RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3148
(123 letters)
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 73.0 bits (179), Expect = 9e-18
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
L +D +G +D+ LKRM+EKLG P+THL LK +I+EV ++ S+ +
Sbjct: 47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSD 105
Score = 27.2 bits (60), Expect = 1.0
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGS 74
+ FLD + + P K E D + + I + L KL +
Sbjct: 25 EGINKQFLDDPKYSNDEDL---PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPK 81
Query: 75 TDSPVLAMPKVPGLITTIDKN 95
T + + I +
Sbjct: 82 THLELKRL------IREVSSG 96
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 69.3 bits (170), Expect = 7e-17
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G +D+ LKRM+EKLG P+THL LK +I EV + S+ +
Sbjct: 41 FDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPD 89
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 69.5 bits (170), Expect = 2e-16
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G +DL LKRMMEKLG P+THL +K MI EV + IS+R+
Sbjct: 58 EFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRD 107
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 55.6 bits (135), Expect = 6e-12
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG + ++EL+R M LG P L AMI+E D D D ++++ E
Sbjct: 15 FDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEE 63
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 57.9 bits (140), Expect = 1e-11
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D ++G + L+E K + G Q+ + + D D ++ E+T +
Sbjct: 118 VDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYT 177
Query: 75 TDSPVLAMPKVPGL 88
D P L
Sbjct: 178 MD------PACEKL 185
Score = 35.2 bits (81), Expect = 0.002
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 14 RYDDGRDGFLDLEEL-----KRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREIT 65
D +G + L+E+ ++ LGA E E
Sbjct: 24 FLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETD 80
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 18/92 (19%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTH-----------LGLKAMIKEVDEDNDNKISFREI 64
D +KL + + A+ VD+D + I+ E
Sbjct: 72 GMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEW 131
Query: 65 TH-LRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ + + D +
Sbjct: 132 KAYTKAAGIIQSSEDCEET------FRVCDID 157
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 54.5 bits (132), Expect = 3e-11
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D ++G++ EL+ +M LG T ++ MIKE D D D ++++ E
Sbjct: 18 FDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEE 66
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 55.9 bits (135), Expect = 6e-11
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D G + L+E K + G + +A + D DN + E+T +
Sbjct: 122 FDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYT 181
Query: 75 TDS 77
D
Sbjct: 182 LDP 184
Score = 33.9 bits (78), Expect = 0.006
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 15 YDDGRDGFLDLEELKRM-----MEKLGAPQTHLGLKAMIKEVDEDND-----NKISFRE 63
D +G + L+E+ KL A + E +I+F +
Sbjct: 29 LDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQ 87
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 54.8 bits (133), Expect = 6e-11
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+DD G + + LKR+ ++LG T L+ MI E D D D ++S +E
Sbjct: 88 FDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQE 136
Score = 47.8 bits (115), Expect = 3e-08
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDS 77
G +D++ELK M LG +K MI E+D++ K++F + + K+ D+
Sbjct: 20 TGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDT 77
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 55.9 bits (135), Expect = 6e-11
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D +DG++ L E K ++ +G T +D + + +IS E L
Sbjct: 111 IDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFG 170
Query: 75 TDS 77
+
Sbjct: 171 LEE 173
Score = 39.7 bits (93), Expect = 6e-05
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLG---------APQTHLGLKAMIKEVDEDNDNKISFREI 64
R D DGF+ E+ + + ++ A +T + ++ +IS E
Sbjct: 22 RVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEA 81
Query: 65 THL--RKLKLGSTDSPVLAMPKVPGLITTIDKN 95
L + +A+ + + ID +
Sbjct: 82 AVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTD 114
Score = 32.4 bits (74), Expect = 0.018
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 14 RYDDGRDGFLDLEE-LKRMMEKLGAPQTH------LGLKAMIKEVDEDNDNKISFREITH 66
+ + +EE + L + + M +D D D +S E
Sbjct: 67 QLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKA 126
Query: 67 -LRKLKLGSTDSPVLAM 82
L+ + TD +
Sbjct: 127 FLQAVGPDLTDDKAITC 143
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 55.3 bits (134), Expect = 7e-11
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+DD G + +++L+R+ ++LG T L+ MI E D ++DN+I E
Sbjct: 110 FDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDE 158
Score = 47.6 bits (114), Expect = 5e-08
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDS 77
G +D +ELK M LG +K MI E+D+D I F E + K+G DS
Sbjct: 42 SGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDS 99
Score = 29.1 bits (66), Expect = 0.27
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMM-EKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+++++ D G +D EE MM K+G + + + D+DN I+ ++
Sbjct: 66 IKKMIS---EIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKD 122
Query: 64 ITH-LRKLKLGSTDSPVLAM 82
+ ++L T+ + M
Sbjct: 123 LRRVAKELGENLTEEELQEM 142
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 54.9 bits (133), Expect = 7e-11
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
YD +G++ + ++ ++ +L + L AMI E+D D + F E
Sbjct: 100 YDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEE 148
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G + +++ ++E LG QT ++ +I E D + I F
Sbjct: 28 SGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDS 71
Score = 29.1 bits (66), Expect = 0.27
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 15 YDDGRDGFLDLEE-LKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH-LR 68
+D +G +D + LG ++ ++E D++ + IS + L
Sbjct: 59 FDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILA 118
Query: 69 KLKLGSTDSPVLAM 82
+L + + AM
Sbjct: 119 ELDETLSSEDLDAM 132
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 54.9 bits (133), Expect = 9e-11
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DGF+D+EEL ++ G T ++ ++K+ D++ND +I F E
Sbjct: 105 FDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDE 153
Score = 46.0 bits (110), Expect = 2e-07
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + +EL +M LG T L A+I+EVDED I F E
Sbjct: 29 FDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Score = 29.5 bits (67), Expect = 0.19
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH-LRK 69
D+ G +D EE MM + + + D++ D I E+ LR
Sbjct: 65 VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 124
Query: 70 LKLGSTDSPVLAM 82
T+ + +
Sbjct: 125 TGEHVTEEDIEDL 137
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 55.2 bits (133), Expect = 1e-10
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL-RKLKLG 73
DD DG +D++ELK MM+ PQ ++ D D K+ E+ HL RK +
Sbjct: 137 LDDDGDGTVDVDELKTMMKAFDVPQEAA--YTFFEKADTDKSGKLERTELVHLFRKFWME 194
Query: 74 STDSPVLAMPKVPGL 88
D P+ G+
Sbjct: 195 PYD------PQWDGV 203
Score = 40.6 bits (95), Expect = 3e-05
Identities = 5/58 (8%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAP---------QTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG ++++E+ +++ + ++ + N + +
Sbjct: 45 FDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRED 102
Score = 30.9 bits (70), Expect = 0.073
Identities = 9/91 (9%), Positives = 17/91 (18%), Gaps = 18/91 (19%)
Query: 16 DDGRDGFLDLEELKRMMEKLG-----------APQTHLGLKAMIKEVDEDNDNKISFREI 64
L E+ L + +D+D D + E+
Sbjct: 91 GVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDEL 150
Query: 65 THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ K D +
Sbjct: 151 KTMMK-AFDVPQEAAYTF------FEKADTD 174
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 54.1 bits (131), Expect = 2e-10
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+DD G + ++ L+R+ ++LG T L+AMI+E D D D +I+ E
Sbjct: 105 FDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENE 153
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGST 75
D DGFLD ELK M+ LG + +I E D + + + + + + K+
Sbjct: 33 DMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKR 92
Query: 76 DS 77
D
Sbjct: 93 DP 94
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 51.8 bits (125), Expect = 2e-10
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLG--LKAMIKEVDEDNDNKISFRE 63
+G + EELK +M+ LG L MI+EVD++ D ++SF E
Sbjct: 17 KEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEE 66
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 53.7 bits (130), Expect = 2e-10
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG++DLEELK M++ G T ++ ++K+ D++ND +I + E
Sbjct: 104 FDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 152
Score = 50.6 bits (122), Expect = 4e-09
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTD 76
DG + +EL ++M LG T L+ MI EVDED + F E + +
Sbjct: 30 GAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDS 89
Query: 77 S 77
Sbjct: 90 K 90
Score = 29.4 bits (67), Expect = 0.20
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH-LRK 69
D+ G +D +E MM + + + + ++ D++ D I E+ L+
Sbjct: 64 VDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQA 123
Query: 70 LKLGSTDSPVLAM 82
T+ + +
Sbjct: 124 TGETITEDDIEEL 136
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 51.3 bits (124), Expect = 3e-10
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +DG L L+E + + T + +E+D D + +++ E
Sbjct: 10 FDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
Score = 25.5 bits (57), Expect = 1.8
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 44 LKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
K + ++ D++ D K+S E T ++ ID +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF------FEEIDVD 49
Score = 24.4 bits (54), Expect = 5.2
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 17 DGRDGFLDLEELKRMMEKL 35
DG +G L+ +E +EK+
Sbjct: 49 DG-NGELNADEFTSCIEKM 66
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 53.3 bits (129), Expect = 4e-10
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D +G++ EL+ +M LG T + MI+E D D D ++++ E + K G
Sbjct: 93 FDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGG 152
Query: 75 TDSP 78
+
Sbjct: 153 GGAA 156
Score = 46.8 bits (112), Expect = 1e-07
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D DG + +EL +M LG T L+ MI EVD D + I F E + K+
Sbjct: 20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD 79
