHHHHHHHh
Confidence 4567888999999999999999944332 222222223 35689999999999999997654
No 60
>KOG0038|consensus
Probab=97.95 E-value=3.7e-05 Score=47.85 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=51.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHH----HHHHHHhCCCCCCcccHHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLG-APQTHLGL----KAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
...-+|+.+|-++++.|...++...+..+. ..++.+++ +++++++|.+++|++++.+|-.+
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 345678999999999999999999999885 45666665 56777899999999999999993
No 61
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.94 E-value=7.8e-06 Score=44.10 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 45 KAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 45 ~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+.++..+|.+++|.|+..++..+.... +.....+. ..|..+|.+++|.|+..+|..++..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~------~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-GLPRSVLA------QIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCHHHHH------HHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 356788999999999999999943322 22222233 3568999999999999999887665444
No 62
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.89 E-value=1.2e-05 Score=46.73 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHHHHHHhC-CCCCC-cccHHHHHHHHHh-hc----CC-CCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 43 GLKAMIKEVD-EDNDN-KISFREITHLRKL-KL----GS-TDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 43 ~~~~~~~~~d-~~~~g-~I~~~eF~~~~~~-~~----~~-~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
.+..++..++ .+++| +|+..|+..+... .. .. ....+. +.+..+|.+++|.|+.+||..++..+.+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~------~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVD------KIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHH------HHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 3556677787 67888 5999999994432 21 11 112233 4559999999999999999987766655
Q ss_pred h
Q psy3148 115 L 115 (123)
Q Consensus 115 ~ 115 (123)
.
T Consensus 85 ~ 85 (93)
T cd05026 85 A 85 (93)
T ss_pred H
Confidence 4
No 63
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.88 E-value=1.3e-05 Score=46.09 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=47.5
Q ss_pred HHHHHHHHhC-CCCCC-cccHHHHHHHHHh-----hc-CCCCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 43 GLKAMIKEVD-EDNDN-KISFREITHLRKL-----KL-GSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 43 ~~~~~~~~~d-~~~~g-~I~~~eF~~~~~~-----~~-~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
.+...+..+| .+++| .|+..++..++.. .. ......+..+. +.+|++++|.|+.++|..++..+..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i------~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM------ETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH------HHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4677888897 79999 5999999994443 11 12223344444 8899999999999999876655443
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.88 E-value=1.5e-05 Score=45.97 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHHHHhCC-CCCCcccHHHHHHHHHh-hcC-CCC-cccccccccccchheecccCcCccchHHhhhcCCchh
Q psy3148 43 GLKAMIKEVDE-DNDNKISFREITHLRKL-KLG-STD-SPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVL 113 (123)
Q Consensus 43 ~~~~~~~~~d~-~~~g~I~~~eF~~~~~~-~~~-~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 113 (123)
.+...|..++. +++|+|+..++..+... ... -.. ..+.. .++.+|.|++|.|+.+||..++-.+.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~------mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEE------KMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHH------HHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45677888999 99999999999995443 222 112 23443 45899999999999999988665543
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.82 E-value=1.6e-06 Score=40.06 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.2
Q ss_pred cchheecccCcCccchHHhhhcCC
Q psy3148 87 GLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 87 ~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
.+|..+|++++|+|+.+||+.++.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999876
No 66
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.82 E-value=2e-05 Score=45.97 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcCCch
Q psy3148 43 GLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDV 112 (123)
Q Consensus 43 ~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 112 (123)
.+...+..+|.+++|.|++.++..+... .+.....+. ..+..+|.+++|.|+.++|..++..+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~~~~~ev~------~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK-SGLPQTLLA------KIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH-cCCCHHHHH------HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4566788899999999999999994333 232223333 35589999999999999998766543
No 67
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.81 E-value=1.9e-05 Score=45.87 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHh-h-----cCCCCcccccccccccchheecccCcCccchHHhhhcCCchh
Q psy3148 42 LGLKAMIKEVDE-DN-DNKISFREITHLRKL-K-----LGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVL 113 (123)
Q Consensus 42 ~~~~~~~~~~d~-~~-~g~I~~~eF~~~~~~-~-----~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 113 (123)
..+...+..+|. ++ +|.|+..++..+... . .......+. ..+..+|.+++|.|+.++|..++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~------~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVD------KIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHH------HHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 346778888986 86 699999999994432 1 112222333 345899999999999999998776544
Q ss_pred h
Q psy3148 114 V 114 (123)
Q Consensus 114 ~ 114 (123)
+
T Consensus 82 ~ 82 (94)
T cd05031 82 I 82 (94)
T ss_pred H
Confidence 3
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.80 E-value=3.7e-05 Score=55.51 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=52.6
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 35 LGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 35 ~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
.|...-..++..++..+|.+++|.|+.+||+. .. ..|..+|.|++|.|+.+||.+.+.....
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~------~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------------SD------AVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HH------HHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 36677778899999999999999999999963 11 2469999999999999999998877665
Q ss_pred h
Q psy3148 115 L 115 (123)
Q Consensus 115 ~ 115 (123)
+
T Consensus 389 ~ 389 (391)
T PRK12309 389 L 389 (391)
T ss_pred h
Confidence 4
No 69
>KOG0038|consensus
Probab=97.80 E-value=2.4e-05 Score=48.69 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=49.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcCCc
Q psy3148 45 KAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 45 ~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
+++...+..++.|.++|++|+.|.....+.-...++... +|+.+|-|++++|...++.+.+.+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~Y----AFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKY----AFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhh----eeEEeecCCCCcccHHHHHHHHHH
Confidence 456667888999999999999966665554444455555 889999999999999999876654
No 70
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.78 E-value=7.4e-06 Score=42.55 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHh-hcC-CCCcccccccccccchheecccCcCccchHHhhhcC
Q psy3148 55 NDNKISFREITHLRKL-KLG-STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 55 ~~g~I~~~eF~~~~~~-~~~-~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
.+|.|+.++|..+... ... .....+. ..|..+|.+++|.|+..||..++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~------~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVD------RLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHH------HHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHH------HHHHhcccCCCCCCCHHHHHHHH
Confidence 3689999999994432 222 2222333 35699999999999999998765
No 71
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.76 E-value=1e-05 Score=48.70 Aligned_cols=59 Identities=27% Similarity=0.361 Sum_probs=42.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..+.=.|..+|.|+||.|+..|+..+...+ .+.+.-+..++...|.|++|.|+..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445556999999999999999999876655 44444578899999999999999999864
No 72
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.73 E-value=2.9e-05 Score=44.87 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHh-h---cC--CCCcccccccccccchheecccCcCccchHHhhhcCCchh
Q psy3148 42 LGLKAMIKEVD-EDNDN-KISFREITHLRKL-K---LG--STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVL 113 (123)
Q Consensus 42 ~~~~~~~~~~d-~~~~g-~I~~~eF~~~~~~-~---~~--~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 113 (123)
+.+...+..+| .+++| .|+..++..+... . .+ .....+. +.+..+|++++|.|+.++|..++....
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~------~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVD------KIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHH------HHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 45778899996 99999 5999999995432 1 11 1222233 355899999999999999998776655
Q ss_pred hh
Q psy3148 114 VL 115 (123)
Q Consensus 114 ~~ 115 (123)
+.
T Consensus 83 ~~ 84 (92)
T cd05025 83 VA 84 (92)
T ss_pred HH
Confidence 43
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.65 E-value=3.8e-05 Score=43.93 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCC--CCCCcccHHHHHHHHHhhcCC------CCcccccccccccchheecccCcCccchHHhhhcCCchh
Q psy3148 42 LGLKAMIKEVDE--DNDNKISFREITHLRKLKLGS------TDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVL 113 (123)
Q Consensus 42 ~~~~~~~~~~d~--~~~g~I~~~eF~~~~~~~~~~------~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 113 (123)
..+...+..+|. +++|.|+..+|..+.....+. ....+. ..+..+|.+++|.|+.++|..++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~------~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVD------KIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHH------HHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 456778889999 899999999999954321111 122233 355899999999999999988776554
Q ss_pred h
Q psy3148 114 V 114 (123)
Q Consensus 114 ~ 114 (123)
.
T Consensus 82 ~ 82 (88)
T cd00213 82 V 82 (88)
T ss_pred H
Confidence 3
No 74
>KOG2643|consensus
Probab=97.63 E-value=8.8e-05 Score=53.58 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=63.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc------CC--------CCC-HHHHHH--HHHHhCCCCCCcccHHHHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKL------GA--------PQT-HLGLKA--MIKEVDEDNDNKISFREITHLRK 69 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~------~~--------~~~-~~~~~~--~~~~~d~~~~g~I~~~eF~~~~~ 69 (123)
.+.-+|+.||.|++|.|+.+||....... |. ..+ ..++.. ...-|.+++++++++++|+.+..
