BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3152
(402 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1
Length = 578
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 14/168 (8%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
+++++A+RR DP + +VD A+ VALY+F +EW+KT +EG LFVY R SP + I
Sbjct: 15 DISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGFTI 74
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK-- 125
+NR S EN EP+ K+LD QLQNPF+LY+N IYGIWFY+KE+C RI+ ++++L +
Sbjct: 75 MNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQSE 134
Query: 126 --ELTHTPSSSKPNLKPKKPVEQMGNGL---IMNMLTKAQEEYNSHKS 168
+ H SS L G G I+ MLTKA++EY K+
Sbjct: 135 QLKACHGAGSSPVTLS-------SGEGQEVDILQMLTKAKDEYTKCKT 175
>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1
Length = 581
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 117/183 (63%), Gaps = 19/183 (10%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
+++++A+RR DP + +VD A+ VALY+F +EW+KT++EG LFVY R SP + I
Sbjct: 13 DISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGFTI 72
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK-- 125
+NR S EN EP+ K+LD LQ+PF+LY+N + IYGIWFY+KE+C RI++++++L +
Sbjct: 73 MNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQYE 132
Query: 126 --ELTHTPSSSKPNLKPKKPVEQMGNGL-----IMNMLTKAQEEYNSHKSPMRNDKPREL 178
+ H + PV +G+G I+ MLTKA++EY K+ +P+++
Sbjct: 133 QLKAHHGTGAG------ASPVS-LGSGEGKEADILRMLTKAKDEYTKCKT---CSEPKQI 182
Query: 179 ESA 181
S+
Sbjct: 183 SSS 185
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 365 LTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVV 400
L+K Q+ +A+ HL+++D +F+N ++EAYL S
Sbjct: 541 LSKLQLQEALLHLIQNDDNFLNIIYEAYLFSLTQAA 576
>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1
Length = 609
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 108/165 (65%), Gaps = 6/165 (3%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
+++++A++R DP + +VD A+ VALY+F +EW+KT++EG LFVY R SP + I
Sbjct: 15 DISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTI 74
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK-E 126
+NR S EN EP+ K+LD QLQ+PF+LY+N + IYGIWFY+KE+C RI++++++L + E
Sbjct: 75 MNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQYE 134
Query: 127 LTHTPSSSKPNLKPKKPVEQMGNGL---IMNMLTKAQEEYNSHKS 168
+ + P + G G I+ ML KA++EY K+
Sbjct: 135 QLKAHQGTGAGISPM--ILNSGEGKEVDILRMLIKAKDEYTKCKT 177
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 364 PLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVV 400
PLTK Q+ +A+ +L+++D +F+N ++EAYL S
Sbjct: 568 PLTKLQLQEALLYLIQNDDNFLNIIYEAYLFSMTQAA 604
>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2
Length = 617
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 108/165 (65%), Gaps = 6/165 (3%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
+++++A++R DP + +VD A+ VALY+F +EW+KT++EG LFVY R SP + I
Sbjct: 15 DISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFTI 74
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK-E 126
+NR S EN EP+ K+LD QLQ+PF+LY+N + IYGIWFY+KE+C RI++++++L + E
Sbjct: 75 MNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQYE 134
Query: 127 LTHTPSSSKPNLKPKKPVEQMGNGL---IMNMLTKAQEEYNSHKS 168
+ + P + G G I+ ML KA++EY K+
Sbjct: 135 QLKAHQGTGAGISPV--ILNSGEGKEVDILRMLIKAKDEYTKCKT 177
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 364 PLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSF 396
PLTK Q+ +A+ +L+++D +F+N ++EAYL S
Sbjct: 576 PLTKLQLQEALLYLIQNDDNFLNIIYEAYLFSM 608
>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1
Length = 602
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 104/165 (63%), Gaps = 11/165 (6%)
Query: 6 DSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSM 65
+ E++++A+++ DP + + D VALY+F ++W+KT+IEG LFVYRR SP +
Sbjct: 28 EQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 87
Query: 66 FILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK 125
I+NR + NL+EPV K+L+ QL PF+LY+N IY IWFY+K DCHRI+ ++ +V+
Sbjct: 88 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 147
Query: 126 ELTHTPSSSKPNLKPKKPVEQMGNGL-------IMNMLTKAQEEY 163
E T S+ + K+ Q NG I+ ML++A++EY
Sbjct: 148 EETR---RSQQAARDKQSPSQ-ANGCSDQRPIDILEMLSRAKDEY 188
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 365 LTKNQIVQAVSHLLKHDADFVNKLHEAYL 393
L+K+Q+ + HL+K+D+ F++ LH YL
Sbjct: 562 LSKSQLQDTLIHLIKNDSSFLSTLHAVYL 590
>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2
Length = 582
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 11/167 (6%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
E++++A+++ DP + + D VALY+F ++W+KT+IEG LFVYRR SP + I
Sbjct: 10 EMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTI 69
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKEL 127
+NR + NL+EPV K+L+ QL PF+LY+N IY IWFY+K DCHRI+ ++ +V+E
Sbjct: 70 VNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVEEE 129
Query: 128 THTPSSSKPNLKPKKPVEQMGNGL-------IMNMLTKAQEEYNSHK 167
T S+ + K+ Q NG I+ ML++A++EY ++