Query: 75 TDS 77
TDS
Sbjct: 80 TDS 82
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISF 61
D DG ++ EE +MM G K +I+ +
Sbjct: 130 DIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSVL 179
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 51.6 bits (124), Expect = 4e-10
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D R G L+ EE + + +L +A+ + +D D D I+F+E
Sbjct: 35 ACDANRSGRLEREEFRALCTELRVRPADA--EAVFQRLDADRDGAITFQE 82
Score = 24.6 bits (54), Expect = 6.6
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 26 EELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAM 82
E L + L+++ D + ++ E L +L + A+
Sbjct: 12 ENLYFQGADGDGEELA-RLRSVFAACDANRSGRLEREEFRALCT-ELRVRPADAEAV 66
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 53.2 bits (128), Expect = 5e-10
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE-ITHLRKLKLG 73
D DG ++ +E + LG + +VD + + ++S E +T +R G
Sbjct: 111 CDKNADGQINADEFAAWLTALGMSKAEA--AEAFNQVDTNGNGELSLDELLTAVRDFHFG 168
Query: 74 STDSPVL 80
D +L
Sbjct: 169 RLDVELL 175
Score = 36.7 bits (85), Expect = 5e-04
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 16 DDGRDGFLDLEELKRMMEKLG--------APQTHLGLKAMIKEVDEDNDNKISFREITHL 67
G DG L E+ R+ E L +K ++ D++ D +I+ E
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAW 127
Query: 68 RKLKLGSTDSPVLAMPKVPGLITTIDKN 95
LG + + +D N
Sbjct: 128 LT-ALGMSKAEAAEA------FNQVDTN 148
Score = 34.7 bits (80), Expect = 0.003
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 15/65 (23%)
Query: 14 RYDDGRDGFLDLEELKRMMEKL----GAPQTHLGLKA-----------MIKEVDEDNDNK 58
R+D +G L+ + ++ + + G ++ + KE +D
Sbjct: 15 RWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGS 74
Query: 59 ISFRE 63
++ +
Sbjct: 75 LTEEQ 79
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 51.1 bits (123), Expect = 6e-10
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + +EL +M LG T L A+I+EVDED I F E
Sbjct: 29 FDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 53.1 bits (128), Expect = 6e-10
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D+G DG E LKR + G + + + E D + I ++ +
Sbjct: 135 FDEG-DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGAKE 193
Query: 75 TDS 77
+
Sbjct: 194 EGA 196
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D +DGF+ +++ + LG T L +M+ E I+F + ++
Sbjct: 66 IDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFGDRIAG 121
Query: 75 TDS 77
TD
Sbjct: 122 TDE 124
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 51.1 bits (123), Expect = 7e-10
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D +G++ EL+ +M LG T + MI+E D D D ++++ E
Sbjct: 38 EDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 86
Score = 24.2 bits (53), Expect = 8.5
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 24 DLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAM 82
E + + ++ + D+D + IS E+ H + L TD V M
Sbjct: 11 SSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 70
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 50.6 bits (122), Expect = 8e-10
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLG-APQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG +D +E K +M+K+G P T ++ +KE DED + I E
Sbjct: 17 FDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPE 66
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 52.2 bits (126), Expect = 9e-10
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 15 YDDGRDGFLDLEELKR-MMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG + EL+ M LG H ++ +I++VD + D ++ F E
Sbjct: 97 FDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEE 146
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +DG+++ +L M +G T + L + ++++ + + F +
Sbjct: 20 FDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDD 68
Score = 29.8 bits (68), Expect = 0.11
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 15 YDDGRDGFLDLEE-LKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITHLRK 69
+ G +D ++ ++ M KL A + +++ D + D +IS E+ +
Sbjct: 56 INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMR 115
Query: 70 LKLG 73
LG
Sbjct: 116 ALLG 119
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 51.1 bits (123), Expect = 1e-09
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D + GF++ EEL+ ++ + L KA + D D D KI E
Sbjct: 51 LDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEE 102
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 51.3 bits (124), Expect = 1e-09
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G + EL+ +M LG T + MI+E D D D I++ E
Sbjct: 92 FDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 140
Score = 46.3 bits (111), Expect = 1e-07
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D DG + +EL +M LG T L+ MI EVD D + I F E L K+
Sbjct: 19 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKE 78
Query: 75 TDS 77
DS
Sbjct: 79 QDS 81
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 50.0 bits (120), Expect = 1e-09
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D D L EEL +M LGA T + ++K+ D+DN K +
Sbjct: 23 FDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQE 82
Query: 75 TDS 77
DS
Sbjct: 83 VDS 85
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 51.7 bits (125), Expect = 1e-09
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G++ +EL++ E+ G + + ++++VD+DND +I + E
Sbjct: 108 FDKDGSGYITPDELQQACEEFGVEDVRI--EELMRDVDQDNDGRIDYNE 154
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D + G + EELK ++++GA + +++ D DN I ++E
Sbjct: 37 DADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKE 84
Score = 27.5 bits (62), Expect = 0.83
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 22 FLDLEELKRMMEKLGAPQTHL------GLKAMIKEVDEDNDNKISFREI-THLRKLKLGS 74
F + + K+M ++ A L GLK M +D D +I+F E+ L+++
Sbjct: 3 FSAMNKFKKMALRVIA--ESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANL 60
Query: 75 TDSPVLAMPKVPGLITTIDKN 95
+S +L + + D +
Sbjct: 61 KESEILDL------MQAADVD 75
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 51.7 bits (124), Expect = 2e-09
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D DG + + + R + G P+ + +D D D K+ EI
Sbjct: 107 ADTDGDGAVTVADTARALTAFGVPEDLA--RQAAAALDTDGDGKVGETEIVPA 157
Score = 41.3 bits (97), Expect = 1e-05
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 17/98 (17%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAP---------------QTHLGLKAMIKEVDEDNDNKI 59
+D +G +D + + + A + + D D D +I
Sbjct: 13 FDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRI 72
Query: 60 SFREITHL--RKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ E ++L+ +A P + + D +
Sbjct: 73 TREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTD 110
Score = 37.8 bits (88), Expect = 2e-04
Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 17/102 (16%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLG-------APQTHLGLKAMIKEVDE 53
A + L D D + EE K A L A + D
Sbjct: 53 AEALWQGLAG---IADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADT 109
Query: 54 DNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
D D ++ + G + +D +
Sbjct: 110 DGDGAVTVADTARALT-AFGVPEDLARQA------AAALDTD 144
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 53.0 bits (127), Expect = 2e-09
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G++ EL+ +M LG T + MI+E D D D ++++ E
Sbjct: 394 FDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 442
Score = 45.7 bits (108), Expect = 7e-07
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D DG + +EL +M LG T L+ MI EVD D + I F E + K+
Sbjct: 321 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD 380
Query: 75 TDS 77
TDS
Sbjct: 381 TDS 383
Score = 31.8 bits (72), Expect = 0.037
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 7 QLLDNTTRYDDGRDGFLDLEELKRMM-EKLGAPQTHLGLKAMIKEVDEDNDNKISFREIT 65
+L D D +G +D E MM K+ + ++ + D+D + IS E+
Sbjct: 349 ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR 408
Query: 66 H 66
H
Sbjct: 409 H 409
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 50.3 bits (121), Expect = 2e-09
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D GF++ EELK +++ A L KA +K D+D D KI E
Sbjct: 51 IDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 52.9 bits (127), Expect = 2e-09
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQ-THLGLKAMIKEVDEDNDNKI 59
+ L L D + G L EE+++++E P+ + VD D+ +
Sbjct: 248 LGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSL 307
Query: 60 SFRE 63
S++E
Sbjct: 308 SYQE 311
Score = 49.4 bits (118), Expect = 3e-08
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D +G L +E + +LG + + A+ + DED + + F E
Sbjct: 197 IDTNSNGTLSRKEFREHFVRLGFDKKSV-QDALFRYADEDESDDVGFSE 244
Score = 46.0 bits (109), Expect = 5e-07
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G ++LK+++ K LK + V+ D ++S+
Sbjct: 130 SSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYIT 179
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 49.9 bits (120), Expect = 2e-09
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG + EL ++ LG+ T ++ M+ E+D D D ISF E
Sbjct: 20 FDTNGDGKISSSELGDALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDE 67
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG-LKAMIKEVDEDNDNKISFRE 63
D + +D EE KR + KL A + A+ KE+D++ ++F E
Sbjct: 139 IDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDE 188
Score = 31.8 bits (72), Expect = 0.035
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 14 RYDDGRDGFLDLEELKR-MMEKLGAPQTHLGLKAMIK---------EVDEDNDNKISFRE 63
++D G L +E+ +E L + ++ + K +N F E
Sbjct: 56 KFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVE 115
Score = 31.4 bits (71), Expect = 0.045
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPV 79
G D E L L M E+D + + E + ++
Sbjct: 108 KGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRA----VPKLEAWG 163
Query: 80 LAMPKVPGLITTIDKN 95
+ L +DKN
Sbjct: 164 AKVEDPAALFKELDKN 179
Score = 24.9 bits (54), Expect = 9.0
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 44 LKAMIKEVDEDNDNKISFREITH--LRKLKLGSTDSPVLAM 82
+ K+ D++ K+ + E+ L LKL S V +
Sbjct: 50 RIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDI 90
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 50.3 bits (121), Expect = 2e-09
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D + GF++ EELK +++ A L KA++ D D+D KI E
Sbjct: 50 LDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADE 101
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 50.3 bits (121), Expect = 2e-09
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D + GF++ +ELK ++ L KA + + D+D D I E
Sbjct: 51 DQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 49.5 bits (119), Expect = 2e-09
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG + L EL + LG+ + ++ M+ E+D D D I F E