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 34557999999999999999998776331 11 000 112222 22336889999999999999443
Q ss_pred hhcCCCCcccccccccccchheecccCcCccchHHhhhcC
Q psy3148 70 LKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
.+... +..+ -|..+|+..+|.|+..+|.+++
T Consensus 314 ~Lq~E----il~l-----EF~~~~~~~~g~Ise~DFA~~l 344 (489)
T KOG2643|consen 314 NLQEE----ILEL-----EFERFDKGDSGAISEVDFAELL 344 (489)
T ss_pred HHHHH----HHHH-----HHHHhCcccccccCHHHHHHHH
Confidence 22211 1112 4688999999999999998754
No 75
>KOG0751|consensus
Probab=97.58 E-value=5e-05 Score=55.71 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=71.5
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcC------CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccc
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLG------APQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVL 80 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~------~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~ 80 (123)
....+|..||+.++|.++.+++..++.... +.++.+-+...+ .......++|.+|..+..... .+
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~------~E 179 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQ------LE 179 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHH------HH
Confidence 345678999999999999999999887742 234444444433 333345688888888332111 11
Q ss_pred cccccccchheecccCcCccchHHhhhcCCchhh--hhhccccc
Q psy3148 81 AMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV--LTQHLNRN 122 (123)
Q Consensus 81 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~ 122 (123)
... ++|...|+.++|+|+.-+++.++.++.. +++.++.|
T Consensus 180 ~~~---qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~n 220 (694)
T KOG0751|consen 180 HAE---QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEEN 220 (694)
T ss_pred HHH---HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhh
Confidence 122 5889999999999999999998887544 66666655
No 76
>KOG4666|consensus
Probab=97.54 E-value=0.00038 Score=48.76 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=80.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-GAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPK 84 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~ 84 (123)
..+...|..||.+++|.++..|....+.-+ |-+.+...++.-++.|+...||.+.=.+|-.+.+...+-+.-.+..++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf- 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLF- 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccc-
Confidence 346778999999999999998888777665 456677788889999999999998887777788777776665555555
Q ss_pred cccchheecccCcCccchHHhhhcC
Q psy3148 85 VPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 85 ~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
..++...+|.|+.++|++..
T Consensus 338 -----~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 338 -----PSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred -----hhhhcccCcceeHHHHHHHH
Confidence 99999999999999998744
No 77
>KOG4065|consensus
Probab=97.52 E-value=0.00041 Score=41.52 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=45.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHc------CC-C---CCHHHHHHHHHHh----CCCCCCcccHHHHHH
Q psy3148 10 DNTTRYDDGRDGFLDLEELKRMMEKL------GA-P---QTHLGLKAMIKEV----DEDNDNKISFREITH 66 (123)
Q Consensus 10 ~~f~~~D~~~~G~i~~~el~~~l~~~------~~-~---~~~~~~~~~~~~~----d~~~~g~I~~~eF~~ 66 (123)
..|+.+|-|++|.|+--|+..++... |. + +++.++..++... |.|++|.|+|.||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 56899999999999999999998753 32 1 3566777777654 678999999999985
No 78
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.47 E-value=0.00017 Score=31.39 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy3148 8 LLDNTTRYDDGRDGFLDLEELKRMMEK 34 (123)
Q Consensus 8 ~~~~f~~~D~~~~G~i~~~el~~~l~~ 34 (123)
+..+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 566777888888888888887777654
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.45 E-value=0.00027 Score=30.84 Aligned_cols=24 Identities=46% Similarity=0.713 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHH
Q psy3148 44 LKAMIKEVDEDNDNKISFREITHL 67 (123)
Q Consensus 44 ~~~~~~~~d~~~~g~I~~~eF~~~ 67 (123)
++.++..+|.|++|.|++.||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456888999999999999999863
No 80
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.37 E-value=0.00017 Score=41.47 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=44.0
Q ss_pred HHHHHHHhCC-CC-CCcccHHHHHHHHH-hh-cC--CCCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 44 LKAMIKEVDE-DN-DNKISFREITHLRK-LK-LG--STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 44 ~~~~~~~~d~-~~-~g~I~~~eF~~~~~-~~-~~--~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+-.++..|+. ++ +|+|+..||..+.. .. .+ .....+. +.++.+|.+++|.|+.++|..++..+..
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~------~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIA------KLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHH------HHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 3455666775 55 88999999999443 11 12 2222333 3558999999999999999876655444
No 81
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.34 E-value=0.00026 Score=40.76 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=43.5
Q ss_pred HHHHHHH-hCCCCCC-cccHHHHHHHHHhhcC------CCCcccccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 44 LKAMIKE-VDEDNDN-KISFREITHLRKLKLG------STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 44 ~~~~~~~-~d~~~~g-~I~~~eF~~~~~~~~~------~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+..++.. ++.++++ .|+..||..+.....+ .....+. +.++.+|.|++|.|+.+||..++..+..
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~------~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLD------RMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHH------HHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3445555 6677765 9999999995443321 1112233 3558999999999999999886655443
No 82
>KOG4251|consensus
Probab=97.31 E-value=0.00017 Score=48.71 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHH
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKL---GAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRK 69 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~ 69 (123)
....+..+|+..|.+-+|+|+..|+++++..- .+.-..++-+..+...|++++|.|+|++|.. +..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 35678899999999999999999999998653 1222333445567778999999999999988 443
No 83
>KOG2643|consensus
Probab=97.16 E-value=0.004 Score=45.31 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCC--HHHHHHHHHHhCCCCCCcccHHHHHHHHHhhc----------
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLG-APQT--HLGLKAMIKEVDEDNDNKISFREITHLRKLKL---------- 72 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~-~~~~--~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~---------- 72 (123)
+-+.--|..+|+..+|.|+..+|..+|-... .+.. ...++++-+.++.+ +..|++.||.++.....
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344459999999999999999998876543 2322 22455666666655 45699998887222110
Q ss_pred -----C-C-CCccccccc----------cccc-chheecccCcCccchHHhhhcCCc
Q psy3148 73 -----G-S-TDSPVLAMP----------KVPG-LITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 73 -----~-~-~~~~~~~~~----------~~~~-~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
+ . .....+.++ .+.. +|..||.|++|.++.+||..+|+.
T Consensus 397 fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 397 FYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 1 0 000111111 1223 789999999999999999887754
No 84
>PF14658 EF-hand_9: EF-hand domain
Probab=97.15 E-value=0.00021 Score=38.68 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=47.2
Q ss_pred HHHHhCCCCCCcccHHHHHH-HHHhhc-CCCCcccccccccccchheecccCc-CccchHHhhhcCCc
Q psy3148 47 MIKEVDEDNDNKISFREITH-LRKLKL-GSTDSPVLAMPKVPGLITTIDKNLY-SFFDCKCFKGLLPD 111 (123)
Q Consensus 47 ~~~~~d~~~~g~I~~~eF~~-~~~~~~-~~~~~~~~~~~~~~~~f~~~D~~~~-g~i~~~e~~~~l~~ 111 (123)
.+..+|.++.|.|...+++. +..... ...+..+..+. ..+|+++. |.|+.+.|..+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~------~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLI------NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHH------HHhCCCCCCceEeHHHHHHHHHH
Confidence 47789999999999999999 444434 45555666666 99999998 99999999987753
No 85
>KOG0751|consensus
Probab=96.98 E-value=0.0031 Score=46.72 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=66.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHH-HHHcCCCCCHHHHHHHHH-HhCCCCCCcccHHHHHHHHHhhcCCCCcccccc
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRM-MEKLGAPQTHLGLKAMIK-EVDEDNDNKISFREITHLRKLKLGSTDSPVLAM 82 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~-l~~~~~~~~~~~~~~~~~-~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 82 (123)
+..+.--|...+.++..+++.++|..- +...+.+..++++..++. ..|...||-|+|+||+.+-..+. .++....
T Consensus 35 Lr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC-~pDal~~-- 111 (694)
T KOG0751|consen 35 LRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC-APDALFE-- 111 (694)
T ss_pred HHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc-CchHHHH--
Confidence 344444455667788888999987765 333454444444444444 45677889999999999322221 1222222
Q ss_pred cccccchheecccCcCccchHHhhhcCCch
Q psy3148 83 PKVPGLITTIDKNLYSFFDCKCFKGLLPDV 112 (123)
Q Consensus 83 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 112 (123)
.+|+.||+.++|.++.+++..+..+.
