Query psy3153
Match_columns 89
No_of_seqs 88 out of 109
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 17:45:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_E Cytochrome C oxidase po 100.0 7.3E-52 2.5E-56 289.1 7.2 77 1-78 33-109 (109)
2 2y69_E Cytochrome C oxidase su 100.0 1E-49 3.4E-54 290.9 7.2 77 1-78 76-152 (152)
3 2lva_A Ubiquitin carboxyl-term 84.0 0.22 7.6E-06 35.4 0.0 40 2-43 23-62 (129)
4 1vdl_A Ubiquitin carboxyl-term 80.9 1.5 5.3E-05 28.9 3.3 27 10-38 37-63 (80)
5 2xcb_A PCRH, regulatory protei 72.3 13 0.00045 22.3 6.1 46 19-66 92-137 (142)
6 2e2e_A Formate-dependent nitri 71.4 6.5 0.00022 24.1 4.2 62 13-76 115-176 (177)
7 4g26_A Pentatricopeptide repea 71.0 5.2 0.00018 31.2 4.4 51 6-56 168-218 (501)
8 2czy_A Paired amphipathic heli 64.5 7.3 0.00025 24.2 3.4 34 29-63 4-37 (77)
9 2rpa_A Katanin P60 ATPase-cont 62.5 8.2 0.00028 24.6 3.4 44 16-59 12-66 (78)
10 3ox4_A Alcohol dehydrogenase 2 57.8 7.1 0.00024 29.7 2.9 30 51-80 320-350 (383)
11 2nr4_A Conserved hypothetical 56.3 15 0.00053 26.1 4.3 45 14-58 162-211 (213)
12 2vkj_A TM1634; membrane protei 55.8 9.5 0.00033 26.2 3.0 43 20-62 60-103 (106)
13 2g3q_A Protein YBL047C; endocy 54.9 16 0.00054 19.8 3.3 23 12-36 17-39 (43)
14 2iml_A Hypothetical protein; F 54.0 22 0.00077 25.2 4.9 46 14-59 137-191 (199)
15 2ptf_A Uncharacterized protein 53.3 20 0.00068 26.1 4.6 46 14-59 171-221 (233)
16 2cr7_A Paired amphipathic heli 53.1 8.7 0.0003 24.0 2.3 33 30-63 11-43 (80)
17 1t23_A Chromosomal protein MC1 52.6 5.8 0.0002 26.8 1.5 9 17-25 26-34 (93)
18 4g26_A Pentatricopeptide repea 51.6 32 0.0011 26.7 5.8 35 8-42 100-134 (501)
19 2ekk_A UBA domain from E3 ubiq 51.5 13 0.00043 20.7 2.6 20 14-36 24-43 (47)
20 2jv7_A CBP, calcium-binding pr 51.0 16 0.00056 23.9 3.4 44 25-72 8-58 (78)
21 1wiv_A UBP14, ubiquitin-specif 50.3 12 0.00041 23.0 2.6 24 12-37 42-65 (73)
22 3qxl_A RAS-specific guanine nu 49.7 6.3 0.00022 29.1 1.4 24 19-42 110-133 (271)
23 1e91_A Paired amphipathic heli 49.4 24 0.00082 22.2 4.0 41 28-70 6-46 (85)
24 1a17_A Serine/threonine protei 49.2 37 0.0013 19.7 7.3 67 13-80 81-166 (166)
25 2vgx_A Chaperone SYCD; alterna 49.0 44 0.0015 20.6 6.4 46 19-66 95-140 (148)
26 1wgl_A TOLL-interacting protei 48.9 8.3 0.00028 23.2 1.6 24 12-37 24-47 (59)
27 1wji_A Tudor domain containing 48.6 14 0.00047 22.2 2.6 24 12-37 22-45 (63)
28 3r2d_A Protein NUSB, N utiliza 48.3 28 0.00096 23.4 4.4 39 5-44 94-132 (149)
29 1ef4_A Subunit N, DNA-directed 47.7 11 0.00039 23.0 2.1 27 42-68 8-40 (55)
30 2ije_S Guanine nucleotide-rele 47.4 11 0.00036 27.0 2.3 24 19-42 83-106 (240)
31 2kat_A Uncharacterized protein 45.7 21 0.00072 20.3 3.0 43 21-66 61-103 (115)
32 1z96_A DNA-damage, UBA-domain 45.5 22 0.00076 18.4 2.9 23 12-36 17-39 (40)
33 1g1e_B SIN3A; four-helix bundl 45.5 30 0.001 22.0 4.0 35 28-63 9-43 (89)
34 2ho1_A Type 4 fimbrial biogene 44.7 56 0.0019 20.5 5.4 21 20-40 182-202 (252)
35 2rkl_A Vacuolar protein sortin 44.0 15 0.00052 22.2 2.2 30 9-38 10-45 (53)
36 2dhy_A CUE domain-containing p 44.0 22 0.00077 21.9 3.1 28 12-41 33-60 (67)
37 1ify_A HHR23A, UV excision rep 43.7 12 0.00041 21.2 1.7 24 12-37 21-44 (49)
38 1vg5_A RSGI RUH-014, rhomboid 42.9 23 0.0008 22.0 3.1 25 11-37 41-65 (73)
39 3smv_A S-(-)-azetidine-2-carbo 42.8 17 0.00059 22.8 2.5 19 9-27 151-169 (240)
40 1vlj_A NADH-dependent butanol 42.6 16 0.00054 27.8 2.7 29 52-80 336-365 (407)
41 3ma5_A Tetratricopeptide repea 42.1 32 0.0011 19.6 3.5 45 21-68 49-93 (100)
42 1twf_J DNA-directed RNA polyme 41.7 17 0.00059 23.1 2.3 27 42-68 9-42 (70)
43 1ttz_A Conserved hypothetical 41.2 7.8 0.00027 23.6 0.7 22 56-77 15-36 (87)
44 1rrm_A Lactaldehyde reductase; 41.0 18 0.00062 27.0 2.8 29 52-80 321-350 (386)
45 4djd_D C/Fe-SP, corrinoid/iron 40.5 8.4 0.00029 29.9 0.9 63 11-75 142-213 (323)
46 4ayb_N DNA-directed RNA polyme 40.4 16 0.00055 23.0 2.0 27 42-68 9-41 (66)
47 1otk_A Protein PAAC, phenylace 38.9 35 0.0012 25.6 4.0 28 48-75 190-217 (249)
48 2f05_A Paired amphipathic heli 38.0 43 0.0015 22.0 4.0 36 28-64 6-41 (105)
49 2ii0_A SOS-1, SON of sevenless 37.6 19 0.00064 28.4 2.5 22 21-42 301-322 (490)
50 1ais_B TFB TFIIB, protein (tra 36.6 38 0.0013 22.7 3.6 52 11-69 146-197 (200)
51 1oj7_A Hypothetical oxidoreduc 36.0 26 0.00089 26.6 3.0 29 52-80 345-374 (408)
52 3mud_A DNA repair protein XRCC 35.1 66 0.0022 23.4 4.9 54 9-66 118-173 (175)
53 1pc2_A Mitochondria fission pr 35.0 69 0.0024 22.1 4.8 44 22-67 80-123 (152)
54 2ond_A Cleavage stimulation fa 34.9 89 0.003 21.1 5.3 29 13-41 203-231 (308)
55 2zc2_A DNAD-like replication p 34.8 17 0.0006 21.5 1.5 12 12-23 36-47 (78)
56 2inc_A Toluene, O-xylene monoo 34.8 61 0.0021 26.3 5.1 46 29-74 261-317 (491)
57 3bfj_A 1,3-propanediol oxidore 34.7 26 0.00091 26.2 2.8 29 52-80 325-354 (387)
58 3b5m_A Uncharacterized protein 34.7 42 0.0014 23.7 3.7 45 14-58 142-191 (205)
59 2kou_A Dicer-like protein 4; A 34.6 17 0.00057 23.6 1.5 10 17-26 69-78 (102)
60 2knz_A Ubiquilin-4; cytoplasm, 34.3 45 0.0015 19.0 3.2 24 12-37 25-48 (53)
61 2pk8_A Uncharacterized protein 34.1 11 0.00038 25.8 0.6 46 32-77 15-81 (103)
62 1z3e_B DNA-directed RNA polyme 33.1 21 0.00072 22.1 1.7 23 50-72 49-71 (73)
63 1tzv_A NUSB protein, N utiliza 33.1 59 0.002 21.3 4.0 36 8-44 96-131 (142)
64 2dag_A Ubiquitin carboxyl-term 33.0 39 0.0013 20.7 3.0 23 14-37 24-46 (74)
65 2dak_A Ubiquitin carboxyl-term 32.9 28 0.00097 20.4 2.2 23 13-37 23-45 (63)
66 3s4r_A Vimentin; alpha-helix, 32.4 34 0.0012 21.9 2.7 42 25-66 17-69 (93)
67 1c9b_A General transcription f 32.2 34 0.0012 23.1 2.8 59 11-76 140-198 (207)
68 1nxh_A MTH396 protein; hypothe 31.3 22 0.00074 25.0 1.7 29 37-69 8-36 (126)
69 2v5f_A Prolyl 4-hydroxylase su 30.8 68 0.0023 18.8 3.7 34 10-43 43-76 (104)
70 3hl0_A Maleylacetate reductase 30.2 28 0.00096 26.3 2.3 27 54-80 289-316 (353)
71 3viq_A SWI5-dependent recombin 29.3 15 0.00053 25.0 0.7 21 58-79 97-117 (122)
72 3bqs_A Uncharacterized protein 28.6 14 0.00047 23.9 0.3 16 58-73 16-31 (93)
73 1whc_A RSGI RUH-027, UBA/UBX 3 28.5 54 0.0019 19.4 3.0 25 12-37 22-46 (64)
74 3fnr_A Arginyl-tRNA synthetase 28.3 13 0.00045 29.6 0.2 61 13-75 384-456 (464)
75 2ld7_B Paired amphipathic heli 28.1 43 0.0015 20.7 2.6 27 31-59 10-36 (75)
76 2kck_A TPR repeat; tetratricop 27.9 72 0.0025 16.8 3.2 33 13-45 40-72 (112)
77 4b4t_P 26S proteasome regulato 27.9 1.7E+02 0.0058 22.4 6.4 58 6-64 49-106 (445)
78 2xpi_A Anaphase-promoting comp 27.5 1.3E+02 0.0043 21.7 5.2 36 10-45 511-548 (597)
79 1ufz_A Hypothetical protein BA 27.1 23 0.00077 23.2 1.1 15 8-22 47-61 (83)
80 2rno_A Putative DNA-binding pr 26.6 27 0.00093 24.1 1.5 15 55-69 22-36 (110)
81 1veg_A NEDD8 ultimate buster-1 26.5 49 0.0017 21.2 2.7 25 12-38 42-66 (83)
82 3r2k_A Bacterioferritin, BFR; 26.4 1.1E+02 0.0037 19.2 4.3 44 20-68 104-147 (154)
83 3d3b_A Protein NUSB, N utiliza 26.4 63 0.0021 21.1 3.3 35 8-43 98-132 (141)
84 2z5i_A TM, general control pro 26.4 87 0.003 18.2 3.6 46 16-65 4-49 (52)
85 3uhj_A Probable glycerol dehyd 26.3 45 0.0015 25.6 2.8 25 52-76 314-339 (387)
86 3jzd_A Iron-containing alcohol 26.3 37 0.0013 25.7 2.3 27 54-80 294-321 (358)
87 3iv7_A Alcohol dehydrogenase I 26.2 37 0.0013 25.8 2.3 26 55-80 292-318 (364)
88 3pvt_A Phenylacetic acid degra 26.1 36 0.0012 26.2 2.3 23 49-71 222-244 (311)
