RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3152
(402 letters)
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex,
hydrolase; 2.33A {Schizosaccharomyces pombe} PDB:
2qkm_A*
Length = 127
Score = 150 bits (379), Expect = 1e-44
Identities = 34/125 (27%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 2 AKLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESP 61
+ + VN+ ++ P ++ ++D A+HVA+Y F+ +W KT+IEG F+ + +
Sbjct: 4 ENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKD-QRA 62
Query: 62 LYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQ 121
ILNRNSPENL + ++ L + +++++ + + G+W ++ D RI +I++
Sbjct: 63 RVGYVILNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVK 122
Query: 122 SLVKE 126
+
Sbjct: 123 ESLLR 127
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta
sandwich, transcription; 2.30A {Saccharomyces
cerevisiae} SCOP: b.55.1.7
Length = 231
Score = 80.0 bits (196), Expect = 2e-17
Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 9/178 (5%)
Query: 3 KLTDSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPL 62
+ +N + I R DP +K L+ H +LY ++ K EW+K +G L +Y R S
Sbjct: 16 EFYRKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQ- 74
Query: 63 YSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQS 122
+ + V D Q + I N N + +
Sbjct: 75 -------NTNLLPVSPQEVDIFDSQNGSNNIQVNNGSDNSNRNSSGNGNSYKSNDSLTYN 127
Query: 123 LVKELTHTPSSSKP-NLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELE 179
K L+ + + + + G++ N + ++ +N+ + + + +E
Sbjct: 128 CGKTLSGKDIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLECMGVE 185
Score = 56.9 bits (136), Expect = 2e-09
Identities = 24/140 (17%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 6 DSEVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSM 65
+ ++ S + V + D++ + + N +KS T G + + Y +
Sbjct: 85 EVDIFDSQNGSNNIQVNNGSDNSNRNSSGNGNSYKSNDSLTYNCGKTLSGK--DIYNYGL 142
Query: 66 FILNRNSPEN---------------------LLEPVVKELDLQLQNPFILYKNKQGLIYG 104
ILNR +P+N ++ + +++++ ++ KN + +YG
Sbjct: 143 IILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLECMGVEVKDELVIIKNLKHEVYG 202
Query: 105 IWFYNKEDCHRISDILQSLV 124
IW + D I ++++ L+
Sbjct: 203 IWIHTVSDRQNIYELIKYLL 222
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization
module, mRNA decapping, P-BODY component, structural
protein; 2.80A {Drosophila melanogaster}
Length = 46
Score = 51.3 bits (122), Expect = 4e-09
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 358 PPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDVV 400
P L Q VQA ++L+++D +F NKLH+AYLN +++
Sbjct: 2 PHMADLLLNSTQFVQAFTYLIQNDKEFANKLHKAYLNGCSNLL 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 62/468 (13%), Positives = 126/468 (26%), Gaps = 139/468 (29%)
Query: 8 EVNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFI 67
V A + KD+ D + K E D + + + S +F
Sbjct: 23 SVFEDAFVD-NFDCKDVQDMPKSIL------SKEEIDH------IIMSKDAVSGTLRLFW 69
Query: 68 LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKEL 127
+ E +++ V+E+ L++ F++ + ++ + L
Sbjct: 70 TLLSKQEEMVQKFVEEV-LRINYKFLMSP---------IKTEQRQPSMMTRMYIEQRDRL 119
Query: 128 THTPSS-SKPNLKPKKPVEQMGNGLIMNMLTKAQEEYN--------SHKSPMRNDKPREL 178
+ +K N+ +P + + L + + N S K+ + D
Sbjct: 120 YNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 179 ESAPQSVMDFFAKAGVS-QGVGENHLPQPPGFVNPPAAIPIIQRPAAYVVPPPAAPVAEV 237
+ Q MDF + + N P + + + Y + P ++
Sbjct: 175 K--VQCKMDF----KIFWLNLKN---------CNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 238 SHPIIQR----------------------IMSNPVHSVEHIEK-----------QQRSIT 264
S I R ++ N V + + + + +T
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 265 PQAGGARVKDMAAVPVEL-----ENNMLF-----MRISDSP------IP---------TQ 299
A ++ + E L R D P P +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 300 QFFN--SNLSQP-VDALHMNGLELVESNKSALMPPTMFTSSSTSKDAGDKLMNGILGAE- 355
N D L ++ES+ + L P + D+L +
Sbjct: 339 DGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEY-------RKMFDRL--SVFPPSA 385
Query: 356 PIPPKHIEPLTKNQIVQAV----------SHLLKHDADFVNKLHEAYL 393
IP + + + I V S + K + + YL
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 40.2 bits (93), Expect = 0.001
Identities = 46/427 (10%), Positives = 110/427 (25%), Gaps = 175/427 (40%)