T Consensus 112 ----~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 112 ----VAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ----HHHHHhcccCCCceehHHHHHHHhcc
Confidence 37799999999999999999877653
No 86
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.75 E-value=0.013 Score=37.66 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=69.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-----------------------------------------------
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ----------------------------------------------- 39 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~----------------------------------------------- 39 (123)
.++.-..-||.|+||.|.+.|--.-++.+|+.+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 456666778999999999999888888877662
Q ss_pred ------CHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccccccccc--chheecccCcCccchHHhhhcC
Q psy3148 40 ------THLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPG--LITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 40 ------~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~--~f~~~D~~~~g~i~~~e~~~~l 109 (123)
.+..++.++..+...+.+.+++.|...|.+......+. .-.+....| +...+=++.+|+++.+.++.+.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~-~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDP-FGWFAAFFEWGALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCc-chhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhc
Confidence 35667888888888777889999999966543221111 111110001 2223336889999999998754
No 87
>KOG0169|consensus
Probab=96.68 E-value=0.005 Score=47.50 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=75.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccc
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPK 84 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~ 84 (123)
..-+..+|...|++++|.++..+...+++.+...++...+..++.+.+...++++...+|+.+.......+ .+..++
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp--ev~~~f- 211 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP--EVYFLF- 211 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc--hHHHHH-
Confidence 45677889999999999999999999999999999999999999999888899999999999555433333 233233
Q ss_pred cccchheecccCcCccchHHhhhcCC
Q psy3148 85 VPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 85 ~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
..+- ++.++++..++...+.
T Consensus 212 -----~~~s-~~~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 212 -----VQYS-HGKEYLSTDDLLRFLE 231 (746)
T ss_pred -----HHHh-CCCCccCHHHHHHHHH
Confidence 3333 3377888888776554
No 88
>KOG1029|consensus
Probab=96.63 E-value=0.0027 Score=49.21 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+....+..|+.+|+..+|+++...-+.+|...+++... +..++...|.|+||+++.+||+-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~--LA~IW~LsDvd~DGkL~~dEfil 253 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQ--LAHIWTLSDVDGDGKLSADEFIL 253 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhh--HhhheeeeccCCCCcccHHHHHH
Confidence 34567889999999999999999999999998777544 77888889999999999999998
No 89
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.60 E-value=0.0017 Score=37.19 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHHHhCCC--CCCcccHHHHHHHHHhhcC-CC-----CcccccccccccchheecccCcCccchHHhhhcCCchhhh
Q psy3148 45 KAMIKEVDED--NDNKISFREITHLRKLKLG-ST-----DSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLVL 115 (123)
Q Consensus 45 ~~~~~~~d~~--~~g~I~~~eF~~~~~~~~~-~~-----~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 115 (123)
-.++..+... .+|.|+..++..+.....+ .. ...+. ..|..+|.+++|.|+.++|..++......
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~------~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAID------KIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHH------HHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3445555533 4789999999994432111 11 22233 35589999999999999999877765543
No 90
>KOG0035|consensus
Probab=96.53 E-value=0.0065 Score=47.88 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH-----HHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCC
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHL-----GLKAMIKEVDEDNDNKISFREITHLRKLKLGSTD 76 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~-----~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 76 (123)
+.++.+++..|+.+++...|.++..++..+|..+|+...++ ++..++...+.+..|+++|.+|...+.-.....+
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~ 822 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLD 822 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhc
Confidence 45688999999999999999999999999999999887642 3333444456666789999999994332223233
Q ss_pred cccccccccccchheecccCcCccchHHhhhcC
Q psy3148 77 SPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 77 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
...+.+. +|..+-++.. ++..+|+..-+
T Consensus 823 ~~~r~i~----s~~d~~ktk~-~lL~eEL~~~~ 850 (890)
T KOG0035|consen 823 TELRAIL----AFEDWAKTKA-YLLLEELVRER 850 (890)
T ss_pred HHHHHHH----HHHHHHcchh-HHHHHHHHhhc
Confidence 3333333 5555555554 88888887633
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.52 E-value=0.0093 Score=33.59 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=48.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhCCC----CCCcccHHHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKL-GA-PQTHLGLKAMIKEVDED----NDNKISFREITHLR 68 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~~ 68 (123)
++..+|..+-. +.+.|+.++|...|+.- +. ..+...+..++..+.++ ..+.+++++|..++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 46788898855 78999999999999864 43 46788999999987654 46899999999933
No 92
>KOG1955|consensus
Probab=96.51 E-value=0.0099 Score=44.15 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+||.+...+-|+...+|-.|.|+-+--++++.+..+++ .|+..+|+..|-+.||.++..||++
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi--~ELshIWeLsD~d~DGALtL~EFcA 289 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPI--EELSHIWELSDVDRDGALTLSEFCA 289 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCch--HHHHHHHhhcccCccccccHHHHHh
Confidence 47788888899999999999999999999999886665 6799999999999999999999999
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.38 E-value=0.0063 Score=26.04 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 44 LKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 44 ~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
+..++..++.+++|.|++.+|..+.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 5678899999999999999999843
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.05 E-value=0.016 Score=29.71 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL 35 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~ 35 (123)
.....+|+.+|++++|.+..+||..+.+.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 345678999999999999999999988754
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.05 E-value=0.0022 Score=38.54 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheecccCcCccchHHhhh
Q psy3148 36 GAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKG 107 (123)
Q Consensus 36 ~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 107 (123)
....-...+...|...|.|++|.|+-.|+..+...... . ...+. ..+..+|.|++|.|+..|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~-~---e~C~~---~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP-P---EHCAR---PFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST-T---GGGHH---HHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh-h---HHHHH---HHHHHcCCCCCCCCCHHHHcc
Confidence 33445667888999999999999999998875543311 1 12222 356899999999999999864
No 96
>KOG0042|consensus
Probab=95.99 E-value=0.026 Score=42.67 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
.++++..+..|..+|.++.|+++..++..+|+..+..++...+...+...+.+-+|.+...+|..+.
T Consensus 589 ~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 4677888899999999999999999999999999989999999999999998889999999999943
No 97
>KOG1707|consensus
Probab=95.64 E-value=0.068 Score=40.62 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=70.2
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHH---HhCCCC--CCcccHHHHHHHHHhhc--CC--
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEK-LGAPQTHLGLKAMIK---EVDEDN--DNKISFREITHLRKLKL--GS-- 74 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~---~~d~~~--~g~I~~~eF~~~~~~~~--~~-- 74 (123)
++.+.++|...|.|.||.++-.|+...=+. .+.++...++..+-. ..-+++ +..++...|+.+..... +.
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 568899999999999999999998877544 466666655544433 333322 34577777777322110 00
Q ss_pred -----------------------------CCccc----ccccccccchheecccCcCccchHHhhhcCCchhh
Q psy3148 75 -----------------------------TDSPV----LAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLV 114 (123)
Q Consensus 75 -----------------------------~~~~~----~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 114 (123)
+.... ..+..+...|..+|.|++|-++..|+...++....
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 00000 00001336889999999999999999887765443
No 98
>KOG0041|consensus
Probab=94.77 E-value=0.031 Score=36.89 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH-HhhcCCCCcccccccccccchheecccCcCccchHHhhhcCC
Q psy3148 43 GLKAMIKEVDEDNDNKISFREITHLR-KLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 43 ~~~~~~~~~d~~~~g~I~~~eF~~~~-~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
....++..+|.+.||+|++.|.-.|+ +......--.++.+. ...|.|.+|.|+.-+|.-+..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mi------keVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMI------KEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHH------HHhhcccccchhHHHHHHHHH
Confidence 45678888999999999999998844 333333333444444 788999999999988865443
No 99
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.64 E-value=0.07 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL 35 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~ 35 (123)
..+.+++...|.|+||.|+.+||...+..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 356778999999999999999999888665
No 100
>KOG2562|consensus
Probab=94.59 E-value=0.036 Score=40.80 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=67.4
Q ss_pred HHHHhh----hhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhc------CCCCc
Q psy3148 8 LLDNTT----RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKL------GSTDS 77 (123)
Q Consensus 8 ~~~~f~----~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~------~~~~~ 77 (123)
+.++|. .+-...+|.++.++|...+-.+...-++..++.+++..|.+++|.|+..+...+..... +....
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l 392 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEAL 392 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcc
Confidence 455666 33346689999999999998887777777899999999999999999888766222111 11111
Q ss_pred ccccccccccchheecccCcCccchHHhhh
Q psy3148 78 PVLAMPKVPGLITTIDKNLYSFFDCKCFKG 107 (123)
Q Consensus 78 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 107 (123)
.+..+ .++.+..+-+...|.|+..+|+.
T Consensus 393 ~fed~--l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 393 PFEDA--LCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cHHHH--HHHHHHHhCccCCCceeHHHHhh
Confidence 11111 11334555567899999999987
No 101
>KOG4251|consensus
Probab=94.55 E-value=0.12 Score=35.36 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=46.8
Q ss_pred hhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 13 TRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 13 ~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..+|.+++|.++.+|+....-.+.......++..++...+.+++.+++.++.+.