89 1elw_A TPR1-domain of HOP; HOP 26.1 81 0.0028 16.7 5.2 22 21-42 46-67 (118)
90 2jy5_A Ubiquilin-1; UBA, alter 25.9 76 0.0026 18.0 3.2 23 12-36 26-48 (52)
91 2nlv_A XISI protein-like; XISI 25.7 29 0.001 23.5 1.5 23 58-81 80-104 (112)
92 1iq0_A Arginyl-tRNA synthetase 25.4 11 0.00038 30.5 -0.7 23 51-73 570-592 (592)
93 3c8l_A FTSZ-like protein of un 25.4 37 0.0013 23.5 2.0 22 2-29 15-39 (122)
94 3k4g_A DNA-directed RNA polyme 25.0 36 0.0012 21.9 1.8 27 50-80 52-78 (86)
95 3mkq_A Coatomer beta'-subunit; 24.9 46 0.0016 25.2 2.6 21 17-37 753-773 (814)
96 3mab_A Uncharacterized protein 24.9 18 0.0006 23.5 0.3 17 57-73 15-31 (93)
97 2vq2_A PILW, putative fimbrial 24.3 1.2E+02 0.0041 18.1 5.1 32 13-44 147-178 (225)
98 2nwv_A XISI protein-like; YP_3 24.3 32 0.0011 23.4 1.5 23 58-81 82-106 (114)
99 3nr7_A DNA-binding protein H-N 24.3 73 0.0025 20.4 3.2 54 19-73 16-78 (86)
100 2dba_A Smooth muscle cell asso 24.2 1E+02 0.0035 17.3 5.8 21 21-41 73-93 (148)
101 3rkv_A Putative peptidylprolyl 24.2 1.2E+02 0.0041 18.1 4.2 25 21-45 105-129 (162)
102 1otr_A Protein CUE2; protein-p 23.8 54 0.0019 19.0 2.3 23 12-36 19-41 (49)
103 1dv0_A DNA repair protein HHR2 23.6 29 0.00099 19.6 1.0 23 12-36 17-39 (47)
104 2ff4_A Probable regulatory pro 23.6 2.1E+02 0.007 21.3 6.0 23 18-40 176-198 (388)
105 3mtu_E Head morphogenesis prot 23.4 64 0.0022 20.8 2.8 38 28-66 38-75 (77)
106 4f6o_A Metacaspase-1; rossmann 23.1 85 0.0029 24.4 3.9 46 31-89 299-345 (350)
107 2lni_A Stress-induced-phosphop 23.0 1E+02 0.0035 16.8 5.3 23 20-42 91-113 (133)
108 2zue_A Arginyl-tRNA synthetase 22.3 19 0.00064 29.7 0.0 24 50-73 606-629 (629)
109 3gfk_B DNA-directed RNA polyme 22.3 43 0.0015 21.2 1.7 23 49-71 55-77 (79)
110 3cf6_E RAP guanine nucleotide 22.2 45 0.0015 27.5 2.3 37 20-56 534-570 (694)
111 1j30_A 144AA long hypothetical 21.9 1.2E+02 0.0039 19.5 3.8 41 16-58 100-140 (144)
112 2crn_A Ubash3A protein; compac 21.7 86 0.0029 18.6 3.0 23 14-37 24-46 (64)
113 1coo_A RNA polymerase alpha su 21.6 65 0.0022 21.2 2.6 48 24-72 24-86 (98)
114 3d7q_A XISI protein-like; stru 21.3 29 0.001 23.5 0.8 22 58-80 80-103 (112)
115 3bvf_A Ferritin; iron storage, 21.2 1.1E+02 0.0039 20.5 3.8 38 19-58 118-155 (181)
116 2vyi_A SGTA protein; chaperone 20.9 1.1E+02 0.0038 16.4 6.5 32 13-44 80-111 (131)
117 4am5_A Bacterioferritin; metal 20.9 1.6E+02 0.0053 19.0 4.4 24 16-40 101-124 (159)
118 2l6j_A TPR repeat-containing p 20.8 1.1E+02 0.0038 16.4 5.1 54 13-66 38-92 (111)
119 2cpw_A CBL-interacting protein 20.5 78 0.0027 18.7 2.6 22 14-36 34-55 (64)
120 2o8r_A Polyphosphate kinase; s 20.4 27 0.00091 29.9 0.6 38 31-68 79-116 (705)
121 2dai_A Ubadc1, ubiquitin assoc 20.3 84 0.0029 19.7 2.8 22 14-37 44-65 (83)
No 1
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=100.00 E-value=7.3e-52 Score=289.14 Aligned_cols=77 Identities=58% Similarity=0.949 Sum_probs=75.2
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCccccCCCCC
Q psy3153 1 MNDLAQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETPEDLGYDKP 78 (89)
Q Consensus 1 lN~l~~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydkp 78 (89)
|||||+|||||+|+||+|||||||||||||+||||||+||+|||++ ++|||||+|||||||+||||+|||||||||.
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPtl~ELGI~t~EeLg~dk~ 109 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPEELGLDKV 109 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence 7999999999999999999999999999999999999999999998 8899999999999999999999999999983
No 2
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=1e-49 Score=290.87 Aligned_cols=77 Identities=58% Similarity=0.949 Sum_probs=75.3
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCccccCCCCC
Q psy3153 1 MNDLAQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETPEDLGYDKP 78 (89)
Q Consensus 1 lN~l~~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydkp 78 (89)
|||||+|||||+|+||+|||||||||||||+||||||+||+|||++ ++|||||+|||||||+||||+|||||||||.
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqElkPtl~ELGI~t~EeLg~dk~ 152 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPEELGLDKV 152 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence 7999999999999999999999999999999999999999999998 8899999999999999999999999999983
No 3
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=84.00 E-value=0.22 Score=35.43 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=32.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy3153 2 NDLAQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKC 43 (89)
Q Consensus 2 N~l~~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~ 43 (89)
|.|---==|++|.++..||+||. +|...||-||-.=..+.
T Consensus 23 NQLrEITGIqD~~~L~~ALkAsn--Gdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 23 NQLREITGIQDPSFLHEALKASN--GDITQAVSLLTDERVKE 62 (129)
Confidence 44444455889999999999999 99999999997655554
No 4
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.94 E-value=1.5 Score=28.94 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy3153 10 VPDPVIIIAALKAARRLNDYALTIRLLEM 38 (89)
Q Consensus 10 VP~P~ii~AALrAcRRvND~alAVR~lE~ 38 (89)
|-+|.++..||+|.+ +|+..||-||-.
T Consensus 37 iqD~~~L~~ALkas~--Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 37 INDAQILQQALKDSN--GNLELAVAFLTA 63 (80)
T ss_dssp CCCHHHHHHHHHHHT--SCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhcc--CCHHHHHHHHhc
Confidence 568999999999999 999999999854
No 5
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=72.33 E-value=13 Score=22.29 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=32.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
-=.+..+.+++..|+..|+.......+. ..|..+.+++.-.++.+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQ--PAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHH
Confidence 3345678889999999998887777654 456677777776666553
No 6
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=71.40 E-value=6.5 Score=24.06 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCccccCCC
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETPEDLGYD 76 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgyd 76 (89)
+.+...--....+.+++..|+..++.+-....+. .....+++.|+-..+-.+..|+...|-|
T Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (177)
T 2e2e_A 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQLVESINMAKLLQRRSDLEHHHHH 176 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3333344456678899999999998877766654 3345677777777666667776666544
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=70.96 E-value=5.2 Score=31.18 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=37.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHH
Q psy3153 6 QDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILG 56 (89)
Q Consensus 6 ~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lq 56 (89)
...+.|+.....+-+++|-|.+++..|.++|+.+|+..-......|.-++.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 456788888888888888888888888888888887554433456665554
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=64.47 E-value=7.3 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhh
Q psy3153 29 YALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLT 63 (89)
Q Consensus 29 ~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 63 (89)
+.-|+.++..||.+..++ .++|...++-++.-..