Sbjct: 12 FDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFNE 59
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 51.4 bits (124), Expect = 2e-09
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D G + L+ ++ G T +K M D + ++ I ++
Sbjct: 104 LDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYV 156
Score = 39.9 bits (94), Expect = 3e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D DG +D ++L+ +G + + ++ I+F + KL
Sbjct: 34 IDQNADGIIDKDDLRETFAAMGRLNV---KNEELDAMIKEASGPINFTVFLTMFGEKLKG 90
Query: 75 TDS 77
D
Sbjct: 91 ADP 93
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 51.5 bits (124), Expect = 2e-09
Identities = 11/63 (17%), Positives = 28/63 (44%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
++ F+ + + + D DG LD E++ + G + +A++++ D +
Sbjct: 88 LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLG 147
Query: 61 FRE 63
F +
Sbjct: 148 FDD 150
Score = 46.9 bits (112), Expect = 1e-07
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D G + + EL + G P + + ++ D+++ +I+F E L
Sbjct: 35 AVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDL 88
Score = 30.7 bits (70), Expect = 0.067
Identities = 6/48 (12%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISF 61
++D R G L ++ + + ++ + D + +++F
Sbjct: 137 KFDRQRRGSLGFDDYVELSIFVCR------VRNVFAFYDRERTGQVTF 178
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 51.3 bits (123), Expect = 2e-09
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D D + +E LG +T A +D +ND +S E
Sbjct: 103 VDTNEDNNISRDEYGIFFGMLGLDKTMA--PASFDAIDTNNDGLLSLEEFVIA 153
Score = 35.5 bits (82), Expect = 0.002
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLG-APQTHLGLKAMIKEV----------DEDNDNKISFR 62
R D +DG + + + M E+ + ++ + I
Sbjct: 14 RIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDET 73
Query: 63 EITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ K + + ++ + +P +D N
Sbjct: 74 TFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTN 106
Score = 34.7 bits (80), Expect = 0.003
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKL-----GAPQTHLGLKAMIKEVDEDN 55
+ L + DN G +D M+++ L + VD +
Sbjct: 49 LMDSLTGVWDNFLTAVAG-GKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNE 107
Query: 56 DNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
DN IS E LG + A ID N
Sbjct: 108 DNNISRDEYGIFFG-MLGLDKTMAPAS------FDAIDTN 140
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 49.0 bits (118), Expect = 2e-09
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D + G +D ELK M LG + ++ E D + + I F + + K+ +
Sbjct: 16 FDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIKN 75
Query: 75 TD 76
D
Sbjct: 76 RD 77
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 51.5 bits (124), Expect = 2e-09
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G++ L+E+++ + G H+ MIKE+D+DND +I + E
Sbjct: 91 FDKDGSGYITLDEIQQACKDFGLDDIHI--DDMIKEIDQDNDGQIDYGE 137
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D G + +ELK ++++G+ +K ++ D D I + E
Sbjct: 20 DTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 67
Score = 28.0 bits (63), Expect = 0.63
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAP--------QTHLGLKAMIKEVDEDNDNKISFREITHL 67
D DG +D E MM K + L L+ + VD ++ I H
Sbjct: 126 DQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHH 185
Query: 68 R 68
Sbjct: 186 H 186
Score = 25.6 bits (57), Expect = 4.7
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 43 GLKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
GLK + K +D DN I+F E+ L+++ +S + + + D +
Sbjct: 11 GLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDL------MDAADID 58
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 49.9 bits (120), Expect = 3e-09
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D + GF++ +ELK ++ A L KA +K D D D I E
Sbjct: 51 IDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDE 102
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 49.1 bits (118), Expect = 3e-09
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D G + +ELK ++++G+ +K ++ D D I + E
Sbjct: 32 IDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80
Score = 31.7 bits (73), Expect = 0.012
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGST 75
G +D ++ K M E+L + GLK + K +D DN I+F E+ L+++
Sbjct: 1 HS-SGHIDDDD-KHMAERLSEEEIG-GLKELFKMIDTDNSGTITFDELKDGLKRVGSELM 57
Query: 76 DSPVLAM 82
+S + +
Sbjct: 58 ESEIKDL 64
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.8 bits (117), Expect = 4e-09
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGA------PQTHLGLKAMIKEVDEDNDNKISFRE 63
D DG++ EL+ M L A + +IK D+++D KIS E
Sbjct: 16 LDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEE 70
Score = 25.3 bits (56), Expect = 2.6
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 17 DGRDGFLDLEELKRMMEKL 35
+ DG + EE +L
Sbjct: 61 NS-DGKISKEEFLNANAEL 78
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D DG L EE+ +K G + + + + D + D I+ E
Sbjct: 84 MDVDGDGKLTKEEVTSFFKKHGIEK----VAEQVMKADANGDGYITLEE 128
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG + EE+K + K A + L+ + K +D D + +I E
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
Score = 27.1 bits (61), Expect = 0.99
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 44 LKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+A+ KE+D + D +S+ E+ + K + + + + +ID +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI------FKSIDAD 48
Score = 25.2 bits (56), Expect = 4.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 17 DGRDGFLDLEELKRMM---EKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKL 70
DG +G +D E + + +GLK + K +D D D K++ E+T +K
Sbjct: 48 DG-NGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKH 104
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 49.2 bits (118), Expect = 4e-09
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D+ + G+LD +ELK ++K + L K+++ D D D KI E
Sbjct: 50 IDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADE 101
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 49.8 bits (120), Expect = 5e-09
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D+ GF+ + L+ ++ +G T + M +E D ++ E
Sbjct: 85 FDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVE 133
Score = 37.9 bits (89), Expect = 2e-04
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D RDGF+D E+L M+ +G T ++ + + I+F + KL
Sbjct: 16 IDQNRDGFIDKEDLHDMLASMGKNPT----DEYLEGMMSEAPGPINFTMFLTMFGEKLNG 71
Query: 75 TDS 77
TD
Sbjct: 72 TDP 74
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 49.8 bits (120), Expect = 6e-09
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D +G + EL++++ LG T ++ ++KEV D I++
Sbjct: 85 LDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYES 133
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
+D DG + +EEL + LG T+ L + +++ + +F+ +
Sbjct: 14 FDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTV 63
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 49.9 bits (120), Expect = 6e-09
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + + +L+ M+ LG T + ++K V+ D++ +I +++
Sbjct: 92 FDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKK 140
Score = 39.5 bits (93), Expect = 4e-05
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIK-EVDEDNDNKISFREITHLRKLKLG 73
+D G + + L + +G T+ ++ +I + + + ++ +IT L ++
Sbjct: 13 FDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEK 72
Query: 74 STDSPVLAMPK 84
D+ A +
Sbjct: 73 ELDATTKAKTE 83
Score = 27.6 bits (62), Expect = 0.89
Identities = 8/71 (11%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKL--GAPQTHLGLKAMIKEV----DEDN 55
N ++ +++ L L+++ ++E T + D+++
Sbjct: 39 NQLVQDIINA--DSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKES 96
Query: 56 DNKISFREITH 66
K+S ++ +
Sbjct: 97 TGKVSVGDLRY 107
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 49.9 bits (120), Expect = 6e-09
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 15 YDDGRDGFLDLEELKRMM-----EKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
YD +DG++ EL +++ L Q + I D+D D +ISF E
Sbjct: 84 YDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEE 137
Score = 41.4 bits (98), Expect = 9e-06
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D G L +EE + E P ++ +I D D + ++ F+E
Sbjct: 16 DLDNSGSLSVEEFMSLPELQQNPL----VQRVIDIFDTDGNGEVDFKE 59
Score = 25.3 bits (56), Expect = 5.9
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 5 LRQLLDNTTR-YDDGRDGFLDLEELKRMMEKL 35
L+Q++D T D DG + EE ++ L
Sbjct: 114 LQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 49.4 bits (119), Expect = 8e-09
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D R GF+ E L+ ++++ G M E D + KI F E + ++
Sbjct: 15 FDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQ 74
Query: 75 TDS 77
T S
Sbjct: 75 TTS 77
Score = 45.2 bits (108), Expect = 3e-07
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G++ L+ + LG + + + +I +
Sbjct: 88 FDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDN 135
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 49.9 bits (120), Expect = 9e-09
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG-----LKAMIKEVDEDNDNKISFRE 63
+D DG + EL ++ +K MI++VD++ND KI F E
Sbjct: 131 FDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHE 184
Score = 45.3 bits (108), Expect = 5e-07
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D+ G++ E+LK+ +EK G + ++ ++D D KI + E
Sbjct: 61 LDEDGKGYITKEQLKKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYTE 108
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 48.9 bits (117), Expect = 1e-08
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQ-THLGLKAMIKEVDEDNDNKISFRE 63
D + E L+R LG + + M++E D D D ++ E
Sbjct: 49 LADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTE 98
Score = 32.3 bits (74), Expect = 0.015
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 44 LKAMIKEVDEDNDNKISFREITHLRKLKLGSTDS 77
K+M+ E + + ++ + K+ +
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEF 38
Score = 31.9 bits (73), Expect = 0.019
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMM-EKLGAPQTHLGLKAMIKEVDEDNDNKI 59
M + +L E++ +M EK+ + L + + + I
Sbjct: 1 MEPTEKSMLL---ETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLI 57
Query: 60 SFREITH 66
+ +
Sbjct: 58 TAESLRR 64
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 48.0 bits (115), Expect = 1e-08
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D+ + GF++ +ELK +++ + L K + D D D KI E
Sbjct: 50 LDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEE 101
Score = 24.5 bits (54), Expect = 7.8
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGS---T 75
++ ++ ++ LK + + +D D I E+ + L++ + G+ T
Sbjct: 21 PDSFSPKKFFQISGMSK--KSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLT 78
Query: 76 DSPVLAM 82
S
Sbjct: 79 ASETKTF 85
