BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3154
(101 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT
Sbjct: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL
Sbjct: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 92/98 (93%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
EQ P I+VKEPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLG+VEETVTT+EI
Sbjct: 6 EQAPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
DEETYEE+Y+TTKR+IPMLFVRGDGVILVSPP+ A+
Sbjct: 66 DEETYEEVYRTTKRTIPMLFVRGDGVILVSPPSMRAAI 103
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 89/95 (93%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E IP I+VKEPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLGD EETVTTVEI
Sbjct: 6 ENIPAITVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
DEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 66 DEETYEEVYKTTKRTIPMLFVRGDGVILVSPPLRA 100
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/96 (85%), Positives = 91/96 (94%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E+EQ+P I VKEPLDLIRLSLDE+++VKMRNER LRG+LHA+DQHLNMVLGD EETVTTV
Sbjct: 3 EEEQLPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 63 EIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMR 98
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/96 (84%), Positives = 91/96 (94%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E+EQ+P I VKEPLDLIRLSLDE+++VKMRNER LRG+LHA+DQHLNMVLGD EETVTTV
Sbjct: 3 EEEQMPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YKT+KR+IPMLFVRGDGVILVSPP R
Sbjct: 63 EIDEETYEEVYKTSKRTIPMLFVRGDGVILVSPPMR 98
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 91/96 (94%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+ EQ PT +V+EPLDL+RLSLDE+++VKMRNER LRG+LHAYDQHLNM+LGDVEETVT+V
Sbjct: 50 DGEQAPTTAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSV 109
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YK+TKRSIPMLFVRGDGVILVSPP R
Sbjct: 110 EIDEETYEEVYKSTKRSIPMLFVRGDGVILVSPPVR 145
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Megachile
rotundata]
Length = 103
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 92/99 (92%), Gaps = 1/99 (1%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E EQ+P I+VKEPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLG+ EETVTTV
Sbjct: 4 EAEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPN-RTP 99
EIDEETYEE+Y+TTKR+I MLFVRGDGVILVSPP+ R P
Sbjct: 64 EIDEETYEEVYRTTKRNISMLFVRGDGVILVSPPSMRAP 102
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 92/99 (92%), Gaps = 1/99 (1%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E EQ+P I+VKEPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLG+ EETVTTV
Sbjct: 4 ETEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPN-RTP 99
EIDEETYEE+Y+TTKR+I MLFVRGDGVILVSPP+ R P
Sbjct: 64 EIDEETYEEVYRTTKRNISMLFVRGDGVILVSPPSMRAP 102
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/94 (84%), Positives = 90/94 (95%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
EQ PT +V+EPLDL+RLSLDE+++VKMRNER LRG+LHAYDQHLNM+LGDVEETVT+VEI
Sbjct: 6 EQAPTTAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEE+YK+TKRSIPMLFVRGDGVILVSPP R
Sbjct: 66 DEETYEEVYKSTKRSIPMLFVRGDGVILVSPPVR 99
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/96 (84%), Positives = 90/96 (93%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E+EQ+P I VKEPLDLIRLSLDE+++VKMR ER LRG+LHA+DQHLNMVLGD EETVTTV
Sbjct: 3 EEEQMPIIPVKEPLDLIRLSLDEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 63 EIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMR 98
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 92/96 (95%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+ +Q+P+ +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTV
Sbjct: 4 DQDQVPSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEEIYK+TKR+IPMLFVRGDGVILVSPP R
Sbjct: 64 EIDEETYEEIYKSTKRNIPMLFVRGDGVILVSPPLR 99
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member [Tribolium
castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E IP+I+VKEPLDL+RLSLDER++VKMRN+R +RG+LHAYDQH+NM+L D EET+TTVEI
Sbjct: 6 ENIPSITVKEPLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
DEETYEE+Y+TTKR+IPMLFVRGDGVILVSPP RT
Sbjct: 66 DEETYEEVYRTTKRNIPMLFVRGDGVILVSPPMRT 100
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans morsitans]
Length = 102
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Query: 2 EDEQIPTI-SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
E+EQ + SVKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVTT
Sbjct: 4 EEEQAQVVLSVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTT 63
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
VEIDEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 64 VEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMR 100
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 89/96 (92%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+ + +P ++VKEPLDLIRLSLDER++VKMRNER LRGKLHAYDQHLNMVLGD EET+TTV
Sbjct: 4 DGDNVPVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+Y+T KR+IPMLFVRGDGVILVSPP R
Sbjct: 64 EIDEETYEEVYRTNKRNIPMLFVRGDGVILVSPPVR 99
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 87/94 (92%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E + ++VKEP DLIRLSLDER++VKMRNER LRGKLHAYDQHLNMVLGD EET+TTVEI
Sbjct: 6 ENVAVMTVKEPWDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEE+Y+TTKR+IPMLFVRGDGVILVSPP R
Sbjct: 66 DEETYEEVYRTTKRTIPMLFVRGDGVILVSPPVR 99
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 91/97 (93%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+++Q P + +EPLDLIRLSLDER++VKMRNER LRG+L+AYDQHLNM+LGDVEETVTTV
Sbjct: 5 QEQQAPVQNAEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTV 64
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EIDEET+EEIYK+TKR+IPMLFVRGDGVILVSPP RT
Sbjct: 65 EIDEETFEEIYKSTKRNIPMLFVRGDGVILVSPPMRT 101
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 90/93 (96%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
IP+I+VKEPLDL+RLSLDE+++VKMRN+R L+G+LHAYDQH+NM+L DVEET+TTVEIDE
Sbjct: 8 IPSITVKEPLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDE 67
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
ETYEE+YK+TKR+IPMLFVRGDGVILVSPP RT
Sbjct: 68 ETYEEVYKSTKRNIPMLFVRGDGVILVSPPIRT 100
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/96 (84%), Positives = 90/96 (93%), Gaps = 1/96 (1%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E+EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVTTV
Sbjct: 4 EEEQV-ILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 63 EIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMR 98
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 90/98 (91%), Gaps = 2/98 (2%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVT
Sbjct: 4 EEEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 63
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
TVEIDEETYEE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTTKRTIPMLFVRGDGVILVSPPMR 101
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 85/89 (95%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVTTVEIDEETY
Sbjct: 166 LPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETY 225
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 226 EEVYKTTKRTIPMLFVRGDGVILVSPPMR 254
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 89/98 (90%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+Q T V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVEI
Sbjct: 1 QQPQTAVVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEI 60
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
DEETYEEIYKTTKR+IPMLFVRGDGVILV+PP R A
Sbjct: 61 DEETYEEIYKTTKRNIPMLFVRGDGVILVAPPLRGGAF 98
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/97 (79%), Positives = 91/97 (93%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT
Sbjct: 1 MADQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+EIDEETYEEIYK+TKR+IPMLFV+GDGV+LV+PP R
Sbjct: 61 IEIDEETYEEIYKSTKRNIPMLFVQGDGVVLVAPPLR 97
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/95 (83%), Positives = 89/95 (93%), Gaps = 1/95 (1%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+P I+VKEPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLG+ EETVTTVEIDE
Sbjct: 1 VPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDE 60
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPN-RTP 99
ETYEE+Y+TTKR+I MLFVRGDGVILVSPP+ R P
Sbjct: 61 ETYEEVYRTTKRNISMLFVRGDGVILVSPPSMRAP 95
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 85/89 (95%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVTTVEIDEETY
Sbjct: 77 LPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETY 136
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EE+YKTTKR+IPMLFVRGDGVILVSPP R
Sbjct: 137 EEVYKTTKRTIPMLFVRGDGVILVSPPMR 165
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1 [Pan
troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Loxodonta
africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVE
Sbjct: 6 EQQTTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 2/101 (1%)
Query: 2 EDEQIPTIS--VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
ED+Q S V+EPLDLIRLSLDERV+VKMRNER LRG+LHAYDQHLNMVLG+VEETVT
Sbjct: 5 EDQQQAPASQTVEEPLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEETVT 64
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
VEIDEETYEEIYK TKR+IPMLFVRGDGVILVSPP R A
Sbjct: 65 AVEIDEETYEEIYKQTKRTIPMLFVRGDGVILVSPPLRAGA 105
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Danio rerio]
Length = 102
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVE
Sbjct: 6 EQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/96 (78%), Positives = 90/96 (93%), Gaps = 1/96 (1%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E++ P + + EPLD++RLSLDER++VKMRNER LRG+LHAYDQHLNMVLGDVEETVT+V
Sbjct: 6 ENQSAPCV-MNEPLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSV 64
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEET+EE+YKT++RSIPMLFVRGDGVILVSPP+R
Sbjct: 65 EIDEETFEEVYKTSRRSIPMLFVRGDGVILVSPPSR 100
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 2/98 (2%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVT
Sbjct: 4 ETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 63
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
TVEIDEETYEE+YKT KR+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 2/98 (2%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVT
Sbjct: 4 ETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 63
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
TVEIDEETYEE+YKT KR+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 2/98 (2%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLGD EETVT
Sbjct: 4 ETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 63
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
TVEIDEETYEE+YKT KR+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 89/94 (94%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EI
Sbjct: 13 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 72
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 73 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 106
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 EQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/97 (81%), Positives = 91/97 (93%), Gaps = 1/97 (1%)
Query: 2 EDEQIP-TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
E EQ P T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT
Sbjct: 4 EAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
VEIDEETYEE+YK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 64 VEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 4 EQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 63
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 64 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 98
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 89/94 (94%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EI
Sbjct: 1 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 60
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 61 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 94
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/97 (81%), Positives = 91/97 (93%), Gaps = 1/97 (1%)
Query: 2 EDEQIPTI-SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
E EQ PT +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT
Sbjct: 4 EVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 63
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
VEIDEETYEE+YK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 64 VEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 87/95 (91%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P +V+EPLDLIRLSLDER++VKMRN+R L+G+LHAYDQHLNM+LGDVEETVT VEIDEE
Sbjct: 11 PANTVEEPLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEE 70
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
TYEEIYK+TKRSI MLFVRGDGVILVSPP R+ L
Sbjct: 71 TYEEIYKSTKRSIQMLFVRGDGVILVSPPLRSGTL 105
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Takifugu
rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVE
Sbjct: 6 EQQPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEE+YK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q + +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVE
Sbjct: 8 EQQQSSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 67
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEE+YK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 68 IDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLR 102
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+L+AYDQHLNM+LGDVEETVTTVE
Sbjct: 6 EQQTTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 89/95 (93%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+ T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTTVE
Sbjct: 6 DQPQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 88/93 (94%)
Query: 5 QIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEID 64
Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EID
Sbjct: 1 QQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID 60
Query: 65 EETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 61 EETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 93
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 89/95 (93%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLD IRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/98 (80%), Positives = 88/98 (89%), Gaps = 2/98 (2%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLN+VLGD EETVT
Sbjct: 4 ETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVT 63
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
TVEIDEETYEE+YKT KR+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 89/93 (95%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++V+EPLDLIRLSLDER++VKMRNER L+G+L+AYDQHLNM+LG+VEETVT++EIDEET
Sbjct: 13 ALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEET 72
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
YEE+Y+TTKR+IPMLFVRGDGVILVSPP R+ A
Sbjct: 73 YEEVYRTTKRNIPMLFVRGDGVILVSPPMRSTA 105
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+L+AYDQHLNM+LGDVEETVTT+E
Sbjct: 6 EQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nomascus
leucogenys]
Length = 102
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 88/95 (92%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEEIYK+TKR+IPMLFV GDGV+LV+PP R
Sbjct: 66 TDEETYEEIYKSTKRNIPMLFVWGDGVVLVAPPLR 100
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 89/93 (95%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++V+EPLDLIRLSLDER++VKMRNER L+G+L+AYDQ+LNM+LG+VEETVT++EIDEET
Sbjct: 13 ALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEET 72
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
YEE+Y+TTKR+IPMLFVRGDGVILVSPP R+ A
Sbjct: 73 YEEVYRTTKRNIPMLFVRGDGVILVSPPMRSTA 105
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 88/93 (94%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++V+EPLDLIRLSLDER++VKMRNER L+G+L+AYDQHLNM+LG+V ETVT++EIDEET
Sbjct: 13 ALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEET 72
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
YEE+Y+TTKR+IPMLFVRGDGVILVSPP R+ A
Sbjct: 73 YEEVYRTTKRNIPMLFVRGDGVILVSPPMRSTA 105
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 85/90 (94%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETY
Sbjct: 8 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 67
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EEI +TTKR+IP LFVRGDGVILVSPP RT
Sbjct: 68 EEIVRTTKRTIPFLFVRGDGVILVSPPLRT 97
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/95 (77%), Positives = 88/95 (92%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VK+RN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFV GD V+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVWGDCVVLVAPPLR 100
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/94 (79%), Positives = 84/94 (89%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E EQ+P I VKEPLDLI+LSL+ER++VKMRNER LRGKLHA+DQHLNMVLGDVEE + V
Sbjct: 4 ESEQLPPIDVKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPP 95
EIDEETYEEIY+ KR+I MLFVRGDGVILVSPP
Sbjct: 64 EIDEETYEEIYRQKKRTIQMLFVRGDGVILVSPP 97
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 90/97 (92%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E E + +++KEP+DLIRLS+DER++VKMR++R LRG+LHA+DQHLNMVLG+ EET+TT+
Sbjct: 9 ETEPVSLVTIKEPVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTI 68
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+DEET+EE+YKTTKR+IPMLFVRGDGVILVSPP+ T
Sbjct: 69 EVDEETFEEVYKTTKRTIPMLFVRGDGVILVSPPSTT 105
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 85/90 (94%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETY
Sbjct: 8 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EEI +TT+R+IP LFVRGDGVILVSPP RT
Sbjct: 68 EEIVRTTRRAIPFLFVRGDGVILVSPPLRT 97
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 85/90 (94%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETY
Sbjct: 8 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EEI +TT+R+IP LFVRGDGVILVSPP RT
Sbjct: 68 EEIVRTTRRTIPFLFVRGDGVILVSPPLRT 97
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 85/91 (93%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETY
Sbjct: 31 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 90
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRTP 99
EEI +TT+R+IP LFVRGDGVILVSPP RT
Sbjct: 91 EEIVRTTRRTIPFLFVRGDGVILVSPPLRTA 121
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 9 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 68
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 69 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 97
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 85/92 (92%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDL+RLSLDER+ VKMRN+R LRG+LHAYDQHLNMVLGDVEET+TTVEID+ET+E
Sbjct: 13 TVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVEIDDETFE 72
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
E+YKT+KR IPML+VRGDGVILVSPP R +
Sbjct: 73 ELYKTSKRQIPMLYVRGDGVILVSPPLRVGGV 104
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 102
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 87/94 (92%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+Q T +V++PLDLIRLSL++R++VKMRN+R LR +LHAYDQHLNM+ GDVEETVTT+EI
Sbjct: 7 QQQTTNAVEKPLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEI 66
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 67 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 83/88 (94%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYEE
Sbjct: 16 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 75
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNRT 98
I +TTKR+IP LFVRGDGVILVSPP RT
Sbjct: 76 IVRTTKRTIPFLFVRGDGVILVSPPLRT 103
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TT+R++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTRRTVPFLFVRGDGVILVSPPLRT 96
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 85/91 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDER++VK+R++R LRGKLHA+DQHLNM+LGDVEET+TTVEID+ETYE
Sbjct: 8 TVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
EI +TTKR+I LFVRGDGVILVSPP RT A
Sbjct: 68 EIVRTTKRTIEFLFVRGDGVILVSPPLRTAA 98
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 84/93 (90%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++++P I VKEPLDLI+LSL+ER++VKMRNER LRGKLHA+DQHLNMVLGDVEE + VE
Sbjct: 32 NDKLPPIDVKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIVE 91
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPP 95
IDEETYEEIY+ KR+I MLFVRGDGVILVSPP
Sbjct: 92 IDEETYEEIYRQKKRTIQMLFVRGDGVILVSPP 124
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 85/89 (95%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE+VTTVEID+ETYE
Sbjct: 8 TVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +T++R++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTSRRTVPFLFVRGDGVILVSPPLRT 96
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 85/90 (94%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
++VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VT++EID+ETY
Sbjct: 11 VAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIEIDDETY 70
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EEI +T+KR+IP LFVRGDGVILVSPP RT
Sbjct: 71 EEIVRTSKRTIPYLFVRGDGVILVSPPLRT 100
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 87/94 (92%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E++ +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+L DVEET+TTVEI
Sbjct: 6 EEVAPNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEI 65
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
DEET+EE+++T KR++PM+F+RGDGVILVSPP R
Sbjct: 66 DEETFEELFRTNKRTVPMMFIRGDGVILVSPPLR 99
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 83/89 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE +TTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP R
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRA 96
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 83/89 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE +TTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI KT+KR +P LFVRGDGVILVSPP RT
Sbjct: 68 EIVKTSKRVVPYLFVRGDGVILVSPPLRT 96
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 83/89 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI + T+R++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRATRRTVPFLFVRGDGVILVSPPLRT 96
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER+ VKMRN++ LRG+LHAYDQ+ NM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+ KR+IPMLFVRGDGV+LV+P R
Sbjct: 66 IDEETYEEIYKSMKRNIPMLFVRGDGVVLVAPTLR 100
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 83/91 (91%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T +VKEPLDLIRLSLDER++VK+R ER LRG+LHAYDQHLNM+LG+VEET+TTVEID+ET
Sbjct: 7 TATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDET 66
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
YEEI KT KR IP LFVRGDGVILVSPP R+
Sbjct: 67 YEEIIKTQKRVIPFLFVRGDGVILVSPPLRS 97
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 84/91 (92%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDER++VK+R++R LRGKLHA+DQHLNM+LGDVEET+TTVEID+ETYE
Sbjct: 8 TVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
EI +TTKR+I LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTIEFLFVRGDGVILVSPPLRTAT 98
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 83/91 (91%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T +VKEPLDLIRLSLDER++VK+R ER LRG+LHAYDQHLNM+LG+VEET+TTVEID+ET
Sbjct: 7 TATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDET 66
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
YEEI KT KR IP LFVRGDG+ILVSPP R+
Sbjct: 67 YEEIIKTQKRVIPFLFVRGDGIILVSPPLRS 97
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 85/95 (89%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER+ VKMRN++ LRG+LHAYDQ+ NM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+ KR+IPMLF RGDGV+LV+P R
Sbjct: 66 IDEETYEEIYKSMKRNIPMLFFRGDGVVLVAPTLR 100
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 81/89 (91%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDERV+VK+R ER +RGKLHAYDQHLNM+LGDVEET+TTVEID+ETYE
Sbjct: 7 TVKEPLDLIRLSLDERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYE 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI KTTKR++ LFVRGD V LVSPP RT
Sbjct: 67 EIIKTTKRAVRFLFVRGDAVTLVSPPLRT 95
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 80/87 (91%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V+EPLDL+RLSLDER+ VK+RNER L G+LHA+DQHLNM+LGDVEETVT VEID+ETYEE