T Consensus 4 ~~dA~~yl~~VK~~F~~~-p~~Y~~FL~im~~~k~ 37 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKS 37 (77)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHH
Confidence 567999999999999986 6899998887775543
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.55 E-value=8.2 Score=24.57 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=32.6
Q ss_pred HHHHHHHHH---hhhhHHHHHHHHHHHHHHhc-------C-CcccchHHHHHhhh
Q psy3153 16 IIAALKAAR---RLNDYALTIRLLEMVQEKCG-------K-KKKVIWPYILGEIR 59 (89)
Q Consensus 16 i~AALrAcR---RvND~alAVR~lE~iK~K~~-------~-~~~~iY~~~lqElk 59 (89)
|...++-+| .+.||.+|+.+++++..... + ..++.|..+.|||.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~ 66 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEIN 66 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHH
Confidence 445566666 68999999999999987643 2 23467888888875
No 10
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=57.82 E-value=7.1 Score=29.69 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.5
Q ss_pred hHHHHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 51 WPYILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 51 Y~~~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
-...++.++..+++||+| +..|+|.++-++
T Consensus 320 a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i 350 (383)
T 3ox4_A 320 AEATIQAVRDLAASIGIPANLTELGAKKEDV 350 (383)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSTTTTCCGGGH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 456779999999999999 589999986443
No 11
>2nr4_A Conserved hypothetical protein; structural genomics, unknown function, flavoprotein, PSI-2, protein structure initiative; HET: FMN; 1.85A {Methanosarcina mazei} SCOP: b.45.1.4
Probab=56.29 E-value=15 Score=26.14 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHhcC-CcccchHHHHHhh
Q psy3153 14 VIIIAALKAARR-L---NDYALTIRLLEMVQEKCGK-KKKVIWPYILGEI 58 (89)
Q Consensus 14 ~ii~AALrAcRR-v---ND~alAVR~lE~iK~K~~~-~~~~iY~~~lqEl 58 (89)
.||+||..|.|= + ..+-.=++.+..+=.|||+ +.++.|.|+.+.+
T Consensus 162 aviEa~V~~tRl~~~~~~~~~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~ 211 (213)
T 2nr4_A 162 AVLEATVHATRYQLTGEEKYLELIRHYESLASKCGGDAEKKAMKLIYEAL 211 (213)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 689988877772 2 2355566777777799976 4456788887654
No 12
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=55.77 E-value=9.5 Score=26.20 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhcC-CcccchHHHHHhhhhhh
Q psy3153 20 LKAARRLNDYALTIRLLEMVQEKCGK-KKKVIWPYILGEIRPTL 62 (89)
Q Consensus 20 LrAcRRvND~alAVR~lE~iK~K~~~-~~~~iY~~~lqElkPtl 62 (89)
-+.--|..+|..|.-+||.++.-.+| ..++||..|+.|.|.-|
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHh
Confidence 34445889999999999999988888 34579999999988655
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.92 E-value=16 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~l 36 (89)
+..-+..||++|. ||...|+-+|
T Consensus 17 ~~~~a~~AL~~~~--~n~e~A~~~L 39 (43)
T 2g3q_A 17 TEEEAHNALEKCN--WDLEAATNFL 39 (43)
T ss_dssp CHHHHHHHHHHHT--SCHHHHHHHH
T ss_pred CHHHHHHHHHHhC--cCHHHHHHHH
Confidence 4567788999994 7899998876
No 14
>2iml_A Hypothetical protein; FMN binding, PSI-2, structural genomics, protein structure initiative; HET: FMN; 1.65A {Archaeoglobus fulgidus} SCOP: b.45.1.4
Probab=54.03 E-value=22 Score=25.21 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-hh--h-----hHHHHHHHHHHHHHHhcC-CcccchHHHHHhhh
Q psy3153 14 VIIIAALKAAR-RL--N-----DYALTIRLLEMVQEKCGK-KKKVIWPYILGEIR 59 (89)
Q Consensus 14 ~ii~AALrAcR-Rv--N-----D~alAVR~lE~iK~K~~~-~~~~iY~~~lqElk 59 (89)
.||+||.-|.| ++ + ++-.=++.+..+=.|||+ +.++.|.|+++.+.
T Consensus 137 avIEa~V~~TRl~~~~~~~~~~~~~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~~ 191 (199)
T 2iml_A 137 AVIEALVHATRYVAIKSDERRKELLERIHYYREIVQKCGSEREKRAFEIIMEKIG 191 (199)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 68898888877 23 2 256667778888899998 44568888887664
No 15
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4
Probab=53.32 E-value=20 Score=26.10 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH-hh---hhHHHHHHHHHHHHHHhcCC-cccchHHHHHhhh
Q psy3153 14 VIIIAALKAAR-RL---NDYALTIRLLEMVQEKCGKK-KKVIWPYILGEIR 59 (89)
Q Consensus 14 ~ii~AALrAcR-Rv---ND~alAVR~lE~iK~K~~~~-~~~iY~~~lqElk 59 (89)
.+|+|+..|.| .+ ..+-.=++.+..+=.|||++ .++.|.|+++.+.
T Consensus 171 avIEa~V~aTRl~~~~~~~l~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~~ 221 (233)
T 2ptf_A 171 AVIESLIAYTRAEFSDPLVLRERIAEMNRVARKVGGPREKEAMRRIIQALE 221 (233)
T ss_dssp HHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 67887776666 12 23555677788888999874 3345999887764
No 16
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=53.14 E-value=8.7 Score=24.03 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhh
Q psy3153 30 ALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLT 63 (89)
Q Consensus 30 alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 63 (89)
.-|+.++..||.++.++ .++|...++-++.-..
T Consensus 11 ~dA~~yl~~VK~rF~~~-p~~Y~~FL~im~~fk~ 43 (80)
T 2cr7_A 11 EDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKS 43 (80)
T ss_dssp CCSHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHh
Confidence 35889999999999986 6899988887776543
No 17
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=52.64 E-value=5.8 Score=26.79 Aligned_cols=9 Identities=78% Similarity=0.737 Sum_probs=8.4
Q ss_pred HHHHHHHHh
Q psy3153 17 IAALKAARR 25 (89)
Q Consensus 17 ~AALrAcRR 25 (89)
+||||||||
T Consensus 26 qAALKAA~R 34 (93)
T 1t23_A 26 QAALKAANR 34 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 699999999
No 18
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.64 E-value=32 Score=26.68 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3153 8 DGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 8 DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K 42 (89)
.+.|+.....+.+++|-+.+++..|.++|+.++.+
T Consensus 100 G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 35566666666667776677777777776666544
No 19
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.52 E-value=13 Score=20.67 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 14 VIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 14 ~ii~AALrAcRRvND~alAVR~l 36 (89)
.-+..||++| ||...|+-+|
T Consensus 24 ~~a~~AL~~~---~n~e~A~~~L 43 (47)
T 2ekk_A 24 EHAMEALLNT---STMEQATEYL 43 (47)
T ss_dssp HHHHHHHHHS---CSHHHHHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHH
Confidence 4556677776 6888888776
No 20
>2jv7_A CBP, calcium-binding protein; virulence factor, homodimer, all alpha helical, glycoprotein, secreted, metal binding protein; NMR {Ajellomyces capsulatus}
Probab=50.99 E-value=16 Score=23.89 Aligned_cols=44 Identities=20% Similarity=0.534 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhh-------hhhhCCCCccc
Q psy3153 25 RLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPT-------LTELGIETPED 72 (89)
Q Consensus 25 RvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPt-------l~ELGI~t~Ee 72 (89)
-+|||-.+|+.|+..|.-.+=. |-.-+.-|-|+ +.|||.+.|-+
T Consensus 8 A~~~~n~~v~~F~kAksA~~C~----~~~Cl~sLa~ssA~C~aA~aelG~~~~~D 58 (78)
T 2jv7_A 8 AFDKYNEAVRVFTQLSSAANCD----WAACLSSLSASSAACIAAVGELGLDVPLD 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHTTCCHHHHHHHHSSSSTTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCC----HHHHHHHHhhHHHHHHHHHHHcCCCcchh
Confidence 3799999999999999887665 44667777775 67777776654
No 21
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.25 E-value=12 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
+...+..||++|. ||...|+-+|-
T Consensus 42 ~~~~a~~AL~~t~--~nve~Ave~L~ 65 (73)
T 1wiv_A 42 AEDVARKALKASG--GDIEKATDWVF 65 (73)
T ss_dssp CHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 3455677888887 68899988764
No 22
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=49.67 E-value=6.3 Score=29.06 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K 42 (89)
--+.||.+|+|..+.-|+-|+..-
T Consensus 110 IA~~c~~l~Nfnsl~AIisgL~s~ 133 (271)
T 3qxl_A 110 IAKKLLELNNLHSLMSVVSALQSA 133 (271)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSH
T ss_pred HHHHHHhcCCchHHHHHHHHcccc
Confidence 345699999999999999887643
No 23
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=49.39 E-value=24 Score=22.19 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCc
Q psy3153 28 DYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETP 70 (89)
Q Consensus 28 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~ 70 (89)
++.-|+.++-.||.+..++ -++|...++-++.-..+ .|+|+
T Consensus 6 ~~~~A~~yv~kVK~rF~~~-p~~Y~~FL~il~~yk~~-~~d~~ 46 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLDH-PEIYRSFLEILHTYQKE-QLHTK 46 (85)
T ss_dssp HHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHT-TCSSS
T ss_pred cHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHc-ccccc
Confidence 4677999999999999986 78999999988865544 35444
No 24
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=49.22 E-value=37 Score=19.66 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHH------------------HHHhhhhhhhhhCCCC-cccc
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPY------------------ILGEIRPTLTELGIET-PEDL 73 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~------------------~lqElkPtl~ELGI~t-~EeL 73 (89)
+.+....-.+..+.+++..|+..++..-....+. ...+.+ +.+..+.+.+.+++.. .+++
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 159 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 159 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccchhhccccc
Confidence 4444444456778899999999998776655443 222211 1223345556666543 3777
Q ss_pred CCCCCcc
Q psy3153 74 GYDKPEL 80 (89)
Q Consensus 74 gydkpEl 80 (89)
+|..|+|
T Consensus 160 ~~~~p~~ 166 (166)
T 1a17_A 160 EYSGPKL 166 (166)
T ss_dssp SCC----
T ss_pred ccccCCC
Confidence 8887765
No 25
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=49.04 E-value=44 Score=20.56 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
-=.+..+.+++..|+..|+..-...++. ..|..+.+.+.-.++.|.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANX--PEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC--CcchHHHHHHHHHHHHHH
Confidence 3345667888888888888877777654 556667777776666654
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.86 E-value=8.3 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
++.+|+++|+||. ||...||..|=
T Consensus 24 d~~~I~~vL~a~~--gdvd~aI~~LL 47 (59)
T 1wgl_A 24 DQEVIRSVLEAQR--GNKDAAINSLL 47 (59)
T ss_dssp CHHHHHHHHTTTT--TCHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 4788999999987 78888887763
No 27
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.61 E-value=14 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
+...+..||++|. ||...|+-+|-
T Consensus 22 ~~~~a~~AL~~~~--~nve~A~e~L~ 45 (63)
T 1wji_A 22 SKEASRQALMDNG--NNLEAALNVLL 45 (63)
T ss_dssp CHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 4455677888886 58888988764
No 28
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=48.26 E-value=28 Score=23.35 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=31.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q psy3153 5 AQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCG 44 (89)
Q Consensus 5 ~~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~ 44 (89)
+-.|=||...+|..|...|++..+ .-+-+|.-||=.+..
