RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3152
         (402 letters)



>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 207

 Score = 72.9 bits (178), Expect = 1e-15
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 9   VNVSAIRRVDPMVKDLVDSATHVALYSFNGHKSEWDKTNIEGALFVYRRVESP------- 61
           +N + I R DP +K L+    H +LY ++  K EW+K   +G L +Y R  S        
Sbjct: 1   LNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPV 60

Query: 62  -LYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQG 100
               + I +  +  N ++      +    +       K  
Sbjct: 61  SPQEVDIFDSQNGSNNIQVNNGSDNSNRNSSGNGNSYKSN 100



 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 21/88 (23%)

Query: 59  ESPLYSMFILNRNSPENL---------------------LEPVVKELDLQLQNPFILYKN 97
           +   Y + ILNR +P+N                          ++ + +++++  ++ KN
Sbjct: 115 DIYNYGLIILNRINPDNFSMGIVPNSVVNKRKVFNAEEDTLNPLECMGVEVKDELVIIKN 174

Query: 98  KQGLIYGIWFYNKEDCHRISDILQSLVK 125
            +  +YGIW +   D   I ++++ L++
Sbjct: 175 LKHEVYGIWIHTVSDRQNIYELIKYLLE 202


>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 49  EGALFVYRRVESPLYSMFILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFY 108
              +F+Y + E    ++  +  +  +   E   K++  ++ N  + Y+        I FY
Sbjct: 178 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR-------AIQFY 230

Query: 109 NKEDCHRISDILQSLVKELTHT 130
            +     ++D+L  L   L HT
Sbjct: 231 LEFKPLLLNDLLMVLSPRLDHT 252


>d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus
          virus-like particle SSV1 [TaxId: 244589]}
          Length = 64

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 43 WDKTNIEGALFVYRRVESPLYSM 65
           DK  +  A F  +++E+ LY +
Sbjct: 36 MDKQKLGKAYFQVQKIEAELYQL 58


>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 26.3 bits (57), Expect = 5.9
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 67  ILNRNSPENLLEPVVKELDLQLQNPFILYKNKQGLIYGIWFYNKEDCHRISDILQSLVKE 126
           ILN+ +P+   + + +   L +     L    +G+I  + F    D    S    ++ + 
Sbjct: 18  ILNKLTPQMFNQLMKQVSGLTVDTEERL----KGVI-DLVFEKAIDEPSFSVAYANMCRC 72

Query: 127 LTHTPSSSKPNLKPKKPVEQMGNGLIMNMLTKAQEEYNSHKSPMRNDKPRELE 179
           L            P              +L + Q+E+   K+     + ++ E
Sbjct: 73  LVTLKV-------PMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKE 118


>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 176

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 351 ILGAEPIPPKHIEPLTKNQIVQAVSHLLKHDADFVNKLHEAYLNSFKDV 399
           ++  EP P    EP    Q +Q + + L +D  ++ K +    +  K+ 
Sbjct: 3   MINQEPYPMIVGEPSLIGQFIQELKYPLAYDFVWLTKSNPHKRDPMKNA 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,411,381
Number of extensions: 63852
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 9
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (24.9 bits)