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 46.8 bits (112), Expect = 1e-08
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D DG + EE+K + K A + L+ + K +D D + +I E
Sbjct: 8 EIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 47.9 bits (114), Expect = 2e-08
Identities = 5/49 (10%), Positives = 18/49 (36%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D + + EE + + + T + E+ + ++ + +
Sbjct: 33 FDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Score = 26.3 bits (58), Expect = 1.6
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 8/73 (10%)
Query: 24 DLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAM 82
++ + K + + + D N IS E + TD +
Sbjct: 7 ADRDILARLHKAVT-SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65
Query: 83 PKVPGLITTIDKN 95
+ N
Sbjct: 66 ------WNEMPVN 72
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 47.7 bits (114), Expect = 2e-08
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
D + GF++ +EL +++ + L K ++ D+D D KI E
Sbjct: 50 LDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Score = 26.1 bits (58), Expect = 2.1
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLG 73
D ++ +M+ ++ +K + +D+D I E+ L+
Sbjct: 21 ADSFDHKKFFQMVGL--KKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSD 73
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 48.8 bits (116), Expect = 3e-08
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D DG +DLEE + + + A+ + + L L S
Sbjct: 114 MDVSGDGIVDLEEFQNYCKNFQLQCADV--PAVYNVITDGGKVTFDLNRYKELYYRLLTS 171
Query: 75 TDS 77
+
Sbjct: 172 PAA 174
Score = 35.3 bits (81), Expect = 0.002
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG---------LKAMIKEVDEDNDNKISFREI 64
R D +D + EE M EK A + + + K +D D + E
Sbjct: 68 RADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEF 127
Query: 65 THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ K + V A+ I
Sbjct: 128 QNYCK-NFQLQCADVPAV------YNVITDG 151
Score = 31.8 bits (72), Expect = 0.028
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGA--------PQTHLGLKAM-------IKEVDEDNDNKI 59
D DG + + + MM + ++ D + D+ +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 60 SFREITHLRKLKLGSTDSP 78
S+ E + + + + S
Sbjct: 78 SWEEYLAMWEKTIATCKSV 96
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 48.6 bits (116), Expect = 3e-08
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 15 YDDGRDGFLDLEELKRMM-----EKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
YD RDG + E+ +++ ++ Q ++E DED D +SF E
Sbjct: 123 YDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE 176
Score = 39.7 bits (93), Expect = 5e-05
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D + G+L +L+++ P +I+ D ++ F
Sbjct: 39 DRNKKGYLSRMDLQQIGALAVNPL----GDRIIESFFPDGSQRVDFPG 82
Score = 25.1 bits (55), Expect = 6.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 5 LRQLLDNTTR-YDDGRDGFLDLEELKRMMEK 34
L + D T + D+ DG + E + +EK
Sbjct: 153 LENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 48.7 bits (116), Expect = 3e-08
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D D +D E + G P++ A + + ++ L
Sbjct: 118 NDTSGDNIIDKHEYSTVYMSYGIPKSD--CDAAFDTLSDGGKTMVTREIFARL 168
Score = 39.1 bits (91), Expect = 8e-05
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG---------------LKAMIKEVDEDNDNKI 59
YD DG ++ ++ + ++K+ + + K DE+ D ++
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQV 81
Query: 60 SFREITHLRKLKLGSTDSP 78
+ E + + S +
Sbjct: 82 TKEEWLKMWAECVKSVEKG 100
Score = 35.6 bits (82), Expect = 0.001
Identities = 16/104 (15%), Positives = 25/104 (24%), Gaps = 19/104 (18%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQT---------HLGLKAMIKEV 51
+ L D+ D + EE +M + + M
Sbjct: 62 LKLIWDGLRK---YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVN 118
Query: 52 DEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
D DN I E + + G S A T+
Sbjct: 119 DTSGDNIIDKHEYSTVYM-SYGIPKSDCDAA------FDTLSDG 155
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 48.4 bits (116), Expect = 3e-08
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 16 DDGRDGFLDLEELKRMMEK--LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D +G + +EELKR+ + + P + ++++EVD + D +I F E
Sbjct: 139 DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHE 188
Score = 48.0 bits (115), Expect = 5e-08
Identities = 8/59 (13%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE----ITHLRKL 70
D G L +E+ ++K+G + + +++++D + +I + + +
Sbjct: 67 DVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTY 125
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 43 GLKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
L+ + +D DN +S +EI L+K+ + + + ID N
Sbjct: 58 NLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQV------LRDIDSN 105
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 49.3 bits (118), Expect = 3e-08
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + +EL ++ + + L+++I++VD + D ++ F E
Sbjct: 426 FDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNE 474
Score = 30.8 bits (70), Expect = 0.10
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLG--------------LKAMIKE 50
+QL + + D DG LD +EL R + + + +++
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Query: 51 VDEDNDNKISFREI----THLRKL 70
+D D I + E L
Sbjct: 390 LDMDGSGSIEYSEFIASAIDRTIL 413
Score = 27.3 bits (61), Expect = 1.4
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 28 LKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLKLGSTDSPVLAMPKVP 86
L M KL L + +++D +ND + E+ + +
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 87 GLITTIDKNLYSFFDC 102
I +L D
Sbjct: 377 STIEDQIDSLMPLLDM 392
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D DG + ELK ++ +G T + M++EV D +I+ ++
Sbjct: 93 FDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQ 140
Score = 46.3 bits (111), Expect = 1e-07
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+D G + EL +M LG + + ++ E+D D ++ I F E L +L
Sbjct: 20 FDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKC 79
Query: 75 TDS 77
DS
Sbjct: 80 NDS 82
Score = 24.3 bits (54), Expect = 9.7
Identities = 4/19 (21%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 16 DDGRDGFLDLEELKRMMEK 34
DG G +++++ ++ K
Sbjct: 130 SDG-SGEINIKQFAALLSK 147
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 48.7 bits (116), Expect = 5e-08
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG--------LKAMIKEVDEDNDNKISFREITH 66
YD GF++ EELK ++ L M+K D +ND K+ E+
Sbjct: 112 YDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMAR 171
Query: 67 LRKLK 71
L ++
Sbjct: 172 LLPVQ 176
Score = 43.3 bits (102), Expect = 4e-06
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG------LKAMIKEVDEDNDNKISFRE 63
+D G+L+ +EL+ ++++L + G +K + + + +D KI E
Sbjct: 24 HFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVE 79
Score = 42.9 bits (101), Expect = 5e-06
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKE-----VDEDNDNKISFRE 63
YD +G++D EL +++ L I + + K+ +
Sbjct: 200 YDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTD 253
Score = 33.7 bits (77), Expect = 0.008
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 15 YDDGRDGFLDLEELKRMMEK--------LGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66
+D DG L+L E+ R++ G + D+D + I E+
Sbjct: 156 FDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDA 215
Query: 67 L 67
L
Sbjct: 216 L 216
Score = 31.0 bits (70), Expect = 0.068
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV---------DEDNDNKISFREIT 65
Y DG + + EL ++ + + D D+ I E+
Sbjct: 67 YGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELK 126
Query: 66 H-LRKL--KLGSTDSPVLAMPKVPGLITTIDKN 95
+ L+ L K T ++ D N
Sbjct: 127 NFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSN 159
Score = 26.8 bits (59), Expect = 1.9
Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 44 LKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
+ D D + +E+ +++L + + P++ + +
Sbjct: 18 FFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR 70
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 47.4 bits (113), Expect = 2e-07
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D + G + EEL + + ++ E D++ DN I F E
Sbjct: 444 FDTDKSGKITKEELANLFGLTSISEKTW--NDVLGEADQNKDNMIDFDE 490
Score = 33.9 bits (78), Expect = 0.007
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLG--------LKAMIKEVDEDND 56
++L D + D DG LD +EL L + LG + ++KEVD D +
Sbjct: 354 RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKN 413
Query: 57 NKISFREI----THLRKL 70
I + E + L
Sbjct: 414 GYIEYSEFISVCMDKQIL 431
Score = 30.4 bits (69), Expect = 0.13
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 28 LKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKLK--LGSTDSPVLAMPK 84
+ + KL + L + K++D++ D ++ +E+ L+ +
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 85 VPGLITTIDKN 95
V ++ +D +
Sbjct: 401 VDNILKEVDFD 411
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 47.0 bits (112), Expect = 2e-07
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE-ITHLRKL 70
+D G + EL + K+++ EVD++ND ++ F E L KL
Sbjct: 427 FDSDNSGKISSTELATIFGVSDVDSETW--KSVLSEVDKNNDGEVDFDEFQQMLLKL 481
Score = 30.8 bits (70), Expect = 0.088
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLG-----------LKAMIKEVDE 53
++L + D DG LD EL ++L + + ++ VD
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDF 393
Query: 54 DNDNKISFREI----THLRKL 70
D + I + E + L
Sbjct: 394 DKNGYIEYSEFVTVAMDRKTL 414
Score = 29.7 bits (67), Expect = 0.21
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 28 LKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI------THLRKLKLGSTDSPVLA 81
L M KL + L A+ ++D++ D ++ E+ K + S
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 82 MPKVPGLITTIDKN 95
+V ++ +D +
Sbjct: 381 EHEVDQVLDAVDFD 394
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D G + EEL R+ +++E D++ND ++ F E
Sbjct: 133 DSDGSGKITNEELGRLFGVTEVDDETW--HQVLQECDKNNDGEVDFEE 178
Score = 37.7 bits (88), Expect = 2e-04
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLG-----------LKAMIKEVDEDNDNKISFRE 63
D+ DG LD +EL KL + + +++ VD D + I + E
Sbjct: 50 DNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSE 108
Score = 26.1 bits (58), Expect = 3.1
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 28 LKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
+ M KL + L + +++D + D ++ +E+
Sbjct: 26 MLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKEL 62
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 46.2 bits (110), Expect = 3e-07
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D LD +E ++ + KLG + + ++ D + + E
Sbjct: 47 DRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEE 94
Score = 44.3 bits (105), Expect = 1e-06