Sbjct: 16 VEEPLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDETYEE 75
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNR 97
IY+ KRSIPMLFVRGDGVILV+PP R
Sbjct: 76 IYRQVKRSIPMLFVRGDGVILVAPPLR 102
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLS++ER++VK+R++R LRGKLHA+DQHLNM+LGDVEE +TTVEID+ETYE
Sbjct: 8 TVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 82/88 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R +R LRG+LHAYDQHLNM+LG+VEET+T++EID+ETYE
Sbjct: 7 TVKEPLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEIDDETYE 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EI KT KR++P LFVRGDGVILVSPP R
Sbjct: 67 EIIKTNKRAVPFLFVRGDGVILVSPPLR 94
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 85/96 (88%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+DE + V+EPLDLIRLSLDE+++VKM+ R LRG LHA+D HLNM+LG+VEETVTT+
Sbjct: 9 DDEAEQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTL 68
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EIDEETYEE+YKTTKR+IPMLF+RGDGVILVSPP +
Sbjct: 69 EIDEETYEEVYKTTKRTIPMLFIRGDGVILVSPPQK 104
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLS++ER++VK+R++R LRGKLHA+DQHLNM+LGDVEE +TT+EID+ETYE
Sbjct: 8 TVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 81/89 (91%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDERV+VK+R +R +RGKLHAYDQHLNM+LGDVEET+TTVEID+ETYE
Sbjct: 7 TVKEPLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYE 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI KTTKR++ LFVRGD V LVSPP RT
Sbjct: 67 EIVKTTKRAVRYLFVRGDAVTLVSPPLRT 95
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 84/89 (94%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLS++ER++VK+R++R LRGKLHA+DQHLNM+LGDVEE +TT+EID+ETYE
Sbjct: 7 TVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYE 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 67 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 95
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 86/97 (88%), Gaps = 1/97 (1%)
Query: 2 EDEQIPT-ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
EDE + + V+EPLDLIRLSLDE+++VKM+ R LRG LHA+D HLNM+LG+VEETVTT
Sbjct: 6 EDEDVEQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTT 65
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+EIDEETYEE+YKTTKR+IPMLF+RGDGVILVSPP +
Sbjct: 66 LEIDEETYEEVYKTTKRTIPMLFIRGDGVILVSPPQK 102
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 83/89 (93%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LG+VEE T+VEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +T++R++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTSRRTVPYLFVRGDGVILVSPPLRT 96
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Cucumis sativus]
Length = 101
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 85/93 (91%), Gaps = 4/93 (4%)
Query: 10 SVKEPLDLIRLSLDERVHVK----MRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+VKEPLDLIRLSLDER++VK +R++R LRGKLHAYDQHLNM+LGDVEE+VTTVEID+
Sbjct: 8 TVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDD 67
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
ETYEEI +T++R++P LFVRGDGVILVSPP RT
Sbjct: 68 ETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 100
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 85/107 (79%), Gaps = 16/107 (14%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLH----------------AYDQHLNMVLG 52
I+VKEPLDLIRLSLDER++VK+R++R LRGKLH AYDQHLNM+LG
Sbjct: 8 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVSASSYFCLLILNLLMAYDQHLNMILG 67
Query: 53 DVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTP 99
DVEE VTTVEID+ETYEEI +TT+R+IP LFVRGDGVILVSPP RT
Sbjct: 68 DVEEIVTTVEIDDETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA 114
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 91/100 (91%), Gaps = 3/100 (3%)
Query: 1 MEDEQ---IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET 57
M DE P I+V+EPLDLIRLSLDER++VKMRNER LRG+LHAYDQHLNMVLG+VEET
Sbjct: 1 MADENETSAPVITVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEET 60
Query: 58 VTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
VTTVEIDEETYEE+Y+TTKR+IPMLFVRGDGVILVSPP R
Sbjct: 61 VTTVEIDEETYEEVYRTTKRNIPMLFVRGDGVILVSPPMR 100
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 81/89 (91%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLD+R++VK+R ER LRGKLHAYDQHLNMVLGDVEETVTTVE+DEET E
Sbjct: 14 TVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDE 73
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI K KR++ MLFVRGDGVILVSPP RT
Sbjct: 74 EIIKRRKRTVEMLFVRGDGVILVSPPVRT 102
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC 30864]
Length = 106
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDLI+LSLDER+ VKMR +R LRG+LHAYDQHLNM+L DVEETVTTVEIDEET+EE+ K
Sbjct: 21 PLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEMVK 80
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRT 98
TTKR +PMLFVRGDGVILVSPP R
Sbjct: 81 TTKREVPMLFVRGDGVILVSPPLRA 105
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 85/100 (85%), Gaps = 4/100 (4%)
Query: 2 EDEQIP----TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET 57
E +Q P T +V+EPLDLIRLSLDER++VKMRN+R +RG+LHA+DQHLNM+L VEET
Sbjct: 4 EQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEET 63
Query: 58 VTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
VTTVE+DEE +EE++K TKR IPMLFVRGD +ILV+PP R
Sbjct: 64 VTTVELDEENFEEMHKQTKRHIPMLFVRGDAIILVAPPLR 103
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 81/91 (89%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ +V+EPLDL+RLSLDERV+VKMRN+R LRG+L A+DQHLNMVL +VEET+TT E+DE+T
Sbjct: 11 SATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDT 70
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+EEIYK TKR +PMLFVRGD VILVSPP R
Sbjct: 71 FEEIYKQTKRVVPMLFVRGDSVILVSPPIRA 101
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/92 (70%), Positives = 81/92 (88%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+ + V+EPLDLIRLSLDER++VKMRN+R +RG+LHA+DQHLNM+L VEETVTTVE+DE
Sbjct: 10 VVSTGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDE 69
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
E +EE++K TKR IPMLFVRGD +ILV+PP R
Sbjct: 70 ENFEEMHKQTKRQIPMLFVRGDAIILVAPPLR 101
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 81/92 (88%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
I + V+EPLDLIRLSLDER++VKMRN+R +RG+LHA+DQHLNM+L VEETVTTVE+DE
Sbjct: 43 IVSTGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDE 102
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
E +EE++K TKR IPMLFVRGD +ILV+PP R
Sbjct: 103 ENFEEMHKQTKRQIPMLFVRGDAIILVAPPLR 134
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ V+EPLDLIRLSLDER++VKMRN+R +RG+LHA+DQHLNM+L VEETVTTVE+DEE
Sbjct: 45 STGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEEN 104
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+EE++K TKR IPMLFVRGD +ILV+PP R
Sbjct: 105 FEEMHKQTKRQIPMLFVRGDAIILVAPPLR 134
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 80/89 (89%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDL+RLSLDE+V+VKMRN+R LRG+L A+DQHLNMVL DVEET+TT E+DE+T+E
Sbjct: 13 TVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETITTREVDEDTFE 72
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EIY+ +KR +PMLFVRGD VILVSPP R
Sbjct: 73 EIYRQSKRVVPMLFVRGDSVILVSPPIRA 101
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 77/88 (87%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
V+EPLDLIRLSLDERV VKMR RVL G+LHAYDQHLNMVL DV ET+TT EIDEE+YE
Sbjct: 4 GVEEPLDLIRLSLDERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITTSEIDEESYE 63
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
EI KTT+R +PML+VRGDGVILV+PP R
Sbjct: 64 EIIKTTERKMPMLYVRGDGVILVAPPMR 91
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 82/93 (88%), Gaps = 4/93 (4%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDE+V+VK++ ER LRGKLHAYDQHLNM+LGDVEETVT+VEIDEET+E
Sbjct: 7 TVREPLDLIRLSLDEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEIDEETFE 66
Query: 70 EIYKTTK----RSIPMLFVRGDGVILVSPPNRT 98
EI K ++ R +P LFVRGDGVILVSPP R+
Sbjct: 67 EIIKASEGDSSRMVPYLFVRGDGVILVSPPLRS 99
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 81/91 (89%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ +V+EP+DL+RLSLDERV+VKMRN+R +RG+L A+DQHLNMVL +VEET+TT E+DE+T
Sbjct: 11 SATVEEPIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETITTREVDEDT 70
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+EEIY+ TKR +PMLFVRGD VILVSPP R
Sbjct: 71 FEEIYRQTKRVVPMLFVRGDSVILVSPPIRA 101
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 81/91 (89%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ +V+EPLDL+RLSLDE+V+VKMRN+R LRG+L A+DQHLNMVL +VEET+TT E+DE+T
Sbjct: 11 SATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDT 70
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+EEIY+ +KR +PMLFVRGD VILVSPP R
Sbjct: 71 FEEIYRQSKRVVPMLFVRGDSVILVSPPIRA 101
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 85/112 (75%), Gaps = 22/112 (19%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLH----------------------AYDQH 46
++VKEPLDLIRLSLDER++VK+R++R LRGKLH AYDQH
Sbjct: 11 VAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDLNGKIISASKYTEEDTLNVLPAYDQH 70
Query: 47 LNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
LNM+LGDVEE VT++EID+ETYEEI +T+KR+IP LFVRGDGVILVSPP RT
Sbjct: 71 LNMILGDVEEIVTSIEIDDETYEEIVRTSKRTIPYLFVRGDGVILVSPPLRT 122
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 77/91 (84%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ +V+EP+DL+RLSLDER+ VK+R+ R LRG+LHAYDQHLNMVLGDVEE T VEID+ET
Sbjct: 12 STTVEEPMDLVRLSLDERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDET 71
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
YEE+Y R+ PMLF+RGDGVILVSPP T
Sbjct: 72 YEEVYTKNTRTFPMLFIRGDGVILVSPPTET 102
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 80/84 (95%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
++EPLDL+RLSLDER++VKMRN+R L G+LH +DQHLNM++ +VEETVTT+E+DEET+EE
Sbjct: 14 IEEPLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEE 73
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
IY+TT+R+IPM+F+RGDGVIL+SP
Sbjct: 74 IYRTTQRTIPMIFIRGDGVILISP 97
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 79/89 (88%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPL+LI LSLDER++VK+R++R LRGKLHAYDQHLN+VLGDVEE VTTVEID+ +
Sbjct: 8 AVKEPLNLIWLSLDERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVEIDDLLFS 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ +TTKR++P LFVRGDGVILVSPP RT
Sbjct: 68 FLLQTTKRTVPFLFVRGDGVILVSPPLRT 96
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S++EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L +VEET+ VE DEET E
Sbjct: 10 SIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEETIKVVEKDEETDE 69
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI K KR+I MLFVRGDGVIL+SPP RT
Sbjct: 70 EIVKNIKRNIDMLFVRGDGVILISPPLRT 98
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L DVEET+ VE DEET E
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI + KR+I MLFVRGDGVIL+SPP RT
Sbjct: 68 EIIRNIKRNIKMLFVRGDGVILISPPLRT 96
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+++EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L DVEET+ VE DEET E
Sbjct: 8 TIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVEKDEETDE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI K+ KR I MLFVRGDGVIL+SPP R+
Sbjct: 68 EIVKSIKRKIKMLFVRGDGVILISPPLRS 96
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L DVEET+ VE DEET E
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI + KR+I MLF+RGDGVIL+SPP RT
Sbjct: 68 EIIRNIKRNIKMLFIRGDGVILISPPLRT 96
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDL+RLSLDERV+VK+RN+R LRGKLH+YDQHLNM+LG+VEE T E+DEETYE
Sbjct: 25 TVKEPLDLVRLSLDERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYE 84
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
EI K+ KRS+P LFVRGD V L+SP
Sbjct: 85 EIIKSNKRSVPYLFVRGDAVTLISP 109
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 78/89 (87%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDL+RLSLDERV+VK+R +R L G LHAYD HLNMVLG+VEET+T V+++EET E
Sbjct: 14 AVEEPLDLVRLSLDERVYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVDVNEETLE 73
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+ +T KR+ MLFVRGDGVILVSPP+RT
Sbjct: 74 EVIRTVKRTFEMLFVRGDGVILVSPPSRT 102
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
Length = 97
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 81/89 (91%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R +R LRGKLHAYDQHLNM+LG+VEE VTT EID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI KTTKR +P LFVRGDGVILVSPP R+
Sbjct: 68 EIVKTTKRQVPYLFVRGDGVILVSPPLRS 96
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 74/88 (84%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
++EPLDLIRLS+DERV+VK R +R LRGKLH YDQHLNM+LGDVEETVT+ EIDEET E+
Sbjct: 1 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQ 60
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNRT 98
I K R + MLFVRGD V+LVSPP RT
Sbjct: 61 IVKKQTRKVGMLFVRGDIVVLVSPPLRT 88
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 74/89 (83%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S+ EPLDL++LS+ ER++VK R +R LRG LHAYDQHLNMVL +VEETVT E+DEETYE
Sbjct: 3 SIDEPLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVTVQELDEETYE 62
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI K +KR + MLF+RGD VILV+PP RT
Sbjct: 63 EIIKQSKRQVEMLFIRGDAVILVAPPLRT 91
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV+EPLDL+RLSL+E+V VKMR +R L G LHAYDQH+NMVL +V ET+ TV++D+ET E
Sbjct: 5 SVEEPLDLVRLSLEEKVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGE 64
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+ KT KR +PML+VRGDGVILV+PP+R
Sbjct: 65 ELVKTAKRVLPMLYVRGDGVILVAPPHRA 93
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 66/68 (97%)
Query: 30 MRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89
MRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EIDEETYEEIYK+TKR+IPMLFVRGDGV
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGV 60
Query: 90 ILVSPPNR 97
+LV+PP R
Sbjct: 61 VLVAPPLR 68
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 65/66 (98%)
Query: 30 MRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89
MRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EIDEETYEEIYK+TKR+IPMLFVRGDGV
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGV 60
Query: 90 ILVSPP 95
+LV+PP
Sbjct: 61 VLVAPP 66
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 73/89 (82%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S+ EPLDLI+LS+ ER++VK R +R LRG L AYDQHLNMVL DVEET+T E+D ETYE
Sbjct: 3 SIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYE 62
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+ K +KR+I MLFVRGD VILV+PP RT
Sbjct: 63 ELIKQSKRTIEMLFVRGDVVILVAPPLRT 91
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 73/89 (82%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S+ EPLDLI+LS+ ER++VK R +R LRG L AYDQHLNMVL DVEET+T E+D ETYE
Sbjct: 3 SIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYE 62
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+ K +KR+I MLFVRGD VILV+PP RT
Sbjct: 63 ELIKQSKRTIEMLFVRGDVVILVAPPLRT 91
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
+++PLDLI L+LDE + VK+R +R LRGKL A+DQH+N+VL DVEET VE+D+ET EE
Sbjct: 2 IQQPLDLILLALDEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEE 61
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ K KR +PMLFVRGDGVILV+PP RT
Sbjct: 62 LIKAVKRKMPMLFVRGDGVILVAPPLRT 89
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 82/89 (92%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV+EPLDLIRLSLDER+HVK R ER LRGKLH+YDQHLNMVLGDVEETVTTVE+DE+TYE
Sbjct: 4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYE 63
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI +T+KRSI MLFVRGD VILVSPP RT
Sbjct: 64 EIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 70/83 (84%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+EI
Sbjct: 1 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 60
Query: 64 DEETYEEIYKTTKRSIPMLFVRG 86
DEETYEEIYK + + VR
Sbjct: 61 DEETYEEIYKVSPAGLLFDSVRS 83
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 71/92 (77%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P SV EP DLIRLS+ ERV+VK+R +R LRG LHAYD H+N++LGDVEET+ V+I+EE
Sbjct: 18 PVGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEE 77
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
T +E + KR MLFVRGD VILVSPP+ T
Sbjct: 78 TGKETVRVVKRQSEMLFVRGDSVILVSPPSST 109
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 70/92 (76%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P SV EP DLIRLS+ ERV+VK+R +R LRG LHAYD H+N++LGDVEET+ V+I+EE
Sbjct: 22 PLGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEE 81
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
T E + KR MLFVRGD VILVSPP+ T
Sbjct: 82 TGAETVRVVKRQSEMLFVRGDSVILVSPPSST 113
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 73/87 (83%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+P +V EPLDLIRLSLDE+V++K++ +R LRG LHAYDQHLNMVLG+VEET+ ++ID+
Sbjct: 1 MPPTTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDK 60
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILV 92
ET E+ K+T R I MLF+RGDGVILV
Sbjct: 61 ETNEQQMKSTTRKIGMLFLRGDGVILV 87
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYE 67
Query: 70 EIYKTTKRSIPMLFVRGDG 88
EI + KRSI + D
Sbjct: 68 EIVRVKKRSIEKWHQKSDS 86
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 70/77 (90%), Gaps = 1/77 (1%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETY
Sbjct: 8 IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 67
Query: 69 EEIYKTTKRS-IPMLFV 84
EEI + + + +P++F+
Sbjct: 68 EEIVRVSSFAFLPLVFI 84
>gi|335309474|ref|XP_003361652.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Sus
scrofa]
Length = 98
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 75/92 (81%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLD IRLSL+ER+ KMRN+R +G+LHAYD HLN++LGDVEET T++
Sbjct: 6 DQQQTTNTVQEPLDRIRLSLEERIDAKMRNDREAQGRLHAYDPHLNVILGDVEETAATID 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
+ +T+EEI K+TK++IPML V G GV+LV+P
Sbjct: 66 TEGKTHEEISKSTKQNIPMLSVWGGGVVLVAP 97
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RLSLDER++VKMR +R LRGKLHAYDQHLNMVLG+VEE VT VE DE+T+E
Sbjct: 8 NVDEPLDLLRLSLDERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVEYDEDTFE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E K TKR+I ML+VRGDGVILVSPP RT
Sbjct: 68 EHVKMTKRNIDMLYVRGDGVILVSPPLRT 96
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 70/92 (76%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P SV EP DLIRLS+ ERV+VK+R +R LRG LHAYD H+N++LGDVEET+ V++++E
Sbjct: 19 PLGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDE 78
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ E + KR MLFVRGD VILVSPP+ T
Sbjct: 79 SGSETVRVVKRQSEMLFVRGDSVILVSPPSST 110
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 73/91 (80%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T+ EPLDL+RLSLDER++VKMR +R LRGKLHAYDQH+NMVLG+VEE++T V +DE
Sbjct: 15 TVQTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEESITVVHLDENE 74
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EE + ++ MLFVRGDGVILV+PP RT
Sbjct: 75 DEESSEIVTKNYEMLFVRGDGVILVAPPKRT 105
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 77/89 (86%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRL+LDE+V+VK+R +R RG+LHAYDQHLNM+LGDVEE +T+ E DEET+E
Sbjct: 9 AVREPLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTETDEETFE 68
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E KTTKRS+P LF+RGD V LVSPP R+
Sbjct: 69 EFTKTTKRSVPFLFIRGDAVTLVSPPLRS 97
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 68/92 (73%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P SV EP DLIRLS+ ERV+VK+R +R LRG LHAYD H+N++LGDVEET+ V+I++E
Sbjct: 13 PVGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDE 72
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E + KR MLFVRGD VILVSPP T
Sbjct: 73 NGHETVRVVKRQSEMLFVRGDSVILVSPPAST 104
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+++EPLDLI+LS+DERV+VK RN+R LRGKLHA+DQHLNMVL DVEET+T+ E D+ET E
Sbjct: 1 TMEEPLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGE 60
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI RS+ MLFVRGD V+LVSPP RT
Sbjct: 61 EIVNKRTRSVGMLFVRGDIVVLVSPPLRT 89
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 71/94 (75%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
PT+ ++EPLD++R+SLDERV +K R +R + GKLHAYD HLNMVLGDVEE TTV D
Sbjct: 3 PTLLLQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPL 62
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
T +E K T R +P++F+RGD +ILV+P NR +
Sbjct: 63 TGDEQTKKTTRRLPLIFLRGDAIILVAPVNRNKS 96
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 69/88 (78%), Gaps = 2/88 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV EPLDL+RLSLDERV+VK+R +R ++G+LHAYD HLNMVL DVEETV V+IDE E
Sbjct: 12 SVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDIDET--E 69
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
E T K+ M+FVRGD VIL+SPP R
Sbjct: 70 EHISTKKKHSEMIFVRGDSVILISPPKR 97
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
Length = 177
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D Q + +E LDL+ ++L+E++ +K RN+R L G+LH YDQHLNM+LGD EETV +E
Sbjct: 6 DPQQTNNTAEERLDLLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
IDEETYEEI K+TK +IPMLF++GD V+ P
Sbjct: 66 IDEETYEEIDKSTKXNIPMLFIQGDDVLFAPP 97
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
PT+ ++EPLD++R+SLD+RV +K R +R + GKLHAYD HLNMVLGDVEE TTV D
Sbjct: 3 PTVLLQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPL 62
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
T +E K T R +P++F+RGD +ILV+P +R
Sbjct: 63 TGDEQTKKTTRRLPLIFLRGDAIILVAPVSR 93
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 69/85 (81%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++KEPLDL+RLSL+E++ VK+R +R L G LHAYD H+N++LG+V+E VT V++D T E
Sbjct: 4 AIKEPLDLVRLSLNEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLE 63
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+ KRS+PML++RGDGVIL+SP
Sbjct: 64 STTRFVKRSMPMLYIRGDGVILISP 88
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET-- 67
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ E
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPP 66
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ + KR +PMLFVRGDGVILVSPP+RT
Sbjct: 67 SQSVVNMAKRKVPMLFVRGDGVILVSPPSRT 97
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 5 EDAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
D E +EI +T K+ MLFVRGD V+L+SP
Sbjct: 65 D-ENEQEILRTIKKQEEMLFVRGDSVVLISP 94
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 67/90 (74%), Gaps = 1/90 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
V+EP DLIRLSL ERV +K+R +RVL G LHAYD H+NMVL DV ET+T VE +
Sbjct: 8 GVEEPFDLIRLSLSERVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANPDD 67
Query: 70 E-IYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E I +T KR+ MLFVRGDGV+LV+PP RT
Sbjct: 68 EPIIRTVKRNCEMLFVRGDGVVLVAPPART 97
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T ++EPLDL+RLSLDE+V VK+R +R LRG+LHAYD H N+VLGDVEET+ TV DEE
Sbjct: 7 TSPIQEPLDLVRLSLDEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYTVGDDEE- 65
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
++ KT K+ MLFVRGD V+L+SP ++
Sbjct: 66 -DDSVKTIKKQSEMLFVRGDSVVLISPQAQS 95
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 64/89 (71%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R + G LHAYD H+N++L DVEET+ V+ D +
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQ 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ KR + MLFVRGDGVILVSPP RT
Sbjct: 67 GVVNIAKRKMDMLFVRGDGVILVSPPART 95
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+ T ++EP DLIRLSL ERV VK+R +R L G LHAYD H+N+++ DVEET+ V+ D
Sbjct: 3 LSTSGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDS 62
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ + KR + MLFVRGDGVILVSPP RT
Sbjct: 63 VPNGQGLQVAKRKMEMLFVRGDGVILVSPPART 95
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 5 EGAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
DE E I +T K+ MLFVRGD V+L+SP
Sbjct: 65 DENEQEHI-RTIKKQEEMLFVRGDSVVLISP 94
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ ++EP DLIRLSL ERV+VK+R +R + G LHAYD H+N++L DVEET+ V++D