T Consensus 94 ~~~~~iP~~vaInEaVelaK~~~~-~~~~~fVNgVLr~i~ 132 (149)
T 3r2d_A 94 IFLKSKEPGRVFIDIVDLVKKYAD-EKAGKFVNGVLSAIY 132 (149)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred HHcCCCCCeehHHHHHHHHHHhCC-CCccccchHHhhHHH
Confidence 345679999999999999999875 457888888877654
No 29
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=47.69 E-value=11 Score=22.99 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=18.5
Q ss_pred HhcCCcccchHHHHHhhhh------hhhhhCCC
Q psy3153 42 KCGKKKKVIWPYILGEIRP------TLTELGIE 68 (89)
Q Consensus 42 K~~~~~~~iY~~~lqElkP------tl~ELGI~ 68 (89)
-||.-...-|+.|++-++. +|++||+.
T Consensus 8 TCGkvi~~~we~y~~~~~~~~~~~~~LD~Lg~~ 40 (55)
T 1ef4_A 8 SCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLK 40 (55)
T ss_dssp CTTSCCHHHHHHHHHHHHHTCCHHHHHHHHTCS
T ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHHcCCc
Confidence 3666666677777766554 58888874
No 30
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=47.38 E-value=11 Score=27.00 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=20.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K 42 (89)
-.+.||.+|+|..+.-|+-|+..-
T Consensus 83 iA~~~~~l~Nfns~~aI~~gL~~~ 106 (240)
T 2ije_S 83 VADICRCLHNYNAVLEITSSINRS 106 (240)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSH
T ss_pred HHHHHHhcCCHhHHHHHHHHhccc
Confidence 346799999999999999998643
No 31
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=45.72 E-value=21 Score=20.28 Aligned_cols=43 Identities=16% Similarity=0.038 Sum_probs=23.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 21 KAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
.+..+.+++..|+..|+..-...... ......+++.-.+..||
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAAAQSR---GDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHHhc
Confidence 34556677777777777655544321 12234455555555554
No 32
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=45.50 E-value=22 Score=18.38 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~l 36 (89)
+..-...||++|. ||...|+-+|
T Consensus 17 ~~~~a~~AL~~~~--~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAAN--GDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHH
Confidence 4566678899884 5888888765
No 33
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=45.47 E-value=30 Score=21.96 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhh
Q psy3153 28 DYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLT 63 (89)
Q Consensus 28 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 63 (89)
.+.-|+.++-.||.++.++ -++|...++-++...+
T Consensus 9 ~~~~A~~YvnkVK~rF~~~-p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQ-PDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHh
Confidence 4677999999999999986 6899998888876654
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=44.71 E-value=56 Score=20.48 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=10.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q psy3153 20 LKAARRLNDYALTIRLLEMVQ 40 (89)
Q Consensus 20 LrAcRRvND~alAVR~lE~iK 40 (89)
-..+.+.+++..|+.+++...
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555555443
No 35
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=44.00 E-value=15 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHH------hhhhHHHHHHHHHH
Q psy3153 9 GVPDPVIIIAALKAAR------RLNDYALTIRLLEM 38 (89)
Q Consensus 9 lVP~P~ii~AALrAcR------RvND~alAVR~lE~ 38 (89)
.+|+|.-+..|-|.|| -.-|.++|++-|..
T Consensus 10 ~~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~ 45 (53)
T 2rkl_A 10 IMDRASKIEQIQKLAKYAISALNYEDLPTAKDELTK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 4688999999999999 46788898887653
No 36
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.96 E-value=22 Score=21.90 Aligned_cols=28 Identities=29% Similarity=0.180 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLEMVQE 41 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE~iK~ 41 (89)
++.+|++.|++|+ ||...||..|=.+..
T Consensus 33 D~~vI~~vL~a~~--G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 33 DYDIIECVLRANS--GAVDATIDQLLQMNL 60 (67)
T ss_dssp CHHHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHHHhcCC
Confidence 5789999999997 677888877654443
No 37
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.74 E-value=12 Score=21.23 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
+..-+..||++|. ||...|+-+|-
T Consensus 21 ~~~~a~~AL~~~~--~n~e~A~e~L~ 44 (49)
T 1ify_A 21 ERERVVAALRASY--NNPHRAVEYLL 44 (49)
T ss_dssp CHHHHHHHHHTTT--SCSHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 5667788888876 68888887763
No 38
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=42.86 E-value=23 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 11 PDPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 11 P~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
-+...+..||++|. ||...|+-+|-
T Consensus 41 F~r~~a~~AL~~~~--~nve~Ave~Ll 65 (73)
T 1vg5_A 41 FDRTQVEVALAAAD--DDLTVAVEILM 65 (73)
T ss_dssp CCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 35677888999887 78999987764
No 39
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=42.82 E-value=17 Score=22.83 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q psy3153 9 GVPDPVIIIAALKAARRLN 27 (89)
Q Consensus 9 lVP~P~ii~AALrAcRRvN 27 (89)
--|+|.+...|+++|+++|
T Consensus 151 ~KP~~~~~~~~l~~~~~lg 169 (240)
T 3smv_A 151 YKPNPNNFTYMIDALAKAG 169 (240)
T ss_dssp CTTSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 3599999999988877654
No 40
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=42.57 E-value=16 Score=27.83 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 52 PYILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 52 ~~~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
...+++++..++++|+| +..++|.++.++
T Consensus 336 ~~~~~~i~~l~~~lglP~~l~elgi~~~~i 365 (407)
T 1vlj_A 336 LKGIEAFKNWLKKVGAPVSLKDAGIPEEDI 365 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCSTGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 45678899999999999 579999986543
No 41
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=42.07 E-value=32 Score=19.60 Aligned_cols=45 Identities=16% Similarity=-0.058 Sum_probs=26.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCC
Q psy3153 21 KAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIE 68 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~ 68 (89)
.+..+.+++..|+..++..-...... --....+|+.-.+..+|..
T Consensus 49 ~~~~~~g~~~~A~~~~~~al~l~~~~---~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 49 KLYERLDRTDDAIDTYAQGIEVAREE---GTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhhhcC---CchhHHHHHHHHHHHcccc
Confidence 45567777888887777554443322 1234556666666666644
No 42
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=41.65 E-value=17 Score=23.10 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=18.8
Q ss_pred HhcCCcccchHHHHHhhhh-------hhhhhCCC
Q psy3153 42 KCGKKKKVIWPYILGEIRP-------TLTELGIE 68 (89)
Q Consensus 42 K~~~~~~~iY~~~lqElkP-------tl~ELGI~ 68 (89)
-||.-...-|+.|++-++. +|++||+.
T Consensus 9 TCGkvi~~~we~y~~~~~~g~l~~~~~LD~Lg~~ 42 (70)
T 1twf_J 9 SCGKVVGDKWESYLNLLQEDELDEGTALSRLGLK 42 (70)
T ss_dssp TTCCBCTTCHHHHHHHHHTSCCCHHHHHHHTTCC
T ss_pred CCCCChHHHHHHHHHHHHcCCCCHHHHHHHcCCc
Confidence 4777666777777765554 48888875
No 43
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=41.19 E-value=7.8 Score=23.64 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=13.3
Q ss_pred HhhhhhhhhhCCCCccccCCCC
Q psy3153 56 GEIRPTLTELGIETPEDLGYDK 77 (89)
Q Consensus 56 qElkPtl~ELGI~t~EeLgydk 77 (89)
+.++|+|+++|++..++...|+
T Consensus 15 ~~~~~~L~~~~~~~~~~vdid~ 36 (87)
T 1ttz_A 15 DQAVEALAQARAGAFFSVFIDD 36 (87)
T ss_dssp HHHHHHHHHTTCCCEEEEECTT
T ss_pred HHHHHHHHHHHHhheEEEECCC
Confidence 5667777777776444444443
No 44
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=40.97 E-value=18 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.7
Q ss_pred HHHHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 52 PYILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 52 ~~~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
...+++++..++++|+| +..++|.++-++
T Consensus 321 ~~~~~~i~~l~~~lglp~~l~~~gi~~~~~ 350 (386)
T 1rrm_A 321 NAAVEAVFALNRDVGIPPHLRDVGVRKEDI 350 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSSGGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHhcCCCHHHH
Confidence 45678899999999999 579999987554
No 45
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=40.52 E-value=8.4 Score=29.86 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHH--h--hhhHHHH--HHHHHHHHHHhcCCcccc---hHHHHHhhhhhhhhhCCCCccccCC
Q psy3153 11 PDPVIIIAALKAAR--R--LNDYALT--IRLLEMVQEKCGKKKKVI---WPYILGEIRPTLTELGIETPEDLGY 75 (89)
Q Consensus 11 P~P~ii~AALrAcR--R--vND~alA--VR~lE~iK~K~~~~~~~i---Y~~~lqElkPtl~ELGI~t~EeLgy 75 (89)
..|+|+++||+++. | +|+...- -++++.++. .+-.+--. .-.+++++--.+.++||+ +|++=+
T Consensus 142 ~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~-~g~~vVlmh~~d~~~~~~l~~~a~~~GI~-~e~IIl 213 (323)
T 4djd_D 142 KDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMV-HKHNIIARSPLDINICKQLNILINEMNLP-LDHIVI 213 (323)
T ss_dssp HHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHH-HTCEEEEECSSCHHHHHHHHHHHHTTTCC-GGGEEE
T ss_pred CCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHH-hCCeEEEEccchHHHHHHHHHHHHHcCCC-HHHEEE
Confidence 35899999999993 3 6765443 356666653 22110011 125777887888999997 455433
No 46
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=40.43 E-value=16 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=18.5
Q ss_pred HhcCCcccchHHHHHhhh------hhhhhhCCC
Q psy3153 42 KCGKKKKVIWPYILGEIR------PTLTELGIE 68 (89)
Q Consensus 42 K~~~~~~~iY~~~lqElk------Ptl~ELGI~ 68 (89)
-||.-...-|.+|++.++ -+|++||+.