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG-------LKAMIKEVDE-DNDNKISFRE 63
D DG + +++L+ + P+ G L+ + D + D +++ E
Sbjct: 118 LDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAE 174
Score = 30.4 bits (69), Expect = 0.088
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 25 LEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMP 83
+E+L+ GA GL +++D D + E L KL L + +
Sbjct: 21 MEKLRAQCLSRGASGIQ-GLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGV- 78
Query: 84 KVPGLITTIDKN 95
D+N
Sbjct: 79 -----CRKWDRN 85
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
+G G LDLEE R + + + A ++D D ++ ++
Sbjct: 85 NG-SGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL 131
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 45.9 bits (109), Expect = 3e-07
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
D R G L++ EL G + M++ D D + ISF E +
Sbjct: 59 GVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
Score = 39.4 bits (92), Expect = 9e-05
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
M F+ + R G L+ E+ +++LG + ++ +
Sbjct: 112 MYKFMELAYNLFVMNARARSGTLEPHEILPALQQLG-FYINQRTSLLLHRLFARGMAFCD 170
Query: 61 FRE 63
Sbjct: 171 LNC 173
Score = 28.6 bits (64), Expect = 0.38
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
+D +G + E M + + + + EI
Sbjct: 96 FDTDFNGHISFYEFMAMYKFMEL------AYNLFVMNARARSGTLEPHEI 139
Score = 25.1 bits (55), Expect = 6.8
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 38 PQTHLGLKAMIKEVDEDNDNKISFRE 63
+ + VD D + E
Sbjct: 47 LDQYTRIYQWFMGVDRDRSGTLEINE 72
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 45.3 bits (108), Expect = 3e-07
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+ ++ + YD G +D ELK+ + G + +I++ D +I+
Sbjct: 69 VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIA 128
Query: 61 FRE 63
F +
Sbjct: 129 FDD 131
Score = 40.3 bits (95), Expect = 2e-05
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG---LKAMIKEVDEDNDNKISFRE 63
R D R G + EL++ + T ++++I D +N ++F E
Sbjct: 15 RVDKDRSGVISDTELQQALSNGT--WTPFNPVTVRSIISMFDRENKAGVNFSE 65
Score = 26.4 bits (59), Expect = 1.9
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH 66
+D ++ E + + + + + + D DN I E+
Sbjct: 53 FDRENKAGVNFSEFTGVWKYITD------WQNVFRTYDRDNSGMIDKNELKQ 98
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 45.2 bits (108), Expect = 3e-07
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
+D+ L++E +K ++E +G ++ KE + K + + T +
Sbjct: 96 FDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAM 147
Score = 40.2 bits (95), Expect = 2e-05
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D RDGF+ E++K + E+LG L AM+KE ++F + KL
Sbjct: 27 IDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEA----PGPLNFTMFLSIFSDKLSG 82
Query: 75 TDS 77
TDS
Sbjct: 83 TDS 85
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 46.2 bits (110), Expect = 4e-07
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G + ++EL + K MI +D +ND + F E
Sbjct: 435 FDQDGNGKISVDELASVFGLDHLESKTW--KEMISGIDSNNDGDVDFEE 481
Score = 32.4 bits (74), Expect = 0.024
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLG--------LKAMIKEVDEDNDNKISFREI--- 64
D DG LD +EL KL + + + A++ D D + I + E
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV 415
Query: 65 -THLRKL 70
+ L
Sbjct: 416 AMDRKSL 422
Score = 30.8 bits (70), Expect = 0.082
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 28 LKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITH-LRKL--KLGSTDSPVLAMPK 84
L M KL + + L + + +D++ D ++ +E+ KL + + +
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 85 VPGLITTIDKN 95
V ++ D +
Sbjct: 392 VDAILGAADFD 402
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 45.6 bits (108), Expect = 5e-07
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE-ITHLRKLKLGS 74
++ G L + E KR + + ++AM + D + DN I F E + L + G+
Sbjct: 33 EECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGT 92
Query: 75 TD 76
+
Sbjct: 93 LE 94
Score = 37.5 bits (87), Expect = 3e-04
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 17/66 (25%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKA-----------------MIKEVDEDNDN 57
YD R+G +D +EL ++E + + ++ + VDE+ D
Sbjct: 104 YDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDG 163
Query: 58 KISFRE 63
++S E
Sbjct: 164 QLSLNE 169
Score = 25.9 bits (57), Expect = 3.4
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK 69
D D +D E + + LK K D+D + I +E+ + +
Sbjct: 69 DTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVE 122
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 44.5 bits (106), Expect = 5e-07
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G + EL+ ++ LG T ++ ++ ED++ I++
Sbjct: 96 FDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEA 143
Score = 36.0 bits (84), Expect = 9e-04
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDN--KISFRE 63
+D DG + + +M LG T+ + ++ D ++ F
Sbjct: 19 FDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFET 69
Score = 28.7 bits (65), Expect = 0.34
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDN 57
NA + ++L + D+ + +D E M++ + + G E D++ +
Sbjct: 45 NAEVLKVL-GNPKSDELKSRRVDFETFLPMLQAVAKNRGQ-GTYEDYLEGFRVFDKEGNG 102
Query: 58 KISFREITHL 67
K+ E+ H+
Sbjct: 103 KVMGAELRHV 112
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 45.8 bits (108), Expect = 5e-07
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTH--------LGLKAMIKEVDEDNDNKISFREITH 66
YD R G L+ E+ ++ + + ++ D + D KI E+
Sbjct: 205 YDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELAL 264
Query: 67 LRKLK 71
LK
Sbjct: 265 CLGLK 269
Score = 43.1 bits (101), Expect = 4e-06
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG--------LKAMIKEVDEDNDNKISFREIT 65
+YD G++ ELK ++ L AM+K D++ D ++ ++
Sbjct: 112 KYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLA 171
Query: 66 HLRKLK 71
+ L+
Sbjct: 172 RILALQ 177
Score = 35.8 bits (82), Expect = 0.001
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG----------LKAMIKEVDEDNDNKISFRE 63
+D +G+++ +EL + K+ + D D ++ E
Sbjct: 19 HFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEE 78
Score = 30.0 bits (67), Expect = 0.14
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 15 YDDGRDGFLDLEELKRMM------------EKLGAPQTHLGLKAMIKEVDEDNDNKISFR 62
+D +DG LDL +L R++ + + + + D +
Sbjct: 157 FDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGP 216
Query: 63 EITHLRK 69
E+ K
Sbjct: 217 EVDGFVK 223
Score = 27.7 bits (61), Expect = 1.00
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 13 TRYDDGRDGFLDLEELKRMM-----------EKLGAPQTHLGLKAMIKEVDEDNDNKISF 61
+ YD DG L +EEL M+ + + + ++ D D+ IS
Sbjct: 64 SAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISA 123
Query: 62 REITH-LRKL--KLGSTDSPVLAMPKVPGLITTIDKN 95
E+ + L+ L + P ++ DKN
Sbjct: 124 AELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKN 160
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVD--EDNDNKISFRE 63
+D GF+ EL+ ++ LG + + +IK D ED + + + +
Sbjct: 93 FDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYED 143
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DGRDG +D +L + LG + + + + + + F E
Sbjct: 21 WDGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEKSLPFEE 67
Score = 27.9 bits (63), Expect = 0.56
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITH-LRK 69
+ L EE E L + G A E D + IS E+ H L
Sbjct: 55 THKMGEKSLPFEEFLPAYEGLMDCEQ--GTFADYMEAFKTFDREGQGFISGAELRHVLTA 112
Query: 70 L 70
L
Sbjct: 113 L 113
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 44.4 bits (105), Expect = 1e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 15 YDDGRDGFLDLEELKRMM-----EKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
YD +D + +EL +++ + Q I+E D+D D+ ISF E
Sbjct: 122 YDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE 175
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D G +G L E+ +R+ E P +I + +++++FR
Sbjct: 39 DKGENGTLSREDFQRIPELAINPLGDR----IINAFFSEGEDQVNFRG 82
Score = 27.0 bits (60), Expect = 1.4
Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV--------- 51
+N ++++ + + ++ R + + + K +
Sbjct: 59 INPLGDRIIN---AFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKL 115
Query: 52 -------DEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKN 95
D D D+KIS E+ + ++ +G S I D++
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQD 166
Score = 25.5 bits (56), Expect = 5.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 5 LRQLLDNTTR-YDDGRDGFLDLEELKRMMEK 34
L + D T + D D + E +++EK
Sbjct: 152 LGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVD--EDNDNKISFRE 63
+D G + E++ +++ LG T + D ED D I + +
Sbjct: 94 FDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYED 144
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL--RKLKLG 73
DGRDG +D ++ ++ LG T + + + EI +
Sbjct: 21 WDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLEEILPIYEEMSSKD 79
Query: 74 STDS 77
+ +
Sbjct: 80 TGTA 83
Score = 27.9 bits (63), Expect = 0.62
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDNKISFREITHL 67
+ LEE+ + E++ + T E D + IS EI ++
Sbjct: 55 TKKMGEKAYKLEEILPIYEEMSSKDTG-TAADEFMEAFKTFDREGQGLISSAEIRNV 110
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 43.3 bits (103), Expect = 2e-06
Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D+ GF+ + LK ++E +G + +K + K+ + + ++ +
Sbjct: 94 FDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNK 141
Score = 39.4 bits (93), Expect = 4e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
D RDGF+ +E+LK M LG L AM+KE +++F L K+
Sbjct: 25 IDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLNFTAFLTLFGEKVSG 80
Query: 75 TDS 77
TD
Sbjct: 81 TDP 83
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 41.7 bits (98), Expect = 3e-06
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G G+L E+L+ +MEK L + L + ++K++D+ D K+ F+
Sbjct: 19 AGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQS 70
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 43.1 bits (102), Expect = 3e-06
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D +G L E+ ++ +G + +++ +D ++ I++ E
Sbjct: 49 DTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTE 94
Score = 40.7 bits (96), Expect = 2e-05
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDND--------NKISFRE 63
D DG++ ++ ++ + V NKISF+E
Sbjct: 117 IDKDEDGYISKSDIVSLVHDKVLDNNDI--DNFFLSVHSIKKGIPREHIINKISFQE 171
Score = 26.1 bits (58), Expect = 2.5
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 28 LKRMMEKLGAPQTHL-GLKAMIKEVDEDNDNKISFREI-THLRKLKLGSTDSPVLAMPKV 85
+ M +L H+ + + ++D +++ +S REI T L +G + +
Sbjct: 24 INIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLA--SVGIKKWDINRI--- 78
Query: 86 PGLITTIDKN 95
+ +D N
Sbjct: 79 ---LQALDIN 85
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 43.3 bits (102), Expect = 3e-06