Sbjct: 5 STGIQEPFDLIRLSLSERVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPL 64
Query: 68 YE-EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E K KR + MLFVRGDGVILVSPP+RT
Sbjct: 65 EERRAVKMAKRKMEMLFVRGDGVILVSPPSRT 96
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 5 EDAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
D E +E +T K+ MLFVRGD V+L+SP
Sbjct: 65 D-ENEQETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M DE T +V+EPLDL++ SLDE+V+VKMRN+R LRGKLHAYDQHLNMVLGDVEE +TT
Sbjct: 1 MADED-ATHTVEEPLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIITT 59
Query: 61 VEIDEETYEEIYK 73
V++DEET EEI+K
Sbjct: 60 VDVDEETMEEIFK 72
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T S++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V++ E
Sbjct: 4 TSSIQEPFDLIRLSLSERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGA 63
Query: 68 YEE--IYKTTKRSIPMLFVRGDGVILVSPPNR 97
E KR + MLFVRGDGVILVSPP+R
Sbjct: 64 PESQGTVNVAKRKMGMLFVRGDGVILVSPPSR 95
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE-ETY 68
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N+++ DVEET+ V+ D T
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTG 66
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ + + KR + MLFVRGDGVILVSPP RT
Sbjct: 67 QGVLQVAKRKMEMLFVRGDGVILVSPPART 96
>gi|395516682|ref|XP_003762516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 58
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 55/56 (98%)
Query: 42 AYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
AYDQHLNM+LGDVEETVTT+EIDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 1 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 56
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RLSLDE V+VK+R +R L G+LHAYD+HLNMVLGD EE VT + +E +
Sbjct: 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD 65
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPP 95
+ KT ++ MLFVRGD VIL++PP
Sbjct: 66 KALKTIRKHYEMLFVRGDSVILIAPP 91
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RLSLDE V VK+R +R LRG+LHAYD H N+VLGDVEET+ VE D E+ +E+
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEED-ESEQEVI 72
Query: 73 KTTKRSIPMLFVRGDGVILVSP 94
KT K+ MLFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 3/95 (3%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 6 DDGAAPSFS--EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPN 96
E D E EE KT K+ MLFVRGD V+L+SP +
Sbjct: 64 EED-EAGEETIKTIKKQEEMLFVRGDSVVLISPQS 97
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE D E+ +EI
Sbjct: 13 SEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEED-ESEQEI 71
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPN 96
KT K+ MLFVRGD V+L+SP +
Sbjct: 72 IKTIKKQEEMLFVRGDSVVLISPQS 96
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 63/87 (72%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
++EP DLIRLSL ERV VK+R +R L G LHAYD H+NM+L DVEETV V+ E +
Sbjct: 7 IQEPFDLIRLSLSERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKP 66
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNR 97
+ KR I ML+VRGDGVILVSPP R
Sbjct: 67 SIRVAKRQIEMLYVRGDGVILVSPPQR 93
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 3/93 (3%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 6 DDGAAPSFS--EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + E EE KT K+ MLFVRGD V+L+SP
Sbjct: 64 E-ENEAGEETIKTIKKQEEMLFVRGDSVVLISP 95
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 63/82 (76%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
+ EP DLIR+SL ERV VK+R +R LRG LHAYD H+NM+L +VEET+ V+ DE + +
Sbjct: 6 IAEPFDLIRVSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASGDN 65
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
+ +T KR+ MLFVRGDGV+LV
Sbjct: 66 VVRTVKRNCDMLFVRGDGVVLV 87
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE D E+ +E+
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEED-ESEQEVI 72
Query: 73 KTTKRSIPMLFVRGDGVILVSP 94
KT K+ MLFVRGD V+L+SP
Sbjct: 73 KTIKKQEEMLFVRGDSVVLISP 94
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRL+LDERV+VK+R +R RG+LHAYDQHLNM+LG+VEET+T+ E DEET+E
Sbjct: 399 AVREPLDLIRLALDERVYVKLRGDREARGRLHAYDQHLNMILGEVEETITSTETDEETFE 458
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
E KTTKR +P LF+RGD V LVSPP R
Sbjct: 459 EFTKTTKRRVPYLFIRGDAVTLVSPPLR 486
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE D E+
Sbjct: 9 TAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEED-ES 67
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPN 96
E+ KT K+ MLFVRGD V+L+SP +
Sbjct: 68 EREMIKTIKKQEEMLFVRGDSVVLISPQS 96
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ E E
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGPE 66
Query: 70 E--IYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E KR + MLFVRGDGVILVSPP+RT
Sbjct: 67 EHSTVNIAKRKMDMLFVRGDGVILVSPPSRT 97
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE D EE
Sbjct: 13 VNEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEED-ANEEE 71
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
+ +T K+ MLFVRGD V+L+SP + PA
Sbjct: 72 VVRTVKKQSEMLFVRGDSVVLISP--QAPA 99
>gi|409079690|gb|EKM80051.1| hypothetical protein AGABI1DRAFT_72874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 93
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEETV V D E+ +
Sbjct: 8 GIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIV--DTESNQ 65
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
I KR MLFVRGDGVILVSPP+R+
Sbjct: 66 TI-NYAKRKWEMLFVRGDGVILVSPPSRS 93
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET-- 67
++EP DLIRLSL ERV VK+R +R + G LHAYD H+N++L DVEET+ V+ E +
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSPN 66
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E K KR + MLFVRGDGVILVSPP+RT
Sbjct: 67 SEGTVKVAKRKMNMLFVRGDGVILVSPPSRT 97
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL+ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ +E
Sbjct: 7 GIQEPFDLIRLSLNERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIMLVDSNEAAPP 66
Query: 70 EI-YKTTKRSIPMLFVRGDGVILVSPPNRT 98
KR + MLFVRGDGVILVSPP+RT
Sbjct: 67 AGRINVAKRKMDMLFVRGDGVILVSPPSRT 96
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY- 68
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ E +
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSAN 66
Query: 69 -EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ KR I MLFVRGDGVILVSPP RT
Sbjct: 67 GQNTVNIAKRKIDMLFVRGDGVILVSPPLRT 97
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEE 66
+ +++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V +ID
Sbjct: 4 SAAIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGA 63
Query: 67 T-YEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
++ KR + MLFVRGDGVILVSPP+R
Sbjct: 64 GEGQQTVNMAKRKMEMLFVRGDGVILVSPPSR 95
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
V+EP DLIRLSL ERV +K+R +R +RG LHAYDQH+NM+LG+VEET T V++DE +
Sbjct: 9 GVQEPFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLDESAAQ 68
Query: 70 EI--YKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
+ + KR I LFVRGD V+L++ P L
Sbjct: 69 PVGTLRQVKRQIDCLFVRGDSVVLLATRRSLPGL 102
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 68/88 (77%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP++L+R++LDERV VK++ +R L G LHAYDQHLN+++ D EET+ E+DEETYE
Sbjct: 9 QLEEPVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQKAELDEETYE 68
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+I + +R + +++VRGD V LVSP R
Sbjct: 69 QIVRQERRKLQLVYVRGDTVFLVSPLLR 96
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ E E
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPE 66
Query: 70 --EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
KR + MLFVRGDGVILVSPP+RT
Sbjct: 67 GKGTVNVAKRKMEMLFVRGDGVILVSPPSRT 97
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEETV V+ +
Sbjct: 8 GIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTES---N 64
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ KR MLFVRGDGVILVSPP+R+
Sbjct: 65 QTTNYAKRKWEMLFVRGDGVILVSPPSRS 93
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP DLIRLSL ERV VK+R +R L G LHAYD H+N++L DVEET+ V+ E E
Sbjct: 7 GIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAPE 66
Query: 70 --EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
KR + MLFVRGDGVILVSPP+RT
Sbjct: 67 GHATVNIAKRKMEMLFVRGDGVILVSPPSRT 97
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%), Gaps = 4/73 (5%)
Query: 2 EDEQIP----TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET 57
E +Q P T +V+EPLDLIRLSLDER++VKMRN+R +RG+LHA+DQHLNM+L VEET
Sbjct: 4 EQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEET 63
Query: 58 VTTVEIDEETYEE 70
VTTVE+DEE +EE
Sbjct: 64 VTTVELDEENFEE 76
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ V+EP DL+RLSL ERV VK++ ER L G LHAYD H+NM++ DVEET+ VE +E
Sbjct: 5 SAQVQEPFDLVRLSLSERVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESG 64
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+T KR++ MLFVRGD VILVSP R
Sbjct: 65 --STVQTMKRAMEMLFVRGDSVILVSPGAR 92
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E E V EPLDL+RLSL+E V VK+R +R L+G+LHAYD H N+VLGDV ETV V
Sbjct: 3 ESEDAGATPVNEPLDLVRLSLNEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVYVV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
DEE +E +T K+ MLFVRGD V+L+SP
Sbjct: 63 --DEEDEQENVRTVKKQSEMLFVRGDSVVLISP 93
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 64/86 (74%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RLSLDE V+VK+R +R L G+LHAYD+HLN VLGD EE VT + +E +
Sbjct: 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKD 65
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPP 95
+ KT ++ LFVRGD VIL++PP
Sbjct: 66 KALKTIRKHYEXLFVRGDSVILIAPP 91
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+V+GDVEET+ VE
Sbjct: 5 EDAGTTSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
+E EEI +T KR MLFVRGD V+L+SP
Sbjct: 65 -DENEEEIIRTIKRQEEMLFVRGDSVVLISP 94
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 68/92 (73%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P +++ EPLD+IRL+LDE +++K +N R L G+LHA+D+H NMVL DV ET+TTV+ D+
Sbjct: 3 PPVALHEPLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDN 62
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
+ E K TKR +FVRGD ++L+S ++T
Sbjct: 63 SKNETTKVTKRDNGTIFVRGDSLVLLSHYDKT 94
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D + T +V EPLDL+RLSLDE V VK+R +R LRG+LHAYD H N+VLG+VEET+
Sbjct: 1 MADTENGTSAVAEPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVS 93
V+ D+ ++ +T K++ MLFVRGD V++++
Sbjct: 61 VDEDD---DDTIRTVKKNSEMLFVRGDSVVIIA 90
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D + SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+
Sbjct: 1 MADVEAGDASVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
VE DE E + KT ++ MLFVRGD V+L+SP
Sbjct: 61 VEEDENEEETV-KTIRKQEEMLFVRGDSVVLISP 93
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV +P DLIRLSLDE V +K R+ R +RGKL AYDQHLNMV+ + +ET T V +D ET
Sbjct: 370 SVSQPFDLIRLSLDEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNN 429
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+ K R+ L++RGD VIL+SP RT
Sbjct: 430 EVKKNVVRNFEALYLRGDAVILISPLVRT 458
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D + SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+
Sbjct: 1 MSDIEAGDTSVAEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
VE DE E + KT ++ MLFVRGD V+L+SP
Sbjct: 61 VEEDENEEETV-KTIRKQEEMLFVRGDSVVLISP 93
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D+ + V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+
Sbjct: 1 MADDADGSSHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYG 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
VE D+ EE K+ R MLFVRGD V+L+SP
Sbjct: 61 VEEDD---EEEAKSVSRKSEMLFVRGDSVVLISP 91
>gi|119619949|gb|EAW99543.1| hCG1989832 [Homo sapiens]
Length = 68
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 36 LRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPP 95
HAYDQHLNM+LGD+EETVTT+EIDEETYEEIYK K +IPMLFV+GD V+LV+PP
Sbjct: 5 FEADYHAYDQHLNMILGDMEETVTTIEIDEETYEEIYKPMKWNIPMLFVQGDVVVLVAPP 64
Query: 96 NR 97
R
Sbjct: 65 LR 66
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
+ EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDV ETV V+ D+E E
Sbjct: 12 IDEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGET 71
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ KT + MLFVRGD V+L+SP
Sbjct: 72 L-KTIHKKSEMLFVRGDSVVLISP 94
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RL +DE V VK+R +R L+G+LHAYD H N+VLGDVEET+ E D++ E
Sbjct: 9 EPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRV 68
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRT 98
+T K+ MLF+RGD V+L++P T
Sbjct: 69 RTIKKQSEMLFIRGDSVVLIAPAEGT 94
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
ED P++S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 5 EDAGGPSVS--EPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
E DE E + +T K+ MLFVRGD V+L+SP
Sbjct: 63 EEDENEEETL-RTIKKQEEMLFVRGDSVVLISP 94
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RL +DE V VK+R +R L+G+LHAYD H N+VLGDVEET+ + +EE E
Sbjct: 9 EPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRV 68
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
+T K+ MLFVRGD V+L++P
Sbjct: 69 RTVKKQSEMLFVRGDSVVLIAPA 91
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE DE E
Sbjct: 11 SVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEE 70
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+ +T K+ MLFVRGD V+L+SP
Sbjct: 71 TL-RTIKKQEEMLFVRGDSVVLISP 94
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
PT V+EP DLIRLSL+ERV VK+R +R L G LHAYD H+NM++ DVEET+ V++ +
Sbjct: 4 PTSGVQEPFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPAD 63
Query: 67 TY----EEIYKTTKRSIPMLFVRGDGVILV 92
K KR + MLFVRGDGVILV
Sbjct: 64 GVLLPGAGSIKVAKRRLEMLFVRGDGVILV 93
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V+ D++
Sbjct: 10 AVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEV 69
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
++ +K+S MLFVRGD V+L+SP
Sbjct: 70 KLQTVSKKS-EMLFVRGDSVVLISP 93
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RL +DE V VK+R +R L+G+LHAYD H N+VLGDVEET+ E +++ E
Sbjct: 9 EPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEEDDDQEPRV 68
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRT 98
+T K+ MLFVRGD V+L++P T
Sbjct: 69 RTVKKQSEMLFVRGDSVVLIAPAEGT 94
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 8/95 (8%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EP DLIRLSL ERV+VK+R +R L G LHAYD H+N+++ DVEE++ VE E
Sbjct: 9 AVQEPFDLIRLSLSERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVENPENPEN 68
Query: 70 EIYKTTKRSIPMLFVRGDGVILV--------SPPN 96
K KR++ MLFVRGDGVILV SPP+
Sbjct: 69 PNVKVAKRNVEMLFVRGDGVILVRVQTLIVLSPPH 103
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RLSL+E V VK+R +R L+G+LHAYD H N+VLGDV ETV V DEE E+
Sbjct: 12 VNEPLDLVRLSLNEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVV--DEED-ED 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+T K+ MLFVRGD V+L+SP
Sbjct: 69 NVRTVKKQSEMLFVRGDSVVLISP 92
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE DE E
Sbjct: 12 SVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDDENEEE 71
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
I +T K+ MLFVRGD V+L+SP
Sbjct: 72 TI-RTIKKQEEMLFVRGDSVVLISP 95
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RLSL+E V VK+R +R L+G+LHAYD H N+VLGDV ETV V DEE E+
Sbjct: 12 VNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYLV--DEED-ED 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+T K+ MLFVRGD V+L+SP
Sbjct: 69 NVRTVKKQSEMLFVRGDSVVLISP 92
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RL +DE V +K+R +R L+G+LHAYD H N+VLGDVEET+ E D++ E
Sbjct: 9 EPLDLVRLCIDEIVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRV 68
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
+T K+ MLF+RGD V+L++P
Sbjct: 69 RTVKKQSEMLFIRGDSVVLIAPA 91
>gi|261189603|ref|XP_002621212.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239591448|gb|EEQ74029.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239613021|gb|EEQ90008.1| LSM domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 113
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 16/100 (16%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLH---------------AYDQHLNMVLGDVEE 56
EPLDL+RLSLDE V VK+R +R L+G+LH AYD H N+VLGDVEE
Sbjct: 13 SEPLDLVRLSLDEVVFVKLRGDRELKGRLHVSGSGIPAIVVDLRMAYDSHCNLVLGDVEE 72
Query: 57 TVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPN 96
T+ VE ++E+ +EI KT K+ MLFVRGD V+L+SP +
Sbjct: 73 TIYIVE-EDESEQEIIKTIKKQEEMLFVRGDSVVLISPQS 111
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 5 EDAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
DE +E +T K+ MLFVR G + P R L
Sbjct: 65 DENE-QETLRTIKKQEEMLFVR--GAFCDAVPGRARGL 99
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 60/83 (72%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EP+DLIRLSLDE+V+VK R +R L G L+AYD H+NMVLG+V+ET + IDE T EE
Sbjct: 16 EPIDLIRLSLDEKVNVKCRGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEEST 75
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
R I MLF+RGD VILV P
Sbjct: 76 MKVTRRIEMLFLRGDLVILVKPA 98
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RLSLDE V V++R +R L+G+LHAYD H N+VLG+VEET+ T+E D+E EE
Sbjct: 12 VSEPLDLVRLSLDEIVFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEG-EE 70
Query: 71 IYKTTKRSIPMLFVRG 86
KTTK+ MLFVRG
Sbjct: 71 TVKTTKKQSDMLFVRG 86
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 1 MEDEQIPTIS-VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
M D + P V EPLDL+RLSL+E V VK+R +R L+G+LHAYD H N+VLG+V ET+
Sbjct: 1 MADTEEPGADPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGEVTETI- 59
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
++ EE E +T K+ MLFVRGD V+L+SP
Sbjct: 60 -YQVAEEAGGEDVRTLKKQSEMLFVRGDSVVLISP 93
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E+ P++S EPLDL+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 6 EEAPSVS--EPLDLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE- 62
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+E +E KT R MLFVRGD V+L+SP +R
Sbjct: 63 -DEENDEEVKTISRKSEMLFVRGDSVVLISPQSR 95
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE D E E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEED-EAGE 70
Query: 70 EIYKTTKRSIPMLFVRG 86
E KT K+ MLFVRG
Sbjct: 71 ETVKTIKKQEEMLFVRG 87
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV EP+DL+RL LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+ V+ ++ +
Sbjct: 10 SVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADED 69
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
++ KT R MLFVRGD V+L+SP R+
Sbjct: 70 DL-KTISRKSEMLFVRGDSVVLISPYTRS 97
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
SV++PLDLIRL+LDE V++K + R + GKLHAYD+H N++L D ET+T + D ET
Sbjct: 6 SVQQPLDLIRLTLDEYVYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGT 65
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
E ++ +LFVRGD +ILVSP N+
Sbjct: 66 ESTSVNTKNSDVLFVRGDSIILVSPKNQ 93
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ VE
Sbjct: 5 EGAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEE 64
Query: 64 DEETYEEIYKTTKRSIPMLFVR 85
DE E I +T K+ MLFVR
Sbjct: 65 DENEQEHI-RTIKKQEEMLFVR 85
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLGDVEET+ V+ DEE +E
Sbjct: 11 VAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDDDEEEGDE 70
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ KT R MLFVRGD V+L+SP
Sbjct: 71 V-KTISRKSEMLFVRGDSVVLISP 93
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 6 DDGAAPSFS--EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIV 63
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRG 86
E + E EE KT K+ MLFVRG
Sbjct: 64 E-ENEAGEETIKTIKKQEEMLFVRG 87
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 63/87 (72%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
KEP+D+IR++LDERV++K + R + G+LHAYD+H NM+L D ET T+VE+D T +E+
Sbjct: 3 KEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEV 62
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPNRT 98
T + ++FVRGD +IL+S N T
Sbjct: 63 TTITSKDSGVVFVRGDALILLSHANST 89
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D+ T V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+
Sbjct: 1 MADDADGTSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYG 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
V+ +++ E KT R MLFVRGD V+L+SP
Sbjct: 61 VDEEDDEEEA--KTISRKSEMLFVRGDSVVLISP 92
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 57/83 (68%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDLIRLSLDE+V VK R R L+G L+AYD H+NMVLG+VEET E +T
Sbjct: 6 EPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEK 65
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
K KR I MLF+RGD +ILV P
Sbjct: 66 KLKKRRIEMLFLRGDLIILVKPA 88
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 65/86 (75%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T S+++PLD+IRL+LDE ++++ + R + G+LHAYD+H NM+L D +ET+TT EI+ T
Sbjct: 4 TGSLQQPLDMIRLNLDEVIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTT 63
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVS 93
EEI K+ +R +F+RGD +IL+S
Sbjct: 64 NEEIKKSVQRDSGTVFIRGDSLILLS 89
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
EP L+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET I +E E
Sbjct: 9 ANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHY---IQDEDDES 65
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
KT R + MLFVRGD V+++SP ++ A
Sbjct: 66 ELKTVSRKLEMLFVRGDSVVMISPSDQVAA 95
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+
Sbjct: 1 MADVGEETSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYA 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
V+ DEE +E+ KT R MLFVRGD V+L+SP
Sbjct: 61 VDDDEEESDEV-KTISRKSEMLFVRGDSVVLISP 93
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
EPLDL+RL +DE V VK+R +R L+G+LHAYD H N+VLGDVEET+ E +EE E
Sbjct: 9 EPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRV 68
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
+T K+ MLFVRGD V+L++P
Sbjct: 69 RTVKKQSEMLFVRGDSVVLIAPA 91
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D V EPLDL++L LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+
Sbjct: 1 MADAAEENTHVSEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
V+ D++ E KT R MLFVRGD V+L+SP +
Sbjct: 61 VDEDDDEEEA--KTISRKSEMLFVRGDSVVLISPHGSS 96
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RLSL+E V VK+R +R L G+LHAYD H N+VLGDV ETV + DE+ E+
Sbjct: 12 VSEPLDLVRLSLNETVFVKLRGDRELAGRLHAYDSHCNLVLGDVTETVYVWD-DED--ED 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ K+ MLFVRGD V+L+SP
Sbjct: 69 NVRAVKKQSEMLFVRGDSVVLISP 92
>gi|213407672|ref|XP_002174607.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
gi|212002654|gb|EEB08314.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
Length = 90
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE-IDEE 66
T +V EPLDL+RL LDERVHVK+R +R L G+LH NMVLGD EE +T+VE +
Sbjct: 4 TQAVAEPLDLVRLCLDERVHVKLRGDRELFGRLH------NMVLGDAEEVITSVEDLVTG 57
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPN 96
T + I KT ++ MLFVRGD VIL+SPP
Sbjct: 58 TVDGIPKTIRKHSEMLFVRGDSVILISPPK 87
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T + EPLDL+RL LDE V+VK+R +R L+G+LHAYD H N+VLGDV ET+
Sbjct: 1 MADIDDGTSAPAEPLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYV 60
Query: 61 V-EIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
V E +++ EEI KT + MLFVRGD VIL+SP
Sbjct: 61 VEESEDDDGEEIVKTVVKKSEMLFVRGDSVILISP 95
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+ TV+ E+ ++
Sbjct: 11 VSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVD--EDDEDD 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
KT R MLFVRGD V+L+SP
Sbjct: 69 EVKTISRKSEMLFVRGDSVVLISP 92
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
EQ+ ++ EPLDL++LSL ERV +K+R +R L G LHAYD H+N+VL VEE + V++
Sbjct: 2 EQVAAGTISEPLDLVKLSLGERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEENIHIVDV 61
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVIL 91
E+ + +R MLF+RGD VIL
Sbjct: 62 GEDGTAAPPRIERRGFEMLFIRGDSVIL 89
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+ TV+ E+ ++
Sbjct: 11 VSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVD--EDDDDD 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
KT R MLFVRGD V+L+SP
Sbjct: 69 ELKTISRKSEMLFVRGDSVVLISP 92
>gi|405118137|gb|AFR92912.1| hypothetical protein CNAG_00781 [Cryptococcus neoformans var.
