BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3152
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LYD|A Chain A, The Solution Structure Of The Dm Dcp1 Evh1 Domain In
Complex With The Xrn1 Dbm Peptide
Length = 134
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 91/125 (72%)
Query: 1 MAKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVES 60
MA + + +N++AI+++DP K++VDS++HVA Y+FN ++EW+KT++EGA F+Y R
Sbjct: 8 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAE 67
Query: 61 PLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDIL 120
P +S+FI NR + + +EP+ L+LQ Q PF+LY+N++ I G WFYN E+C RIS ++
Sbjct: 68 PFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLV 127
Query: 121 QSLVK 125
L+K
Sbjct: 128 NGLLK 132
>pdb|2QKL|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|C Chain C, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|E Chain E, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|G Chain G, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 127
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFIL 68
VN+ ++ P ++ ++D A+HVA+Y F+ +W KT+IEG F+ + + + IL
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARV-GYVIL 69
Query: 69 NRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDIL-QSLVK 125
NRNSPENL + ++ L + +++++ + + G+W ++ D RI +I+ +SL++
Sbjct: 70 NRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR 127
>pdb|1Q67|A Chain A, Crystal Structure Of Dcp1p
pdb|1Q67|B Chain B, Crystal Structure Of Dcp1p
Length = 231
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRR 57
+N + I R DP +K L+ H +LY ++ K EW+K +G L +Y R
Sbjct: 22 LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLR 70
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 71 NSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK 125
N+ E+ L P+ + + +++++ ++ KN + +YGIW + D I ++++ L++
Sbjct: 170 NAEEDTLNPL-ECMGVEVKDELVIIKNLKHEVYGIWIHTVSDRQNIYELIKYLLE 223
>pdb|2WX4|A Chain A, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
pdb|2WX4|B Chain B, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
pdb|2WX4|C Chain C, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
pdb|2WX4|D Chain D, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
pdb|2WX4|E Chain E, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
pdb|2WX4|F Chain F, Asymmetric Trimer Of The Drosophila Melanogaster Dcp1 C-
Terminal Domain
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 365 LTKNQIVQAVSHLLKHDADFVNKLHEAYLN 394
L Q VQA ++L+++D +F NKLH+AYLN
Sbjct: 9 LNSTQFVQAFTYLIQNDKEFANKLHKAYLN 38
>pdb|2WX3|A Chain A, Asymmetric Trimer Of The Human Dcp1a C-Terminal Domain
pdb|2WX3|B Chain B, Asymmetric Trimer Of The Human Dcp1a C-Terminal Domain
pdb|2WX3|C Chain C, Asymmetric Trimer Of The Human Dcp1a C-Terminal Domain
Length = 51
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 365 LTKNQIVQAVSHLLKHDADFVNKLHEAYL 393
L+K+Q+ + HL+K+D+ F++ LHE YL
Sbjct: 11 LSKSQLQDTLIHLIKNDSSFLSTLHEVYL 39
>pdb|3I9Y|A Chain A, Crystal Structure Of The V. Parahaemolyticus Histidine
Kinase Sensor Tors Sensor Domain
Length = 276
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 362 IEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFK 397
+E K+Q+ QA+ L++ D D +LHE +L +FK
Sbjct: 137 LEANKKDQVYQALDALVEVDLDLTERLHELHLLAFK 172
>pdb|3O1H|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 277
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 362 IEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFK 397
+E K+Q+ QA+ L++ D D +LHE +L +FK
Sbjct: 137 LEANKKDQVYQALDALVEVDLDLTERLHELHLLAFK 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,434,100
Number of Sequences: 62578
Number of extensions: 383654
Number of successful extensions: 790
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 10
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)