T Consensus 288 ElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 378999999999999999976666666667888889889999999999999988
No 102
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.46 E-value=0.073 Score=31.53 Aligned_cols=29 Identities=31% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEK 34 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~ 34 (123)
..+..+|...|.+++|+++..||..+++-
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 56788899999999999999999998764
No 103
>KOG3555|consensus
Probab=94.32 E-value=0.039 Score=39.29 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=65.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL---GAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAM 82 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 82 (123)
.+++++|+.+-.+.++......+..+-..+ -.++=..++-.||...|.+.++.++..|...+-.. .. ...+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---kn---E~Ci 284 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---KN---EACI 284 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc---Cc---hhHH
Confidence 367888888777777666665555442222 22344567889999999999999999988774332 11 1222
Q ss_pred cccccchheecccCcCccchHHhhhcCC
Q psy3148 83 PKVPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 83 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
. ..|...|...+|.|+..|+...+.
T Consensus 285 k---pFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 285 K---PFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred H---HHHhhhcccccCccccchhhhhhc
Confidence 2 345889999999999999877553
No 104
>KOG0040|consensus
Probab=94.23 E-value=0.035 Score=46.38 Aligned_cols=63 Identities=10% Similarity=0.248 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhh--------cCCCCcccccccccccchheecccCcCccchHHhhhcCC
Q psy3148 42 LGLKAMIKEVDEDNDNKISFREITHLRKLK--------LGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 42 ~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~--------~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
.++..++..||.+.+|.+++.+|.+..+.. .+.+++.+.. .....|++.+|+|+..+...+|.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~------~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEE------ILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHH------HHHhcCCCCcCcccHHHHHHHHH
Confidence 356778889999999999999999943321 2234444444 44899999999999999876553
No 105
>KOG2243|consensus
Probab=94.09 E-value=0.12 Score=43.32 Aligned_cols=56 Identities=14% Similarity=0.360 Sum_probs=46.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 10 DNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 10 ~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+.|+-+|+++.|.|+..+|..++.... ..+..+++-++.....+.+...+|++|+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHH
Confidence 347788999999999999999986543 33566788888888888888999999998
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.63 E-value=0.82 Score=29.00 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGA---PQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.+-..|..|.+.+...++...|..+++..++ .++...+..++..+...+...|+|++|+.
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~ 65 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLE 65 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHH
Confidence 4445555556666788999999999999753 47788899999988777677899999999
No 107
>KOG3555|consensus
Probab=93.00 E-value=0.18 Score=36.01 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRK 69 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~ 69 (123)
.+.=+|+++|.+.||.++.+|+..+- +.-.+.=++.++...|...+|.|+-.|++. +.+
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 45557999999999999999988763 344556678889999998999999999998 443
No 108
>KOG4578|consensus
Probab=92.43 E-value=0.12 Score=36.73 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=42.6
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLG-APQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.|..+|+|+++.|...|++.+-+-+- ..-...=..+++...|.|+|..|++.|+..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~ 394 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRG 394 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhh
Confidence 48999999999999999665543321 111223456788889999999999999999
No 109
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.78 E-value=0.095 Score=29.38 Aligned_cols=65 Identities=9% Similarity=0.159 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheeccc----CcCccchHHhhhcCCc
Q psy3148 43 GLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN----LYSFFDCKCFKGLLPD 111 (123)
Q Consensus 43 ~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 111 (123)
++..++..+.. +.+.|+.++|..++...++........+. ..+..+.++ ..+.++.+.|...|.|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~---~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAK---ELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHH---HHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHH---HHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46778888866 67899999999955544444322233333 344555444 4799999999987654
No 110
>KOG4347|consensus
Probab=91.13 E-value=0.32 Score=37.47 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=47.7
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF 64 (123)
-+.++|..+|.+++|.|+.+++...|..+...--.+.+..++..++++++ ..+.++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 46788999999999999999999999988766666778888888888877 6666655
No 111
>KOG4666|consensus
Probab=90.27 E-value=0.6 Score=33.29 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=46.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEK-LGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.-++-.|+.|+.+.||.+...+|-.++.. +|... -.+--++...+...+|+|+|.+|..
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~~lf~~i~q~d~~ki~~~~f~~ 355 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVPVLFPSIEQKDDPKIYASNFRK 355 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eeccccchhhhcccCcceeHHHHHH
Confidence 45778899999999999999887777765 34433 2355567777777899999999998
No 112
>KOG1707|consensus
Probab=89.12 E-value=0.55 Score=35.96 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-CH-HHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ-TH-LGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~-~~-~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
=++.+..+|..||.++||-++..|+..++...+..+ .. .+. .....+..|.+++..|++
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~----~~t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK----DSTVKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc----ccceecccceeehhhHHH
Confidence 367889999999999999999999999998875433 11 000 112233678999999998
No 113
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.98 E-value=0.13 Score=28.13 Aligned_cols=24 Identities=4% Similarity=0.020 Sum_probs=20.3
Q ss_pred cchheecccCcCccchHHhhhcCCc
Q psy3148 87 GLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 87 ~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
++|+.+ .+++++||..+|++.|+.
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l~p 33 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSLTP 33 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS-C
T ss_pred HHHHHH-HcCCCcccHHHHHHHcCc
Confidence 678888 899999999999997764
No 114
>KOG0998|consensus
Probab=86.96 E-value=0.31 Score=39.10 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+....+.++|...|.+.+|.|+..+....+...|. +...+...+...+..+.|.+++.+|..
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl--~~~~l~~~w~l~d~~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL--SKPRLAHVWLLADTQNTGTLSKDEFAL 341 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCCC--ChhhhhhhhhhcchhccCcccccccch
Confidence 45667788999999999999999999998877544 445688899999999999999998888
No 115
>KOG3866|consensus
Probab=86.93 E-value=1.7 Score=30.95 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=40.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCH--H-------HH----HHHHHHhCCCCCCcccHHHHHH
Q psy3148 10 DNTTRYDDGRDGFLDLEELKRMMEKL---GAPQTH--L-------GL----KAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 10 ~~f~~~D~~~~G~i~~~el~~~l~~~---~~~~~~--~-------~~----~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
-.|..+|.|+||.++..|+...+..- -+.+.+ . +. ..++...|.|.+.-|+.++|+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~ 320 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN 320 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh
Confidence 35788899999999999998887541 122211 1 11 2345567999999999999998
No 116
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.68 E-value=0.62 Score=28.09 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 39 QTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 39 ~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
++++.++.++..+..|..|+|.|.+|+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~ 31 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLS 31 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHH
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHH
Confidence 5788999999999999999999999999
No 117
>KOG1029|consensus
Probab=84.82 E-value=3.1 Score=33.24 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 18 GRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 18 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
-+.|+|+-..-+.++-..|++. ..+-.++...|.|.||+++..||.-
T Consensus 27 p~~gfitg~qArnfflqS~LP~--~VLaqIWALsDldkDGrmdi~EfSI 73 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGLPT--PVLAQIWALSDLDKDGRMDIREFSI 73 (1118)
T ss_pred CCCCccchHhhhhhHHhcCCCh--HHHHHHHHhhhcCccccchHHHHHH
Confidence 5679999999999998887775 4588899999999999999999976
No 118
>KOG4004|consensus
Probab=84.66 E-value=0.35 Score=32.03 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=39.9
Q ss_pred hhhhcC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy3148 12 TTRYDD-GRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKL 70 (123)
Q Consensus 12 f~~~D~-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~ 70 (123)
|-.+|+ -.||+++..|+.-+- .-..+.+.=+..++...|.+++|+|+..|+......
T Consensus 193 f~qld~~p~d~~~sh~el~pl~--ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR--APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCcccccccccccccc--CCcccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 445565 448999999876432 122334455677888899999999999999874443
No 119
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=82.63 E-value=3.4 Score=20.37 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDD--GRDGFLDLEELKRMMEK 34 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~--~~~G~i~~~el~~~l~~ 34 (123)
+.-+..+..+|..+-. ....+++..||+..+..
T Consensus 2 E~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 2 EKAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567778888888873 33678999999998865
No 120
>KOG1955|consensus
Probab=81.41 E-value=1.7 Score=32.84 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEK 34 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~ 34 (123)
|.++..+|.+.|.++||.++..||..++..