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKA---------MIKEVDEDNDNKISFREIT 65
+D DG L+ E+L R++ L L A +++E D D D I+ E
Sbjct: 138 FDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ 197
Query: 66 HL 67
H+
Sbjct: 198 HV 199
Score = 28.3 bits (63), Expect = 0.61
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMI--KEVDEDNDNKISFREITHLRKLKLG 73
L E+ ++ + +K+ + D D+D ++ +++ L G
Sbjct: 102 TSPAKDSLSFEDFLDLLSVF-SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTG 160
Query: 74 STDSPVL 80
+ L
Sbjct: 161 EGEDTRL 167
Score = 25.2 bits (55), Expect = 5.6
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 5 LRQLLDNTTR-YDDGRDGFLDLEELKRMMEK 34
++QL+DN D RDG ++L E + ++ +
Sbjct: 172 MKQLIDNILEESDIDRDGTINLSEFQHVISR 202
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 42.5 bits (101), Expect = 3e-06
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + + ++ G T A I E++ ++ +
Sbjct: 14 FDRHGTGRIPKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQ 58
Score = 41.7 bits (99), Expect = 5e-06
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G + + EL+ ++ LG ++ + ++K V D +++ +
Sbjct: 85 FDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP-VKDGMVNYHD 132
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 42.1 bits (99), Expect = 6e-06
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLK---------AMIKEVDEDNDNKISFRE 63
+D DG L+ E+L R++ L L +++E D D D I+ E
Sbjct: 107 FDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 164
Score = 25.9 bits (57), Expect = 3.6
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMI--KEVDEDNDNKISFREITHLRKLKLG 73
L E+ ++ + +K+ + D D+D ++ +++ L G
Sbjct: 71 TSPAKDSLSFEDFLDLLSVF-SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTG 129
Query: 74 STDSPVL 80
+ L
Sbjct: 130 EGEDTRL 136
Score = 25.1 bits (55), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 5 LRQLLDNT-TRYDDGRDGFLDLEELKRMMEK 34
++QL+DN D RDG ++L E + ++ +
Sbjct: 141 MKQLIDNILEESDIDRDGTINLSEFQHVISR 171
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D +G + EL+ ++ LG T ++ ++K ED++ I++
Sbjct: 94 FDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEA 141
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDN--KISFREITHLRKLKL 72
+D D + ++ + LG T+ + ++ ++ N I+F E + +
Sbjct: 17 FDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAAA 76
Query: 73 GSTD 76
+ D
Sbjct: 77 NNKD 80
Score = 26.3 bits (59), Expect = 2.0
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEV----DEDNDN 57
NA + ++L N ++ ++ + EE M++ A G E D++ +
Sbjct: 43 NAEINKILGNPSK-EEMNAAAITFEEFLPMLQAA-ANNKDQGTFEDFVEGLRVFDKEGNG 100
Query: 58 KISFREITHL 67
+ E+ H+
Sbjct: 101 TVMGAELRHV 110
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY,
metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8
PDB: 2jc2_A
Length = 198
Score = 42.1 bits (99), Expect = 7e-06
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGL-----KAMIKEVDEDNDNKISFREITHL 67
G+DG +D +EL+R + + G + + M+ +D D + F E L
Sbjct: 42 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKEL 98
Score = 34.4 bits (79), Expect = 0.004
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+ A L + +D R G +D +EL++ + +G + + ++ K + KI+
Sbjct: 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKIT 155
Query: 61 FRE 63
F +
Sbjct: 156 FDD 158
Score = 27.4 bits (61), Expect = 1.1
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
D G + E K + L G + D D + +E+
Sbjct: 82 LDRDMSGTMGFNEFKELWAVL------NGWRQHFISFDTDRSGTVDPQEL 125
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 42.3 bits (100), Expect = 1e-05
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+N + + D + + + ++ G P+T ++ V D K
Sbjct: 385 LNPHIHLMGDE--------SACIAYIRITQYLDAGGIPRTA---QSEETRVWHRRDGKWQ 433
Query: 61 F 61
Sbjct: 434 I 434
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 41.7 bits (98), Expect = 1e-05
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGA------PQTHLGLKAMIKEVDEDNDNKISFRE 63
YD +G +D EL M + A + + ++D +ND +++ E
Sbjct: 102 YDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEE 156
Score = 35.9 bits (83), Expect = 0.001
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 20 DGFLDLEELKRMMEKLGA-PQTHLGLKAMIKEVDEDNDNKISFRE-ITHLRKLKLGSTD 76
G L E K ++ G + + + + D + D + F E I + + +
Sbjct: 34 SGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKME 92
Score = 25.1 bits (55), Expect = 6.6
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
D DG L LEE M K L L+ + K D N ++
Sbjct: 145 DINNDGELTLEEFINGMAK----DQDL-LEIVYKSFDFSNVLRVICNG 187
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 40.2 bits (94), Expect = 1e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L+ ELK ++ + LG + ++ +D + DN++ F+E
Sbjct: 22 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQE 74
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 41.0 bits (97), Expect = 1e-05
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGS 74
+ G + ++ KLG + K++ E + +++ + + +
Sbjct: 24 NEKSSGGKISIDNASYNARKLGLAPS----SIDEKKIKELYGDNLTYEQYLEYLSICVHD 79
Query: 75 TDSP 78
D+
Sbjct: 80 KDNV 83
Score = 40.3 bits (95), Expect = 2e-05
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D+ G+L ++K ++ G T + +++ I ++
Sbjct: 93 FDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKL 139
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 41.3 bits (97), Expect = 1e-05
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAP--------QTHLGLKAMIKEVDEDNDNKISFRE 63
YD + GF++ EELK M+ L + + + D ND KI E
Sbjct: 120 YDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
Score = 31.7 bits (72), Expect = 0.039
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG + EE + + + + + D + I F E
Sbjct: 49 SIIDDGLIHKEEFQLALFRNRNRRNLFA-DRIFDVFDVKRNGVIEFGE 95
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 41.8 bits (97), Expect = 2e-05
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 6 RQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREIT 65
+ + D +D ++ +ELK +++L + + +E D + + EI
Sbjct: 11 HWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIE 70
Query: 66 HL-RKLK 71
+ L
Sbjct: 71 TFYKMLT 77
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 39.5 bits (92), Expect = 3e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L+ ELK ++ + LG + ++ +D + DN++ F+E
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQE 86
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 39.7 bits (93), Expect = 4e-05
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGL-----KAMIKEVDEDNDNKISFREITHL 67
G+DG +D EEL+R + + G T+ + MI +D D+ K+ F L
Sbjct: 9 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKEL 65
Score = 32.7 bits (75), Expect = 0.012
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+ A L +N D G ++ EL++ + +G + L ++K + + +I
Sbjct: 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--NGRIF 122
Query: 61 F 61
F
Sbjct: 123 F 123
Score = 24.6 bits (54), Expect = 7.7
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
D G + K + L K VD+D + E+
Sbjct: 49 LDRDHTGKMGFNAFKELWAAL------NAWKENFMTVDQDGSGTVEHHEL 92
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 38.1 bits (89), Expect = 4e-05
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTH--LGLKAMIKEVDEDNDNKISFRE 63
+G L EELK++++ L + +E+D++ D ++SF E
Sbjct: 19 KEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEE 68
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 39.8 bits (93), Expect = 5e-05
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 15 YDDGRDGFLDLEELKRMMEKL----GAPQTHLGLKA----MIKEVDEDNDNKISFRE 63
YD + GF++ +E+K+M+ G ++ +E D +D KI E
Sbjct: 131 YDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
Score = 29.4 bits (66), Expect = 0.26
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG ++ EE + + K ++ + D ++ + F E
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKKESLFA-DRVFDLFDTKHNGILGFEE 106
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L+ ELK ++ + LG + ++ +D + DN++ F+E
Sbjct: 25 KEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQE 77
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 39.4 bits (92), Expect = 6e-05
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGA---PQTHLGLKA----MIKEVDEDNDNKISFRE 63
YD +G +D EL +++ + A + + + ++D + D ++S E
Sbjct: 97 YDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
Score = 37.4 bits (87), Expect = 3e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 16 DDGRDGFLDLEELKRMMEKLGA-PQTHLGLKAMIKEVDEDNDNKISFRE-ITHLRKLKLG 73
+ G L L E K+ P + ++ M + D + D I F E + L + G
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKG 84
Query: 74 STD 76
D
Sbjct: 85 KVD 87
Score = 26.3 bits (58), Expect = 2.4
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 16 DDGRDGFLDLEELKRMMEK----LGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
D DG L LEE ++K L L L ++K + D N + E
Sbjct: 141 DINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDGKNPHAPEEA 193
Score = 26.3 bits (58), Expect = 2.7
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK--LKLG 73
D +DG++D E + + + L+ K D D + I E+ ++ K +
Sbjct: 62 DFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAIN 121
Query: 74 STDSPVLAMPKVPGLITTIDKN 95
+ + A + ID N
Sbjct: 122 RCNEAMTAEEFTNMVFDKIDIN 143
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 37.8 bits (88), Expect = 7e-05
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L +ELK +++ L + + ++KE+DE+ D ++ F+E
Sbjct: 22 EGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQE 73
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 38.1 bits (89), Expect = 7e-05
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+ D DGF+ E++ + K G P T L + D + K+S +
Sbjct: 18 KTDKDMDGFVSGLEVREIFLKTGLPSTL--LAHIWSLCDTKDCGKLSKDQ 65
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 37.8 bits (88), Expect = 8e-05
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G L ELK+++ K + + + + + +D + D ++ F+E
Sbjct: 24 RKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQE 76
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 38.5 bits (90), Expect = 1e-04
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGL-----KAMIKEVDEDNDNKISFREITHL 67
G+DG +D +EL+R + + G + + M+ +D D + F E L
Sbjct: 12 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKEL 67
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+ A L + +D R G +D +EL++ + +G + ++ K KI+
Sbjct: 67 LWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKIT 124
Query: 61 FRE 63
F +
Sbjct: 125 FDD 127
Score = 25.4 bits (56), Expect = 4.1
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREI 64
D G + E K + L + D D + +E+
Sbjct: 51 LDRDMSGTMGFNEFKELWAVLNG------WRQHFISFDSDRSGTVDPQEL 94
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 37.5 bits (87), Expect = 1e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L ELK +MEK L + + + ++K++D + D ++ F E