T Consensus 9 TCGkvi~~k~~~y~~~~~~~~~~g~~LD~Lgl~ 41 (66)
T 4ayb_N 9 TCGSLIADKWQPFITRVNAGENPGKVLDDLGVK 41 (66)
T ss_dssp TTCCBCHHHHHHHHHHHHTTCCHHHHHHHSSCC
T ss_pred CCcHhHHHHHHHHHHHHhcCCCHHHHHHHhCCc
Confidence 366666667888876664 478888864
No 47
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=38.88 E-value=35 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.5
Q ss_pred ccchHHHHHhhhhhhhhhCCCCccccCC
Q psy3153 48 KVIWPYILGEIRPTLTELGIETPEDLGY 75 (89)
Q Consensus 48 ~~iY~~~lqElkPtl~ELGI~t~EeLgy 75 (89)
.+.-+..++.+.|+++++|+..|+.-++
T Consensus 190 ~~Lr~~w~~~v~~~l~~agL~~P~~~~~ 217 (249)
T 1otk_A 190 RTLRAAWEAEVFAGINEATLNVPQEQAY 217 (249)
T ss_dssp GGGHHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccc
Confidence 5789999999999999999999986544
No 48
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=38.01 E-value=43 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhh
Q psy3153 28 DYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTE 64 (89)
Q Consensus 28 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~E 64 (89)
.|.-|+.++-.||.+..++ -++|...++-++....+
T Consensus 6 ~~~dA~~YvnkVK~rF~d~-p~vY~~FL~IL~~yk~~ 41 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDH-PEIYRSFLEILHTYQKE 41 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHhc
Confidence 4667999999999999986 78999999888865544
No 49
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=37.62 E-value=19 Score=28.39 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy3153 21 KAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~K 42 (89)
+.||.+|+|..+.-|+-|+..-
T Consensus 301 ~~c~~l~Nfnsl~AIisgL~s~ 322 (490)
T 2ii0_A 301 QVFQELNNFNGVLEVVSAMNSS 322 (490)
T ss_dssp HHHHHTTBHHHHHHHHHHHTSH
T ss_pred HHHHHhCCHHHHHHHHHHhccc
Confidence 5799999999999999887643
No 50
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=36.57 E-value=38 Score=22.71 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCC
Q psy3153 11 PDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIET 69 (89)
Q Consensus 11 P~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t 69 (89)
+...|..||+..+.|.+++.. .+..|-.-++-...+|.+. .+-..++||+..
T Consensus 146 ~P~~iAaAaly~A~~~~~~~~---t~~ei~~~~~vs~~ti~~~----~~~l~~~l~~~~ 197 (200)
T 1ais_B 146 SPAGLVAAALYIASLLEGEKR---TQREVAEVARVTEVTVRNR----YKELVEKLKIKV 197 (200)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC---CHHHHHHHHTCCHHHHHHH----HHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCC---CHHHHHHHhCCCHHHHHHH----HHHHHHHcCCCC
Confidence 344577788988888888763 4455555566543333332 233445667654
No 51
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=36.02 E-value=26 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 52 PYILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 52 ~~~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
...+++|+..++++|+| +..++|.++-++
T Consensus 345 ~~~~~~i~~l~~~lglP~~l~~lgi~~~~i 374 (408)
T 1oj7_A 345 DAAIAATRNFFEQLGVPTHLSDYGLDGSSI 374 (408)
T ss_dssp HHHHHHHHHHHHHHTCCCSGGGGTCCSTTH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 45678899999999998 478999986554
No 52
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=35.12 E-value=66 Score=23.43 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 9 GVPDPVIIIAAL--KAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 9 lVP~P~ii~AAL--rAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
-||.|.=++.-| .|=|.|+..-.-+.=|| ++.... ++.|..+.++|..|+.||.
T Consensus 118 ~a~~paE~ireli~~AertV~kLqkeiD~LE---DeL~~e-Kek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 118 KVENPAEVIRELICYCLDTTAKNEKSIDDLE---EKVAHA-KEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 367776543333 45577888777776666 444333 5779999999999999983
No 53
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=34.96 E-value=69 Score=22.06 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCC
Q psy3153 22 AARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGI 67 (89)
Q Consensus 22 AcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI 67 (89)
++=|+.||..|.|.++.+-..=.+. .|=....+.|+-.+++=|+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n--~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQN--NQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhhH
Confidence 3458899999999999887766554 6777777777777776554
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=34.91 E-value=89 Score=21.13 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQE 41 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~ 41 (89)
+.+...-...-.+.+++..|..+|+..-.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444455555544444444
No 55
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=34.82 E-value=17 Score=21.52 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHH
Q psy3153 12 DPVIIIAALKAA 23 (89)
Q Consensus 12 ~P~ii~AALrAc 23 (89)
+|++|..|++-|
T Consensus 36 ~~elI~~A~~~a 47 (78)
T 2zc2_A 36 DPDLVRSALREA 47 (78)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 578888888777
No 56
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=34.77 E-value=61 Score=26.35 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHH---HHHHHhcCC---cccchHHHHHh-----hhhhhhhhCCCCccccC
Q psy3153 29 YALTIRLLE---MVQEKCGKK---KKVIWPYILGE-----IRPTLTELGIETPEDLG 74 (89)
Q Consensus 29 ~alAVR~lE---~iK~K~~~~---~~~iY~~~lqE-----lkPtl~ELGI~t~EeLg 74 (89)
++.+.|.|. +.......+ .+..|...+++ ....|+++||..|..+.
T Consensus 261 ~wra~~a~~~l~g~~~dy~~p~~~r~~s~~e~~~~Wv~~~~~~~L~~lGL~~P~~~~ 317 (491)
T 2inc_A 261 IWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWD 317 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCCTTHH
T ss_pred HHHHHHHHHhhhhHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 455666666 444333322 15678887777 78889999999988754
No 57
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=34.71 E-value=26 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=23.7
Q ss_pred HHHHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 52 PYILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 52 ~~~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
...+++++..++++|+| +..++|.++-++
T Consensus 325 ~~~~~~i~~l~~~~glp~~l~~~gi~~~~~ 354 (387)
T 3bfj_A 325 EKAIAAITRLSMDIGIPQHLRDLGVKETDF 354 (387)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 56788999999999998 578999986543
No 58
>3b5m_A Uncharacterized protein; structural genomics, unknown function, flavoprotein, PSI-2, structure initiative; 1.21A {Rhodopirellula baltica}
Probab=34.71 E-value=42 Score=23.66 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhcC-CcccchHHHHHhh
Q psy3153 14 VIIIAALKAARR----LNDYALTIRLLEMVQEKCGK-KKKVIWPYILGEI 58 (89)
Q Consensus 14 ~ii~AALrAcRR----vND~alAVR~lE~iK~K~~~-~~~~iY~~~lqEl 58 (89)
.++++|.-|.|- -..+-.=++.+..+=.|||+ +.++.|.|+++.+
T Consensus 142 ~viE~aV~~tRl~~~~~~~~~~~i~~~~~~v~k~gg~~e~ea~~~l~~~~ 191 (205)
T 3b5m_A 142 AVIEAAVAATRLHLLPPEEIEEELERARIAIEKTGGEPEREALQLIRRHV 191 (205)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 478888888873 23455556777778889976 4456777777655
No 59
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=34.64 E-value=17 Score=23.55 Aligned_cols=10 Identities=50% Similarity=0.461 Sum_probs=8.7
Q ss_pred HHHHHHHHhh
Q psy3153 17 IAALKAARRL 26 (89)
Q Consensus 17 ~AALrAcRRv 26 (89)
.||++||++|
T Consensus 69 sAAf~Ac~~L 78 (102)
T 2kou_A 69 DACLKAVHEL 78 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899999986
No 60
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=34.31 E-value=45 Score=19.01 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
+..-+..||++|- ||...||-+|-
T Consensus 25 ~~~~~~~AL~~t~--gnve~Ave~L~ 48 (53)
T 2knz_A 25 NREANLQALIATG--GDINAAIERLL 48 (53)
T ss_dssp CHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 4566778888887 58888888764
No 61
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=34.10 E-value=11 Score=25.80 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCC------------cccchHHHHHhh-------hhhhhhhC--CCCccccCCCC
Q psy3153 32 TIRLLEMVQEKCGKK------------KKVIWPYILGEI-------RPTLTELG--IETPEDLGYDK 77 (89)
Q Consensus 32 AVR~lE~iK~K~~~~------------~~~iY~~~lqEl-------kPtl~ELG--I~t~EeLgydk 77 (89)
-+|+|+.|..|..-- -.+-|.++-.++ .|.++..| |--.||||+|.
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL~G~eayef~~e~v~~e~g~e~~~l~~s~LkV~~ieELG~DA 81 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDA 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHHHHHTCCCCCCEETTEEEEECGGGTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHHHHHHHHhHhhccccchhhccCceEEEHHhcCCce
Confidence 478888888876410 125677777665 45566555 45578999884
No 62
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=33.11 E-value=21 Score=22.12 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.4
Q ss_pred chHHHHHhhhhhhhhhCCCCccc
Q psy3153 50 IWPYILGEIRPTLTELGIETPED 72 (89)
Q Consensus 50 iY~~~lqElkPtl~ELGI~t~Ee 72 (89)
.=+.-++||+-.|+++|++.+++
T Consensus 49 ~G~kSl~EI~~~L~~~gl~l~~~ 71 (73)
T 1z3e_B 49 LGRKSLEEVKAKLEELGLGLRKD 71 (73)
T ss_dssp CCHHHHHHHHHHHHHTTCCCC--
T ss_pred CCHHHHHHHHHHHHHhCCCCCCC
Confidence 34566899999999999987654
No 63
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=33.06 E-value=59 Score=21.26 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q psy3153 8 DGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCG 44 (89)
Q Consensus 8 DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~ 44 (89)
|=||...+|..|...|++..+ .-+-+|.-||=.+..
T Consensus 96 ~~iP~~vaInEaVelaK~~~~-~~~~~fVNgVL~~i~ 131 (142)
T 1tzv_A 96 KDIPIEVTIDEAIEIAKRYGT-ENSGKFVNGILDRIA 131 (142)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHCC-CcchhhHHHHHHHHH
Confidence 448999999999999999864 445688888777653
No 64
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.99 E-value=39 Score=20.69 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 14 VIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 14 ~ii~AALrAcRRvND~alAVR~lE 37 (89)
.-+..||++|.. ||...|+-+|-
T Consensus 24 ~~a~~AL~~t~n-~~ve~A~ewL~ 46 (74)
T 2dag_A 24 DACRKAVYYTGN-SGAEAAMNWVM 46 (74)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHH
Confidence 445556666653 46788877764
No 65
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=28 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE 37 (89)
..-+..||++|. ||...|+-+|-
T Consensus 23 ~~~a~~AL~~t~--~nve~A~e~L~ 45 (63)
T 2dak_A 23 RDQALKALRATN--NSLERAVDWIF 45 (63)
T ss_dssp HHHHHHHHHHTT--SCSHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHH
Confidence 455667777775 46777776653
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.36 E-value=34 Score=21.90 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHH-----------HHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 25 RLNDYALTIRLLEM-----------VQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 25 RvND~alAVR~lE~-----------iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
|+=.|=-=||+||. ++.+........|..++.++|-.++++.