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 678999999999999999999999999865
No 121
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.04 E-value=9.2 Score=22.05 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-------G----APQTHLGLKAMIKEVDEDNDNKISFREITHLR 68 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~ 68 (123)
.+++.+|+.+ .|++|.++...|...|+.+ | +...+..++.++.... ....|+-++|+.+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHH
Confidence 5678889988 6889999999888887752 2 2225667777777652 35579999999943
No 122
>KOG4347|consensus
Probab=79.45 E-value=2 Score=33.35 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccccccccchheecccCcCccchHHh
Q psy3148 40 THLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCF 105 (123)
Q Consensus 40 ~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 105 (123)
+..-+.+++...|.+.+|-|+|.++++ +.....+.....+.- .|+.+|.+++ ....++.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l------~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKL------LYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHH------HHhhccCCcc-ccccccc
Confidence 444567788889999999999999999 544444433333333 4588888887 6666555
No 123
>KOG3449|consensus
Probab=78.97 E-value=11 Score=22.49 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 9 LDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 9 ~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
...|-+++..++...+..+++.+|...|.....+.++.++... .|+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHH
Confidence 3456667777777889999999999999999999999999987 455 8888887
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=77.92 E-value=10 Score=29.57 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcC
Q psy3148 19 RDGFLDLEELKRMMEKLGA--PQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLG 73 (123)
Q Consensus 19 ~~G~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~ 73 (123)
+.|.++.+++..+.+.+.. .....++..++..+..++ +.++.++|..++...++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 4689999999888877642 335678999999886543 67999999995554444
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=77.89 E-value=3.3 Score=22.64 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-------CCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDE-------DNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~I~~~eF~~ 66 (123)
.++...|+.+ .++.++|+..+|+..| .+.. ++-++..... ...|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l-----~pe~--aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL-----TPEQ--AEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS------CCC--HHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc-----CcHH--HHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5678889998 6788999999999886 3322 2344443321 1236788888874
No 126
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=77.63 E-value=17 Score=23.69 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ-------THLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+.+.++|..+++.+.+.++..|+..+++.--... +.-|...+.. .-.+.+|.+.-+....
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRG 162 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhh
Confidence 5688899999988888999999999988742221 1222222222 2345678887776554
No 127
>KOG2871|consensus
Probab=75.57 E-value=2.5 Score=30.76 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHL-GLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..+++.|+..|+.+.|+|+.+-+...+..+....++. .+..+-...++.+-|-|-.++|..
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 4678999999999999999999999998888666554 333333335555556666666555
No 128
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=71.58 E-value=23 Score=22.44 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKL 35 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~ 35 (123)
.++..+.+.....|..+.++++.+|++.++..+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 567788888889999999999999999998664
No 129
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=68.22 E-value=8.1 Score=15.88 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=7.6
Q ss_pred cCCCCCcccHHHHH
Q psy3148 16 DDGRDGFLDLEELK 29 (123)
Q Consensus 16 D~~~~G~i~~~el~ 29 (123)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34566666665544
No 130
>KOG0046|consensus
Probab=67.05 E-value=6.6 Score=30.06 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=41.8
Q ss_pred CCHHHHHHH---HHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccccccccchheecccCcCccchHHhhhcC
Q psy3148 39 QTHLGLKAM---IKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLL 109 (123)
Q Consensus 39 ~~~~~~~~~---~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 109 (123)
++..|+..+ +...+ +++|+|+..+... +.+............+. +.....+.|.+|.|+.++|..++
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~---~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIK---EILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHH---HHHhccCCCcCCccCHHHHHHHH
Confidence 344444444 33456 8899999999888 44433332111112222 35578889999999999998743
No 131
>KOG4578|consensus
Probab=65.93 E-value=3.2 Score=29.81 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhhcC--CCCcccccccccccchheecccCcCccchHHhhhcCCc
Q psy3148 43 GLKAMIKEVDEDNDNKISFREITHLRKLKLG--STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 43 ~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~--~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
.+...|...|+|.++-|.-.|+-.+...... .+..=.+. .|...|-|++-.|+.+|++..+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk------~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRK------FFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhh------cchhcccCCCceecHHHHhhhhcc
Confidence 3455666789998888886665552222111 11111222 458999999999999999987643
No 132
>KOG1265|consensus
Probab=65.67 E-value=35 Score=28.22 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=50.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhCCCC----CCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL----------GAPQTHLGLKAMIKEVDEDN----DNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~I~~~eF~~ 66 (123)
-++.++|..+-.++.-+++..+|..+|+.- ..+.+...++.++..+.++. .|.++-+.|+.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~r 295 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVR 295 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHH
Confidence 367888999998888999999999999873 23456778889999887664 58999999998
No 133
>KOG0169|consensus
Probab=62.98 E-value=37 Score=27.28 Aligned_cols=102 Identities=10% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCccccccccc
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKV 85 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~ 85 (123)
..++..|+-.+...+|.+...++......++..+ ++..++..+..+ .+.++..+++.+.....+........+.+.
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~i 247 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEI 247 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHH
Confidence 3556677777888899999999999988887776 567777776655 778998888885554444333333322211
Q ss_pred ccchheec-ccCcCccchHHhhhcCCc
Q psy3148 86 PGLITTID-KNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 86 ~~~f~~~D-~~~~g~i~~~e~~~~l~~ 111 (123)
.+.+.... ....+.++.+-|.++|-+
T Consensus 248 i~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 248 IERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHhhhhhhccccceecHHHHHHHhcC
Confidence 12222222 335566788888775543
No 134
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=62.80 E-value=27 Score=19.95 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 21 GFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
-.++-.+|..+|.+.....+..+...+-..+|...+++|+-=||-.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdv 66 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDV 66 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHH
Confidence 5699999999999986655666777777888999999999777766
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=62.65 E-value=15 Score=21.14 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 20 DGFLDLEELKRMMEKLG--APQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
||.++..|...+-..+. ..++..+...++..+........++.+|+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 61 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTS 61 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 78899988776654432 355667778888777655555678888888
No 136
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=61.03 E-value=23 Score=19.06 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=26.9
Q ss_pred hhhcCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHH
Q psy3148 13 TRYDDGRDGFLDLEELKRMMEKL----------GAPQTHLGLKAMIKE 50 (123)
Q Consensus 13 ~~~D~~~~G~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~ 50 (123)
+.+|+..+.+|+.+++..+++.- |..++...+..++.+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 46899999999999999988762 445555555444443
No 137
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=59.96 E-value=18 Score=19.38 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q psy3148 19 RDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDN 55 (123)
Q Consensus 19 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 55 (123)
.++-+...++...|...|..+++..+...+...+.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888999999988899999999999888876554
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=57.93 E-value=73 Score=25.00 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHHhCC-CCCCcccHHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLG-A-PQTHLGLKAMIKEVDE-DNDNKISFREITHL 67 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~-~~~g~I~~~eF~~~ 67 (123)
.++..+|..+-. ++.++.++|..+|.... . ..+.+.+..++..+.. ...+.++++.|..+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~y 87 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKY 87 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHH
Confidence 367777777753 47999999999998753 2 3456677777776532 23567999999993
No 139
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.57 E-value=29 Score=18.68 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
+--|+.+-++.....+|..+|+..++.++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34588888999999999999999998888764
No 140
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.42 E-value=30 Score=20.34 Aligned_cols=57 Identities=9% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC---CCCCCcccHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVD---EDNDNKISFREITH 66 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d---~~~~g~I~~~eF~~ 66 (123)
...+...|..+-. +|.|++..|..|+. -.-+.+-..+++...- .-....|+.+|...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~e 88 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKE 88 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHH
Confidence 4556677777766 89999999999983 3445555566666542 12246788888877
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=56.04 E-value=97 Score=24.27 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=42.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhCCC----CCCcccHHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-GA-PQTHLGLKAMIKEVDED----NDNKISFREITHL 67 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~ 67 (123)
.++..+|..+-. ++.++.++|..+|... +. ..+...+..++..+... ..|.++.++|..+
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHH
Confidence 356677777653 3579999999999875 32 34556677888777543 3467999999993
No 142
>PRK00523 hypothetical protein; Provisional
Probab=54.68 E-value=35 Score=18.80 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
+--|+.+-++..+..+|..||+..++.++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34588888999999999999999999888765
No 143
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.55 E-value=32 Score=21.71 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHH-HHH
Q psy3148 10 DNTTRYDDGRDGFLDLEELKRMMEKL--GAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRK 69 (123)
Q Consensus 10 ~~f~~~D~~~~G~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~-~~~ 69 (123)
-+|..++. ||.++..|.......+ .+..+..++..++.....-+...+++-.|.+ +..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45666555 5678888866554443 4667778888888876655666788899988 543
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=53.75 E-value=21 Score=22.33 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHhhc
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDE-------DNDNKISFREITHLRKLKL 72 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~I~~~eF~~~~~~~~ 72 (123)
-+.|++.||.+.=.=+.+ +...++.++.+|.. +.++.|+|+.|..+++...