Query: 69 NRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSL----- 123
++ + V DC + D+ +S+
Sbjct: 18 YKDILSVFEDAFVDNF---------------------------DCKDVQDMPKSILSKEE 50
Query: 124 VKELTHTPSSSKPNL--------KPKKPVEQ-MGNGLIMN---MLTKAQEE--------- 162
+ + + + L K ++ V++ + L +N +++ + E
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 163 -YNSHKSPMRNDKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQ- 220
Y + + ND V+ ++
Sbjct: 111 MYIEQRDRLYNDNQ----------------------------VFAKYNVSRLQPYLKLRQ 142
Query: 221 -----RPAAYVVPPPAAPV------------AEV--SHPIIQRIMSNPVH--SVEH---- 255
RPA V+ + +V S+ +Q M + ++++
Sbjct: 143 ALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYK-VQCKMDFKIFWLNLKNCNSP 195
Query: 256 ---IEKQQR---SITPQAGGARVKDMAAVPVELEN-----NMLFMR------------IS 292
+E Q+ I P +R + + + + + L +
Sbjct: 196 ETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 293 DSPIPTQQFFN-----------SNLSQPVDALHMNGLELVESNKSALMPPTMFTSSSTSK 341
++ FN ++ + A + L + + T
Sbjct: 255 NAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-------LT-----P 300
Query: 342 DAGDKLMNGILGAEP--IPP--KHIEPLTKNQIVQAVSHLLKH-------DADFVNKLHE 390
D L+ L P +P P + I +++ L + D + + E
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 391 AYLNSFK 397
+ LN +
Sbjct: 361 SSLNVLE 367
Score = 38.3 bits (88), Expect = 0.005
Identities = 60/404 (14%), Positives = 138/404 (34%), Gaps = 111/404 (27%)
Query: 4 LTDSEV--------NVSAIRRV--------DPMVKDLVDSATHVALYSF--NGHKSEWDK 45
L+ E+ VS R+ + MV+ V+ + Y F + K+E +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQ 104
Query: 46 TNIEGALFVYRRVESPLYS---MFI-LNRNSPENLLEPVVKELDLQLQ-NPFIL------ 94
++ +++ +R LY+ +F N + + L+ +++ L+L+ +L
Sbjct: 105 PSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLG 160
Query: 95 -------------YKNKQGLIYGI-W--FYNKEDCHRISDILQSLVKELTHTPSS-SKPN 137
YK + + + I W N + ++LQ L+ ++ +S S +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 138 LKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSP---MRN--DKPRELE-----------SA 181
K + + L + +K +++ + N + + +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSK------PYENCLLVLLNVQN-AKAWNAFNLSCKILLTTR 273
Query: 182 PQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPIIQRPAAYV-VPPPAAP-VAEVSH 239
+ V DF + A + ++H P ++ Y+ P P ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHH---SMTL-TPDEVKSLL---LKYLDCRPQDLPREVLTTN 326
Query: 240 P----IIQRIMSNPVHSVEH-----IEKQQRSITPQAGGARVKDMAAVPVELENNMLFMR 290
P II + + + + ++ +K I + + + P E +F R
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLNVLE--PAEYRK--MFDR 377
Query: 291 IS----DSPIPTQ--QFFNSNLSQPVDALHMNGLELVESNKSAL 328
+S + IPT ++ + + +N L S +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH----KYSLV 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 6e-06
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 44/158 (27%)
Query: 4 LTDSEVNVSAIRRVD---PMVKD----LVDSATHV-------ALYSFNGH------KSEW 43
LT +V + + + P K LV+ A ++ +LY N S
Sbjct: 344 LTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 44 DKTNIEGA----LFVYR--RVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKN 97
D++ I + F R V SP F +S LL P ++ L + +
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASP----F----HSH--LLVPASDLINKDLVKNNVSFNA 452
Query: 98 KQGLIYGIWFYNKED----CHRISDILQSLVKELTHTP 131
K + I Y+ D I + +V + P
Sbjct: 453 KD-I--QIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 38.9 bits (90), Expect = 0.003
Identities = 56/345 (16%), Positives = 99/345 (28%), Gaps = 132/345 (38%)
Query: 19 PMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESPLYSMFILNRNSPENLLE 78
+V DL+ + L + +K +G L + +E+P + ++ L
Sbjct: 182 VLVGDLIKFSAET-LSELIRTTLDAEKVFTQG-LNILEWLENP-------SNTPDKDYLL 232
Query: 79 ------PVVKELDLQL-----------QNPFILYKNKQGLI---YGI-----------W- 106
P++ + +QL P L +G G+ W
Sbjct: 233 SIPISCPLI-GV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 107 -FYNKEDCHRISDILQSLVKELTH--------TPSSSKPNLKPKKPVEQMGNGLIMNML- 156
F+ ++ + L P++S P + +E G+ ML
Sbjct: 291 SFF---------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLS 340
Query: 157 ----TKAQ-----EEYNSHKSP-------MRNDK--------PRELESAPQSVMDFFAKA 192
T+ Q + NSH + N P+ L ++ A +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 193 GVSQGVGENHLP---QPPGFVN-------P-------PAAIPIIQRPAAYVVPPPAA--- 232