Sbjct: 130 TR---RSQQAARDKQSPSQ-ANGCSDHRPIDILEMLSRAKDEYERNQ 172
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 365 LTKNQIVQAVSHLLKHDADFVNKLHEAYL 393
L+K+Q+ + HL+K+D+ F++ LHE YL
Sbjct: 542 LSKSQLQDTLIHLIKNDSSFLSTLHEVYL 570
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
GN=At1g08370 PE=1 SV=2
Length = 367
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 84/133 (63%), Gaps = 6/133 (4%)
Query: 9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFIL 68
+N++ ++R+DP +++++ +A HV Y FN S+W + ++EG+LFV +R P + ++
Sbjct: 19 LNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFIVM 78
Query: 69 NRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKELT 128
NR + +NL+E ++ + + ++Q P++LY+N + GIWFYNK +C ++ + ++
Sbjct: 79 NRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEVATLFNRILS--- 135
Query: 129 HTPSSSKPNLKPK 141
+ SK N KPK
Sbjct: 136 ---AYSKVNQKPK 145
>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1
Length = 127
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFIL 68
VN+ ++ P ++ ++D A+HVA+Y F+ +W KT+IEG F+ + + + IL
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARV-GYVIL 69
Query: 69 NRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDIL-QSLVK 125
NRNSPENL + ++ L + +++++ + + G+W ++ D RI +I+ +SL++
Sbjct: 70 NRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR 127
>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1
PE=3 SV=1
Length = 193
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 58/177 (32%)
Query: 3 KLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRR----- 57
+L +N + I R DP +K L+ H +Y + +++W+K +G L +Y R
Sbjct: 13 ELYRKTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLRDVREQ 72
Query: 58 VESPL------------------------YSMFILNRNSPENL----------------- 76
E P+ Y++ +LNR +PEN
Sbjct: 73 AELPVPHQEASAGAEGRCGEVLSGRDIYNYALIVLNRINPENFSIAIAPNSVVNKRRLFS 132
Query: 77 --------LEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVK 125
LEP +D+++++ ++ KN + +YGIW + D I D+L+ L++
Sbjct: 133 PEENVQQPLEP----MDVEVKDELVIIKNLRKEVYGIWIHTPTDRQNIYDLLKYLLE 185
>sp|Q12517|DCP1_YEAST mRNA-decapping enzyme subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DCP1 PE=1 SV=1
Length = 231
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 9 VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRR 57
+N + I R DP +K L+ H +LY ++ K EW+K +G L +Y R
Sbjct: 22 LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLR 70
>sp|Q6ND22|SYL_RHOPA Leucine--tRNA ligase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=leuS PE=3 SV=1
Length = 876
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 216 IPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDM 275
IPII P VVP P A + V + P ++++H + P+ GG V++
Sbjct: 446 IPIIHCPTCDVVPVPDADLPVVLPEDVS--FDKPGNALDHHPTWKHVTCPKCGGKAVRET 503
Query: 276 AAVPVELENNMLFMRISD 293
+ ++++ F R +D
Sbjct: 504 DTMDTFVDSSWYFARFTD 521
>sp|B3Q8A1|SYL_RHOPT Leucine--tRNA ligase OS=Rhodopseudomonas palustris (strain TIE-1)
GN=leuS PE=3 SV=1
Length = 876
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 216 IPIIQRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSITPQAGGARVKDM 275
IPII P VVP P A + V + P ++++H + P+ GG V++
Sbjct: 446 IPIIHCPTCDVVPVPDADLPVVLPEDVS--FDKPGNALDHHPTWKHVTCPKCGGKAVRET 503
Query: 276 AAVPVELENNMLFMRISD 293
+ ++++ F R +D
Sbjct: 504 DTMDTFVDSSWYFARFTD 521
>sp|Q28G26|P4K2B_XENTR Phosphatidylinositol 4-kinase type 2-beta OS=Xenopus tropicalis
GN=pi4k2b PE=2 SV=1
Length = 492
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 138 LKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQG 197
++PK+ + + ++ L A EE +H +P+ + P+ +AP S + FF+ + +
Sbjct: 1 MEPKQTADARDSPPLLVFLEPAAEEVTAHTAPL-SPNPQSARAAPGSAVRFFSDSAREEE 59
Query: 198 VGENH-LPQPPGFVNPPAA 215
GE+ L + G V+P AA
Sbjct: 60 AGEDEPLLKKSGPVSPRAA 78
>sp|P59654|COMB_STRR6 Transport protein ComB OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=comB PE=3 SV=1
Length = 449
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 248 NPVHSVEHIEKQQRSITPQAGGARVKDMAAVPVELENNMLFMRISDSPIPTQQFFNSNLS 307
N +S+ K Q PQ V + A +LE+++ R+ + TQQ + S LS
Sbjct: 208 NLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLS 267
Query: 308 QPVDALHMNGLELVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTK 367
+++L L V + +L+ + + S K G+ L G + A H+ P T
Sbjct: 268 SQLESLKSQHLAKV-GQELSLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETS 326
Query: 368 NQIVQAVSHLL 378
+ + A LL
Sbjct: 327 DSSMVAEGTLL 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,746,546
Number of Sequences: 539616
Number of extensions: 6947504
Number of successful extensions: 21514
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 21341
Number of HSP's gapped (non-prelim): 215
length of query: 402
length of database: 191,569,459
effective HSP length: 120
effective length of query: 282
effective length of database: 126,815,539
effective search space: 35761981998
effective search space used: 35761981998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)