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yL 62 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYL 62 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHT
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH
Confidence 367888888775433322 33456777777632 3345899999999554443
No 145
>PLN02230 phosphoinositide phospholipase C 4
Probab=52.80 E-value=1.1e+02 Score=24.09 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=42.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHhCC-------CCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGA---PQTHLGLKAMIKEVDE-------DNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~I~~~eF~~ 66 (123)
.++..+|..+-.++ +.++.++|..+|..-.. ..+...+..++..+.. -..+.++.+.|..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~ 98 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNY 98 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHH
Confidence 46788888886444 79999999999988542 2355566666654321 1234699999999
No 146
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=52.38 E-value=24 Score=19.39 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcccHHHHHHHHHH
Q psy3148 20 DGFLDLEELKRMMEK 34 (123)
Q Consensus 20 ~G~i~~~el~~~l~~ 34 (123)
.|++..+||..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 688999999888755
No 147
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.29 E-value=39 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=24.2
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy3148 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVD 52 (123)
Q Consensus 16 D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 52 (123)
..+.+|+++.+++...+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3577899999999999988777888888888887643
No 148
>KOG2301|consensus
Probab=51.23 E-value=14 Score=32.31 Aligned_cols=63 Identities=10% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAP----QTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~----~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.+++.++++|+.+|++..|.|...++...++.+.-+ ...+. +.+--.....+++.|+|.+-+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~ 1480 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILF 1480 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHH
Confidence 467899999999999999999999999999986322 22222 2222234455778888888777
No 149
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=49.79 E-value=39 Score=17.80 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 21 GFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
-.++.+|+...+..++..++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4588889999999998888888887777765
No 150
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=49.64 E-value=52 Score=19.64 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=35.7
Q ss_pred hhhcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 13 TRYDDGRDGFLDLEELKRMMEK----------LGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 13 ~~~D~~~~G~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+.+|+..+.+|+.+++...++. .|..++...+..++.+....+..-++-. |+.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~-~L~ 72 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD-FLT 72 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH-HHH
Confidence 3678889999999999998875 2556666666666666655544444433 444
No 151
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=49.17 E-value=32 Score=18.21 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy3148 22 FLDLEELKRMMEKLGAPQTHLGLKAMIK 49 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~~~~~~~~~~ 49 (123)
.|+.++|..+|+.....++..++.+...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4789999999999888888888766543
No 152
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=48.46 E-value=44 Score=18.10 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy3148 23 LDLEELKRMMEKLGAPQTHLGLKAMIKEVD 52 (123)
Q Consensus 23 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 52 (123)
++..++..++...|..++.+++..++..-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 445678899999999999999988887643
No 153
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=48.24 E-value=37 Score=17.16 Aligned_cols=30 Identities=10% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDED 54 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 54 (123)
.|.|+..+++.++ ..+...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL-----GLSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH-----TS-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH-----CccHHHHHHHHHHHhcc
Confidence 6889999999998 66777777777777644
No 154
>PRK01844 hypothetical protein; Provisional
Probab=45.36 E-value=53 Score=18.12 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 21 GFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
--|+.+-++..+..+|..||+..++.++...
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4588888999999999999999998888765
No 155
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.78 E-value=69 Score=19.29 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=41.2
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.|-.+-..++..++..++..+|...|..+....+..++..+. | .+.++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 344455566777999999999999999999999999998873 2 58888887
No 156
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=44.16 E-value=65 Score=21.08 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy3148 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKE 50 (123)
Q Consensus 17 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (123)
-|.+|.++.+++..+++.-+...+.+.+..+...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 4778999999999999876667788888877765
No 157
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.00 E-value=55 Score=17.94 Aligned_cols=32 Identities=13% Similarity=0.367 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
+--|+.+-++..+..+|..+|+..++.++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34588888888888999999998888887764
No 158
>PLN02228 Phosphoinositide phospholipase C
Probab=42.67 E-value=54 Score=25.58 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhcCCCCcccccccccccchheeccc----CcCccchHHhhhcCCc
Q psy3148 38 PQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN----LYSFFDCKCFKGLLPD 111 (123)
Q Consensus 38 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 111 (123)
.....++..++..+..+ +.++.++|..++...++........+. +.+..+... ..|.++.+.|..+|.+
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQ---DIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHH---HHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 33556888888887643 579999998855544443322222222 222333221 3467888888876654
No 159
>KOG1954|consensus
Probab=42.42 E-value=69 Score=24.01 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+|+|+-..-+..+... .+++..+-+++...|.+.+|.++=+||.-
T Consensus 457 ~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 6788877777666555 44456688999999999999999999987
No 160
>KOG0506|consensus
Probab=42.24 E-value=28 Score=26.55 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=43.1
Q ss_pred HHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccccccccchheec----ccCc-CccchHHhhhc-CCchhhhhhc
Q psy3148 46 AMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVPGLITTID----KNLY-SFFDCKCFKGL-LPDVLVLTQH 118 (123)
Q Consensus 46 ~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~~~~~~~f~~~D----~~~~-g~i~~~e~~~~-l~~~~~~~~~ 118 (123)
.++..+.....+++.+..|+. +........+..++.+. +..+.+| .+.+ +.++.+-|+++ .+++.+++|.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mM---d~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqA 166 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMM---DEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQA 166 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHH---HHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHH
Confidence 344445545568889888888 65555555666666555 4444444 2333 44888888884 4555556665
Q ss_pred c
Q psy3148 119 L 119 (123)
Q Consensus 119 ~ 119 (123)
+
T Consensus 167 L 167 (622)
T KOG0506|consen 167 L 167 (622)
T ss_pred H
Confidence 4
No 161
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=42.03 E-value=47 Score=16.59 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIK 49 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 49 (123)
.+++..|...|.. +.+++..+...+-..+|.+ ...|..+|.
T Consensus 9 ~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~--~~~V~~WF~ 49 (57)
T PF00046_consen 9 KEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT--ERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcccccccccccccccccc--ccccccCHH
Confidence 4677888888885 5677777777777777544 445666554
No 162
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=41.11 E-value=37 Score=15.14 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q psy3148 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMME 33 (123)
Q Consensus 3 ~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~ 33 (123)
+++..+...+. .|.|+.+|+...-.
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 45556666555 47788777766543
No 163
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=40.17 E-value=27 Score=23.02 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKE 50 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (123)
.+.++++|..||+.+--..+.+++..+|...|+.-....++..+..
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 4578899999999999999999999999888876555555554443
No 164
>PLN02952 phosphoinositide phospholipase C
Probab=40.04 E-value=1.9e+02 Score=22.94 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHhC-------CCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL-GA-PQTHLGLKAMIKEVD-------EDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d-------~~~~g~I~~~eF~~ 66 (123)
.++..+|..+-.++ +.++.++|..+|... +. ..+...+..++..+- ......+++++|..
T Consensus 38 ~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~ 106 (599)
T PLN02952 38 DDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFH 106 (599)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHH
Confidence 47788888886543 689999999999875 32 355566666655431 11234589999999
No 165
>COG5562 Phage envelope protein [General function prediction only]
Probab=39.33 E-value=25 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHhCCCCCCcccHHHHHH-HHH
Q psy3148 49 KEVDEDNDNKISFREITH-LRK 69 (123)
Q Consensus 49 ~~~d~~~~g~I~~~eF~~-~~~ 69 (123)
.....+..|..+|++|++ +..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 344556689999999999 665
No 166
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=39.17 E-value=84 Score=18.63 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=38.4
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..-..+.... ++..++..+|...|..+....+..++..+. ..+.++.+.
T Consensus 7 ~Lll~~~g~~--~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~ 55 (105)
T cd04411 7 YLLLHKGGKE--LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVIS 55 (105)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3334444333 999999999999999999999999988872 358888888
No 167
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.35 E-value=62 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q psy3148 26 EELKRMMEKLGAPQTHLGLKAMIK 49 (123)
Q Consensus 26 ~el~~~l~~~~~~~~~~~~~~~~~ 49 (123)
.|++.++.+-+..+++++++.++.
T Consensus 83 ~ElRsIla~e~~~~s~E~l~~Ild 106 (114)
T COG1460 83 DELRSILAKERVMLSDEELDKILD 106 (114)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHH
Confidence 344444444444444444444443
No 168
>KOG0506|consensus
Probab=38.26 E-value=63 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.5
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh---C-----CCCCCcccHHHHHH
Q psy3148 12 TTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV---D-----EDNDNKISFREITH 66 (123)
Q Consensus 12 f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~g~I~~~eF~~ 66 (123)
|-.|-...++.++.--|..+|+..|+.-++.-+..|+... + ....+.++-+.|..