grubii H99]
Length = 95
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 62/84 (73%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
++EPLDL++L+L ERV +K+R +R++ G LHAYD H+N+V+ EE++ V++ EE
Sbjct: 9 IQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHIVDVTEEGQPL 68
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ +RS MLFVRGDGVIL+SP
Sbjct: 69 PPRVERRSAEMLFVRGDGVILLSP 92
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV EPL++I+L LDE+V+VK+R R + GKLHAYD H N+VLGD ET++TV+ + E
Sbjct: 1 MSVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE-- 58
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
KT + PM+++RGD VILV+ ++
Sbjct: 59 ---LKTQTKDRPMVYLRGDSVILVANASQ 84
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%), Gaps = 5/86 (5%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+SV EPL++I+L LDE+V+VK+R R + GKLHAYD H N+VLGD ET++TV+ + E
Sbjct: 115 AMSVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE- 173
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVS 93
KT + PM+++RGD VILV+
Sbjct: 174 ----LKTQTKDRPMVYLRGDSVILVA 195
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV-T 59
M DE EPLDL++L LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+
Sbjct: 1 MADEADDMAPAPEPLDLVKLLLDEPVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYI 60
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
T E DE+ E+ +T R MLFVRGD V+L+SP
Sbjct: 61 TDEDDEDESEQEVRTVSRKSEMLFVRGDSVVLISP 95
>gi|321250515|ref|XP_003191834.1| sm-like protein [Cryptococcus gattii WM276]
gi|317458301|gb|ADV20047.1| Sm-like protein, putative [Cryptococcus gattii WM276]
Length = 95
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 64/88 (72%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EPLDL++L+L ERV +K+R +R++ G LHAYD H+N+V+ EE++ +++ EE
Sbjct: 8 QIQEPLDLVKLALGERVLIKLRGDRIVTGILHAYDAHMNVVVSQAEESIHIIDVTEEGQP 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+T +R+ MLFVRGDGVIL+SP +
Sbjct: 68 LPPRTERRNAEMLFVRGDGVILLSPAEQ 95
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V ++ +
Sbjct: 10 AVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV---DDEDD 66
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
E KT + MLFVRGD V+L+SP
Sbjct: 67 EDVKTVSKKSEMLFVRGDSVVLISP 91
>gi|58259393|ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134107471|ref|XP_777620.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260314|gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223246|gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 95
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 63/88 (71%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EPLDL++L+L ERV +K+R +R++ G LHAYD H+N+V+ EE++ V++ EE
Sbjct: 8 QIQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQP 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNR 97
+ +R+ MLFVRGDGVIL+SP +
Sbjct: 68 LPPRIERRTAEMLFVRGDGVILLSPAEQ 95
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V+EPLDL++L LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADVGDETSHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
V+ E+ +E KT R MLFVRGD V+L+SP +
Sbjct: 61 VD--EDEEDEEVKTISRKSEMLFVRGDSVVLISPQGSS 96
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
EP L+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET + +E E
Sbjct: 10 NEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHY---MQDEEDEAD 66
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
KT R + MLFVRGD V+L+SP +
Sbjct: 67 LKTVSRKLEMLFVRGDSVVLISPSESVSS 95
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V+EPLDL++L LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADVGEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
V+ E+ +E KT R MLFVRGD V+L+SP
Sbjct: 61 VD--EDEEDEEVKTISRKSEMLFVRGDSVVLISP 92
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE-IYK 73
DLIRLSL ERV +K+R +R + G LHAYD H+NMVL DV E++T VE+ E +E +
Sbjct: 1 FDLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIR 60
Query: 74 TTKRSIPMLFVRGDGVILV 92
KR+ MLFVRGDGV+LV
Sbjct: 61 IVKRNCEMLFVRGDGVVLV 79
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
++ +EPLD+IRL+LDE +++K +N R L G+LHA+D H NMVL +V ET+TTV+ + T
Sbjct: 5 VAHQEPLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTN 64
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
++ K T+R +FVRGD +IL+S
Sbjct: 65 QQPNKVTRRDSRTVFVRGDSLILLS 89
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E + T EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 3 EADAGATAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIV 62
Query: 62 EIDEETYEEIYKTTKRSIPMLFV 84
E DE E I KT K+ MLF+
Sbjct: 63 EEDESERETI-KTIKKQEEMLFL 84
>gi|444708206|gb|ELW49298.1| Ectonucleoside triphosphate diphosphohydrolase 1 [Tupaia chinensis]
Length = 1349
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 56/83 (67%), Gaps = 19/83 (22%)
Query: 21 SLDERVHVKMR-----NE-RVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
S D R HV +R NE + RG+ DVEETVTT+EIDEETYEEIYK+
Sbjct: 1053 SEDGRAHVTLRFILPVNEGKKWRGR-------------DVEETVTTIEIDEETYEEIYKS 1099
Query: 75 TKRSIPMLFVRGDGVILVSPPNR 97
KR+IPMLFVRGDGV+LV+PP R
Sbjct: 1100 MKRNIPMLFVRGDGVVLVTPPLR 1122
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+
Sbjct: 1 MADTGDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYA 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRG 86
V+ DEE T R MLFVRG
Sbjct: 61 VDEDEE-------TINRKSEMLFVRG 79
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+I + EP +L++LSLDER+ VK R +R LRG+L AYD HLNMVL +VEE + + E
Sbjct: 4 SIQIDEPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIEP-PVKEGV 62
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPP 95
+ +R + +FVRGDG+ILV+PP
Sbjct: 63 KHR--RPIRRDLDTIFVRGDGIILVNPP 88
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLG E V ++E E
Sbjct: 11 SFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG-EVEETVYVVEEDENEE 69
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
EI KT KR MLFVRGD V+L+SP
Sbjct: 70 EIIKTIKRQEDMLFVRGDSVVLISP 94
>gi|443687705|gb|ELT90598.1| hypothetical protein CAPTEDRAFT_145207, partial [Capitella
teleta]
Length = 70
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 57/92 (61%), Gaps = 27/92 (29%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P +V+EPLDL+RLSLDER++VKMRN+R LRG+LH + LN
Sbjct: 4 PVTTVEEPLDLVRLSLDERIYVKMRNDRELRGRLHVSNS-LN------------------ 44
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
TKR IPMLFVRGDGVILVSPP RT
Sbjct: 45 --------TKRIIPMLFVRGDGVILVSPPTRT 68
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 52/81 (64%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDLIR LDE V VK+R R L+GKL YD H NMVL D EET+ T D+++ +
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEE 73
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ M+FVRGD VIL+SP
Sbjct: 74 PIVKKTAMVFVRGDSVILISP 94
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLGDVEET+
Sbjct: 1 MADTGDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYA 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRG 86
V+ DEE T R MLFVR
Sbjct: 61 VDEDEE-------TINRKSEMLFVRA 79
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 5 DDGAAPSFS--EPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMV 62
Query: 62 EIDEETYEEIYKTTKRSIPML 82
E DE E I ++R + +
Sbjct: 63 EEDENEQEIIKVESRRRVQAM 83
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 6 DDGAAPSFS--EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIV 63
Query: 62 EIDEETYEEI 71
E DE E I
Sbjct: 64 EEDEAGEETI 73
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 6 DDGAAPSFS--EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIV 63
Query: 62 EIDEETYEEI 71
E DE E I
Sbjct: 64 EEDEAGEETI 73
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 14/85 (16%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP+DLI+LSLD+ + +K+R R L+GKL A+DQHLN++L DV ET
Sbjct: 26 QIEEPIDLIKLSLDDNIFIKLRGGRKLKGKLRAFDQHLNIILTDVNET------------ 73
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
Y+ R+ P+L+VRGD V+L+SP
Sbjct: 74 --YQEKTRTFPVLYVRGDLVVLISP 96
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
++PLDLIR LDE V VK+R R L+GKL YD H NMVL D +E + +++ + + + I
Sbjct: 12 QQPLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSKIKDPI 71
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
K T M+FVRGD VIL+SP
Sbjct: 72 VKKTD----MVFVRGDSVILISP 90
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 6/89 (6%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV--TTVEIDEETY 68
++ PLD IRL+++E V +K + +R +RGKL AYD HLNM+L + ET T +E DEE+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESV 66
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
++I +R++ M+FVRGD +ILVS +
Sbjct: 67 KKI----ERNLDMVFVRGDSIILVSSATK 91
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 6/89 (6%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV--TTVEIDEETY 68
++ PLD IRL+++E V +K + +R +RGKL AYD HLNM+L + ET + VE DEE+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESV 66
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
++I +R++ M+FVRGD +ILVS +
Sbjct: 67 KKI----ERNLDMVFVRGDSIILVSSATK 91
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDLIR LDE V VK+R R L+GKL YD H NMVL D +ET+ T ++ + +
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKE 73
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ M+FVRGD VIL+SP
Sbjct: 74 PIVKKTAMVFVRGDSVILISP 94
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 14/84 (16%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V+EP+DL++LSLDE V VK+R R L+GKL A+DQHLN+VL +V ET
Sbjct: 6 VEEPIDLVKLSLDEVVLVKLRGNRQLKGKLRAFDQHLNLVLTEVTET------------- 52
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
Y + R P+L++RGD V++VSP
Sbjct: 53 -YNSVSRDFPVLYIRGDLVVIVSP 75
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 14/85 (16%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP+DLI+LSLD+ V +K+R R L+GKL A+DQHLN++L +V
Sbjct: 5 QIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNV--------------S 50
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
EIY+ R+ P+L++RGD VIL+SP
Sbjct: 51 EIYQEKTRTFPVLYIRGDLVILISP 75
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 6/89 (6%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV--TTVEIDEETY 68
++ PLD IRL+++E V +K + +R +RGKL AYD HLNM+L + ET + E DEE+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQSVTENDEESI 66
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
++I +R++ M+FVRGD +ILVS +
Sbjct: 67 KKI----ERNLDMVFVRGDSIILVSSATK 91
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDLIR LDE V VK+R R +GKL YD H N+VL D ET+ + D++ E I
Sbjct: 12 QEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS---DKDGVEPI 68
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
K T+ M+FVRGD VIL+SP
Sbjct: 69 IKRTE----MVFVRGDSVILISP 87
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+ V+ DEE +E
Sbjct: 1 VAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEEDSDE 60
Query: 71 IYKTTKRSIPMLFVRG 86
+ KT R MLFVRG
Sbjct: 61 V-KTISRKSEMLFVRG 75
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+ TV+ E+ ++
Sbjct: 11 VSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVD--EDDDDD 68
Query: 71 IYKTTKRSIPMLFVRGDGVI 90
KT R MLFVR I
Sbjct: 69 ELKTISRKSEMLFVRAGAFI 88
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 6/87 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S++ PLDL++L+LDERV+VK+R R L G L A+D H N+VL D ET+ +E E
Sbjct: 1 MSLETPLDLLKLNLDERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLESGE--- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
K+T+++ M+FVRGD V L++ P
Sbjct: 58 ---LKSTEKNSEMIFVRGDSVTLITTP 81
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D + + EPLDL+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEETV
Sbjct: 1 MADNEDGVSAPAEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETVYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
VE DE+ E + KT + MLFVRGD V+L+SP
Sbjct: 61 VEEDEDEEETV-KTIHKKSEMLFVRGDSVVLISP 93
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 14/85 (16%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++EP+DLI+LSLD+ V +K+R R L+GKL A+DQHLN++L +V
Sbjct: 5 QIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNV--------------S 50
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
E+Y+ R+ P+L++RGD VIL+SP
Sbjct: 51 EMYQEKTRTFPVLYIRGDLVILISP 75
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL+RL+LDERV+VK+R R L G L A+D H N+VL D EET+ + ID E K
Sbjct: 5 PLDLLRLNLDERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETIYQL-IDGE-----LK 58
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
+ +S M+FVRGD V LV+
Sbjct: 59 SETKSSEMVFVRGDSVTLVTAA 80
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDLIR LDE V VK+R R +GKL YD H N+VL D ET+ + D++ + I
Sbjct: 12 QEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS---DKDGVDPI 68
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
K T+ M+FVRGD VIL+SP
Sbjct: 69 IKRTE----MVFVRGDSVILISP 87
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 8/83 (9%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDLIR LDE V VK+R R ++G+L YD H NMVL + EE + + DEET +
Sbjct: 11 QEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSAG-DEET---V 66
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
K T+ M+FVRGD VIL+SP
Sbjct: 67 VKKTE----MVFVRGDSVILISP 85
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 60/94 (63%), Gaps = 6/94 (6%)
Query: 6 IPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+ T EPLDLI LSL+E V VK+R R L G LHAYD H +MVLG+VEETV E E
Sbjct: 4 VDTSGGSEPLDLIGLSLNENVFVKLRGGRELYGLLHAYDIHCSMVLGNVEETV--FEYVE 61
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVS--PPNR 97
+ + + K+ MLFVRGD VILV+ PP R
Sbjct: 62 GSPK--LEARKKKSEMLFVRGDSVILVTSNPPKR 93
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
Length = 84
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S++ PLDL++L+LDE+V+VK+R R L G L A+D H N+VL D ET+ +E +
Sbjct: 1 MSLETPLDLLKLNLDEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELEDGD--- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
K+T+R M+FVRGD V L++ P
Sbjct: 58 ---LKSTERQSEMIFVRGDTVTLITTP 81
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 8/84 (9%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDLIR LDE V VK+R R ++GKL YD H NMVL D +ET+ E +E+T +
Sbjct: 53 EEPLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYG-ENEEDT---V 108
Query: 72 YKTTKRSIPMLFVRGDGVILVSPP 95
K T+ M+FVRGD VIL+SP
Sbjct: 109 VKKTE----MVFVRGDSVILISPS 128
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
++EPLDLIR LD+ V VK+R R L GKL YD H NMVL D ET+ D
Sbjct: 11 LQEPLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETIYGDSPDT----- 65
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
K K+ M+FVRGD VIL+SP
Sbjct: 66 --KPVKKKTDMVFVRGDSVILISP 87
>gi|164657698|ref|XP_001729975.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
gi|159103869|gb|EDP42761.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
Length = 84
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ + EP DLIRLSL ERV VK+R +R +RG LHAYD H+N++LGDVEET+ +++ E+T
Sbjct: 5 STGIHEPFDLIRLSLSERVLVKLRGDREMRGILHAYDGHMNLILGDVEETIYDMQVSEDT 64
Query: 68 YEE 70
E
Sbjct: 65 GAE 67
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 5 EDAGASSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET--VTTVEIDEETY 68
++ PLD IRL+++E + +K + +R L GKL AYD HLNM+L +V ET + E DEET
Sbjct: 7 IQNPLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEET- 65
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
K +R++ M+FVRGD +ILVS
Sbjct: 66 ---VKKMERNLDMVFVRGDSIILVSSA 89
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P +EPLDLIR LDE V VK+R R ++GKL YD H NMVL D E + D
Sbjct: 6 PQQKQEEPLDLIRYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQD-- 63
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVSP 94
K +S M+F+RGD VIL+SP
Sbjct: 64 ------KPQGKSTDMVFIRGDSVILISP 85
>gi|356534805|ref|XP_003535942.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 2 [Glycine max]
Length = 65
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 53/89 (59%), Gaps = 32/89 (35%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+VKEPL+LI LSLDER++VK+R++R LRGKLH
Sbjct: 8 AVKEPLNLIWLSLDERIYVKLRSDRELRGKLH---------------------------- 39
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
TTKR++P LFVRGDGVILVSPP RT
Sbjct: 40 ----TTKRTVPFLFVRGDGVILVSPPLRT 64
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
E SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 5 EDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+FVRGD V L+S PN
Sbjct: 59 -SERRCEMVFVRGDTVTLISTPN 80
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 126
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+FVRGD V L+S PN
Sbjct: 59 -SERRCEMVFVRGDTVTLISTPN 80
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLGDVEET+ V
Sbjct: 11 SVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+FVRGD V L+S PN
Sbjct: 59 -SERRCEMVFVRGDTVTLISTPN 80
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S+ PLDL++L+LDERV+VK+R R L G L A+D H N+VL D E++ + +D E
Sbjct: 1 MSLDAPLDLLKLNLDERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYEL-VDGE-- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPN 96
K+T++S M+FVRGD V L++ +
Sbjct: 58 ---LKSTEKSSEMVFVRGDSVTLITAAS 82
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D T V+EPLDL++L LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADVGEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRG 86
V+ E+ +E KT R MLFVRG
Sbjct: 61 VD--EDEEDEDVKTISRKSEMLFVRG 84
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 6/87 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S+ PLDL++L+LDERV+VK+R R L G L A+D H N VL D ET+ + ID E
Sbjct: 1 MSLATPLDLLKLNLDERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQL-IDGE-- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
K+ ++S M+FVRGD V L++ P
Sbjct: 58 ---LKSREKSSEMIFVRGDTVALITTP 81
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 5/88 (5%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S++ PLDL++L+LDE+V+VK+R R L G L A+D H N+VL D ET+ E+D+E
Sbjct: 1 MSLETPLDLLKLNLDEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIETI--YELDDEGD 58
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPPN 96
++ +R+ M+FVRGD V L++ P+
Sbjct: 59 ---LQSVERNSEMIFVRGDTVTLITTPD 83
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P ++++EPLD+IRL+LDE +++K +N R L G+L A+D+H NMVL +V ET+TTVE+D
Sbjct: 3 PPVTLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNN 62
Query: 67 TYEEIYK 73
+ E K
Sbjct: 63 SKNETTK 69
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S+ PLDL++L+LDERV+VK+R R + G L A+D H N+VL D ET+ + +D E
Sbjct: 1 MSLSTPLDLLKLNLDERVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETIYEL-VDGE-- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSP 94
K+ +R+ M+FVRGD V L++
Sbjct: 58 ---LKSQERASEMIFVRGDSVTLITA 80
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDL+R LDE V VK+R R ++GKL YD H NM+L D E + V E E +
Sbjct: 11 QEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDV---PEGQEPV 67
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPN 96
K T M+FVRGD VIL+SP N
Sbjct: 68 TKNTD----MVFVRGDSVILISPVN 88
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V EPLDL+RL L+E V VK+R +R L+GKLHAYD H N+VLG+VEET+ TV+ D++ E
Sbjct: 11 VSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDD--E 68
Query: 71 IYKTTKRSIPMLFV 84
KT R MLF
Sbjct: 69 ELKTISRKSEMLFC 82
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+F+RGD V L+S P+
Sbjct: 59 -SERRCEMVFIRGDTVTLISTPS 80
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDE V+VK+R R L G L A+D H N+VL D ET+ E+D E+
Sbjct: 5 PLDLLKLNLDETVYVKLRGARALTGTLQAFDSHCNIVLSDAVETI--YELDGNG--ELSS 60
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
K+S M+FVRGD V L++ PN
Sbjct: 61 KEKKS-EMIFVRGDSVTLITTPN 82
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 65
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+F+RGD V L+S P+
Sbjct: 66 -SERRCEMVFIRGDTVTLISTPS 87
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV+VK+R+ R L G L A+D H N+VL D +ET+ E E K
Sbjct: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIY------ELVEGDLK 58
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
TT+R M+FVRG V LV+ P
Sbjct: 59 TTERFSEMIFVRGGLVALVTTP 80
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 10/85 (11%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
++ EPLD+++ S+ +++++KMRN L+G L +YD HLNM++ EET +++
Sbjct: 3 TLDEPLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEET---------SFQ 53
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
E K TKR + L++RGDG+IL+SP
Sbjct: 54 EGIK-TKRKLDALYLRGDGIILISP 77
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 6/87 (6%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S++ PLDL++L+LDE+V+VK+R R L G L A+D H N+VL D ET+ + +D E
Sbjct: 1 MSLETPLDLLKLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYEL-VDGE-- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
K+ +++ MLFVRGD V L++ P
Sbjct: 58 ---LKSNEKTSEMLFVRGDTVTLITTP 81
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EPLDLIR LDE V +K+R R ++GKL YD H NMVL + EE + D+
Sbjct: 5 EEPLDLIRFHLDEFVLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDD------ 58
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
+ M+FVRGD VIL+SP
Sbjct: 59 --VETKKTEMVFVRGDSVILISP 79
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+S+ PLDL++L+LDE+++VK+R R L G L A+D H N+VL D ET + +D E
Sbjct: 1 MSLDAPLDLLKLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYEL-VDGE-- 57
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
K+T+R+ MLFVRGD V L++
Sbjct: 58 ---LKSTERNSEMLFVRGDSVTLIT 79
>gi|358255644|dbj|GAA57330.1| U6 snRNA-associated Sm-like protein LSm3 [Clonorchis sinensis]
Length = 50
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 39/44 (88%)
Query: 30 MRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
MR+ R LRG LHA+D HLNM+LG+ EETVTT+EIDEET+EE+YK
Sbjct: 1 MRHNRELRGTLHAFDSHLNMILGNAEETVTTLEIDEETFEEVYK 44
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL+RL+LDE+V+VK+R R L G L A+D H N+VL D EET+ + +E
Sbjct: 5 PLDLLRLNLDEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIYELVDGNLRFE---- 60
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TK S M+FVRGD V LV+
Sbjct: 61 -TKTS-EMIFVRGDSVTLVTA 79
>gi|119174705|ref|XP_001239694.1| hypothetical protein CIMG_09315 [Coccidioides immitis RS]
Length = 108
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D P+ S EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLG E V
Sbjct: 6 DGGAPSFS--EPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG-EVEETVYVV 62
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDG 88
++E EEI KT KR MLFVR +
Sbjct: 63 EEDENEEEIIKTIKRQEDMLFVRANA 88
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D SV EP+DL+RL LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADAVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 V 61
V
Sbjct: 61 V 61
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D SV EP+DL+RL LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADAVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 V 61
V
Sbjct: 61 V 61
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L++L+LDERV+VK+R R + G L A+D H N+VL D VE E + +
Sbjct: 5 PLNLLKLNLDERVYVKLRGARSMAGTLQAFDSHCNIVLSDA------VETRYELVDGELR 58
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
+T+R M+FVRGD V LV+ P
Sbjct: 59 STERPSEMVFVRGDSVTLVTTP 80
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+EP DL+R LDE V VK+R R ++G+L YD H NMVL D E + ++ EE
Sbjct: 11 QEPFDLVRYQLDELVLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYI--YDLGEEVNSN- 67
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPN 96
T K+S M+FVRGD VIL++P N
Sbjct: 68 -PTVKKS-EMVFVRGDSVILINPIN 90
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D SV EP+DL+RL LDE V VK+R +R L+G+LHAYD H N+VLG+VEET+
Sbjct: 1 MADAVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV 60
Query: 61 V 61
V
Sbjct: 61 V 61
>gi|444729623|gb|ELW70034.1| Homeobox protein orthopedia [Tupaia chinensis]
Length = 138
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%), Gaps = 6/62 (9%)
Query: 28 VKMRNERVLR-----GKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ MR E LR ++ AY+QHLN +L DV+ETVTT+E DEETYE++YK+TKR+IP+L
Sbjct: 78 IFMREELALRIGLTESRVQAYEQHLN-ILADVKETVTTIETDEETYEDVYKSTKRNIPVL 136
Query: 83 FV 84
F+
Sbjct: 137 FI 138
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDE+V VK+R R + G L A+D H N+VL + ET+ + +D E K
Sbjct: 4 PLDLLKLNLDEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYEL-VDGE-----LK 57
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++ + M+FVRGD V L++ P+
Sbjct: 58 SSTKGSEMVFVRGDSVTLITTPS 80
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLH---------AYDQHLNMVLGDVEETVTTVE 62
K PLD IRL+++E + +K + +R L G L AYD HLNM+L + +E V
Sbjct: 12 KGPLDYIRLNMEEEIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKYKQVT 71
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
I E EE K +R++ M+FVRGD +ILVS +
Sbjct: 72 I--ENNEECVKQIERNLDMVFVRGDSIILVSSAAK 104
>gi|116792190|gb|ABK26267.1| unknown [Picea sitchensis]
Length = 45
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 37/38 (97%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHL 47
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHL
Sbjct: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 45
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
EP L+RL LDE V VK+R +R L+G+LHAYD H N+VLGDVEET + D+E+
Sbjct: 9 ANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDES 65
>gi|123498225|ref|XP_001327354.1| Sm protein [Trichomonas vaginalis G3]
gi|121910282|gb|EAY15131.1| Sm protein [Trichomonas vaginalis G3]
Length = 83
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P D IRLS+++RV V++ RVL G LHAYD+H N+++GDV E++ +D+ +
Sbjct: 7 PQDYIRLSMEKRVKVQLEG-RVLEGVLHAYDEHYNIIIGDVTESLMG--LDKNGMQ--VA 61
Query: 74 TTKRSIPMLFVRGDGVILVS 93
+R I MLFVRGD ++ ++
Sbjct: 62 VNQRQIDMLFVRGDRIVSIA 81
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P D IRLS+++RV VK++ + L G LHAYD+H N++LGDV E++ ++ + +
Sbjct: 7 PQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKN----GKFIP 62
Query: 74 TTKRSIPMLFVRGDGVILVS 93
+ I MLFVRGD ++ ++
Sbjct: 63 VRQNQIDMLFVRGDRIVSIA 82
>gi|406602048|emb|CCH46368.1| hypothetical protein BN7_5961 [Wickerhamomyces ciferrii]
Length = 77
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 20/85 (23%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
EPLDLIRL LDE+ AYD H N+VL D ET+ +E E +E+
Sbjct: 11 SEPLDLIRLLLDEQ----------------AYDSHCNIVLSDAIETIYDIE---EGSDEL 51
