RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3153
         (89 letters)



>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 105

 Score =  114 bits (288), Expect = 1e-35
 Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 1   MNDLAQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKVIWPYILGEIRP 60
           MN L   D VP+P II AAL+A RRLND+A  +R+LE+V++K G  K+ I+PY++ E+RP
Sbjct: 29  MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE-IYPYVIQELRP 87

Query: 61  TLTELGIETPEDLGYDK 77
           TL ELGI TPE+LG DK
Sbjct: 88  TLNELGISTPEELGLDK 104


>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
          demethylase 1, LSD1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 449

 Score = 24.9 bits (52), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 14 VIIIAA----LKAARRLNDYALTIRLLE 37
          VIII +    L AAR+L  + + + LLE
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLE 35


>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C
          virus (HCV), different isolates [TaxId: 11103]}
          Length = 138

 Score = 23.1 bits (49), Expect = 6.1
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 9  GVPDPVIIIAALKAARRLNDYALTIRLLEMVQEK----CGKKKKV 49
           VP P I   AL     +  Y   I L  +   +    C  KKK 
Sbjct: 4  TVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKC 48


>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 23.1 bits (48), Expect = 6.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 12 DPVII---IAALKAARRLNDYALTIRLLE 37
          D V++   I+ + AA+ L+D  L + +LE
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLE 29


>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia
          coli [TaxId: 562]}
          Length = 90

 Score = 22.0 bits (47), Expect = 9.8
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 1  MNDLAQDDGVPDPVIIIAALKAARRLNDYALTIRLLEMVQEKCGKKKKV 49
          + D+  +D +P P+ I       +    +   I L +  +E+     + 
Sbjct: 38 LWDVLMNDVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRF 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,252
Number of extensions: 15610
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 10
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)