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33345556777764 3344444444567777777776666553
No 67
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=32.20 E-value=34 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCccccCCC
Q psy3153 11 PDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETPEDLGYD 76 (89)
Q Consensus 11 P~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgyd 76 (89)
+...|..||+..+.|+++... ....|-..++-...+|-+.| ++| .++||...|++..-+
T Consensus 140 ~P~~IAaAaiylA~~~~~~~~---~~~~i~~~~~v~~~tI~~~~-~~l---~~~l~~~~p~~~~~~ 198 (207)
T 1c9b_A 140 SPISVAAAAIYMASQASAEKR---TQKEIGDIAGVADVTIRQSY-RLI---YPRAPDLFPTDFKFD 198 (207)
T ss_dssp CHHHHHHHHHHHHHHTSSSCC---CHHHHHHHHTCCHHHHHHHH-HHH---GGGHHHHSCSSCCCS
T ss_pred ChHHHHHHHHHHHHHHHCCCC---CHHHHHHHhCCCHHHHHHHH-HHH---HHHHHHhChHHHccc
Confidence 455677789999888888763 34445555555433333322 233 345566667776543
No 68
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=31.25 E-value=22 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHHHHhcCCcccchHHHHHhhhhhhhhhCCCC
Q psy3153 37 EMVQEKCGKKKKVIWPYILGEIRPTLTELGIET 69 (89)
Q Consensus 37 E~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t 69 (89)
+..|-+.=. .|+|.-+-+.|.=++||||+
T Consensus 8 ~~MK~ril~----S~~w~edviiPlSk~lgis~ 36 (126)
T 1nxh_A 8 RLMKRRILE----SYRWQEDVVKPLSRELEIDV 36 (126)
T ss_dssp HHHHHHHHT----SHHHHHHTTTTTTTTGGGTH
T ss_pred HHHHHHHHh----hchHHHHHHHHHHHHhCcCH
Confidence 344555433 49999999999999999984
No 69
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=30.83 E-value=68 Score=18.79 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy3153 10 VPDPVIIIAALKAARRLNDYALTIRLLEMVQEKC 43 (89)
Q Consensus 10 VP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~ 43 (89)
++.+.|...--.+..+++++..|+..++..-..-
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4567778777789999999999999998765433
No 70
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=30.18 E-value=28 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.8
Q ss_pred HHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 54 ILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 54 ~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
.++.++-.++++|+| +..|+|.++-++
T Consensus 289 ~~~~i~~l~~~lglP~~L~e~Gi~~~~i 316 (353)
T 3hl0_A 289 AGAGLFDFAARLGAPSSLAALGVGADDL 316 (353)
T ss_dssp HHHHHHHHHHHHTCCCCTGGGTCCGGGH
T ss_pred HHHHHHHHHHHcCCCccHHhcCCCHHHH
Confidence 467889999999999 589999986443
No 71
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.29 E-value=15 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=17.3
Q ss_pred hhhhhhhhCCCCccccCCCCCc
Q psy3153 58 IRPTLTELGIETPEDLGYDKPE 79 (89)
Q Consensus 58 lkPtl~ELGI~t~EeLgydkpE 79 (89)
+.-.|+.|||+ |+=+|||+-|
T Consensus 97 m~~mLk~L~Id-~~liGyD~ee 117 (122)
T 3viq_A 97 MSMFLNQFGVP-VHLMSFDEEN 117 (122)
T ss_dssp HHHHHHHTTCC-TTTSCEETTT
T ss_pred HHHHHHHcCCC-HHHcCCCCcc
Confidence 44567899999 8999999865
No 72
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=28.59 E-value=14 Score=23.88 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=12.9
Q ss_pred hhhhhhhhCCCCcccc
Q psy3153 58 IRPTLTELGIETPEDL 73 (89)
Q Consensus 58 lkPtl~ELGI~t~EeL 73 (89)
+.-.|.++||.|+|+|
T Consensus 16 ~e~~L~~vGI~s~e~L 31 (93)
T 3bqs_A 16 LEQDLIKAGIKTPVEL 31 (93)
T ss_dssp HHHHHHHTTCCSHHHH
T ss_pred HHHHHHHcCCCCHHHH
Confidence 4456789999999987
No 73
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.49 E-value=54 Score=19.41 Aligned_cols=25 Identities=12% Similarity=-0.044 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE 37 (89)
+..-+..||++|.. ||...|+-+|-
T Consensus 22 ~~~~a~~AL~~t~~-~nve~A~ewLl 46 (64)
T 1whc_A 22 PRGRAEKALALTGN-QGIEAAMDWLM 46 (64)
T ss_dssp CHHHHHHHHHHHTS-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 34566677777742 56888877764
No 74
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=28.31 E-value=13 Score=29.63 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=33.5
Q ss_pred HHHHHHHHH------HHHhhhhHHHHH-HHHHHHHHHhcCC-cc----cchHHHHHhhhhhhhhhCCCCccccCC
Q psy3153 13 PVIIIAALK------AARRLNDYALTI-RLLEMVQEKCGKK-KK----VIWPYILGEIRPTLTELGIETPEDLGY 75 (89)
Q Consensus 13 P~ii~AALr------AcRRvND~alAV-R~lE~iK~K~~~~-~~----~iY~~~lqElkPtl~ELGI~t~EeLgy 75 (89)
|++|.+|.+ +|+-+.+++.+. +|.+..+..-.+. .. ..+... -|+-.|.=|||++||.|-.
T Consensus 384 ~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ape~m~~ 456 (464)
T 3fnr_A 384 KAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAKNKMEH 456 (464)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCCSCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCchHHhhh
Confidence 455555543 566666666543 4444433322111 00 133334 6788888899999999843
No 75
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=28.10 E-value=43 Score=20.70 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHhhh
Q psy3153 31 LTIRLLEMVQEKCGKKKKVIWPYILGEIR 59 (89)
Q Consensus 31 lAVR~lE~iK~K~~~~~~~iY~~~lqElk 59 (89)
.++-||+.||.+.+++ +.|...++=|.
T Consensus 10 de~~Ff~kVK~~l~~~--~~Y~eFLk~ln 36 (75)
T 2ld7_B 10 TESLFFDKVRKALRSA--EAYENFLRCLV 36 (75)
T ss_dssp HHHHHHHHHHHHHCSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 5778999999999886 88988776443
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=27.90 E-value=72 Score=16.78 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCGK 45 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~ 45 (89)
+.+...--.+..+.++|..|+..++..-....+
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 344444445667788888888888777655554
No 77
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.89 E-value=1.7e+02 Score=22.40 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=46.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhh
Q psy3153 6 QDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTE 64 (89)
Q Consensus 6 ~~DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~E 64 (89)
+.|+.-.++++.+.++-|+..+|+......+..+..|.|-- +..-.+++|++-..+++
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc
Confidence 67888899999999999999999999999998888887653 55566777766555443
No 78
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=27.54 E-value=1.3e+02 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=28.8
Q ss_pred CCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC
Q psy3153 10 VPD--PVIIIAALKAARRLNDYALTIRLLEMVQEKCGK 45 (89)
Q Consensus 10 VP~--P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~ 45 (89)
-|. +.+...-..++++.+++..|+++++.......+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 455 677888889999999999999999887665443
No 79
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=27.09 E-value=23 Score=23.22 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHH
Q psy3153 8 DGVPDPVIIIAALKA 22 (89)
Q Consensus 8 DlVP~P~ii~AALrA 22 (89)
|-||++.+++|+|+.
T Consensus 47 dsV~e~~Lv~ailk~ 61 (83)
T 1ufz_A 47 DAVPDDILTEAILKH 61 (83)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHh
Confidence 589999999999874
No 80
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=26.64 E-value=27 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=13.6
Q ss_pred HHhhhhhhhhhCCCC
Q psy3153 55 LGEIRPTLTELGIET 69 (89)
Q Consensus 55 lqElkPtl~ELGI~t 69 (89)
+.|||.+|..||++-
T Consensus 22 ikelkdvl~~lgl~k 36 (110)
T 2rno_A 22 IKELKDILNQLGLPK 36 (110)
T ss_dssp HHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCCcc
Confidence 689999999999984
No 81
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.49 E-value=49 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLLEM 38 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~lE~ 38 (89)
+...+..||++|. ||...|+-+|-.
T Consensus 42 ~~~~A~~AL~~t~--gdve~A~e~L~s 66 (83)
T 1veg_A 42 DTVVAEAALRVFG--GNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHHHh
Confidence 4556667777776 677788777653
No 82
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=26.44 E-value=1.1e+02 Score=19.25 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCC
Q psy3153 20 LKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIE 68 (89)
Q Consensus 20 LrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~ 68 (89)
.+.|+..+|+.++- +|+.+-...+ +-.-|.+++.-..++.+|++
T Consensus 104 ~~~a~~~~D~~t~~-~l~~~~~e~e----e~h~~~l~~~l~~i~~~g~~ 147 (154)
T 3r2k_A 104 IALCEQHKDFVSRD-ILKAQLADTE----EDHAYWLEQQLGLIARMGLE 147 (154)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHHHH----HTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHCHH
Confidence 34566667776653 4444443311 22445666667777778763
No 83
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=26.43 E-value=63 Score=21.09 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy3153 8 DGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKC 43 (89)
Q Consensus 8 DlVP~P~ii~AALrAcRRvND~alAVR~lE~iK~K~ 43 (89)
|=||...+|..|...|++..+- -+-+|.-||=.+.