Sbjct: 21 SEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSE 73
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 37.1 bits (86), Expect = 2e-04
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG + + E M + L M+K++D D+D ++ F+E
Sbjct: 25 RDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQE 77
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L ELK ++ L + + +++ +D + D + F+E
Sbjct: 22 EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQE 73
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 16 DDGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+ + M++K L +I+ +D ++D +ISF E
Sbjct: 24 YSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDE 76
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 37.1 bits (86), Expect = 2e-04
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 17 DGRDGFLDLEELKRMMEK-LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G + ++LK+++E G KE+D + D ++F+E
Sbjct: 23 KGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQE 70
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 36.7 bits (85), Expect = 2e-04
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L ELK ++ L + + + ++ ++ ++D + DN++ F E
Sbjct: 23 EGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNE 74
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 36.8 bits (85), Expect = 3e-04
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G L ELK +++K + +D + D ++ F E
Sbjct: 23 CGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE 74
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 36.7 bits (85), Expect = 3e-04
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+D G L + + ++ + PQ L ++ D D D K++ E
Sbjct: 23 HDKTMSGHLTGPQARTILMQSSLPQAQL--ASIWNLSDIDQDGKLTAEE 69
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 37.5 bits (87), Expect = 3e-04
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLG------------LKAMIKEVDEDNDNKISFR 62
YD +G++ E+ +++ + + + + + +++D + D K+S
Sbjct: 108 YDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
Query: 63 E 63
E
Sbjct: 168 E 168
Score = 29.4 bits (66), Expect = 0.19
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMI-KEVDEDNDNKISFRE 63
D G L +EE K++ + + D + D I FRE
Sbjct: 35 LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFRE 84
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 37.0 bits (86), Expect = 4e-04
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLG--------LKAMIKEVDEDNDNKISFREITHL 67
G D + EL ++ K+ L ++M+ +D D K+ F E +L
Sbjct: 14 AGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYL 72
Score = 29.7 bits (67), Expect = 0.16
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
+ +++ ++D R G + EL E G +I+ D +
Sbjct: 72 LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIR-RYSDEGGNMD 130
Query: 61 FRE 63
F
Sbjct: 131 FDN 133
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 35.5 bits (82), Expect = 5e-04
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTH--LGLKAMIKEVDEDNDNKISFRE 63
+G L +ELK +++K + ++K +D+++D +I F+E
Sbjct: 22 REGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKE 71
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 37.2 bits (86), Expect = 5e-04
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 15 YDDGRDGFLDLEELKRMME---KLGAPQTHLGLK---------AMIKEVDEDNDNKISFR 62
YD +DG++ EE+ +M+ + T+ LK +++D++ D ++
Sbjct: 147 YDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
Query: 63 E 63
E
Sbjct: 207 E 207
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 35.6 bits (82), Expect = 6e-04
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 17 DGRDGFLDLEELKRMMEK-----LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L E+K ++ K +G GLK ++ +DE++D ++ F+E
Sbjct: 24 EGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQE 75
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 35.6 bits (82), Expect = 7e-04
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 DDGRDGFLDLEELKRMMEK--LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+GR L + E K ++ + + L +K +D + D+++ F E
Sbjct: 34 QEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNE 83
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 36.3 bits (84), Expect = 7e-04
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 15 YDDGRDGFLDLEELKRMME---KLGAPQTHLGL---------KAMIKEVDEDNDNKISFR 62
YD +G + +E+ R+++ K+ L + +D++ D +++
Sbjct: 108 YDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLE 167
Query: 63 E 63
E
Sbjct: 168 E 168
Score = 26.7 bits (59), Expect = 1.7
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 20 DGFLDLEELKRMMEKLGAPQTHLGL-KAMIKEVDEDNDNKISFRE-ITHLRKLKLGSTD 76
G L+ E +++ ++ + + D D + I F+E I L G +
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELN 98
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 36.3 bits (84), Expect = 7e-04
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGA---PQTHLGLK---------AMIKEVDEDNDNKISF 61
YD +DG+++ EE+ +++ + T+ LK +++D++ D ++
Sbjct: 100 LYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 159
Query: 62 REITHLRK 69
E +
Sbjct: 160 DEFLESXQ 167
Score = 27.1 bits (60), Expect = 1.5
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRK 69
+D + G + E+ + L H L+ D + D I+ E+ + K
Sbjct: 65 FDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVK 119
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 36.4 bits (84), Expect = 8e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 15 YDDGRDGFLDLEELKRMME---KLGAPQTHLGLK---------AMIKEVDEDNDNKISFR 62
YD DG++ +E+ ++ K+ L + K +D++ D I+
Sbjct: 108 YDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Query: 63 E 63
E
Sbjct: 168 E 168
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 36.6 bits (84), Expect = 9e-04
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 14 RYDDGRDGFLDLEELKRMME---KLGAPQTHLGLK---------AMIKEVDEDNDNKISF 61
YD +DG + EE+ +M+ + T+ L+ +++D + D ++
Sbjct: 173 LYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTI 232
Query: 62 RE 63
E
Sbjct: 233 DE 234
Score = 25.8 bits (56), Expect = 3.7
Identities = 12/79 (15%), Positives = 26/79 (32%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGST 75
D +G + E+ + L H LK D + D I+ E+ + K
Sbjct: 139 DADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMM 198
Query: 76 DSPVLAMPKVPGLITTIDK 94
+ + + +++
Sbjct: 199 GRHTYPILREDAPLEHVER 217
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 35.1 bits (81), Expect = 9e-04
Identities = 11/50 (22%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 17 DGRDGFLDLEELKRMMEK---LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+G L +ELK +++K +G+ + +++++D + D +++F+E
Sbjct: 23 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQE 72
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 36.0 bits (83), Expect = 0.001
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKA------------MIKEVDEDNDNKISFR 62
YD DG++ E+ +++ + + + +D++ D K++ +
Sbjct: 108 YDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ 167
Query: 63 EITH 66
E
Sbjct: 168 EFQE 171
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 14 RYDDGRDGFLDLEELKRMME---KLGAPQTHLGLK---------AMIKEVDEDNDNKISF 61
YD +DG+++ EE+ +++ + T+ LK +++D++ D ++
Sbjct: 133 LYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTL 192
Query: 62 RE 63
E
Sbjct: 193 DE 194
Score = 26.5 bits (58), Expect = 2.7
Identities = 13/79 (16%), Positives = 24/79 (30%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGST 75
D + G + E+ + L H L+ D + D I+ E+ + K
Sbjct: 99 DTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMM 158
Query: 76 DSPVLAMPKVPGLITTIDK 94
+ K +D
Sbjct: 159 GKYTYPVLKEDTPRQHVDV 177
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 18 GRDGFLDLEELKRMMEK-----LGAPQTH--LGLKAMIKEVDEDNDNKISFRE 63
RD +D L MM++ L A L + ++ D++ D KI F E
Sbjct: 21 RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSE 73
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 16 DDGRDGFLDLEELKRMMEK------LGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
G L+ E K ++ K + ++ +++++D + D ++SF E
Sbjct: 24 KLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEE 77
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 34.9 bits (79), Expect = 0.003
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG+L EL + L P H + D DND I+ E
Sbjct: 167 HPIDGYLSHTELAPLRAPL-IPMEHC-TTRFFETCDLDNDKYIALDE 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.003
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 62 REITHLR-KLKLGSTDS-PVLAM 82
+ + L+ LKL + DS P LA+
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 33.4 bits (76), Expect = 0.008
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAM--------------IKEVDEDNDNKIS 60
YD +G + E+ ++ + T +K + K +++D+K++
Sbjct: 116 YDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLT 175
Query: 61 FRE 63
+E
Sbjct: 176 EKE 178
Score = 26.9 bits (59), Expect = 1.9
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGL-KAMIKEVDEDNDNKISFREIT 65
D G + ++ + + K + + + D + D + F+E
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYV 94
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 33.1 bits (75), Expect = 0.010
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISF 61
+ F Q+ D+ R L +ELK E+L L+ VD++ D +++
Sbjct: 58 DEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTA 117
Query: 62 REITHLRKL 70
E+ + L
Sbjct: 118 EEVKEIIAL 126
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 32.6 bits (74), Expect = 0.012
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAM------------IKEVDEDNDNKISFR 62
+D + LD EL + + + M +++ D++ND I +
Sbjct: 77 HDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYA 136
Query: 63 E 63
E
Sbjct: 137 E 137
Score = 27.2 bits (60), Expect = 0.94
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 25 LEELKRMMEKLGAPQTHLGLKA-MIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMP 83
+E L+ ++ K A + L+ K D D +N + E++ S +
Sbjct: 50 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLM 109
Query: 84 KVPGLITTIDKNL 96
LI ID L
Sbjct: 110 SEDELINIIDGVL 122
Score = 26.9 bits (59), Expect = 1.3
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 5 LRQLLDNTTRYDDG-RDGFLDLEELKRMME 33
L ++D R DD DG++D E + ++
Sbjct: 114 LINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 32.1 bits (72), Expect = 0.020
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
DG+L EL + L + + D DND I+ E
Sbjct: 89 HPIDGYLSHTELAPLRAPLIPMEHC--TTRFFETCDLDNDKYIALDE 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.022
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 36/95 (37%)
Query: 1 MNAFL---RQL---LDNTTRYDDGRDGF------LDLEELKRMMEKLGAPQTHLGLKAMI 48
N+ L +Q+ L N G L L + K AP