T Consensus 92 FyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKk 154 (622)
T KOG0506|consen 92 FYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKK 154 (622)
T ss_pred hHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHH
Confidence 5555555679999999999999999998888888888763 2 22345666666655
No 169
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=37.42 E-value=92 Score=18.61 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=41.2
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.|-.+-..++..++..++..+|...|..+....+..+...+. | .+..+.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa 56 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIA 56 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 344555566778999999999999999999989988888773 2 57888888
No 170
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=37.38 E-value=46 Score=15.11 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy3148 22 FLDLEELKRMMEKLGAPQT 40 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~ 40 (123)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4667888888888887654
No 171
>KOG0035|consensus
Probab=36.74 E-value=29 Score=28.48 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHH-HHHhhcC--CCCcccccccccccchheecccCcCccchHHhhhcCCc
Q psy3148 42 LGLKAMIKEVDEDNDNKISFREITH-LRKLKLG--STDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 42 ~~~~~~~~~~d~~~~g~I~~~eF~~-~~~~~~~--~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
.++..++..++....+..++++|+. ++..... ........++ ......|+.+.|.++..++...|+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~---~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWF---RLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHH---HHHhccCcccccceeHHHHHhHhhh
Confidence 4567777788888888999999999 4433322 2233445555 5667888888899999998776654
No 172
>KOG0998|consensus
Probab=36.60 E-value=32 Score=28.19 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
..+...|+..|+.++|.|+..+-...+...|++. ..+-.++...+..+.|.++..+|..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~--qvl~qiws~~d~~~~g~l~~q~f~~ 69 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPD--QVLGQIWSLADSSGKGFLNRQGFYA 69 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccccch--hhhhccccccccccCCccccccccc
Confidence 3466789999999999999999888887776553 4466677778888889999999988
No 173
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=36.23 E-value=42 Score=25.70 Aligned_cols=61 Identities=10% Similarity=-0.029 Sum_probs=40.8
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
+......|.++-+.+.-.++..++..++..+|.....++--..|...+...+ .+.|..|+.
T Consensus 484 l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~ 544 (612)
T COG5069 484 LRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLK 544 (612)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHH
Confidence 4555667887777666679999999999999877665444333333322222 467888877
No 174
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=35.68 E-value=60 Score=18.21 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q psy3148 27 ELKRMMEKLGAPQTHLGLKAMI 48 (123)
Q Consensus 27 el~~~l~~~~~~~~~~~~~~~~ 48 (123)
|+..+|+++|..+++++..-+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 6788899999999988765443
No 175
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=34.13 E-value=54 Score=14.98 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy3148 22 FLDLEELKRMMEKLGAPQT 40 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~ 40 (123)
.++..|++..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3567788888888877654
No 176
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=33.17 E-value=58 Score=18.10 Aligned_cols=44 Identities=7% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVD 52 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 52 (123)
...++.+...- ...|+|+..++..+|... .++...+..++..+.
T Consensus 6 ~~~i~~Li~~g--K~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 6 EEAIKKLIEKG--KKKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 34444444431 247899999999998643 356677777777664
No 177
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=32.96 E-value=2e+02 Score=22.20 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHhhc---------
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKL--------- 72 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~~~~~~--------- 72 (123)
+.|..-+.-+|+..|.++=-.|+.++|+.+|.-++.. .+.+...| |.|+-.-.-.+.+...
T Consensus 124 dtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~-----~~e~~~~y-----G~is~aS~gaI~R~ll~LE~qG~d~ 193 (502)
T PF05872_consen 124 DTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN-----AKELSAEY-----GNISSASIGAIQRALLVLEQQGGDQ 193 (502)
T ss_pred hHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh-----HHHHHHHc-----CCccHHHHHHHHHHHHHHHHcchHh
Confidence 3466677888999999988899999999999776332 23333443 4555444333222111
Q ss_pred --CCCCcccccccccccchheecccCcCccchHHhhh
Q psy3148 73 --GSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKG 107 (123)
Q Consensus 73 --~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 107 (123)
+.+.-.+. .|...|.+|.|.|+.-....
T Consensus 194 FFGEPaldi~-------Dl~r~~~~GrG~IniL~a~~ 223 (502)
T PF05872_consen 194 FFGEPALDIE-------DLMRTDADGRGVINILAADK 223 (502)
T ss_pred hCCCccCCHH-------HHhccCCCCCEEEEEEEhHh
Confidence 12222222 44467789999988655543
No 178
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.89 E-value=71 Score=15.64 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 25 LEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 25 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.+|...+|..+|+.. .++...+..... ...++.++.+.
T Consensus 3 ~~d~~~AL~~LGy~~--~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLGYSK--AEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTTS-H--HHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHhhc--CCCCCHHHHHH
Confidence 357788888887764 557777777653 23456777665
No 179
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.89 E-value=1.2e+02 Score=18.48 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhcCCC--CCcccHHHHHHHHHHcC--------CCCC----------HHHHHHHHHHhCCCCCCcccHHHH
Q psy3148 5 LRQLLDNTTRYDDGR--DGFLDLEELKRMMEKLG--------APQT----------HLGLKAMIKEVDEDNDNKISFREI 64 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~--~G~i~~~el~~~l~~~~--------~~~~----------~~~~~~~~~~~d~~~~g~I~~~eF 64 (123)
+..+.++|..+.-+. +..++..++..+|..+- .... +--+..++..||++..|.|..-.|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 345566777666433 56799999999887642 1111 123466777899999999998887
Q ss_pred HH
Q psy3148 65 TH 66 (123)
Q Consensus 65 ~~ 66 (123)
..
T Consensus 120 Kv 121 (127)
T PF09068_consen 120 KV 121 (127)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 180
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.06 E-value=94 Score=16.79 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q psy3148 7 QLLDNTTRYDDGRDGFLDLEELKRMMEKL----GAPQTHLGLKAMIKE 50 (123)
Q Consensus 7 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~----~~~~~~~~~~~~~~~ 50 (123)
.+..+...++..-.-.+-..+++.++..+ |...+++-+..+|..
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~ 71 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSN 71 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh
Confidence 34444444444333344455666666554 455555555655543
No 181
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=30.56 E-value=76 Score=15.55 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q psy3148 24 DLEELKRMMEKLGAPQTHLGL 44 (123)
Q Consensus 24 ~~~el~~~l~~~~~~~~~~~~ 44 (123)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 456677777777777776554
No 182
>KOG0871|consensus
Probab=29.88 E-value=93 Score=19.78 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=27.5
Q ss_pred hhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy3148 13 TRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKE 50 (123)
Q Consensus 13 ~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (123)
..++.+...+|..+.+..+|..+|+.---+++...+..
T Consensus 57 eic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~ 94 (156)
T KOG0871|consen 57 EICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLEN 94 (156)
T ss_pred HHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 35667778899999999999999987433444444443
No 183
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=29.48 E-value=1.1e+02 Score=17.01 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCccc
Q psy3148 26 EELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60 (123)
Q Consensus 26 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~ 60 (123)
..+...+..+|.+-++..+..++..+....+-.+.
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~~L~ 40 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLPADVHLA 40 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---TTS-ST
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCccc
Confidence 35777888899999999999998887655544443
No 184
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.86 E-value=1.5e+02 Score=18.36 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=17.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy3148 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKE 50 (123)
Q Consensus 20 ~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (123)
++.++.+|+...|+..+..++...+.+.+..
T Consensus 31 ~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~ 61 (148)
T PRK09462 31 NHHVSAEDLYKRLIDMGEEIGLATVYRVLNQ 61 (148)
T ss_pred CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 3456666666666665555555555554444
No 185
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=28.79 E-value=76 Score=17.30 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 21 GFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
-.++..-|..+|... ++......+...|+.=..++|+-++|+.
T Consensus 7 p~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr 49 (70)
T PF12174_consen 7 PWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVR 49 (70)
T ss_pred CcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 345555555555442 3333344444444333467899999988
No 186
>KOG1264|consensus
Probab=28.01 E-value=89 Score=25.92 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=53.3
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHH-HHHHHhCCCCCCcccHHHHHH-HHHhhcCCCCcccccccccccc
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLK-AMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVPGL 88 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~-~~~~~~d~~~~g~I~~~eF~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (123)
.+=..|...-..|+..+++.+|...++.++..... .-+.+ +.-..+.++|++|.. ..+.........+.... ++
T Consensus 149 ~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~---~~ 224 (1267)
T KOG1264|consen 149 QIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFK---KD 224 (1267)
T ss_pred hheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhccc---ch
Confidence 34445655666788999999988877776653322 11211 223456799999998 33333333322222221 11
Q ss_pred --hheecccCcCccchHHhhhcCC
Q psy3148 89 --ITTIDKNLYSFFDCKCFKGLLP 110 (123)
Q Consensus 89 --f~~~D~~~~g~i~~~e~~~~l~ 110 (123)
...-+...-..++..+|++.|-
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLI 248 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHH
Confidence 1222333445688888887653
No 187
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=27.64 E-value=89 Score=15.42 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy3148 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKE 50 (123)
Q Consensus 2 ~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (123)
++++..|..+|.. +.+.+..++..+-..+|. +...|..+|..