Query: 72 YKTTKRSIPMLFVRGDGVILVSPPN 96
TTK S +LFVRGD VIL+S P+
Sbjct: 52 KSTTKNS-EILFVRGDSVILISSPS 75
>gi|395516688|ref|XP_003762519.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 44
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLH 41
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LH
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH 44
>gi|194742710|ref|XP_001953844.1| GF17032 [Drosophila ananassae]
gi|190626881|gb|EDV42405.1| GF17032 [Drosophila ananassae]
Length = 301
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLH-AYDQHLN 48
+ VKEPLDLIRLSLDE+V+VKMRNER LRG+LH YD +N
Sbjct: 162 LPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHRRYDADVN 202
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
+ PLD++ SL+ V V++++ R RG+L YD H+N+VL E EE
Sbjct: 2 AQRPLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVL--------------ENTEE 47
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
I + T R I + VRGD V+ +SP
Sbjct: 48 IAEGTARKIGAVIVRGDNVVYISP 71
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV DEE E I
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPIED 64
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
L ++ S+ V V++RN +VLRG L YDQH+N+VL E+T E I +
Sbjct: 6 SLKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVL-------------EDTDELIDE 52
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
T+ + + VRGD ++++SPP
Sbjct: 53 NTQNKLGTIVVRGDSIVMISPP 74
>gi|448361838|ref|ZP_21550451.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
gi|445649518|gb|ELZ02455.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
Length = 78
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G+L YDQH+N+VL D + E D T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETDTATAESVED 64
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 14/75 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL++ V VK++ R +RG+L +YD HLN+VL E EEI T R +
Sbjct: 12 SLEKNVLVKLKGGREIRGQLKSYDYHLNLVL--------------ENAEEIRGTRTRQLG 57
Query: 81 MLFVRGDGVILVSPP 95
+ VRGD VILVSP
Sbjct: 58 TIIVRGDNVILVSPA 72
>gi|448348652|ref|ZP_21537500.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|448369167|ref|ZP_21555934.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
gi|445642313|gb|ELY95381.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|445651710|gb|ELZ04618.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
Length = 78
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G+L YDQH+N+VL D + E + T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETEPATAESVED 64
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 65 TT-------IIRGDNVVSITP 78
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 12 KEPLDL--IRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
K P L I +S + +V +++RN R L G++ A+D+H+NM+L +V E T + + +
Sbjct: 16 KGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEIPKGNKGKK 75
Query: 70 EIYKTTKRSIPMLFVRGDGVILV 92
+R IP +F+RGD VI +
Sbjct: 76 AHATNKERFIPKMFLRGDSVIYI 98
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NM+L +V+E T + + +
Sbjct: 24 PLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEIPKTGKGKKGS 83
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R IP LF+RGD VILV
Sbjct: 84 TPVNKDRFIPKLFIRGDSVILV 105
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++ PLD++ SL+ +V +K++ R RG L+++D H+N+VL D EE E+
Sbjct: 6 NLNTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEEL--------ES 57
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + R + ++ +RGD ++ +SP
Sbjct: 58 GE-----SSRRLGVVLIRGDNIVYISP 79
>gi|414879543|tpg|DAA56674.1| TPA: hypothetical protein ZEAMMB73_233599, partial [Zea mays]
Length = 67
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 30/31 (96%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLH 41
VKEPLDLIRLSLDER++VK+R++R LRGKLH
Sbjct: 37 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH 67
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
ED+ P+ PL ++ + + +V + R+ R L G++ A+D+H NM+L DV E T
Sbjct: 71 EDKDCPS----GPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWT 126
Query: 60 TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92
E+ ++ Y R I LF+RGD V++V
Sbjct: 127 --EVSGGGGKKKYMNKDRYISRLFLRGDSVVVV 157
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P D I + D+ V + +RN + + GK+ YD+HLN++L E V ++ E + E+
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLL----ENVNEIKFVGENFSEL 58
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K + IP +F+RGD ++L+
Sbjct: 59 IKIKSKFIPKVFLRGDNIVLI 79
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 13/73 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L + V +K++ ER +RGKL +YDQHLN+VL D E EI E+ + R +
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAE------EIKED-------GSTRKLGT 59
Query: 82 LFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 60 IVIRGDTVILISP 72
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ SL+ V VK+++ RV RG+L YD H+N+V+ EE
Sbjct: 9 QRPLDILNESLNGPVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEVAEG----------- 57
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
R+I + VRGD V+ +SP
Sbjct: 58 --AVARNIGTVIVRGDNVVYISP 78
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 13/87 (14%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ SL + V +K++ +V+RG LH +DQH+N++L D +VEI EE
Sbjct: 1 MSVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLED------SVEILEEGK 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
T + VRGD V+++SPP
Sbjct: 55 SNDLGT-------IVVRGDNVVIISPP 74
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+PL ++ SL++ V V M+ + RG L YDQHLN+VL +VEE +
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIING------------ 53
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
+K ++ VRGD VI +SPP
Sbjct: 54 -ESKGVHNVVIVRGDNVIYISPP 75
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+PL ++ SL++ V V M+ + RG L YDQHLN+VL +VEE +
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIING------------ 53
Query: 73 KTTKRSIPMLFVRGDGVILVSPP 95
+K ++ VRGD VI +SPP
Sbjct: 54 -ESKGVHNVVIVRGDNVIYISPP 75
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
PL L++ SL++R+ + ++N + G L ++D+H+N++L + EET +
Sbjct: 50 FANPLYLLKTSLEDRITILLQNNSSVTGLLASFDEHMNIILINAEETGHPL--------- 100
Query: 71 IYKTTKRSIPMLFVRGDGVILVS 93
R P+LF+RGD +I V+
Sbjct: 101 -----NRFFPLLFIRGDSIIFVT 118
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++ PLD++ +L+ +V +K++ R RG L ++D H+N+VL D EE E+
Sbjct: 6 NVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL--------ES 57
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + R + ++ +RGD ++ +SP
Sbjct: 58 GE-----SSRRLGVVLIRGDNIVYISP 79
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 13/69 (18%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVR 85
V +KM+ E +RGKL +YDQHLN+VL D EE V D + R + L +R
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEE----VRGD---------GSSRKLGTLVIR 64
Query: 86 GDGVILVSP 94
GD V+L+SP
Sbjct: 65 GDTVVLISP 73
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R IP +F+RGD VILV
Sbjct: 78 KPVNKDRFIPKMFLRGDSVILV 99
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 45 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 104
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R IP +F+RGD VILV
Sbjct: 105 KPVNKDRFIPKMFLRGDSVILV 126
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
PL L++ SL++RV V ++N + G L ++D+H+N++L + EET ++
Sbjct: 50 FSNPLYLLKTSLEDRVSVLLQNNSSITGLLASFDEHMNLILINAEETGHSL--------- 100
Query: 71 IYKTTKRSIPMLFVRGDGVILVS 93
R P+L +RGD +I V+
Sbjct: 101 -----NRFFPLLVIRGDSIIFVT 118
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L + V +K++ ER +RGKL +YDQHLN+VL D E EI E + R +
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAE------EIREN-------GSTRKLGT 59
Query: 82 LFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 60 IVIRGDTVILISP 72
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++ PLD++ +L+ +V +K++ R RG L ++D H+N+VL D EE E+
Sbjct: 26 NVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL--------ES 77
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + R + ++ +RGD ++ +SP
Sbjct: 78 GE-----SSRRLGVVLIRGDNIVYISP 99
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 2 EDEQIPTISVKE------PLDLIR--LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53
ED I + + K+ PL L+ + + ++ V RN R + G++ A+D+H N++L D
Sbjct: 3 EDSNIESQTTKKDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTD 62
Query: 54 VEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV-SPPN 96
E T + Y R I LFVRGD VIL+ PN
Sbjct: 63 AREIWTESMKSGKKGSAKYINKDRFISKLFVRGDSVILILKSPN 106
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ LS+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 11 EEEEFST----GPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 66
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ + K R I +F+RGD VI+V
Sbjct: 67 EVPKTGKGKKKAHPVNKDRFISKMFLRGDSVIIV 100
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK-TTKRSI 79
SL V VK++ E+++RG L +YD H+N+VL E EEI + R +
Sbjct: 18 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVL--------------ENSEEIMNDGSTRKV 63
Query: 80 PMLFVRGDGVILVSP 94
+ +RGD VILVSP
Sbjct: 64 GTIVIRGDNVILVSP 78
>gi|156042123|ref|XP_001587619.1| hypothetical protein SS1G_11612 [Sclerotinia sclerotiorum 1980]
gi|154695995|gb|EDN95733.1| hypothetical protein SS1G_11612 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 74
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 42 AYDQHLNMVLGDVEETVTTVEIDEETYEE-IYKTTKRSIPMLFVRGDGVILVSP 94
AYD H N+VLGDV ET+ VE EE EE I KT + MLFVRGD VIL+SP
Sbjct: 18 AYDSHCNLVLGDVVETIYVVEEGEEDDEEEIIKTVVKKSEMLFVRGDSVILISP 71
>gi|429192031|ref|YP_007177709.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|448324725|ref|ZP_21514137.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
gi|429136249|gb|AFZ73260.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|445617688|gb|ELY71281.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
Length = 75
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV D+E+ E+
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESVTDDESIED--- 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T V +P+D+++ SL++ + V ++ R G L YD ++N+VL +V ET+
Sbjct: 5 TAYVSKPMDVLKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETING------- 57
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPP 95
K + VRGD +I VSP
Sbjct: 58 ------ENKGVFEKMLVRGDNIIFVSPS 79
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
+L V VK+R + V+RGKL ++DQHLN+VL + EE ++ D T R +
Sbjct: 12 NLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEE----IKSDGST---------RKLG 58
Query: 81 MLFVRGDGVILVSP 94
L +RGD V+L+SP
Sbjct: 59 TLVIRGDNVVLISP 72
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+++ PLD + SL+ V ++++ ER RG L ++D H+N+VL D EE +E E T
Sbjct: 9 NIQRPLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEE----IENGEVT-- 62
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
R + + +RGD ++ +SP
Sbjct: 63 -------RKLGTVLIRGDNIVYISP 80
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK-TTKRSI 79
SL V VK++ E+++RG L +YD H+N+VL E EEI + R +
Sbjct: 12 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVL--------------ENSEEIMNDGSTRKV 57
Query: 80 PMLFVRGDGVILVSP 94
+ +RGD VILVSP
Sbjct: 58 GTIVIRGDNVILVSP 72
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
PL L++ SL++R+ V ++N + G L ++D+H+N++L + EET ++
Sbjct: 56 FSNPLYLLKTSLEDRISVLLQNNSSITGLLASFDEHMNLILINAEETGHSL--------- 106
Query: 71 IYKTTKRSIPMLFVRGDGVILVS 93
R P+L +RGD +I V+
Sbjct: 107 -----NRFFPLLVIRGDSIIFVT 124
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla
CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla
CCMP1545]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV 58
ED++ T PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V+E
Sbjct: 8 FEDQEFDT----GPLSVLTQSVKTNSQVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYW 63
Query: 59 TTVEIDEETYEEIYKTT----KRSIPMLFVRGDGVILV 92
V +T + + +TT +R I +F+RGD VILV
Sbjct: 64 LEV---SKTGKGVKRTTPIHKERFISKMFLRGDSVILV 98
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ LS+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 13 EEEEFST----GPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 68
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 69 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 102
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE +E E T
Sbjct: 6 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE----LEDGEVT- 60
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSP 94
R + + +RGD ++ +SP
Sbjct: 61 --------RRLGTVLIRGDNIVYISP 78
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D ++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---- 56
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
+E E T R + + +RGD ++ +SP
Sbjct: 57 LEDGEVT---------RRLGTVLIRGDNIVYISP 81
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL V VK++ ++++RG L +YD H+N+VL + EE ++ D T R +
Sbjct: 16 SLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMS----DGST---------RKVG 62
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VILVSP
Sbjct: 63 TIIIRGDNVILVSP 76
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE +E E T
Sbjct: 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE----LEDGEVT- 65
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSP 94
R + + +RGD ++ +SP
Sbjct: 66 --------RRLGTVLIRGDNIVYISP 83
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
V +P++ ++ SL++ + + ++ R+ G L YD ++N+VL + ET+
Sbjct: 10 VPKPMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATETINN---------- 59
Query: 71 IYKTTKRSIPMLFVRGDGVILVSPP 95
K + M+ +RGD +I VSPP
Sbjct: 60 ---ENKGTFSMMLLRGDNIIFVSPP 81
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D RV + + + R+L G A+D+HLN++L + EE I ++ EI TKR++ M
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEE----YRIRKQGIHEI--ETKRTLGM 64
Query: 82 LFVRGDGVILVS---PPNRTP 99
+ VRGD +I +S PP++ P
Sbjct: 65 IIVRGDNIISLSAEAPPHQPP 85
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ +V + RN R L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 15 PLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEIPKTGKGCKKA 74
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+K R + +F+RGD VILV
Sbjct: 75 RTISKDRFLSKMFIRGDSVILV 96
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D RV + + + R+L G A+D+HLN++L + EE I ++ EI TKR++ M
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEE----YRIRKQGIHEI--ETKRTLGM 64
Query: 82 LFVRGDGVILVS---PPNRTP 99
+ VRGD +I +S PP++ P
Sbjct: 65 IIVRGDNIISLSAEAPPHQPP 85
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 3 DEQIPTISVKE-----PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE 55
DE +P + +E PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V+
Sbjct: 6 DEDMPEKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 65
Query: 56 ETVTTVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
E T V + ++ K R I +F+RGD VI+V
Sbjct: 66 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKGRKGQ 86
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R IP +F+RGD VI+V
Sbjct: 87 PVNKDRFIPKMFLRGDSVIIV 107
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ + +E +V + RN R + G++ A+D+H NMVL +V E T V + +
Sbjct: 24 PLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGGSNKKPV 83
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 84 NK--DRFVSKMFLRGDSVIMV 102
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + ++ +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKSKKNN 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 PVNKDRYISKMFLRGDSVILV 108
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 14 PLDLIR--LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE----ETVTTVEIDEET 67
PL L+ + + ++ V RN R + G++ A+D+H N++L DV E V T ++
Sbjct: 22 PLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEAVKTNSSQKKK 81
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILV-SPPN 96
+ R I LFVRGD VIL+ PN
Sbjct: 82 SSNRFINKDRFISKLFVRGDSVILILKSPN 111
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
++Q + PLD + +L+ +V +K++ + RG L ++D H+N+VL D EE
Sbjct: 2 NDQKNNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI----- 56
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
+ E I + + ++ VRGD ++ +SP
Sbjct: 57 ---KDGESICR-----LGVVLVRGDNIVYISP 80
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL+ V VK++ + +RG L +YDQH+N+VL D EE ++ D + + +
Sbjct: 12 SLNNLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEE----IQSD---------GSGKKLG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|284166187|ref|YP_003404466.1| Sm ribonucleoprotein-like protein [Haloterrigena turkmenica DSM
5511]
gi|448390930|ref|ZP_21566397.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
gi|284015842|gb|ADB61793.1| Like-Sm ribonucleoprotein core [Haloterrigena turkmenica DSM
5511]
gi|445666518|gb|ELZ19179.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
Length = 74
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV T+ +DEE +
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDV--TIPEAGVDEEA--PVED 60
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 61 TT-------IIRGDNVVSITP 74
>gi|448356655|ref|ZP_21545382.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
gi|445652767|gb|ELZ05650.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
Length = 81
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL---GDVEETVTTVEIDEETYEE 70
PLD++ SL ERV V++++ G+L YDQH+N+VL D ++ E + E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGGDSDDATETESTAAEP 64
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ TT +RGD V+ ++P
Sbjct: 65 VEDTT-------IIRGDNVVSITP 81
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 84 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 143
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 144 NPVNKDRFISKMFLRGDSVIIV 165
>gi|425770497|gb|EKV08967.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum Pd1]
gi|425771863|gb|EKV10295.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum PHI26]
Length = 125
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+ET+ DEE T
Sbjct: 40 LDLSKY-MDKEVQVKFNGGREVIGTLKGYDQLMNLVLDDVKETMR----DEEG-----NT 89
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 90 TTRSMGLIVARGTLIVLISPADGS 113
>gi|45358711|ref|NP_988268.1| small nuclear ribonucleoprotein [Methanococcus maripaludis S2]
gi|340624470|ref|YP_004742923.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
gi|45047577|emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
gi|339904738|gb|AEK20180.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
Length = 72
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ + PLD + S++ V V +++ +V++G+L AYD H+N+ L + + +E DEE
Sbjct: 2 MDTQRPLDALGKSINTNVTVYLKDGKVVKGRLKAYDLHMNVALENAK-----IENDEE-- 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
+ PML VRGD V+ VS
Sbjct: 55 --------KEFPMLVVRGDNVLYVS 71
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL + V +K+R + +RGKL +YD HLN+VL D E EE+ + R +
Sbjct: 17 SLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAE-------------EELSDGSWRKLG 63
Query: 81 MLFVRGDGVILVSP 94
+ +RG+ V+++SP
Sbjct: 64 TVLIRGENVVVISP 77
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT----VEIDEETYE 69
PLD++ +L +RV V ++ G+L YDQH+N+VL + E T T+ + DEET
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEAERTATSETAPADGDEETSS 83
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+ TT +RGD V+ ++P
Sbjct: 84 Q--DTT-------IIRGDNVVSINP 99
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 17/74 (22%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-------RS 78
V + +RN + L GK+ A+D+H NM+L +V +E + EI K+ K R
Sbjct: 51 VLINVRNSKKLLGKVKAFDRHFNMILENV----------KEIWTEIPKSKKARPVNKDRF 100
Query: 79 IPMLFVRGDGVILV 92
IP +F+RGD V+LV
Sbjct: 101 IPKMFLRGDSVVLV 114
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 8 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 63
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 64 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 97
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PLD++ L+ + V V ++ R LRG L YD H+N+VL + EE
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
I RS+ L VRGD VI +SP
Sbjct: 49 IEGGQSRSVGTLIVRGDNVIYISP 72
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL+ V VK++ + +RG L +YDQH+N+VL D EE ++ D + + +
Sbjct: 17 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEE----IQSD---------GSGKKLG 63
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 64 TIVIRGDNVILISP 77
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+PLD++ SL V V++R R RG L YD H+N+VL D E E+D +
Sbjct: 9 KPLDVLNKSLRSPVIVRIRGAREFRGTLEGYDLHMNLVLSDAE------ELDGDA----- 57
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRTPA 100
K + + VRGD V+ +SP + A
Sbjct: 58 -IVKELMGEILVRGDNVVYISPTVKKDA 84
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 11 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 66
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 67 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL V VK++ + +RG L +YDQH+N+VL D EE ++ D + + I
Sbjct: 12 SLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEE----IQSD---------GSGKKIG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL+ V VK++ + +RG L +YDQH+N+VL D EE ++ D + + +
Sbjct: 15 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEE----IQSD---------GSGKKLG 61
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 62 TIVIRGDNVILISP 75
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL+ V VK++ + +RG L +YDQH+N+VL D EE ++ D + + +
Sbjct: 12 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEE----IQSD---------GSGKKLG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD VIL+SP
Sbjct: 59 TIVIRGDNVILISP 72
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 10 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 66 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|134045481|ref|YP_001096967.1| hypothetical protein MmarC5_0437 [Methanococcus maripaludis C5]
gi|150402324|ref|YP_001329618.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C7]
gi|159905904|ref|YP_001549566.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C6]
gi|132663106|gb|ABO34752.1| Small nuclear ribonucleoprotein, LSM family [Methanococcus
maripaludis C5]
gi|150033354|gb|ABR65467.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C7]
gi|159887397|gb|ABX02334.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C6]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ + PLD + S++ V V +++ +V++G+L AYD H+N+ L + + +E DEE
Sbjct: 2 MDTQRPLDALGKSINTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK-----IENDEE-- 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
+ PML VRGD V+ VS
Sbjct: 55 --------KEFPMLVVRGDNVLYVS 71
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 80
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 81 QPVNKDRFISKMFLRGDSVIIV 102
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKS 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 82 LPVNRDRFISKMFLRGDSVIIV 103
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL +V E T V + ++
Sbjct: 23 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 82
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 83 LPVNRDRFISKMFLRGDSVIIV 104
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 11 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 66
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 67 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL +V E T V + ++
Sbjct: 23 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 82
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 83 LPVNRDRFISKMFLRGDSVIIV 104
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 11 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 66
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 67 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 10 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 66 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ + E V RN R + ++ A+D+H NM+L DV E T + + ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHFNMILTDVREMWT---VKSKGNKKK 79
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+T R I LF+RGD VI+V
Sbjct: 80 METKDRFITRLFLRGDSVIVV 100
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 21 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 80
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 81 NPVNKDRFISKMFLRGDSVIIV 102
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L EE ++ +
Sbjct: 1 MSVDMAVKVLDESINKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSDGD------ 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
S+ L VRGD V+++SPP
Sbjct: 55 -------SNSLGSLVVRGDNVVMISPP 74
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 17 PLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 76
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 77 KPVNKDRFISKMFLRGDSVIIV 98
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
+L ++V +K ++ LRGKL ++DQHLN+VL D EE ++ + R +
Sbjct: 12 NLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN-------------GSTRKLG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD V+L+SP
Sbjct: 59 TVVIRGDTVVLISP 72
>gi|303317868|ref|XP_003068936.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108617|gb|EER26791.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038992|gb|EFW20927.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 144
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ VHVK R + G L YDQ +N+VL +V+ET+ E +E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMRDDEGNE--------- 108
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 109 TTRSLGLIVARGTLLVLISPADGS 132
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVR 85
V +K++++ LRGKL +YDQHLN+VL DVE EI E + R + + +R
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVE------EIGE-------GGSTRKLGTVVIR 63
Query: 86 GDGVILVSP 94
GD V+ +SP
Sbjct: 64 GDTVVFISP 72
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 73 PLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKA 132
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 133 QPVNKDRFISKMFLRGDSVIIV 154
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 KEPLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
K PL ++ S++ +V + +RN + L G++ A+D+H NMVL +V+E T V + +
Sbjct: 21 KGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKK 80
Query: 70 EIYKTTK-RSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 81 KAKPINKDRFISKMFLRGDSVILV 104