Sbjct: 356 TNSHLPAGKQVEISLVN------GAKNLVVSGPPQSLYGLNLTLRKAKAP---------- 399
Query: 49 KEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMP 83
+ ++I F E RKLK + PV + P
Sbjct: 400 ---SGLDQSRIPFSE----RKLKFSNRFLPVAS-P 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.050
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 38/125 (30%)
Query: 6 RQLLDNTTRYDDGRDGFLD---------------LEELKRMMEKLGAPQTHLGLKAMI-- 48
RQ T Y + RD + +L++ + +L P ++ + ++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGS 161
Query: 49 ------------KEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNL 96
+V D KI + L L + +SP + + L+ ID N
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFW--------LNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 97 YSFFD 101
S D
Sbjct: 214 TSRSD 218
Score = 25.6 bits (55), Expect = 5.9
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 30/106 (28%)
Query: 1 MNAFLRQLLDN-TTRYDDGRDGFLDLEE----LKRMMEKLGAPQTHLGLKAMIKEVDEDN 55
+ L Q+ N T+R D + L + L+R+++ L L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------LNVQ 254
Query: 56 DNKISFREITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFD 101
+ K L K+ L+TT K + F
Sbjct: 255 NAKA-------WNAFNLSC---------KI--LLTTRFKQVTDFLS 282
Score = 25.2 bits (54), Expect = 8.8
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 36/122 (29%)
Query: 23 LDLEELKRMMEKLGA-------PQTHLGL--KAMIKEVDED------------NDNKISF 61
L+ E ++M ++L P L L +IK K S
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 62 REITHLRKLKLGSTDSPVLAMPKVPGLITTIDKNLYSFFDCKCFKGLLPDVLVLTQHLNR 121
I L+L A+ + + +D Y+ L+P L
Sbjct: 426 ISI-PSIYLELKVKLENEYALHR-----SIVDH--YNIPKTFDSDDLIPPYL-------D 470
Query: 122 NY 123
Y
Sbjct: 471 QY 472
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.9 bits (66), Expect = 0.20
Identities = 8/59 (13%), Positives = 24/59 (40%)
Query: 5 LRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFRE 63
+ + + +D + G +D E+ + + +G ++ VD + ++F+
Sbjct: 724 MNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQA 782
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 29.1 bits (65), Expect = 0.29
Identities = 5/56 (8%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 18 GRDGFLDLEELKRMMEKLGAPQTHLGL------KAMIKEVDEDNDNKISFREITHL 67
R +D +L+ ++ + + ++++ ++ + ++ E L
Sbjct: 16 PRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARL 71
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 28.8 bits (65), Expect = 0.37
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 15/72 (20%)
Query: 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHL-----------GLK--AMIKE 50
+ +L N Y D + L K K + + ++E
Sbjct: 222 LMGYVLSNMKVYKDYNSALISL--TKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLRE 279
Query: 51 VDEDNDNKISFR 62
E KIS R
Sbjct: 280 DTEKKMIKISLR 291
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.0 bits (62), Expect = 0.47
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 15 YDDGRDGFLDLEELKRMM----EKLGAPQTHLG--------LKAMI----KEVDEDNDNK 58
+D DG LD +EL+ + EK+ P+ M K VD + D
Sbjct: 29 HDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRL 88
Query: 59 ISFRE 63
++ E
Sbjct: 89 VTLEE 93
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; 2.30A {Vibrio
cholerae}
Length = 105
Score = 27.8 bits (62), Expect = 0.56
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG 43
R +G GF + + LK+ + L P+ LG
Sbjct: 60 RKQEG--GFPEAKVLKQRVRDLIDPERDLG 87
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.70A {Streptomyces avermitilis}
Length = 107
Score = 27.0 bits (60), Expect = 0.83
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 9 LDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTHLG 43
+D+ +D GF + +KR++ AP+ LG
Sbjct: 61 VDDEVVWDRREQGFPEPTAVKRLVRDRVAPEKSLG 95
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.1 bits (61), Expect = 0.88
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMM--EKLGAPQTHLGLKAMIKEVDEDNDNKI 59
N FLR+ + +DG + ++ + +M +K + ++
Sbjct: 149 NTFLRKAYTKLKLQVN-QDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEF 207
Query: 60 SFREITHLRK 69
S
Sbjct: 208 SLEIFERFLN 217
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix
bundle, structural genomics, PS protein structure
initiative; 1.90A {Agrobacterium tumefaciens str} SCOP:
c.47.1.23
Length = 105
Score = 27.0 bits (60), Expect = 1.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG 43
R DG GF +ELK+ + L P+ LG
Sbjct: 64 RKRDG--GFPGPKELKQRIRDLIDPERDLG 91
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 1.4
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 15 YDDGRDGF--------LDLEELKRMMEKLGAP 38
R+GF + + + K+G P
Sbjct: 1170 ATTTRNGFMEAQGAGIQIIMQADLAL-KMGVP 1200
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 26.9 bits (60), Expect = 1.6
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 25 LEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKLGSTDSPVLAMPK 84
+E L M + + M+ E + N +K ++ L + S+ + + + K
Sbjct: 265 MEHLAMMESIIQPIPKN-----MLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKK 319
Query: 85 VPGLITTIDKNLYSFFDCKCFK 106
L I L+ F +
Sbjct: 320 CLPLYKIIKHELFCDFLYSILQ 341
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.50A {Pseudomonas aeruginosa}
PDB: 2obk_A
Length = 104
Score = 26.3 bits (58), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 14 RYDDGRDGFLDLEELKRMMEKLGAPQTHLG 43
R DG GF + + LK+ + PQ LG
Sbjct: 62 RKADG--GFPEAKALKQRVRDRIDPQRDLG 89
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 27.0 bits (59), Expect = 1.7
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 17 DGRDGFLDLEELKRMMEKLGAPQTHLGL--------KAMIKEVDEDNDNKISFREITHL 67
G D + EL ++ K+ L ++M+ +D D K+ F E +L
Sbjct: 741 AGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYL 799
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 27.0 bits (59), Expect = 1.9
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 15 YDDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHL 67
YD GR G + + K + L + + K+V + R + L
Sbjct: 141 YDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLL 192
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics,
PSI-2, protein STR initiative, northeast structural
genomics consortium; 2.10A {Bordetella parapertussis}
Length = 108
Score = 25.9 bits (57), Expect = 2.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 9 LDNTTRYDDGRD-GFLDLEELKRMMEKLGAPQTHLG 43
+ +D D GF + + LK+ + P LG
Sbjct: 57 YNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLG 92
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic;
HET: D15; 2.40A {Homo sapiens}
Length = 311
Score = 26.8 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 44 LKAMIKEVDEDNDNKISFREITHLRKLK 71
+K ++ D+ KI+ REI L++LK
Sbjct: 33 IKKFLESEDDPVIKKIALREIRMLKQLK 60
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 26.4 bits (59), Expect = 2.9
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 16 DDGRDGF-LDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDND 56
G DGF LD + + + +E++E
Sbjct: 188 KQGVDGFRLDG--AMHIFPPAQYDKNFTWWEKFRQEIEEVKP 227
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 25.8 bits (57), Expect = 4.1
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 16 DDGRDGFLDLEELKRMMEKLGAPQTHLGLKAMIKEVDEDNDNKISFREITHLRKLKL 72
D+G D + + +++E LG ++L K +++ R I+ L+ L
Sbjct: 238 DEGHSYTKDDDHIAQIIELLGELPSYLLRNG--KYTRTFFNSRGLLRNISKLKFWPL 292
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 25.5 bits (56), Expect = 4.3
Identities = 3/36 (8%), Positives = 18/36 (50%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLG 36
++A + + + ++ ++E + +++++G
Sbjct: 159 ISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIG 194
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT
initiative, RSGI, structural genomics, transferase;
1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Length = 285
Score = 25.6 bits (57), Expect = 4.9
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 2 NAFLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGA 37
N + ++ DG F EEL+ + E LG
Sbjct: 202 NIPWAKAVN-----PDGT--FKSAEELRALYEPLGI 230
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 25.9 bits (57), Expect = 5.0
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 12/48 (25%)
Query: 1 MNAFLRQLLDNTTRYDDGRD--------GFL----DLEELKRMMEKLG 36
R + GF + +KRM+ ++G
Sbjct: 201 FEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMG 248
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 25.6 bits (57), Expect = 5.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 23 LDLEELKRMMEKLGAPQTHL 42
D + ++ LG PQ
Sbjct: 20 GDHRRILTLLHALGNPQQQG 39
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic;
HET: DKI; 1.53A {Homo sapiens}
Length = 331
Score = 25.6 bits (57), Expect = 5.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 44 LKAMIKEVDEDNDNKISFREITHLRKLK 71
+K ++ D+ KI+ REI L++L+
Sbjct: 55 IKKFLESDDDKMVKKIAMREIKLLKQLR 82
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 11/53 (20%)
Query: 1 MNAFLRQLLDNTTRYDDGRDGFL-----------DLEELKRMMEKLGAPQTHL 42
+ A + L+ R + DLE + +E G +
Sbjct: 150 VKAIVETLVPERRDQVGKRPRQVNVLCSANLTPGDLEYIAESIESFGLRPLLI 202
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 25.3 bits (55), Expect = 6.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 1 MNAFLRQLLDNTTRYD 16
+ AFL + D+ TR D
Sbjct: 504 LTAFLHNMGDHVTRLD 519
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 25.0 bits (55), Expect = 7.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 24 DLEELKRMMEKLGAPQTHL 42
D+ E+KR+ E + P
Sbjct: 183 DMREIKRLFEAMDIPYIMF 201
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Length = 177
Score = 24.7 bits (54), Expect = 7.7
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 4 FLRQLLDNTTRYDDGRDGFLDLEELKRMMEKLGAPQTH 41
F+ ++ + G +L+ L M+ P
Sbjct: 111 FIHKIGYTEFEAETGNLLLEELKRLMISMKNQPLPVDR 148
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 25.3 bits (54), Expect = 7.9
Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 3 AFLRQLLDNTTRYDDGRDGFLDLEELKRMM--EKLGAPQTHLGLKAMIKEVDEDNDNKIS 60
FL ++L + +G + ++ +M ++ + D N
Sbjct: 146 TFLDKILVKLKMQLN-SEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFP 204
Query: 61 FREITHLRKL 70
Sbjct: 205 EPVYKSFLMS 214
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 24.7 bits (54), Expect = 9.9
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 1 MNAFLRQLLDNTTRYDDGRD------GFL----DLEELKRMMEKLGAP 38
F + + GF + LKRMME++ P
Sbjct: 199 FEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVP 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.411
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,942,380
Number of extensions: 110715
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 441
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)