T Consensus 9 ~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l--~~~qV~~WF~n 50 (59)
T cd00086 9 PEQLEELEKEFEK-----NPYPSREEREELAKELGL--TERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence 4567777777776 456777777777777653 44556666543
No 188
>PLN02223 phosphoinositide phospholipase C
Probab=27.33 E-value=3.1e+02 Score=21.52 Aligned_cols=60 Identities=13% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc----C-CCCCHHHHHHHHHHhCCC--------CCCcccHHHHHH
Q psy3148 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKL----G-APQTHLGLKAMIKEVDED--------NDNKISFREITH 66 (123)
Q Consensus 6 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~~----~-~~~~~~~~~~~~~~~d~~--------~~g~I~~~eF~~ 66 (123)
.+++++|..+- .+.|.++...+...|.-+ | ...+.++.+.++..+-.. ..+.++.+.|..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~ 88 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNE 88 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHH
Confidence 45677788774 667889999999988333 2 345566777777754322 125699999999
No 189
>PF13551 HTH_29: Winged helix-turn helix
Probab=26.80 E-value=1.3e+02 Score=17.06 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=11.5
Q ss_pred cccHHHHHHHH-H-HcCCCCCHHHHHHHH
Q psy3148 22 FLDLEELKRMM-E-KLGAPQTHLGLKAMI 48 (123)
Q Consensus 22 ~i~~~el~~~l-~-~~~~~~~~~~~~~~~ 48 (123)
..+...+...| . ..|..++...+..++
T Consensus 80 ~~t~~~l~~~l~~~~~~~~~s~~ti~r~L 108 (112)
T PF13551_consen 80 RWTLEELAEWLIEEEFGIDVSPSTIRRIL 108 (112)
T ss_pred cccHHHHHHHHHHhccCccCCHHHHHHHH
Confidence 34444444433 2 223444444444444
No 190
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=26.69 E-value=30 Score=20.95 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 19 RDGFLDLEELKRMMEKL--GAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 19 ~~G~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
-||.++..|...+...+ ....+......++..+.......+++.+|+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLR 85 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 37889999888776655 2333344566666665543334567777776
No 191
>KOG2243|consensus
Probab=25.93 E-value=33 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.2
Q ss_pred chheecccCcCccchHHhhhcCCc
Q psy3148 88 LITTIDKNLYSFFDCKCFKGLLPD 111 (123)
Q Consensus 88 ~f~~~D~~~~g~i~~~e~~~~l~~ 111 (123)
.|+.+|+||.|.|+..+|..++..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~ 4085 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG 4085 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc
Confidence 568999999999999999987754
No 192
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=24.69 E-value=1.2e+02 Score=15.95 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHcCC----CCCHHHHHHHHH
Q psy3148 23 LDLEELKRMMEKLGA----PQTHLGLKAMIK 49 (123)
Q Consensus 23 i~~~el~~~l~~~~~----~~~~~~~~~~~~ 49 (123)
|..++|...|+..|. ..+...+..+.+
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~lD 55 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWLD 55 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence 666777777776666 455555544443
No 193
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.28 E-value=2.7e+02 Score=20.11 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=4.1
Q ss_pred CcccHHHHHHH
Q psy3148 21 GFLDLEELKRM 31 (123)
Q Consensus 21 G~i~~~el~~~ 31 (123)
|.|+++|-...
T Consensus 301 G~itReeal~~ 311 (343)
T TIGR03573 301 GRITREEAIEL 311 (343)
T ss_pred CCCCHHHHHHH
Confidence 33333333333
No 194
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=23.98 E-value=1.7e+02 Score=17.44 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHH
Q psy3148 38 PQTHLGLKAMIKE 50 (123)
Q Consensus 38 ~~~~~~~~~~~~~ 50 (123)
|-+.+++..++..
T Consensus 78 P~~~dElrai~~~ 90 (112)
T PRK14981 78 PETRDELRAIFAK 90 (112)
T ss_pred CCCHHHHHHHHHH
Confidence 3344555555544
No 195
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=23.95 E-value=1.8e+02 Score=17.57 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=39.0
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 12 TTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 12 f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
|-+.--.++..++..++..+|...|..+....+..++..+. | -+..+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 33334455667999999999999999999989988888873 2 57788875
No 196
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=23.85 E-value=1.5e+02 Score=16.76 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 23 LDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 23 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
|+.+++..+-+...+.++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677888777778888888888777665
No 197
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.84 E-value=88 Score=14.09 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=5.5
Q ss_pred CcccHHHHHHHH
Q psy3148 21 GFLDLEELKRMM 32 (123)
Q Consensus 21 G~i~~~el~~~l 32 (123)
|.|+..++..+.
T Consensus 3 ~~i~~~~~~d~a 14 (33)
T PF09373_consen 3 GTISKEEYLDMA 14 (33)
T ss_pred ceecHHHHHHHH
Confidence 444444444443
No 198
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.52 E-value=1.6e+02 Score=16.86 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q psy3148 22 FLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDN 55 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 55 (123)
.|+..||...-+..+.+++...+..+......++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKN 47 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 5888999999999999999999988888765443
No 199
>KOG4286|consensus
Probab=22.86 E-value=72 Score=25.97 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.2
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q psy3148 11 NTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDN 55 (123)
Q Consensus 11 ~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 55 (123)
.++.||+.++|.|..-+|+..+-.+.....++.+..+|.....++
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST 519 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch
Confidence 467999999999999999998877766666666667887765443
No 200
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.60 E-value=2.8e+02 Score=19.35 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHH---HHHHHHHhCCCCCCcccHHHHHH
Q psy3148 18 GRDGFLDLEELKRMMEKL--GAPQTHLG---LKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 18 ~~~G~i~~~el~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.-||.++..|+. +.+.+ ...++.+. +..++... .....++.+|+.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~ 116 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLR 116 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHH
Confidence 448899999987 33432 13344444 44444443 233467888887
No 201
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.64 E-value=88 Score=20.52 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh----CCCCCCcccHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH 66 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~I~~~eF~~ 66 (123)
...++++|.-||+..-...+..++..++...+..-....+..++..+ .... + +|.+|+-
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW 114 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLW 114 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHH
Confidence 45788999999999888889999999888777655555555555432 1111 1 7888885
No 202
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=21.21 E-value=1.4e+02 Score=15.57 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHH
Q psy3148 23 LDLEELKRMMEKLGAPQTHLGLKAM 47 (123)
Q Consensus 23 i~~~el~~~l~~~~~~~~~~~~~~~ 47 (123)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4577888889999999999888764
No 203
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=21.15 E-value=2e+02 Score=17.17 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy3148 22 FLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66 (123)
Q Consensus 22 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 66 (123)
.|+...+..+|...|..+....+..+...+. .++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 7999999999999999999999988888772 367777776
No 204
>PHA03415 putative internal virion protein; Provisional
Probab=20.88 E-value=1.6e+02 Score=24.38 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy3148 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMI 48 (123)
Q Consensus 5 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 48 (123)
...-.+.|..|||+-+|+ .|...+|+..|...++..+..+-
T Consensus 88 ~~~~~e~f~~~dp~fd~k---r~~~d~l~~~g~~~t~~~l~~la 128 (1019)
T PHA03415 88 DDDRDEMFNDFDPNFDGK---REAGDILNAHGIEDTDDHLEALA 128 (1019)
T ss_pred hccHHHhcccCCCCccch---HHHHHHHHHcCCCCchhHHHHHH
Confidence 345567899999998885 56777888888887766554443
No 205
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.88 E-value=2.9e+02 Score=18.93 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy3148 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV 51 (123)
Q Consensus 17 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (123)
.+++|.++...+...+.++...++..|+..+-...
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 47789999999999999999889888887765543
No 206
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=20.83 E-value=2.6e+02 Score=18.45 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhCCC
Q psy3148 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKL----------GAPQTHLGLKAMIKEVDED 54 (123)
Q Consensus 4 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~ 54 (123)
-+.+++.+|.. .+.-.|+..+|...|... |.+++...+..++..|+..
T Consensus 101 LL~DIr~vf~~---~~~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI~ 158 (184)
T PF12307_consen 101 LLADIREVFEA---GGEDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGIR 158 (184)
T ss_pred hHHHHHHHHcc---CCCCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCCC
Confidence 35667777764 233568888888888764 3445666666677666543
Done!