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL +V E T V + ++
Sbjct: 19 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 79 LPVNRDRFISKMFLRGDSVIIV 100
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 18 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 78 NPVNKDRFISKMFLRGDSVIIV 99
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 19 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 79 LPVNKDRFISKMFLRGDSVIIV 100
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ +L+ V V+++ R RG+L YD H+N+VL + EE ++ +EE+
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEE----LKENEES---- 54
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
R + + VRGD V+ VSP
Sbjct: 55 -----RKLGTIIVRGDTVVYVSP 72
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 10 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
+ + ++ K R I +F+RGD VI+V
Sbjct: 66 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 18 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 78 QPVNKDRFISKMFLRGDSVIIV 99
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 17 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 76
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 77 MPVNKDRFISKMFLRGDSVIIV 98
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 17 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 76
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 77 NPVNKDRFISKMFLRGDSVIIV 98
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 14/82 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P D +R LD+ V V+++ + LRG+L ++D HLN+VL D VEIDE++ + +
Sbjct: 3 PHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDD------CVEIDEDSEVRLGR 56
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
+ +RGD V L+SP
Sbjct: 57 --------VLIRGDSVTLISPA 70
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 92
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 93 KPVNKDRYISKMFLRGDSVILV 114
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T
Sbjct: 11 EEEEFST----GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 66
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
+ + ++ K R I +F+RGD VI+V
Sbjct: 67 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 100
>gi|150399222|ref|YP_001322989.1| small nuclear riboprotein-like protein [Methanococcus vannielii
SB]
gi|150011925|gb|ABR54377.1| Like-Sm ribonucleoprotein core [Methanococcus vannielii SB]
Length = 72
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ + PLD + S++ V V +++ ++++G+L AYD H+N+ L + + +E DEE
Sbjct: 2 MDTQRPLDALGKSINTNVTVYLKDGKLVKGRLKAYDLHMNVALENAK-----IESDEE-- 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
+ PML VRGD V+ VS
Sbjct: 55 --------KEFPMLVVRGDNVLYVS 71
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 14 PLDLIRLSLDERVH-----VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
PL ++ +S RV + RN R L G++ A+D+H NMVL +V+E T + +
Sbjct: 26 PLSVLTMSRCLRVACVQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEFWTEIPKRGKGA 85
Query: 69 EEIYKTTK-RSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 86 KASKPVNKDRFISKMFLRGDSVILV 110
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ +I+ S++ V V RN + GK+ A+D+H N++L DV+E T E + +
Sbjct: 29 PMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWT--ETTRNSKGAV 86
Query: 72 YKTT--KRSIPMLFVRGDGVILV 92
KT +R I LF+RGD VI+V
Sbjct: 87 IKTASKERFISKLFLRGDSVIIV 109
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 30 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 89
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 90 KPVNKDRFISKMFLRGDSVILV 111
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R L G++ A+D+HLN++L +V+E T +E+ + R I L
Sbjct: 24 NSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTDRNSQKES-KTPPSNKDRFISKL 82
Query: 83 FVRGDGVILV 92
F+RGD +ILV
Sbjct: 83 FLRGDSIILV 92
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 13 EPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
EPL ++ S+ + +V + RN + L ++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 EPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKK 87
Query: 71 IYKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 SKPVNKDRYISKMFLRGDSVILV 110
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+++ V +K++ + +RG L +DQH+N++L EE + ++ ET R++
Sbjct: 13 SINKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEE----IPVEGET---------RTLG 59
Query: 81 MLFVRGDGVILVSPPNRT 98
+ VRGD V+++SPP T
Sbjct: 60 TIVVRGDNVVIISPPPAT 77
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ S+ + +V + RN R L ++ A+D+H NMVL +V+E T + ++
Sbjct: 27 PLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKGKKKA 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 87 RPVNKDRFIAKMFIRGDSVILV 108
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma
gondii VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R + G++ A+D+H N+VL DV E T E + ++
Sbjct: 19 PLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWT--ETSKGGGKKK 76
Query: 72 YKTTK--RSIPMLFVRGDGVILV 92
+T R I LF+RGD VIL+
Sbjct: 77 VRTVNKDRFISKLFLRGDAVILI 99
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 28 PLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKA 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV-----SPP 95
K R I +F+RGD VILV +PP
Sbjct: 88 KPVAKDRFISKMFLRGDSVILVLKNPLTPP 117
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV T+ +D+E E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDV--TIPVEGVDQEAPAE--D 60
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 61 TT-------IIRGDNVVSITP 74
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI + E V + RN L GK+ A+D+H N+VL +V+E T ET +
Sbjct: 29 PMSLINQAQKENTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWT------ETVKNE 82
Query: 72 YKTTK-----RSIPMLFVRGDGVILV 92
+ TK R I LF+RGD VI++
Sbjct: 83 FNQTKSVSRERFISKLFLRGDSVIII 108
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 11 PLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKA 70
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 71 QPVNKDRFISKMFLRGDSVIIV 92
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKS 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
+L + V +K ++ LRGKL ++DQHLN+VL D EE ++ + R +
Sbjct: 12 NLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN-------------GSTRKLG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD V+L+SP
Sbjct: 59 TIVIRGDTVVLISP 72
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 KPVNKDRFISKMFLRGDSVILV 109
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ + +V + RN R L G++ A+D+H NMVL +V+E + + +
Sbjct: 38 PLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPRTSDGKKGR 97
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 98 VVNKDRFISKMFLRGDSVILV 118
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 KPVNKDRFISKMFLRGDSVILV 109
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 15/76 (19%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI-YKTTKRSI 79
S+D+ V +K++ + +RG L +DQH+N++L ++ EEI + +S+
Sbjct: 9 SIDQVVLIKLKGSKTIRGTLLGFDQHMNLLL--------------DSSEEIPAEGDSKSL 54
Query: 80 PMLFVRGDGVILVSPP 95
+ VRGD V+++SPP
Sbjct: 55 GTIVVRGDNVVMISPP 70
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 11 VKEPLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
V+ P L+ ++++ +V + RN + L ++ A+D+H NMVL +++E T ++ D +
Sbjct: 9 VEGPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGK 68
Query: 69 EEIYKTTKRSIPMLFVRGDGVILV 92
+ K +RSI +F+RGD VI++
Sbjct: 69 LK-AKLCQRSISKMFLRGDSVIVI 91
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus
humanus corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus
humanus corporis]
Length = 110
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V+E T
Sbjct: 10 EEEEFST----GPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWT 65
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
+ + ++ K R I +F+RGD VILV
Sbjct: 66 ELPRSGKGKKKAKSVNKDRFISKMFLRGDSVILV 99
>gi|119186309|ref|XP_001243761.1| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
gi|392870472|gb|EAS32278.2| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
Length = 144
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ VHVK R + G L YDQ +N+VL +V+ET+ E +E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMRDDEGNE--------- 108
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 109 TTRSLGLIVARGTLLVLISP 128
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S++ +V + +RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 19 PLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKA 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 79 KPINKDRFISKMFLRGDSVILV 100
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L EE T
Sbjct: 1 MSVDMAVKVLDESINQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPT--------- 51
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
+ +S+ + VRGD V+++SPP
Sbjct: 52 ----EGNSKSLGTIVVRGDNVVMISPP 74
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 41 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKA 100
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 101 KPVNKDRFISKMFLRGDSVILV 122
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ SL+ V VK+++ R RG+L YD H+N+VL + EE + E++
Sbjct: 3 QRPLDILNESLNGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEE----IREGEDS---- 54
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
+ + + VRGD V+ +SP
Sbjct: 55 -----KKLGTVVVRGDNVVYISP 72
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 11 VKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
V PL ++ S+ + +V + RN R L ++ A+D+H NMVL +V+E T V +
Sbjct: 14 VTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGA 73
Query: 69 EEIYKTTK-RSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 74 AKAKPVNKDRFISKMFLRGDSVILV 98
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V +E + EI
Sbjct: 28 PLSVLMTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENV----------KEMWYEI 77
Query: 72 YKTTK----------RSIPMLFVRGDGVILV 92
KT K R I +F+RGD VILV
Sbjct: 78 PKTGKGKKAKPINKDRYIAKMFLRGDSVILV 108
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 14/73 (19%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D V VK+++ ++G L YDQHLN++LGD EEI +T+ R + +
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA--------------EEIGETSIRRLGL 62
Query: 82 LFVRGDGVILVSP 94
VRGD V++++P
Sbjct: 63 TLVRGDSVVVITP 75
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLD-ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PLD++ L+ E V V ++ +R LRG L YD H+N+VL + EE
Sbjct: 3 KRPLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ + I L VRGD VI +SP
Sbjct: 49 VTDGATQKIGTLIVRGDNVIYISP 72
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ +L+ V V+++ R RG+L YD H+N+VL + EE ++ +EE+
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEE----LKENEES---- 54
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
+ + + VRGD V+ VSP
Sbjct: 55 -----KKLGTIIVRGDTVVYVSP 72
>gi|255941628|ref|XP_002561583.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586206|emb|CAP93954.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 125
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL +V+ET+ DEE T
Sbjct: 40 LDLNKY-MDKEVQVKFSGGREVTGTLKGYDQLMNLVLDEVKETMR----DEEG-----NT 89
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 90 TTRSMGLIVARGTLIVLISPADGS 113
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV + E+D ET E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVTIPLEG-EVDAETPAE--D 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 12 KEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
K PL ++ ++ + +V + RN R L ++ A+D+H NM+L DV E T E T
Sbjct: 25 KGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWT-----EGTRA 79
Query: 70 EIYKTTK------RSIPMLFVRGDGVILVSP-PNRTPA 100
KT R I LF+RGD VI++ P P++ A
Sbjct: 80 GKGKTKSKPVNKDRFISKLFLRGDSVIIILPNPSQATA 117
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 8 TISVKEPLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
T+ +K PL L+R ++ + V V +R+ R + G++ AYD+H N+++ D +E TT ++
Sbjct: 15 TMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNK 74
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ R + +F+RGD VILV+
Sbjct: 75 GRKKRQGCEFSRKLGKVFIRGDTVILVA 102
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ +L+ V V+++ R RG+L YD H+N+VL + EE
Sbjct: 3 QRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKEN----------- 51
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
R + + VRGD V+ VSP
Sbjct: 52 --EASRKLGTIIVRGDTVVYVSP 72
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT----VEIDEETYE 69
PLD++ +L +RV V ++ G+L YDQH+N+VL + E T T+ DEET
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATSETTPANGDEET-- 81
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
S +RGD V+ ++P
Sbjct: 82 -------SSQDTTIIRGDNVVSINP 99
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGK 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+ I +F+RGD VILV
Sbjct: 88 AVNKDKFISKMFLRGDSVILV 108
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
++ PLD++ SL+ +V ++++ R RG L ++D H+N+VL + EE
Sbjct: 6 NLNTSRPLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL---------- 55
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
+ +T KR + ++ +RGD ++ +SP
Sbjct: 56 --DGLETAKR-LGIVLIRGDNIVYISP 79
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ V VKM+ R ++G L +YDQHLN++L E EE+ R + +
Sbjct: 19 LNSSVLVKMKGNREVKGILTSYDQHLNLIL--------------EKAEELEGKVSRPLGL 64
Query: 82 LFVRGDGVILVSPP 95
+ +RGD VI VSP
Sbjct: 65 VLLRGDNVIAVSPA 78
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 2 EDEQIPTISVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+E+ T PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V+E T
Sbjct: 5 EEEEFST----GPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 60
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
V + ++ K R I +F+RGD VI+V
Sbjct: 61 EVPKAGKGKKKAKPVNKDRFISKMFLRGDSVIIV 94
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSI 79
S+ V VK++ +RG+L +YDQHLN+VL D EEIY+ + R +
Sbjct: 12 SIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDA--------------EEIYEDGRTRKL 57
Query: 80 PMLFVRGDGVILVSPPN 96
+ +RGD V+L+SP
Sbjct: 58 GTIVIRGDTVLLISPAQ 74
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 13/85 (15%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+ PLD + S++ V +K++ +R RG L ++D H+N+VL D EE ++ E T
Sbjct: 5 NVQRPLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEE----LQDGEVT-- 58
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
R + ++ +RGD ++ +SP
Sbjct: 59 -------RRLGVVLIRGDNIVYISP 76
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 15/91 (16%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L ++
Sbjct: 1 MSVDMAVKVLDESINQIVLIKLKGGKTIRGNLLGFDQHMNLLL--------------DSS 46
Query: 69 EEI-YKTTKRSIPMLFVRGDGVILVSPPNRT 98
EEI + +S+ + VRGD V+++SPP T
Sbjct: 47 EEIPVEGNSKSLGTIVVRGDNVVMISPPPAT 77
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 17 LIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK 76
++ S+ + V VK++ + +RGKL +YD HLN+VL D EE +
Sbjct: 8 ILSSSMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQ-------------A 54
Query: 77 RSIPMLFVRGDGVILVSPPN 96
R + + +RGD VI++SP +
Sbjct: 55 RKLGTVIIRGDNVIIISPAS 74
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS)
[Ostreococcus tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L ++ A+D+H NMVL +V+E T V + +
Sbjct: 17 PLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKA 76
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VILV
Sbjct: 77 KPVNKDRFVSKMFLRGDSVILV 98
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 8 TISVKEPLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
T+ +K PL L+R ++ + V V +R+ R + G++ AYD+H N+++ D +E TT ++
Sbjct: 15 TMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNK 74
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ R + +F+RGD VILV+
Sbjct: 75 GRKKRQGCEFSRKLGKVFIRGDTVILVA 102
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ ++ + +V V RN R L G++ A+D+H+NMVL +V E T + +
Sbjct: 18 PLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPKPHKGKKAH 77
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R I +F+RGD VI+V
Sbjct: 78 PVNRERYISKMFLRGDSVIIV 98
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL+ + + V V+++N + GKL A+D H+N+ L + EE + D +T
Sbjct: 9 PLDLLNSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEE-----KKDADTL----- 58
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + +F+RGD +IL+SP
Sbjct: 59 ---RKLGNVFIRGDTIILISP 76
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+++H NMVL +V+ET T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|435848032|ref|YP_007310282.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
gi|433674300|gb|AGB38492.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
Length = 75
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV E+D+E + +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAADR-EVDDE--DPVED 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PL+++ +L+++ V V ++ R +RG L YD H+N+VL + EE + V
Sbjct: 3 KRPLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEINGV--------- 53
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
TTK L VRGD VI +SP
Sbjct: 54 ---TTKAG--TLIVRGDNVIYISP 72
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D ++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---- 56
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
+E E T R + + +RGD ++ +S A
Sbjct: 57 LEDGEVT---------RRLGTVLIRGDNIVYISRGKLAAA 87
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + +
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKGK 77
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+ I +F+RGD VILV
Sbjct: 78 AVNKDKFISKMFLRGDSVILV 98
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R L G++ A+D+H N++L +V E VE+ ++ ++ R I +L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVRE--IWVEVIKDKKKKKKINKDRYISIL 86
Query: 83 FVRGDGVILV 92
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D ++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---- 56
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+E E T R + + +RGD ++ +S
Sbjct: 57 LEDGEVT---------RRLGTVLIRGDNIVYIS 80
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 9 ISVKEPLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
+ +K PL L+ ++ + V V +RN R + GK+ AYD+H N+++GD +E ++
Sbjct: 16 MEMKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGNMRGRNKG 75
Query: 67 TYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ R + +F+RGD VILV+
Sbjct: 76 KKKRQGCDFSRRLGNVFIRGDTVILVA 102
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V E T V + ++
Sbjct: 1042 PLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVREMWTEVPKTGKGKKKA 1101
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 1102 KPVNKDRFISKMFLRGDSVIIV 1123
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 13 PLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 72
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RG+ VI+V
Sbjct: 73 KPVNKDRFISKMFLRGESVIIV 94
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ + E V RN R + ++ A+D+H NM+L DV E T + T ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTDVREMWTVR--GKGTGKKK 80
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+T R I LF+RGD VI+V
Sbjct: 81 LETKDRFITRLFLRGDSVIVV 101
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ + +V + RN R L ++ A+D+H NMVL +V+E T + + +
Sbjct: 38 PLSLLQTAVRQHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPRLADGKKGR 97
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 98 AVNKDRFISKMFLRGDSVILV 118
>gi|409721748|ref|ZP_11269904.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|448721880|ref|ZP_21704423.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|445790952|gb|EMA41602.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
Length = 74
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L +RV V++++ G+L YDQH+N+VL EE ++ E +
Sbjct: 5 PLDVLEATLGDRVTVRLKDGAAYAGELGGYDQHMNVVLDPAEED----PANDAATETVES 60
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 61 TT-------IIRGDNVVSITP 74
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 15/88 (17%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L ++
Sbjct: 1 MSVDMAVKVLDESINQVVLIKLKGNKTIRGNLLGFDQHMNLLL--------------DSS 46
Query: 69 EEI-YKTTKRSIPMLFVRGDGVILVSPP 95
EEI + +S+ + VRGD V+++SPP
Sbjct: 47 EEIPAEGDSKSLGSIVVRGDNVVMISPP 74
>gi|361127402|gb|EHK99371.1| putative GTP-binding protein 2 [Glarea lozoyensis 74030]
Length = 423
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMV 50
V EPLDL+RL LDE V VK+R +R L+G+LHA + + V
Sbjct: 12 VSEPLDLVRLCLDEVVFVKLRGDRELKGRLHALSEFADYV 51
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 17 LIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK 76
L+ S+ V VK++ + +RG L +YDQH+N+VL D EE ++ D E
Sbjct: 8 LLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEE----IQSDGEG--------- 54
Query: 77 RSIPMLFVRGDGVILVSP 94
+ + + +RGD VIL+SP
Sbjct: 55 KKMGTIVIRGDNVILISP 72
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L+ V V+++ R RG L YD H+N+VL + EE + EI
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEE-IKEGEI---------- 53
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R I + VRGD V+ VSP
Sbjct: 54 --IRKIGSVVVRGDNVVYVSP 72
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D ++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---- 56
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+E E T R + + +RGD ++ +S
Sbjct: 57 LEDGEVT---------RRLGTVLIRGDNIVYIS 80
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ V+VK++ ++G L ++DQHLN+VL E EE+ + RS+
Sbjct: 18 LNASVYVKLKGGEGVKGVLKSFDQHLNLVL--------------ENAEELTERGSRSLGT 63
Query: 82 LFVRGDGVILVSP 94
+ VRGD ++ +SP
Sbjct: 64 VLVRGDSIVAISP 76
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKGKKKV 86
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|384492952|gb|EIE83443.1| hypothetical protein RO3G_08148 [Rhizopus delemar RA 99-880]
Length = 174
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V M + RVL G++ A+D+H+N+VL D EE V+ ++ + KR++ +
Sbjct: 13 VNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEE-FRKVKSKAKSNNTTEQEMKRTLGL 71
Query: 82 LFVRGDGVILVS 93
+ +RG+ +I +S
Sbjct: 72 IILRGETIISIS 83
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E V + ++
Sbjct: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVLENVREMWAEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 82 QPVNKDRFISKMFLRGDSVIIV 103
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKV 86
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V M + RVL G++ A+D+H+N+VL D EE V+ ++ + KR++ +
Sbjct: 13 VNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEE-FRKVKSKAKSNNPTEQEMKRTLGL 71
Query: 82 LFVRGDGVILVS 93
+ +RG+ +I +S
Sbjct: 72 VILRGETIISIS 83
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ MRN++ + G L +D+ +NMVL DV E T + + T E
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKLEQIL 66
Query: 74 TTKRSIPMLFVRGDG 88
+I ML GDG
Sbjct: 67 LNGNNITMLVPGGDG 81
>gi|121701131|ref|XP_001268830.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
gi|119396973|gb|EAW07404.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
Length = 140
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+E++ E +E
Sbjct: 55 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNE--------- 104
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 105 TTRSLGLIVARGTLIVLISPADGS 128
>gi|115492179|ref|XP_001210717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197577|gb|EAU39277.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 132
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+ET+ E +E
Sbjct: 47 LDLTKY-MDKEVRVKFNGGREVLGLLKGYDQLMNLVLDDVKETMRDDEGNE--------- 96
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 97 TTRSLGLIVARGTLIVLISPADGS 120
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + +RN R + K+ A+D+H+NMVL +V E T V + +R I L
Sbjct: 28 NTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRGSHGKKSKPMKKERYITKL 87
Query: 83 FVRGDGVILV 92
F+RGD VI V
Sbjct: 88 FLRGDSVIFV 97
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + + +
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>gi|448727785|ref|ZP_21710134.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
gi|445789771|gb|EMA40450.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
Length = 78
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 15/85 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL----GDVEETVTTVEIDEETYE 69
PLD++ +L + V V++++ G+L YDQHLN+VL GD E + ++E E
Sbjct: 5 PLDVLEANLGDGVAVRLKDGATYTGELGGYDQHLNVVLEPAGGDSEPSAG----EDEATE 60
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+ TT +RGD V+ ++P
Sbjct: 61 TVESTT-------IIRGDNVVSITP 78
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + + +
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PL+++ +L+++ V V ++ R +RG L YD H+N+VL + EE + V ++ T
Sbjct: 3 KRPLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGVIKNQGT--- 59
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
L VRGD VI +SP
Sbjct: 60 -----------LIVRGDNVIYISP 72
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 3 DEQIPTISVKE-PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT 59
E+ PT +K P ++ ++ + +V V +RN L G++ AYD+H+N++L DV+E T
Sbjct: 2 SEEAPTNDLKSGPFSVLFKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWT 61
Query: 60 TVEIDEETYEEIYKTTK-RSIPMLFVRGDGVILV 92
+ + K R + +F+RGD VILV
Sbjct: 62 EYSKGGKGRKRGTSINKDRYVSKMFLRGDSVILV 95
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL V+E T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKA 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 87 KPVNKDRYISKMFLRGDSVILV 108
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ ++ + ++ V RN R L + A+D+H+NMVL +V E T + ++ +
Sbjct: 28 PLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENVCEMWTEMPKKQKGKKTK 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R I LF+RGD VILV
Sbjct: 88 PVNKERFIHKLFLRGDSVILV 108
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + + +
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + + +
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+ PLD + +++ V +K++ ER RG L ++D H+N+VL D EE E E
Sbjct: 6 NVQRPLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEEL--------EKGE 57
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+ R + + +RGD ++ +SP
Sbjct: 58 VL-----RRLGTVLIRGDNIVYISP 77
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 17 LIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK 76
L+ S+ V VK++ + +RG L +YDQH+N+VL D +VEI E
Sbjct: 8 LLAESVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSD------SVEIQNNNDE------- 54