T Consensus 98 ~~iP~~vaInEaVelaK~~~~~-~~~~fVNgVLr~i 132 (141)
T 3d3b_A 98 SDVPYKVAINEAIELAKSFGAE-DSHKFVNGVLDKA 132 (141)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCT-THHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHCCC-CchHHHHHHHHHH
Confidence 4489999999999999987543 3347777766654
No 84
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.37 E-value=87 Score=18.22 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhh
Q psy3153 16 IIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTEL 65 (89)
Q Consensus 16 i~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~EL 65 (89)
+.-|=-|-|-|.-+...|--||. +.... ++.|..+.+++..|+.||
T Consensus 4 ~~~aefAERsV~KLek~ID~LEd---eL~~e-Kek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLED---ELYAQ-KLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHh-HHHHHHHHHHHHHHHHHH
Confidence 44566788889888888888874 33333 578999999999999887
No 85
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=26.30 E-value=45 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.5
Q ss_pred HHHHHhhhhhhhhhCCC-CccccCCC
Q psy3153 52 PYILGEIRPTLTELGIE-TPEDLGYD 76 (89)
Q Consensus 52 ~~~lqElkPtl~ELGI~-t~EeLgyd 76 (89)
...+++|+..++++|+| +..++|.+
T Consensus 314 ~~~i~~i~~l~~~lglP~~L~elGi~ 339 (387)
T 3uhj_A 314 RAEIEAMIRFCRSVGLPTKLADLGIV 339 (387)
T ss_dssp HHHHHHHHHHHHHHTCCCSGGGGTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCC
Confidence 34678899999999999 68999998
No 86
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=26.25 E-value=37 Score=25.72 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=21.8
Q ss_pred HHHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 54 ILGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 54 ~lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
..+.++-.++++|+| +..|+|.++-++
T Consensus 294 ~~~~i~~l~~~lglP~~L~e~Gi~~~~i 321 (358)
T 3jzd_A 294 AAATLFDLAQRHGAPVALRDIGMREEDL 321 (358)
T ss_dssp HHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 358889999999999 489999986543
No 87
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=26.20 E-value=37 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHhhhhhhhhhCCC-CccccCCCCCcc
Q psy3153 55 LGEIRPTLTELGIE-TPEDLGYDKPEL 80 (89)
Q Consensus 55 lqElkPtl~ELGI~-t~EeLgydkpEl 80 (89)
++.|+-.++++|+| +..|+|.++-++
T Consensus 292 ~~~i~~l~~~lglP~~L~e~Gi~~~~i 318 (364)
T 3iv7_A 292 LEGLQRLRLSVNAPKRLSDYGFEASGI 318 (364)
T ss_dssp HHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHcCCCCcHHHcCCCHHHH
Confidence 57788889999999 688999986443
No 88
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=26.12 E-value=36 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.5
Q ss_pred cchHHHHHhhhhhhhhhCCCCcc
Q psy3153 49 VIWPYILGEIRPTLTELGIETPE 71 (89)
Q Consensus 49 ~iY~~~lqElkPtl~ELGI~t~E 71 (89)
+.-+..++.+.|+++++|+..|+
T Consensus 222 eLR~~w~~~v~~~l~~~gL~~P~ 244 (311)
T 3pvt_A 222 ELRQRFVDNTVPQVEMLGMTVPD 244 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Confidence 56778999999999999999986
No 89
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=26.05 E-value=81 Score=16.69 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=11.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy3153 21 KAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~K 42 (89)
....+.+++..|+..++.+-..
T Consensus 46 ~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 46 AAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHh
Confidence 3445555666666555554433
No 90
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=25.85 E-value=76 Score=18.00 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~l 36 (89)
+..-+..||++|- ||...||-+|
T Consensus 26 ~~~~~~~AL~~t~--gn~e~A~e~L 48 (52)
T 2jy5_A 26 NREANLQALIATG--GDINAAIERL 48 (52)
T ss_dssp CHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHH
Confidence 3455677788776 5888888776
No 91
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=25.65 E-value=29 Score=23.53 Aligned_cols=23 Identities=30% Similarity=0.435 Sum_probs=17.1
Q ss_pred hhhhhhhhCCCCccc--cCCCCCccc
Q psy3153 58 IRPTLTELGIETPED--LGYDKPELW 81 (89)
Q Consensus 58 lkPtl~ELGI~t~Ee--LgydkpEla 81 (89)
|..-|-|+||| +|+ |||+.|+.-
T Consensus 80 Ia~eLv~~GVp-k~dIVLgF~~P~~R 104 (112)
T 2nlv_A 80 PAEELVMMGVP-REDIVLGLQAPYKR 104 (112)
T ss_dssp HHHHHHHTTCC-GGGEEETTSCGGGG
T ss_pred HHHHHHHcCCC-HHHEEEccCCcccc
Confidence 44557789998 565 899999753
No 92
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=25.42 E-value=11 Score=30.49 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhhhhCCCCcccc
Q psy3153 51 WPYILGEIRPTLTELGIETPEDL 73 (89)
Q Consensus 51 Y~~~lqElkPtl~ELGI~t~EeL 73 (89)
.....+-|+-.|.=|||++||.|
T Consensus 570 ~~a~~~vl~~~l~lLGi~~~e~M 592 (592)
T 1iq0_A 570 VQSLQRTLATGLDLLGIPAPEVM 592 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHHHhcCCCccccC
Confidence 45677888889999999999976
No 93
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=25.40 E-value=37 Score=23.47 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=15.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHH---hhhhH
Q psy3153 2 NDLAQDDGVPDPVIIIAALKAAR---RLNDY 29 (89)
Q Consensus 2 N~l~~~DlVP~P~ii~AALrAcR---RvND~ 29 (89)
||++|.| +-.||.|||| +-|..
T Consensus 15 ~DlhGqD------~TkAA~RAvrDAI~~nsl 39 (122)
T 3c8l_A 15 IDQHGQE------PTIAASRAVRNAIAHNAL 39 (122)
T ss_dssp EESSSSC------HHHHHHHHHHHHHTTCCC
T ss_pred ccccCcc------HHHHHHHHHHHHHhhhcc
Confidence 4667766 5689999998 45555
No 94
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=25.01 E-value=36 Score=21.95 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred chHHHHHhhhhhhhhhCCCCccccCCCCCcc
Q psy3153 50 IWPYILGEIRPTLTELGIETPEDLGYDKPEL 80 (89)
Q Consensus 50 iY~~~lqElkPtl~ELGI~t~EeLgydkpEl 80 (89)
.=+.-++||+-.|.++|++ +|.+-|.+
T Consensus 52 ~G~KSl~EI~~~L~~~GL~----~gm~l~~~ 78 (86)
T 3k4g_A 52 LGXXSLTEIXDVLASRGLS----LGMRLENW 78 (86)
T ss_dssp CCHHHHHHHHHHHHTTTCC----SSCCEESB
T ss_pred cCcccHHHHHHHHHHcCCC----cCCCcccC
Confidence 3456789999999999985 55555554
No 95
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=24.90 E-value=46 Score=25.18 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q psy3153 17 IAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 17 ~AALrAcRRvND~alAVR~lE 37 (89)
+.|++.++..|.+++|+.+=+
T Consensus 753 ~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 753 QGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHH
Confidence 445555666666666665433
No 96
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.85 E-value=18 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.4
Q ss_pred hhhhhhhhhCCCCcccc
Q psy3153 57 EIRPTLTELGIETPEDL 73 (89)
Q Consensus 57 ElkPtl~ELGI~t~EeL 73 (89)
.+.-.|.+.||.|+|+|
T Consensus 15 ~~e~~L~~~GI~t~~~L 31 (93)
T 3mab_A 15 VLEQDLIKAGIKTPVEL 31 (93)
T ss_dssp HHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHcCCCCHHHH
Confidence 34456789999999987
No 97
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=24.35 E-value=1.2e+02 Score=18.12 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCG 44 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~ 44 (89)
+.+...--.++.+.+++..|++.++..-....
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444455566677888888887777666554
No 98
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=24.29 E-value=32 Score=23.43 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=17.0
Q ss_pred hhhhhhhhCCCCccc--cCCCCCccc
Q psy3153 58 IRPTLTELGIETPED--LGYDKPELW 81 (89)
Q Consensus 58 lkPtl~ELGI~t~Ee--LgydkpEla 81 (89)
|..-|-|+||| +|+ |||+.|+.-
T Consensus 82 Ia~eLv~~GVp-k~dIVLgF~~P~~R 106 (114)
T 2nwv_A 82 IATELMRLGVT-NNDIVLAFHPPDVR 106 (114)
T ss_dssp HHHHHHHTTCC-GGGEEETTSCGGGG
T ss_pred HHHHHHHcCCC-HHHEEEccCCcccc
Confidence 44557789998 555 899999753
No 99
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.25 E-value=73 Score=20.40 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcCCccc---------chHHHHHhhhhhhhhhCCCCcccc
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEKCGKKKKV---------IWPYILGEIRPTLTELGIETPEDL 73 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K~~~~~~~---------iY~~~lqElkPtl~ELGI~t~EeL 73 (89)
-|||+-|==|+..---++|.+..-+..+..+ .-..=+++++-.|.+-||+ |+||
T Consensus 16 ~LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~-~eeL 78 (86)
T 3nr7_A 16 TLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID-PNEL 78 (86)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHH
Confidence 3455444445555444444444333332111 2344688899999999998 7776
No 100
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.22 E-value=1e+02 Score=17.26 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=10.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q psy3153 21 KAARRLNDYALTIRLLEMVQE 41 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~ 41 (89)
.+..+.++|..|+..++..-.
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHh
Confidence 344555555555555554433
No 101
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=24.19 E-value=1.2e+02 Score=18.07 Aligned_cols=25 Identities=12% Similarity=-0.064 Sum_probs=15.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcC
Q psy3153 21 KAARRLNDYALTIRLLEMVQEKCGK 45 (89)
Q Consensus 21 rAcRRvND~alAVR~lE~iK~K~~~ 45 (89)
.+..++++|..|+..|+..-....+
T Consensus 105 ~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 105 KARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 3455677777777777766555443
No 102
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.84 E-value=54 Score=19.05 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~l 36 (89)
++.+|..+|++|+ +|...||.+|
T Consensus 19 ~~~~ik~~L~~~~--Gd~d~Ai~~L 41 (49)
T 1otr_A 19 SKSKLQVHLLENN--NDLDLTIGLL 41 (49)
T ss_dssp CHHHHHHHHHHTT--TCSHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHH
Confidence 3667888888887 7888888875
No 103
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=23.62 E-value=29 Score=19.55 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 12 DPVIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 12 ~P~ii~AALrAcRRvND~alAVR~l 36 (89)
+...+..||.||. +|-..|.-+|
T Consensus 17 ~~~~a~~Al~a~~--~n~e~A~~~L 39 (47)
T 1dv0_A 17 PESLVIQAYFACE--KNENLAANFL 39 (47)
T ss_dssp CHHHHHHHHTTTT--SCHHHHHHHT
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHH
Confidence 4556667999998 7888887665
No 104
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=23.61 E-value=2.1e+02 Score=21.30 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy3153 18 AALKAARRLNDYALTIRLLEMVQ 40 (89)
Q Consensus 18 AALrAcRRvND~alAVR~lE~iK 40 (89)
....+..+.+++..|++.++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33455567889999998887763
No 105
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.41 E-value=64 Score=20.83 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhC
Q psy3153 28 DYALTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 28 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 66 (89)
||.+--+-+..+-+|+... ++.|..+-+++..|+.||.