G+ Q + +P + F N P PA+ I + V A
Sbjct: 401 GLDQ----SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 233 -PV-------------AEVSHPIIQRIMSNPVH-------SVEHI 256
PV +S I+ I+ PV HI
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 37.7 bits (87), Expect = 0.008
Identities = 52/379 (13%), Positives = 124/379 (32%), Gaps = 89/379 (23%)
Query: 59 ESP--LYSMFI-----LNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKE 111
+P L F+ L S + V+ + +N ++ + L + N
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 112 DCHRISDILQS--LVKELTHTPSSSKPNLKPKKPVEQM---------GNGLIMNMLTKAQ 160
+ +++++ + + P K N + V + G G + + +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 161 EEYNSHKSPMRN------DKPRELESAPQSVMDFFAKAGVSQGV-------GENHLPQPP 207
+ Y ++ + + + EL F +QG+ ++ P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKD 229
Query: 208 GFVNPPAAIPII---QRPAAYVVPPPAAPVAEVSHPIIQRIMSNPVHSVEHIEKQQRSIT 264
++ P + P+I Q A YVV A++ P ++ + T
Sbjct: 230 YLLSIPISCPLIGVIQL-AHYVV------TAKLLG-------FTPGELRSYL----KGAT 271
Query: 265 PQAGGARVKDM-AAVPVELENNMLFMRISDSPIPTQQFFNSNLSQPVDALHMNGLELVES 323
+ + AV + +DS + F ++ + + L G+ E+
Sbjct: 272 -----GHSQGLVTAVAIAE---------TDSW----ESFFVSVRKAITVLFFIGVRCYEA 313
Query: 324 NKSALMPPTMFTSSSTSKDAGDKLMNGILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDAD 383
+ +PP++ S + + + + +L + + ++ V + L
Sbjct: 314 YPNTSLPPSI---LEDSLENNEGVPSPMLSISNLTQEQVQ-----DYVNKTNSHLPAG-- 363
Query: 384 FVNKLHEAYLNSFKD-VVS 401
++ + +N K+ VVS
Sbjct: 364 --KQVEISLVNGAKNLVVS 380
Score = 30.8 bits (69), Expect = 0.92
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 36/123 (29%)
Query: 295 PIPTQQF---------FNSNLSQPVDALHMNG-----LELVESNKSALMPPTMFTSSSTS 340
+PT F FN L +P + + ELV + + SS
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----GKFL---GYVSSLVE 73
Query: 341 KDAG---DKLMNGILGAEPIPPKHIEP--LTKNQIVQAVSHLLKHDADFVNKLHE---AY 392
D+++N L E L N I + LL+ + + K E Y
Sbjct: 74 PSKVGQFDQVLNLCL-------TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 393 LNS 395
+ +
Sbjct: 127 ITA 129
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module,
P-BODY component, asymmetric assembly; 2.31A {Homo
sapiens}
Length = 51
Score = 37.9 bits (87), Expect = 2e-04
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 356 PIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSF 396
P L+K+Q+ + HL+K+D+ F++ LHE YL
Sbjct: 2 PHMADLSIILSKSQLQDTLIHLIKNDSSFLSTLHEVYLQVL 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 121 QSLVKELT-----HTPSSSKPNLKPKKPVE 145
Q+L K+L + S+ P L K +E
Sbjct: 20 QAL-KKLQASLKLYADDSA-PALAIKATME 47
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA
export, nuclear hydrolase; HET: IHP; 2.50A
{Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B*
3rrm_B* 3rrn_B*
Length = 297
Score = 28.1 bits (62), Expect = 5.5
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 115 RISDILQSLVKELTHTPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRN-- 172
D + + +++ + N++ + LT + ++ ++ +
Sbjct: 14 HYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLI 73
Query: 173 DKPRELESAPQSVMDFFAKAGVSQGVGENHLPQPPGFVNPPAAIPI 218
+ + A +++F AKA V Q E V P +A+P+
Sbjct: 74 NDTKGDSLAYHWILNFIAKAVVHQAETE-------VRVKPESALPL 112
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 27.7 bits (62), Expect = 9.9
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 36/106 (33%)
Query: 130 TPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELESAPQSVMDFF 189
PSS K V M ++ N L + +L P+SV+ FF
Sbjct: 876 APSS--------KVVGDMALYMVQNDLDEQSVI----------TDGYKL-DFPESVVSFF 916
Query: 190 AKAGVSQGVGENHLPQPP-GFVNPPAAI------PIIQRPAAYVVP 228
+G + QP GF A+ + RP Y+ P
Sbjct: 917 ------KG----EIGQPVNGFNKDLQAVILKGQEALTARPGEYLEP 952
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.378
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,854,646
Number of extensions: 342183
Number of successful extensions: 628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 25
Length of query: 402
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 306
Effective length of database: 4,021,377
Effective search space: 1230541362
Effective search space used: 1230541362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.1 bits)