T Consensus 38 ~~~~~EKTIDDLEDkL~~e-KEK~k~i~eeLDqTL~ELn 75 (77)
T 3mtu_E 38 NYGSFVSEYNDLEEKVAHA-KEENLNMHQMLDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence 5777777777788888765 7889999999999999873
No 106
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=23.13 E-value=85 Score=24.41 Aligned_cols=46 Identities=13% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCCCccccCCCC-CcccccCCcccC
Q psy3153 31 LTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIETPEDLGYDK-PELWCKSTDEFY 89 (89)
Q Consensus 31 lAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydk-pEla~~~~~d~~ 89 (89)
..-=|++++|. +. +..|..+++.+|..|.. .|.+ |+|....+.|+.
T Consensus 299 mTyafi~aL~~--~p--~~tY~~Ll~~~r~~L~~---------kysQ~PQLs~s~~~d~~ 345 (350)
T 4f6o_A 299 MSHAFIKVMTL--QP--QQSYLSLLQNMRKELAG---------KYSQKPQLSSSHPIDVN 345 (350)
T ss_dssp HHHHHHHHHHH--CC--CCBHHHHHHHHHHHHTT---------TCSCEEEEEESSCCCTT
T ss_pred hHHHHHHHHHH--CC--CCCHHHHHHHHHHHHHh---------cCCCCceecccCCCCCC
Confidence 33457788875 33 47899999999998874 4665 999888887763
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=23.04 E-value=1e+02 Score=16.82 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q psy3153 20 LKAARRLNDYALTIRLLEMVQEK 42 (89)
Q Consensus 20 LrAcRRvND~alAVR~lE~iK~K 42 (89)
-.+..+.+++..|++.|+.....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455566666666666555443
No 108
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=22.29 E-value=19 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.3
Q ss_pred chHHHHHhhhhhhhhhCCCCcccc
Q psy3153 50 IWPYILGEIRPTLTELGIETPEDL 73 (89)
Q Consensus 50 iY~~~lqElkPtl~ELGI~t~EeL 73 (89)
......+-|+-.|.=|||++||.|
T Consensus 606 L~~a~~~vL~~gL~lLGI~ape~M 629 (629)
T 2zue_A 606 LVMAVEQVLKNALYLMGIEAPERM 629 (629)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCccccC
Confidence 346778889999999999999976
No 109
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=22.29 E-value=43 Score=21.22 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.2
Q ss_pred cchHHHHHhhhhhhhhhCCCCcc
Q psy3153 49 VIWPYILGEIRPTLTELGIETPE 71 (89)
Q Consensus 49 ~iY~~~lqElkPtl~ELGI~t~E 71 (89)
..=+.-++||+-.|.++|++..+
T Consensus 55 n~G~kSl~EI~~~L~e~Gl~l~~ 77 (79)
T 3gfk_B 55 NLGRKSLEEVKAKLEELGLGLRK 77 (79)
T ss_dssp TCHHHHHHHHHHHHHHTTCCCC-
T ss_pred CCCHhHHHHHHHHHHHcCCCCCC
Confidence 44567799999999999998654
No 110
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=22.21 E-value=45 Score=27.51 Aligned_cols=37 Identities=3% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHH
Q psy3153 20 LKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILG 56 (89)
Q Consensus 20 LrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lq 56 (89)
-+.||.+|+|....-|+-|+..-.=.+-+..|..+-+
T Consensus 534 A~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~ 570 (694)
T 3cf6_E 534 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPS 570 (694)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCH
T ss_pred HHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCH
Confidence 4679999999999999998865433233334444333
No 111
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=21.86 E-value=1.2e+02 Score=19.55 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhh
Q psy3153 16 IIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEI 58 (89)
Q Consensus 16 i~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqEl 58 (89)
+....+.|+..+|+.++--|-+.+++-.. + ...|..+++.|
T Consensus 100 y~~~~~~A~~egd~~~~~~f~~i~~~E~~-H-~~~~~~~l~~i 140 (144)
T 1j30_A 100 YPGFAKVAREEGFPEVAEWFETLARAEKS-H-AEKFQNVLKQL 140 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
Confidence 34556778888888877655555555332 2 24455555544
No 112
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.70 E-value=86 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 14 VIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 14 ~ii~AALrAcRRvND~alAVR~lE 37 (89)
.-+..||++|.. .|...|+-+|-
T Consensus 24 ~~a~~AL~~t~n-~~~e~A~~wL~ 46 (64)
T 2crn_A 24 HTALKALAATGR-KTAEEALAWLH 46 (64)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHH
Confidence 445555555543 37888888775
No 113
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=21.62 E-value=65 Score=21.15 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=32.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhcC---------------CcccchHHHHHhhhhhhhhhCCCCccc
Q psy3153 24 RRLNDYALTIRLLEMVQEKCGK---------------KKKVIWPYILGEIRPTLTELGIETPED 72 (89)
Q Consensus 24 RRvND~alAVR~lE~iK~K~~~---------------~~~~iY~~~lqElkPtl~ELGI~t~Ee 72 (89)
+-+.+..+.||.+-.+|. .|- +.+..=+.-++||+-.|.++|+...-+
T Consensus 24 ~~Ie~L~LSvRs~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~Gl~l~~~ 86 (98)
T 1coo_A 24 RPVDDLELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 86 (98)
T ss_dssp SBGGGGTCCTTTHHHHHT-TTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCC
T ss_pred CcHHHhCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHcCccccCC
Confidence 567777777887777763 221 112334567899999999999986433
No 114
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=21.26 E-value=29 Score=23.53 Aligned_cols=22 Identities=36% Similarity=0.856 Sum_probs=16.1
Q ss_pred hhhhhhhhCCCCccc--cCCCCCcc
Q psy3153 58 IRPTLTELGIETPED--LGYDKPEL 80 (89)
Q Consensus 58 lkPtl~ELGI~t~Ee--LgydkpEl 80 (89)
|..-|-|+||| +|+ |||+.|+.
T Consensus 80 Ia~eLv~~GVp-k~dIVLgF~~P~~ 103 (112)
T 3d7q_A 80 IALELMEMGID-KQDIVIGFHTPKM 103 (112)
T ss_dssp HHHHHHTTTCC-GGGEEETTSCHHH
T ss_pred HHHHHHHcCCC-HHHEEEccCCccc
Confidence 44557789998 555 89998874
No 115
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=21.17 E-value=1.1e+02 Score=20.53 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHhh
Q psy3153 19 ALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEI 58 (89)
Q Consensus 19 ALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqEl 58 (89)
..+.|+..+|+.++--+-+-+++.++.. ..+..++..|
T Consensus 118 l~~~A~~~~D~~t~~~l~~~l~eqvEe~--~~l~~~l~~l 155 (181)
T 3bvf_A 118 IVDHAIKSKDHATFNFLQWYVAEQHEEE--VLFKDILDKI 155 (181)
T ss_dssp HHHHHHHTTCHHHHHHTHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHcCCHhHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3456777788877765555555544433 1244444443
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=20.94 E-value=1.1e+02 Score=16.40 Aligned_cols=32 Identities=13% Similarity=-0.130 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCG 44 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~ 44 (89)
+.+....-.++.+.+++..|+.+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 34444444566677777777777766655443
No 117
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=20.94 E-value=1.6e+02 Score=19.05 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3153 16 IIAALKAARRLNDYALTIRLLEMVQ 40 (89)
Q Consensus 16 i~AALrAcRRvND~alAVR~lE~iK 40 (89)
+..+.+.|+..+|+.++- ||+.+-
T Consensus 101 ~~~~~~~a~~~~D~~t~~-~l~~il 124 (159)
T 4am5_A 101 YQEGAAYAASVGDFPSKN-LFEELM 124 (159)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHH-HHHHHH
Confidence 344556788888888864 555443
No 118
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=20.79 E-value=1.1e+02 Score=16.37 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-cccchHHHHHhhhhhhhhhC
Q psy3153 13 PVIIIAALKAARRLNDYALTIRLLEMVQEKCGKK-KKVIWPYILGEIRPTLTELG 66 (89)
Q Consensus 13 P~ii~AALrAcRRvND~alAVR~lE~iK~K~~~~-~~~iY~~~lqElkPtl~ELG 66 (89)
+.+...-=.+..+.++|..|+..++..-....+. ....+....-.+.-+...+|
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456678899999999888776554432 11223444445555566666
No 119
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.50 E-value=78 Score=18.73 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q psy3153 14 VIIIAALKAARRLNDYALTIRLL 36 (89)
Q Consensus 14 ~ii~AALrAcRRvND~alAVR~l 36 (89)
.-+..||++|.. +|...|+-+|
T Consensus 34 ~~a~~AL~~t~~-~nve~A~ewL 55 (64)
T 2cpw_A 34 ARAQKALASTGG-RSVQTACDWL 55 (64)
T ss_dssp HHHHHHHHHTTT-SCHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHH
Confidence 445556666552 2788888776
No 120
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=20.43 E-value=27 Score=29.94 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHhhhhhhhhhCCC
Q psy3153 31 LTIRLLEMVQEKCGKKKKVIWPYILGEIRPTLTELGIE 68 (89)
Q Consensus 31 lAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~ 68 (89)
++-..|+.|..++....+++|..+-++|.|.|++=||-
T Consensus 79 tp~eql~~I~~~~~~l~~~q~~~~~~~l~p~L~~~gI~ 116 (705)
T 2o8r_A 79 ADAHILQAIRETVIRQDELYYRIFYDQILPTLEEHGIR 116 (705)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 45568888888888776788888888999999999973
No 121
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.31 E-value=84 Score=19.71 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q psy3153 14 VIIIAALKAARRLNDYALTIRLLE 37 (89)
Q Consensus 14 ~ii~AALrAcRRvND~alAVR~lE 37 (89)
.-+..||++| =||...|+-+|-
T Consensus 44 ~~a~~AL~~t--~~nve~A~ewL~ 65 (83)
T 2dai_A 44 NRATKALQLN--HMSVPQAMEWLI 65 (83)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCHHHHHHHHH
Confidence 4456677777 367888877764
Done!