Query: 77 RSIPMLFVRGDGVILVSP 94
+ + + +RGD VIL+SP
Sbjct: 55 KKMGTIVIRGDNVILISP 72
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PLD++ +L+ V V++R R RG+L YD H+N+VL + EE + EI
Sbjct: 3 NRPLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEE-LNDGEI-------- 53
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 54 ----VRKLGSVVIRGDNVVYVSP 72
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKGKKKV 86
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKGKKRS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 KPVNKDRYITKMFLRGDSVILV 109
>gi|258563080|ref|XP_002582285.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907792|gb|EEP82193.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 139
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ VHVK R + G L YDQ +N+VL DV+E + E ++ T
Sbjct: 53 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDDVKEIMRDDEGNDST------- 104
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ RG ++L+SP
Sbjct: 105 --RSLGLIVARGTLLVLISP 122
>gi|448306523|ref|ZP_21496427.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
gi|445597821|gb|ELY51893.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV V E++ E+ E
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVGD-EVESESPAE--D 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V + R+L G AYD+H+NMVL D EE TV+ + T E+ T KR++
Sbjct: 13 MNYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEE-FRTVKAKKGTDEQ---TQKRALGF 68
Query: 82 LFVRGDGVILVS 93
+ +RG+ V+ ++
Sbjct: 69 ILLRGENVVSMA 80
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L ++ A+D+H NMVL +V+E T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 89 KPVNKDRYISKMFLRGDSVILV 110
>gi|294655044|ref|XP_002770075.1| DEHA2B03674p [Debaryomyces hansenii CBS767]
gi|199429645|emb|CAR65445.1| DEHA2B03674p [Debaryomyces hansenii CBS767]
Length = 163
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 19/92 (20%)
Query: 19 RLSLDERVHVKMR----NERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
+ + + VH ++R + R G+L AYD+HLN+VL + EE+ I +++Y+E+ KT
Sbjct: 29 KTKMSDLVHYRLRITTIDNRNFIGQLLAYDKHLNLVLSETEES----RITKKSYQELKKT 84
Query: 75 T--------KRSIPMLFVRGDGVILV---SPP 95
KRS+ ++ +RG+ ++ + SPP
Sbjct: 85 QNSNSIVEEKRSLGLIILRGEQIVSLSIESPP 116
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE--I 71
PLD++ SL ERV V++++ G+L YDQH+N+VL DV T+ ++ EE +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDV-----TIPVEGGVEEETPV 59
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 60 EDTT-------IIRGDNVVSITP 75
>gi|119495066|ref|XP_001264327.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
gi|119412489|gb|EAW22430.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
Length = 138
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+E++ E +E
Sbjct: 53 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNE--------- 102
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 103 TTRSLGLIVARGTLIVLISPADGS 126
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV T+ I +E E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPIGDEVESE--- 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ +RGD V+ ++P
Sbjct: 57 --SPAEDTTIIRGDNVVSITP 75
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L ++ A+D+H NMVL +V+E T V + ++ K R I
Sbjct: 40 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISK 99
Query: 82 LFVRGDGVILV 92
LF+RGD VILV
Sbjct: 100 LFLRGDSVILV 110
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R L G++ A+D+H N++L +V E VE+ ++ ++ R I +L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVRE--IWVEVVKDKKKKKKINKDRYISIL 86
Query: 83 FVRGDGVILV 92
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus
anophagefferens]
Length = 104
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ S+ + +V + +RN L ++ A+D+H NMVL +V+E T + + ++
Sbjct: 16 PLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKS 75
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 76 KPVNKERYISKMFLRGDSVILV 97
>gi|448729283|ref|ZP_21711600.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
gi|445795230|gb|EMA45759.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
Length = 79
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL----GDVEETVTTVEIDEETYE 69
PLD++ +L + V V++++ + G L YDQH+N+VL GD E T E+ ET E
Sbjct: 6 PLDVLEATLGDSVAVRLKDGEIYTGSLAGYDQHMNVVLEPASGDAEPP-TPGEVGVETVE 64
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
+RGD V+ ++P
Sbjct: 65 S----------TTIIRGDNVVTITP 79
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L ++ A+D+H NMVL +V+E T V + ++
Sbjct: 25 PLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 84
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 85 KPINKDRYISKMFLRGDSVILV 106
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D + +E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQ----LIENGE-------- 52
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K+S + +RGD V+ +SP
Sbjct: 53 -PKKSYGKIVIRGDNVLAISP 72
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 17 LIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK 76
L+ SL V VK++ + +RG L +YDQH+N+VL D EE ++ D
Sbjct: 11 LLAESLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEE----IQSD---------GGG 57
Query: 77 RSIPMLFVRGDGVILVSP 94
+ + + +RGD VIL+SP
Sbjct: 58 KKMGTIVIRGDNVILISP 75
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI + + V + RN L GK+ A+D+H N+VL +V+E T ET +
Sbjct: 29 PMSLINQAQKQNTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWT------ETVKNE 82
Query: 72 YKTTK-----RSIPMLFVRGDGVILV 92
+ TK R I +F+RGD VI++
Sbjct: 83 FNQTKSVSRERFISKMFLRGDSVIII 108
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 15/81 (18%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P+ ++ SL+++V + +++ RVL G L YD+++NM L D EE+
Sbjct: 5 PMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEES---------------G 49
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
T+R + + +RG V+ ++P
Sbjct: 50 ETQRKLGTVVIRGSNVVRIAP 70
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 8 TISVKEPLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
++ +K PL L+R ++ + + V +RN R + GK+ AYD+H N+++ + E T ++
Sbjct: 15 SMEMKGPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREFGTARGRNK 74
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ R + +F+RGD VILV+
Sbjct: 75 GRKKRQGSEFSRKLGNVFIRGDTVILVA 102
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 15/92 (16%)
Query: 12 KEPLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET-- 67
K P L+ ++++ + +++RN R G++ A+D+H+NM+L ++ E +EI +ET
Sbjct: 56 KGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTE--MWIEISKETKG 113
Query: 68 ---------YEEIYKTTKRSIPMLFVRGDGVI 90
+ YK IP +F+RGD VI
Sbjct: 114 KSPCYKQRKIQNQYKIIFYYIPKMFLRGDSVI 145
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G+L YDQH+N+VL +V T+ E E I
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVLEEV--TIPADESISGDGEPIED 62
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 63 TT-------IIRGDNVVSITP 76
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L ++ A+D+H NMVL +V+E T V + ++ K R I
Sbjct: 40 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISK 99
Query: 82 LFVRGDGVILV 92
LF+RGD VILV
Sbjct: 100 LFLRGDSVILV 110
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L ++ A+D+H NMVL +V+E T + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKA 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 89 KPVNKDRYIAKMFLRGDSVILV 110
>gi|294910891|ref|XP_002777961.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
gi|239886025|gb|EER09756.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
Length = 167
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ RV V + +ER++ G+ A+D+H+N+VL D EE V + T E+ KR + +
Sbjct: 14 LNYRVRVTLHDERIMIGQFMAFDKHMNLVLADTEE-FRKVALITTTEREV----KRMLGL 68
Query: 82 LFVRGDGVILVS----PPN 96
L +RG+ +I ++ PPN
Sbjct: 69 LILRGENIISMTAEAPPPN 87
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N++ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDV------TEFD-------YS 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
T+ +P + + G+ V ++ P P
Sbjct: 54 GTQEKLPKILLNGNNVCMLIPGGEGP 79
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVT-TVEIDEETYEE 70
PL +++ ++ R V RN R + ++ A+D+H NMVL + +E T T + +Y
Sbjct: 34 PLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLANGSYGR 93
Query: 71 IYKTTK-RSIPMLFVRGDGVILV 92
K K R I LF+RGD VILV
Sbjct: 94 --KVNKDRFISKLFLRGDSVILV 114
>gi|328875018|gb|EGG23383.1| hypothetical protein DFA_05515 [Dictyostelium fasciculatum]
Length = 897
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ + + + R++ G+ A+D+H+N+V+ D EE + +E EE KR++ M
Sbjct: 692 INYRMKITINDGRIIVGRFLAFDKHMNIVVCDAEEFRRIKQKGKEDREE-----KRTLGM 746
Query: 82 LFVRGDGVILVSPPNRTP 99
L +RG+ VI +S + P
Sbjct: 747 LVIRGETVISLSAESPPP 764
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 50 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 109
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 110 KPVNKDRYISKMFLRGDSVIVV 131
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|448321855|ref|ZP_21511330.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
gi|445602907|gb|ELY56878.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
Length = 75
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV E+D+E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRA-GDREVDDEA--PVED 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI+ +++ + + RN L GK+ A+D+H N++L +V+E T + +
Sbjct: 29 PMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTETSKNNKGKATK 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+ +R I LF+RGD ++++
Sbjct: 89 SISRERFISKLFLRGDSIVII 109
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L ++ A+D+H NMVL +V+E T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VIL+
Sbjct: 89 KPVNKDRYISKMFLRGDSVILI 110
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLFV 84
V + RN + L G++ A+D+H NMVL +V E T V + ++ K R I +F+
Sbjct: 24 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 83
Query: 85 RGDGVILV 92
RGD VI+V
Sbjct: 84 RGDSVIIV 91
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 24 PLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKGVKKA 83
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 84 KPVNKDRFISKMFLRGDSVIIV 105
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLFV 84
V + +RN L + A+D+H NMVL +V+E T V + ++ TK R IP LF+
Sbjct: 382 VLINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKAKAITKDRFIPKLFL 441
Query: 85 RGDGVILV-SPPN 96
RGD V++V S PN
Sbjct: 442 RGDSVVVVCSNPN 454
>gi|398407359|ref|XP_003855145.1| hypothetical protein MYCGRDRAFT_55886 [Zymoseptoria tritici
IPO323]
gi|339475029|gb|EGP90121.1| hypothetical protein MYCGRDRAFT_55886 [Zymoseptoria tritici
IPO323]
Length = 83
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+ ++VK R + G L YDQ +N+VL +V+E T +E T+ RS+ +
Sbjct: 1 MDKDINVKFNGGREVTGTLKGYDQLMNLVLDNVKEM---------TRDEEGNTSSRSLGL 51
Query: 82 LFVRGDGVILVSP 94
L VRG ++L+SP
Sbjct: 52 LVVRGTLLVLISP 64
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 15/88 (17%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L ++
Sbjct: 1 MSVDMAVKVLDESINQVVLIKLKGNKTIRGNLLGFDQHMNLLL--------------DSS 46
Query: 69 EEI-YKTTKRSIPMLFVRGDGVILVSPP 95
EEI + + + + VRGD V+++SPP
Sbjct: 47 EEIPAEGDSKGLGTIVVRGDNVVMISPP 74
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 81
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L G++ A+D+H NMVL +V E T V + ++ K R I
Sbjct: 6 NTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISK 65
Query: 82 LFVRGDGVILV 92
+F+RGD VI+V
Sbjct: 66 MFLRGDSVIIV 76
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L ++ A+D+H NMVL +V+E T V + ++ K R I
Sbjct: 41 NTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRYISK 100
Query: 82 LFVRGDGVILV 92
LF+RGD VILV
Sbjct: 101 LFLRGDSVILV 111
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLFV 84
V + RN + L ++ A+D+H NMVL +V+E T V + ++ K R I LF+
Sbjct: 6 VLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFL 65
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 66 RGDSVILV 73
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 13/69 (18%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVR 85
V VK+R+ +RG L YDQH+N++L D EE ID +T + KR M+ +R
Sbjct: 21 VLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEI-----IDPKT------SIKRG--MVVIR 67
Query: 86 GDGVILVSP 94
GD V+ VSP
Sbjct: 68 GDTVLFVSP 76
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G+L YDQH+N+VL D V +EE E+
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDATIPVGGTVEEEEPVED--- 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+RGD V+ ++P
Sbjct: 62 -------TTIIRGDNVVSITP 75
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIIV 109
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K P+D++ L+ + V + ++ R ++G L YD H+N+VL + EE
Sbjct: 8 KRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVL--------------DKAEE 53
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
I + +SI L +RGD VI +SP
Sbjct: 54 IVQGQAQSIGTLIIRGDNVIYISP 77
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R L G++ A+D+H N++L +V E VEI ++ ++ R I +L
Sbjct: 29 NAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVRE--IWVEIIKDKKKKKKINKDRYISIL 86
Query: 83 FVRGDGVILV 92
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 18 IRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKR 77
+R +D+++ +++ R + G L +DQ +N+VL E+T EE+ T K
Sbjct: 9 LRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVL-------------EDTVEEVSSTEKN 55
Query: 78 SIPMLFVRGDGVILVSPPNRT 98
+ M+ +RG+ VIL+ P R
Sbjct: 56 ELGMVVIRGNSVILIEPLERA 76
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 92
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 93 KPVNKDRYISKMFLRGDSVIVV 114
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT-TVEIDEETYEEIYKTTKRSIP 80
++ R+ V +++ RVL G A+D+H+N+VLGD EE T ++ EE + KR +
Sbjct: 13 INYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEE--RVEKRHLG 70
Query: 81 MLFVRGDGVI 90
++ +RG+ V+
Sbjct: 71 LVLLRGESVV 80
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKGKKKA 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI++
Sbjct: 87 KPVNKDRFISKMFLRGDAVIMI 108
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT-TVEIDEETYEEIYKTTKRSIP 80
++ R+ V +++ RVL G A+D+H+N+VLGD EE T ++ EE + KR +
Sbjct: 13 INYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEE--RVEKRHLG 70
Query: 81 MLFVRGDGVI 90
++ +RG+ V+
Sbjct: 71 LVLLRGESVV 80
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 92
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 93 KPVNKDRYISKMFLRGDSVIVV 114
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV V DE E+
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVEGGVEDEAPAED--- 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 48 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 107
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 108 KPVNKDRYISKMFLRGDSVIVV 129
>gi|242773724|ref|XP_002478297.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
gi|218721916|gb|EED21334.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
Length = 144
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V+VK R + G L YDQ +N+VL DV+E + DE E
Sbjct: 59 LDLTKY-MDKEVNVKFNGGREVSGILKGYDQLMNLVLDDVKEKMR----DESGNE----- 108
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + T
Sbjct: 109 TTRSLGLIVARGTLLVLISPADGT 132
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
invadens IP1]
Length = 100
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P L+ ++++ +V + RN + L ++ A+D+H NMVL +V+E T ++ E +
Sbjct: 12 PFQLLTEAVEKHSQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGKPK- 70
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
KT R++ +F+RGD VI+V
Sbjct: 71 PKTCHRNVSKMFLRGDSVIIV 91
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 34 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 93
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 94 KPVNKDRYISKMFLRGDSVIIV 115
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 11/77 (14%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V + ++RV+ G+L A+D+HLN+VL D EE + D+E KR++ +
Sbjct: 13 INYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKE--------EKRALGL 64
Query: 82 LFVRGDGVILV---SPP 95
+ +RG+ VI + SPP
Sbjct: 65 VLLRGESVITMTVESPP 81
>gi|448734412|ref|ZP_21716638.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
gi|445800460|gb|EMA50815.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
Length = 79
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL---GDVEETVTTVEIDEETYEE 70
PLD++ +L E V V++++ + G L YDQH+N+VL + E T E+ ET E
Sbjct: 6 PLDVLEATLGESVAVRLKDGEIYTGSLAGYDQHMNVVLEPASNDAEPPTPGEVGVETVES 65
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+RGD V+ ++P
Sbjct: 66 ----------TTIIRGDNVVTITP 79
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 87 KPVNKDRYISKMFLRGDSVIVV 108
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 13 EPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 27 SPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKK 86
Query: 71 IYKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 87 SKPVNKDRYISKMFLRGDSVIVV 109
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN++ L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 87
Query: 72 YKTTKRS-IPMLFVRGDGVILV 92
K I +F+RGD VI+V
Sbjct: 88 KPVNKDCYISKIFLRGDSVIVV 109
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL V V+++ R RG L YD H+N+VL D EE + E +
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI--------QNGEVV-- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 55 ---RKVGSVVIRGDTVVFVSP 72
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 18 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVV 99
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI S+ + V + +RN + ++ A+D+H NMVL +V+E T D+ +E
Sbjct: 29 PMSLINDSMIAKTPVIISLRNNHKIIARVKAFDKHCNMVLENVKELWTEKNKDKVINKE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI+V
Sbjct: 88 -----RFISKLFLRGDSVIIV 103
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN++ L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 87
Query: 72 YKTTKRS-IPMLFVRGDGVILV 92
K I +F+RGD VI+V
Sbjct: 88 KPVNKDCYISKIFLRGDSVIVV 109
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 32 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 91
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 92 KPVNKDRFISKMFLRGDSVILV 113
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 59 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 118
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 119 KPVNKDRYISKMFLRGDSVIVV 140
>gi|67516971|ref|XP_658371.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
gi|40746253|gb|EAA65409.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
gi|259488955|tpe|CBF88826.1| TPA: small nuclear ribonucleoprotein (LSM7), putative
(AFU_orthologue; AFUA_1G14290) [Aspergillus nidulans
FGSC A4]
Length = 136
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+E++ E +E
Sbjct: 51 LDLTKY-MDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNE--------- 100
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T R++ ++ RG ++L+SP + +
Sbjct: 101 TTRALGLIVARGTLIVLISPADGS 124
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D RV V +++ R+L G A+D+HLN+VL + EE I +T E + TKR + +
Sbjct: 11 IDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEE---FRPIKPKTKGEPERQTKRILGL 67
Query: 82 LFVRGDGVILV---SPPNR 97
+ +RG+ ++ + +PP++
Sbjct: 68 VIIRGENIVSINAEAPPSQ 86
>gi|357166207|ref|XP_003580635.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like
[Brachypodium distachyon]
Length = 100
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
LDL + +D+ V VK+ R + G L YDQ LN+VL + VE + E + +
Sbjct: 8 ALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA------VESEREQDDPLKL 60
Query: 74 TTK-RSIPMLFVRGDGVILVSPPNRT 98
+TK R + ++ RG V+LVSP + T
Sbjct: 61 STKTRQLGLIVCRGTAVMLVSPTDGT 86
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVT---TVEIDEETY 68
PL L+ S+ E+ + RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 31 PLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKKS 90
Query: 69 EEIYKTTKRSIPMLFVRGDGVILV 92
+ I KT R LF+RGD VILV
Sbjct: 91 KPINKT--RFTNKLFLRGDSVILV 112
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 88
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LIR S+ +R V + +RN L ++ ++D+H NMVL +V+E T E
Sbjct: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWT------ENVNGK 86
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R + LF+RGD VI+V
Sbjct: 87 KVNRERFVAKLFLRGDSVIIV 107
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ + +V + RN R L ++ A+D+H NMVL +V+E T + + +
Sbjct: 39 PLSLLQTAVRQHTQVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPRLADGKKGR 98
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 99 PVNKDRFISKMFLRGDSVILV 119
>gi|325188073|emb|CCA22616.1| U6 snRNAassociated Smlike protein putative [Albugo laibachii Nc14]
Length = 119
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D V VK R R + G L YDQ +N+VL +E + + D ++Y KT
Sbjct: 30 LDLDKY-IDHSVCVKFRGGRQVHGTLKGYDQLVNLVL---DECIEFLREDNDSYRLSDKT 85
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RSI ++ RG V+L+SP + T
Sbjct: 86 --RSIGLVVCRGTTVMLISPVDGT 107
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFLRGDSVIVV 109
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KPVNKDRFISKMFLRGDSVILV 109
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+SV + ++ S+++ V +K++ + +RG L +DQH+N++L EE E
Sbjct: 1 MSVDMAVKVLDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGE------ 54
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVSPP 95
+ + + VRGD V+++SPP
Sbjct: 55 -------AKGLGSIVVRGDNVVMISPP 74
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan
troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Gorilla gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6
[Gorilla gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 78 KPVNKDRYISKMFLRGDSVIVV 99
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ ++V + RN + L ++ A+D+H NMVL +V+E T + +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGDGV+LV
Sbjct: 89 AINKDRFISKMFLRGDGVVLV 109
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PLD++ L L+ + V V ++ R +RG L YD H+N+VL EET E
Sbjct: 3 KRPLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEET------------E 50
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ K + L VRGD VI +SP
Sbjct: 51 NGQVVK--VGTLIVRGDNVIYISP 72
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 31 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 90
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 91 KPVNKDRFISKMFLRGDSVILV 112
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 36 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 95
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 96 KPVNKDRFISKMFLRGDSVILV 117
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFLRGDSVIVV 109
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 92
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 93 KPVNKDRFISKMFLRGDSVILV 114
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L+ V V+++ R RGKL YD H+N+VL + EE
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEELKEG------------- 51
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD ++ VSP
Sbjct: 52 DIVRKLGSVVIRGDNIVYVSP 72
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V V +RN L G++ AYD+H+N++L DV+E T + + K R +
Sbjct: 30 NTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGKGKKRGTSVNKDRYVSK 89
Query: 82 LFVRGDGVILV 92
+F+RGD VILV
Sbjct: 90 MFLRGDSVILV 100
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD +I+V
Sbjct: 88 KPVNKDRYISKMFLRGDSIIVV 109
>gi|238492871|ref|XP_002377672.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
gi|317156803|ref|XP_003190769.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus oryzae RIB40]
gi|220696166|gb|EED52508.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
Length = 133
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L +DQ +N+VL DV+E++ E +E T
Sbjct: 48 LDLSKY-MDKEVRVKFNGGREVVGTLKGFDQLMNLVLDDVKESMRDDEGNENT------- 99
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RS+ ++ RG ++L+SP + +
Sbjct: 100 --RSLGLIVARGTIIVLISPADGS 121
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+ R GKL +D ++NMVL DV E TT E + T +
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNLKQTL 66
Query: 74 TTKRSIPMLFVRGDG 88
I ML G+G
Sbjct: 67 LNGNQICMLVPGGNG 81
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P DL+ + ++V ++++N +RGK+ ++D H+N+VL + EE E+
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGEL---------- 55
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + + +RG +I VSP
Sbjct: 56 --KAKLGTILLRGGNIIFVSP 74
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ + E V RN R + ++ A+D+H NM+L +V E T + T ++
Sbjct: 23 PLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTNVREMWTVR--GKGTGKKK 80
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+T R + LF+RGD VI+V
Sbjct: 81 LETKDRFLSRLFLRGDSVIVV 101
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI ++ R V + +RN + ++ A+D+H NMVL +V+E T + ++ T +E
Sbjct: 30 PMSLINEAVISRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKHNKTTNKE- 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI++
Sbjct: 89 -----RFISKLFLRGDSVIII 104
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 46 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 105
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 106 KPVNKDRYISKMFLRGDSVIVV 127
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 12 KEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
K PL ++ S+ + +V + +RN L ++ A+D+H NMVL +V+E T V + +
Sbjct: 21 KGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 80
Query: 70 EIYKTTK-RSIPMLFVRGDGVILV 92
K R + LF+RGD V+LV
Sbjct: 81 SGKPVNKDRFVSKLFLRGDSVVLV 104
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta
CCMP2712]
Length = 99
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L+ S+ + V RN R L ++ A+D+H NMVL +V+E T + +
Sbjct: 13 PLSLLADSVRKNCQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRTGKGKAKS 72
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 73 KPVNKDRFISKMFLRGDSVIMV 94
>gi|448284412|ref|ZP_21475672.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|445570747|gb|ELY25306.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL------GDVEETVTTVEIDEET 67
PLD++ SL ERV V++++ G+L YDQH+N+VL D ++ E + +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGADGADSDDEAETESQA 64
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + TT +RGD V+ ++P
Sbjct: 65 AEPVEDTT-------IIRGDNVVSITP 84
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L+ V V+++ R RG L YD H+N+VL + EE D E
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELK-----DGEIV----- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R I + +RGD V+ VSP
Sbjct: 55 ---RKIGGVVIRGDNVVYVSP 72
>gi|224010870|ref|XP_002294392.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969887|gb|EED88226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 131
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
L+L +L +D V VK R LRG L YD+ +N+VL D EE + D E E I
Sbjct: 36 LELAKL-VDSSVRVKCLGGRELRGALRGYDELVNLVLDDCEEFMR----DPEDPETITNQ 90
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T R + ++ +RG V LVSP T
Sbjct: 91 T-RKLGLVVIRGTQVSLVSPEEGT 113
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE--IDEETYE 69
PL L++ ++ +V + RN R + ++ A+D+H NMVL +V+E T V D +
Sbjct: 39 PLSLLQTAVRNHAQVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPRLTDGKKGR 98
Query: 70 EIYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 99 PVNK--DRFISKMFLRGDSVILV 119
>gi|145230750|ref|XP_001389639.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus niger CBS
513.88]
gi|134055758|emb|CAK44131.1| unnamed protein product [Aspergillus niger]
gi|350638639|gb|EHA26995.1| hypothetical protein ASPNIDRAFT_205537 [Aspergillus niger ATCC
1015]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+E++ E +E T
Sbjct: 51 LDLNKY-MDKEVRVKFNGGREVIGTLKGYDQLMNLVLDDVKESMRDDEGNENT------- 102
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RS+ ++ RG ++L+SP + +
Sbjct: 103 --RSLGLVVARGTIIVLISPADGS 124
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL ERV V++++ G L YDQH+N+VL DV + + E + +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVSR---AADREVEDSDPVED 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|340897383|gb|EGS16973.1| putative RNA splicing factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI----DEETYEEIYKTTKR 77
++ R+ V + + R + G++ A+D+H+N+VL D EE T + + T + + + KR
Sbjct: 15 INWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKTKRMQAKPNSSTTQTLIQEEKR 74
Query: 78 SIPMLFVRGDGVILV---SPPNRTPA 100
++ + VRG +I + SPP P+
Sbjct: 75 TLGLTIVRGANIIALSVESPPPADPS 100
>gi|452986071|gb|EME85827.1| hypothetical protein MYCFIDRAFT_181789 [Pseudocercospora fijiensis
CIRAD86]
Length = 125
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ + VK R + G L YDQ +N+VL +V+ET T +E T
Sbjct: 37 LDLAKY-MDKDITVKFNGGREVTGTLKGYDQLMNLVLDNVKET---------TRDEDGNT 86
Query: 75 TKRSIPMLFVRGDGVILVSP 94
+ R++ +L RG ++L+SP
Sbjct: 87 STRNLGLLVARGTLLVLISP 106
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY--KTTKRSI 79
++ R+ V +++ R L G++ A+D+H+N+VL D EE V ++ EE+ + KR++
Sbjct: 5 INWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEE-FRRVRPKKKAGEEVAPEQELKRTL 63
Query: 80 PMLFVRGDGVILVS 93
++ +RG+ V+ +S
Sbjct: 64 GLVILRGEAVVSIS 77
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------RDGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + +RGD V+ VSP
Sbjct: 57 FSS-----VVIRGDNVVYVSP 72
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------REGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + +RGD V+ VSP
Sbjct: 57 FSS-----VVIRGDNVVYVSP 72
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ MRN++ + G L +D+ +NMVL DV E T + + T E
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKLEQIL 66
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 67 LNGNNITMLVPGGEG 81
>gi|302921652|ref|XP_003053324.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
gi|256734264|gb|EEU47611.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
Length = 133
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R ++G L YD +N+VL DV E V E +E T
Sbjct: 47 LDLAKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNEST------- 98
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ VRG ++LVSP
Sbjct: 99 --RSLGLVVVRGTLLVLVSP 116
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + RN R L ++ A+D+H NMVL +V+E T + + +
Sbjct: 29 PLSILQTAVRTHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNAQGKKGR 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 89 PVNKDRFISKMFLRGDSVILV 109
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ ++V VK+R+ +RG L A+DQH+N++L D EE ID Y+
Sbjct: 19 SIGKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEI-----IDGNVYKR---------G 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ +SP
Sbjct: 65 TIVVRGENVLFISP 78
>gi|448738899|ref|ZP_21720920.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
gi|445801285|gb|EMA51629.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
Length = 78
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL----GDVEETVTTVEIDEETYE 69
PLD++ +L + V V++++ G+L YDQHLN+VL GD E + DE
Sbjct: 5 PLDVLEANLGDGVAVRLKDGVTYTGELGGYDQHLNVVLEPAGGDSEPSA-----DEGEAS 59
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSP 94
E ++T +RGD V+ ++P
Sbjct: 60 ETVESTT------IIRGDNVVSITP 78
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 28 PLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKA 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVAKDRFITKMFLRGDSVIIV 109
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLF 83
+V + RN R L ++ A+D+H NMVL +V+E T E+T K R I +F
Sbjct: 34 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT-----EKTKGNSKGVNKDRFISKMF 88
Query: 84 VRGDGVILV 92
+RGD VILV
Sbjct: 89 LRGDSVILV 97
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
K PLD++ +L V V+++ R RG L+ YD H+N+VL E EEI
Sbjct: 3 KRPLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVL--------------ENAEEI 48
Query: 72 YKT-TKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 49 QNGEVVRKLGSVVIRGDTVVFVSP 72
>gi|401412392|ref|XP_003885643.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
gi|325120063|emb|CBZ55615.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
Length = 169
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT----TKR 77
++ RV V +++ R+L G L A+D+H+N+VL D EE ++I + + ++T KR
Sbjct: 12 INYRVRVCLQDSRMLVGSLLAFDRHMNIVLADAEE-FRKLKIRHKLADGKHQTEEKEVKR 70
Query: 78 SIPMLFVRGDGVILV---SPPNRTP 99
S+ ++ +RG+ ++ + +PP P
Sbjct: 71 SVGLMMIRGENILTLTAEAPPPAKP 95
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ V +K ++ LRGKL ++DQHLN+VL D EE + R +
Sbjct: 12 SIGRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIRGDGSV-------------RKLG 58
Query: 81 MLFVRGDGVILVSP 94
+ +RGD V+L+SP
Sbjct: 59 TVVIRGDTVVLISP 72
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 88 KPVNRDRYISKMFLRGDSVIVV 109
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI + E + + RN L GK+ A+D+H N+VL +V+E T E E
Sbjct: 29 PMSLIHQAQTENLPIVISCRNNHKLVGKVRAFDRHCNLVLENVKELWT------EKVTEF 82
Query: 72 YKTT----KRSIPMLFVRGDGVILV 92
KT +R I +F+RGD VI+V
Sbjct: 83 GKTKNVPRERFISKMFLRGDSVIIV 107
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RG+ VI+V
Sbjct: 88 KPVNKDRYISKMFLRGNSVIVV 109
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L G++ A+D+H NMVL +V+E T V + ++ K R I
Sbjct: 10 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 69
Query: 82 LFVRGDGVILV 92
+F+RGD VI+V
Sbjct: 70 MFLRGDSVIVV 80
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ V V +RN R L ++ A+D+H NMVL +V+E T + +
Sbjct: 35 PLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R + G++ A+D+H N++L V E VE+ ++ ++ R I +L
Sbjct: 29 NAQVLINCRNNRKILGRVKAFDRHCNLLLTGVRE--IWVEVVKDKKKKKKINKDRYISIL 86
Query: 83 FVRGDGVILV 92
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + ++ + +RN + L ++ A+D+H NMVL +V+E T V + ++
Sbjct: 22 PLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 81
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 82 KPVNKDRFISKMFLRGDSVILV 103
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 9/77 (11%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V ++++RV+ G L A+D+H+N+VL D +E V+ EE+ K KRS+ +
Sbjct: 5 INYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQE-YRRVKKGEES-----KELKRSLGL 58
Query: 82 LFVRGDGVILV---SPP 95
+ +RG+ ++ +PP
Sbjct: 59 IMLRGENIVTFVAEAPP 75
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ ++ +V V RN R L ++ A+D+H NMVL +V+E T + ++
Sbjct: 29 PLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKA 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 89 KPVNKDRFISKMFLRGDSVILV 110
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ +RV VK+R+ +RG L ++DQH+N++L D EE + V + T
Sbjct: 15 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVIDNVILKRGT------------- 61
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ VSP
Sbjct: 62 -MVVRGENVLFVSP 74
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN R L ++ A+D+H NMVL +V E T + + ++ ++ + I
Sbjct: 40 NTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISK 99
Query: 82 LFVRGDGVILV 92
+F+RGD VILV
Sbjct: 100 MFLRGDSVILV 110
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN R L ++ A+D+H NMVL +V E T + + ++ ++ + I
Sbjct: 40 NTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISK 99
Query: 82 LFVRGDGVILV 92
+F+RGD VILV
Sbjct: 100 MFLRGDSVILV 110
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + + R I +F+
Sbjct: 42 QVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNSKGKKGKPVNKDRFISKMFL 101
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 102 RGDSVILV 109
>gi|289580746|ref|YP_003479212.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|289530299|gb|ADD04650.1| Like-Sm ribonucleoprotein core [Natrialba magadii ATCC 43099]
Length = 287
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 5 QIPTISV----KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL------GDV 54
+ P+ +V PLD++ SL ERV V++++ G+L YDQH+N+VL D
Sbjct: 195 KCPSTAVFRMSGRPLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGADG 254
Query: 55 EETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
++ E + + E + TT +RGD V+ ++P
Sbjct: 255 ADSDDEAETESQAAEPVEDTT-------IIRGDNVVSITP 287
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ + ++ V +RN R L ++ A+D+H NMVL +V+E T + + I
Sbjct: 29 PLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP-KGKGKQPI 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 NKD--RFISKMFLRGDSVILV 106
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 8 TISVKEPLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDE 65
+ +K PL L+ ++ + V V +RN R + GK+ AYD+H N+++ D +E T +
Sbjct: 15 AMEMKGPLSLVHRAMVKMMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMRGKNR 74
Query: 66 ETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ R + +F+RGD VILV+
Sbjct: 75 GKKKRQGCGFSRRLGNVFIRGDTVILVA 102
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ RV V + + R++ G+ A+D+H+N+VL D EE E E + KR + +
Sbjct: 14 LNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGE-EREVKRMLGL 72
Query: 82 LFVRGDGVILVS----PPN 96
L +RG+ +I ++ PPN
Sbjct: 73 LILRGENIISMTAEAPPPN 91
>gi|340519781|gb|EGR50019.1| predicted protein [Trichoderma reesei QM6a]
Length = 100
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ + VK R +RG L YD +N+VL V+ET+ E +E
Sbjct: 16 LDLAKY-MDKEIIVKFNGGREVRGTLKGYDALMNLVLDQVQETLRDDEGNE--------- 65
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
+ RS+ ++ VRG ++L+SP + +
Sbjct: 66 SSRSLGLVVVRGTLLVLISPADGS 89
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
++V + RN R + ++ A+D+H NMVL +V+E T + + R I +
Sbjct: 91 SDQVLINCRNNRKILARVKAFDRHCNMVLENVKEMWTETPRTGKGRKAKPVNKDRYISKM 150
Query: 83 FVRGDGVILV 92
F+RGD VILV
Sbjct: 151 FLRGDSVILV 160
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+PL+L+ + R+HV M+N++ L G L +D +NMVL DV+E V T E++
Sbjct: 6 QPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKEYVIT-----PNGREVH 60
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRTP 99
+ K + + G + ++ P + P
Sbjct: 61 RQKK-----ILLNGSNIAILVPGSDGP 82
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 28 PLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKA 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI++
Sbjct: 88 KPVAKDRFITKMFLRGDSVIII 109
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D E + E + K
Sbjct: 13 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMI--------QDGEVVKK 64
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 65 YGK-----IVIRGDNVLAISP 80
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V +++ R L GK A+D+H+N+VLGD EE + + +++T EE + +R++
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEE--REERRTL 70
Query: 80 PMLFVRGDGVI 90
++ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|357144783|ref|XP_003573412.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like
[Brachypodium distachyon]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL +V +E + E + + +
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEV------IEFEREQDDPLKLS 61
Query: 75 TK-RSIPMLFVRGDGVILVSPPNRT 98
K R + ++ RG V+LVSP T
Sbjct: 62 AKTRQLGLIVCRGTAVMLVSPTEGT 86
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ RV V + + R++ G+ A+D+H+N+VL D EE E E + KR + +
Sbjct: 14 LNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGE-EREVKRMLGL 72
Query: 82 LFVRGDGVILVS----PPN 96
L +RG+ +I ++ PPN
Sbjct: 73 LILRGENIISMTAEAPPPN 91
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L V V+++ R RG L YD H+N+VL D EE + E +
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEI--------QNGEVV-- 53
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 54 ---RKLGSVVIRGDTVVFVSP 71
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
Query: 14 PLDLIRLSLDERVHVKM--RNERVLRG----KLHAYDQHLNMVLGDVEETVTTVEIDEET 67
PL L+ +L E+ VK+ RNER +RG + A+D++ N V D+EE + E+
Sbjct: 116 PLSLLYRALHEKKRVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEERYSVRVRKEKE 175
Query: 68 Y-----------EEIYKTTKRSIPMLFVRGDGVILVS 93
Y + + +R + +F+RG+ V+LV+
Sbjct: 176 YVNGKGETKTRRRRVIEQRERKVSQMFLRGESVVLVA 212
>gi|388499482|gb|AFK37807.1| unknown [Lotus japonicus]
Length = 99
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL +E V + ++ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTAQT 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RS+ ++ RG V+LVSP + T
Sbjct: 65 --RSLGLIVCRGTAVMLVSPTDGT 86
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ RV V + + R++ G+ A+D+H+N+VL D EE E E + KR + +
Sbjct: 14 LNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGE-EREVKRMLGL 72
Query: 82 LFVRGDGVILVS----PPN 96
L +RG+ +I ++ PPN
Sbjct: 73 LILRGENIISMTAEAPPPN 91
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium
vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + RN R L ++ A+D+H N++L +V E VE+ ++ ++ R I +L
Sbjct: 29 NAQVLINCRNNRKLLARVKAFDRHCNLLLTEVRE--IWVEVVKDKKKKKKINKDRYISIL 86
Query: 83 FVRGDGVILV 92
F+RGD VIL+
Sbjct: 87 FLRGDSVILI 96
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL LI + + +V + RN R + ++ A+D+H NM+L D E T ++
Sbjct: 20 PLSLIAECVMDNSQVLINCRNNRKILARVKAFDRHCNMILVDAREMWTVKS--SGGGKQK 77
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+ R I +F+RGD VI+V
Sbjct: 78 FVNKDRFISKMFLRGDSVIVV 98
>gi|358385010|gb|EHK22607.1| hypothetical protein TRIVIDRAFT_60544 [Trichoderma virens Gv29-8]
Length = 132
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ + VK R +RG L YD +N+VL +V+ET+ DEE E
Sbjct: 46 LDLAKY-MDKEITVKFNGGREVRGTLKGYDALMNLVLDEVQETLR----DEEGNE----- 95
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
+ R + ++ VRG ++L+SP + +
Sbjct: 96 SSRPLGLVVVRGTLLVLISPADGS 119
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V V RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F RGD VI+V
Sbjct: 88 KPVNKDRYVSKMFQRGDSVIVV 109
>gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
gi|408391559|gb|EKJ70933.1| hypothetical protein FPSE_08901 [Fusarium pseudograminearum CS3096]
Length = 131
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R ++G L YD +N+VL DV E V E +E T
Sbjct: 45 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNEST------- 96
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ VRG ++LVSP
Sbjct: 97 --RSLGLVVVRGTLLVLVSP 114
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ V V +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|424811999|ref|ZP_18237239.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756221|gb|EGQ39804.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
Length = 75
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ + V +++++E V+ G L A+D HLNM L D +T E+ E+ K
Sbjct: 8 PLDVLGDARGTNVMIELKDETVVSGTLRAFDSHLNMWLDDASKT------GEDGREDFGK 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ +RGD V+ VSP
Sbjct: 62 --------ILIRGDNVVHVSP 74
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 15/74 (20%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
++ + V VK+R+ +V RG+L +D HLN+VL E EE+ + R +
Sbjct: 12 AIGKIVLVKLRDGKV-RGRLKTFDMHLNIVL--------------EDAEEVREDQTRPLG 56
Query: 81 MLFVRGDGVILVSP 94
+ +RGDGV+ VSP
Sbjct: 57 TILIRGDGVVFVSP 70
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
P+ L+ S+++RV + +++ RVL G L YD ++NMVL DV+E V
Sbjct: 4 PMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVS----------- 52
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RG V+ + P
Sbjct: 53 ---RKLGTVVIRGSNVVRIVP 70
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+N+R G L +D +NMVL DV I+ ET E K
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDV--------IEYETTPEGKK 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTPA 100
TK S +L G+ + ++ P + P
Sbjct: 59 ETKLSQTLL--NGNNICMLIPGSTGPG 83
>gi|330802101|ref|XP_003289059.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
gi|325080893|gb|EGC34430.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
Length = 250
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ RV+ G+ A+D+H+N+V+ D EE + +E EE KR++ M
Sbjct: 14 INYRMKVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREE-----KRTLGM 68
Query: 82 LFVRGDGVILVS 93
L +RG+ V+ +S
Sbjct: 69 LLIRGETVVSMS 80
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + ++H+ M+N++ + G L +D ++NMVL DV E E + +
Sbjct: 10 PLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTEF--------EFTAQGKR 61
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
TK +P + + G ++++ P P
Sbjct: 62 ITK--LPHILLNGSNIVMMVPGGEGP 85
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D + +E E T
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAQ----LIEGGEVT------ 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + +RGD V+ +SP
Sbjct: 55 ---KKYGKIVIRGDNVLAISP 72
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ RV V ++++R+L G L A+D+H+N+VL D +E + + E+ K KRS+
Sbjct: 5 INYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQEYRSIKKKGED-----LKEVKRSLGF 59
Query: 82 LFVRGDGVILV---SPP 95
+ +RG+ ++ + +PP
Sbjct: 60 IVLRGENIVTITAEAPP 76
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V +++ R L GK A+D+H+N+VLGD EE + + +++T EE + +R++
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 70
Query: 80 PMLFVRGDGVI 90
++ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|400600902|gb|EJP68570.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 255
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L +D +N+VL DV+ETV E +E T
Sbjct: 169 LDLTKY-MDKQITVKFNGGREVMGTLKGFDALMNLVLDDVQETVRDEEGNEST------- 220
Query: 75 TKRSIPMLFVRGDGVILVSP 94
R + ++ VRG ++L+SP
Sbjct: 221 --RPLGLVVVRGTLLVLISP 238
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ V V +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 72 PLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLAGGKKGR 131
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 132 PVNKDRFISKMFLRGDSVILV 152
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + ++
Sbjct: 18 PLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKA 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI++
Sbjct: 78 KPVAKDRFITKMFLRGDSVIII 99
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H N+VL +V+E T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKGKKKA 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 87 KPVNKDRFISKMFLRGDAVIIV 108
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V +++ R L GK A+D+H+N+VLGD EE + + +++T EE + +R++
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE--REERRTL 70
Query: 80 PMLFVRGDGVI 90
++ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|296808563|ref|XP_002844620.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
gi|238844103|gb|EEQ33765.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
Length = 155
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V+VK R + G L YDQ +N+VL DV+ET+ ++
Sbjct: 69 LDLTKY-MDKEVNVKFNGGREITGVLKGYDQLMNLVLDDVKETM---------RDDNDNI 118
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 119 TTRSLGLIVARGTLLVLLSPADGS 142
>gi|213404126|ref|XP_002172835.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
gi|212000882|gb|EEB06542.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
Length = 112
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL R D+R+ K+ R + G L YDQ +N+VL DVEE + E D +E
Sbjct: 26 LDLSRYQ-DQRIQAKLTGGRQISGVLKGYDQLMNLVLDDVEENLRDPE-DGRVLDET--- 80
Query: 75 TKRSIPMLFVRGDGVILVSP 94
R + ++ VRG ++L++P
Sbjct: 81 --RKLGLVVVRGTTLVLLAP 98
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I + PLD + S++ V VK+++ + ++G+L AYD HLN+ L + +
Sbjct: 2 IDNQRPLDALGKSINTNVLVKLKDGQTVKGRLKAYDLHLNVALENAK------------- 48
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
+ ++ P++ VRGD V+ +S
Sbjct: 49 ---FDGEEKEYPLIVVRGDNVLFIS 70
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 28 VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGD 87
+ RN L GK+ A+D+H N+VL +V+E T + + + + +R I LF+RGD
Sbjct: 45 ISCRNNHKLIGKVRAFDRHCNLVLENVKELWTEDIKNNKGKKIKSISKERFISKLFLRGD 104
Query: 88 GVILV 92
VI++
Sbjct: 105 SVIII 109
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L V V+++ R RG L+ YD H+N+VL + EE + E I
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEI--------QGGEVI-- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 55 ---RKLGSVVIRGDTVVFVSP 72
>gi|358393465|gb|EHK42866.1| hypothetical protein TRIATDRAFT_300894 [Trichoderma atroviride IMI
206040]
Length = 139
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ + VK R +RG L YD +N+VL +V+ET+ + +E
Sbjct: 53 LDLAKY-MDKAIIVKFNGGREVRGTLKGYDALMNLVLDEVQETLRDDQGNE--------- 102
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ VRG ++L+SP + +
Sbjct: 103 TTRSLGLVVVRGTLLVLISPADGS 126
>gi|315043418|ref|XP_003171085.1| RH73529p [Arthroderma gypseum CBS 118893]
gi|311344874|gb|EFR04077.1| RH73529p [Arthroderma gypseum CBS 118893]
Length = 151
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V+VK R + G L YDQ +N+VL DV+ET+ ++
Sbjct: 65 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETMR---------DDNDNV 114
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 115 TTRSLGLIVARGTLLVLLSPADGS 138
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 10 SVKEPLDLIRLSLDERVH--VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
S + P L+ + +RV V R+ + L G L AYD+H N+++ V E + D
Sbjct: 238 SPRTPFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQESQPDRPP 297
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPP 95
+R I LFVRGDGVI + P
Sbjct: 298 -----DLRERFISRLFVRGDGVIFIVRP 320
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G+ A+D+H NM L +V+E T V + ++
Sbjct: 19 PLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKF 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 79 KPVNKDRYISKMFLRGDSVIVV 100
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDLVIVV 109
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Query: 30 MRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89
M+ + RG L YDQHLN+VL +VEE + +K ++ VRGD V
Sbjct: 1 MKGNKEYRGVLDGYDQHLNLVLKNVEEIING-------------ESKGVHNVVIVRGDNV 47
Query: 90 ILVSPP 95
I +SPP
Sbjct: 48 IYISPP 53
>gi|281200299|gb|EFA74520.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 250
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ RV+ G+ A+D+H+N+V+ D EE + +E EE KR++ M
Sbjct: 13 INWRIRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREE-----KRTLGM 67
Query: 82 LFVRGDGVILVS 93
+ +RG+ V+ +S
Sbjct: 68 VLIRGETVVSLS 79
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D + +E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEFRGRLIGYDIHLNVVLADAQ----LIEDGE-------- 52
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K++ + +RGD V+ +SP
Sbjct: 53 -PKKNYGKIVIRGDNVLAISP 72
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P L+ S+ E RV ++ RN + L + A+D+H N+VL V+ EI E E
Sbjct: 28 PFSLLDTSMKENKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQ------EITESHGSE- 80
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R+I LF+RG+ V+ +
Sbjct: 81 --QKQRTIENLFLRGESVVFI 99
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ + V +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 34 PLSILQTAVRSHIQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE-TYEEIY 72
PL LI + R+++ +R +R + G L +D+++NMVL +VEE T+ ++E + +++
Sbjct: 22 PLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASNKKLK 81
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
+ + + + G+ + L+ P + +
Sbjct: 82 RVLVNRLDTILLSGNNIALLIPGGDSKSF 110
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLALSP 72
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V +E + E
Sbjct: 29 PLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENV----------KEMWVER 78
Query: 72 YKTTK----------RSIPMLFVRGDGVILV 92
KT+K R I +F+RGD VI+V
Sbjct: 79 PKTSKGKGGQPVNRDRFISKMFLRGDSVIIV 109
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L+ V V+++ R RG+L YD H+N+VL + EE D E
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEELK-----DGEIV----- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ +SP
Sbjct: 55 ---RKLGSVVIRGDNVVYLSP 72
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 14/84 (16%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI S++ +V V +RN + ++ A+D+H NMVL +V+E T E+
Sbjct: 30 PMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT---------EKK 80
Query: 72 YKTT---KRSIPMLFVRGDGVILV 92
K+T +R I LF+RGD VI++
Sbjct: 81 GKSTVNRERFISKLFLRGDSVIVI 104
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N++ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDV------TEFD-------YS 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
++ +P + + G+ V ++ P P
Sbjct: 54 GSQVKLPKILLNGNNVCMLIPGGEGP 79
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G+ A+D+H NMVL +++E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPML 82
+V + +N + L G++ A+D H NMVL +V E T V + ++ K R I +
Sbjct: 30 NQVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 89
Query: 83 FVRGDGVILV 92
F+RGD VI+V
Sbjct: 90 FLRGDSVIIV 99
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ ++V + RN + L ++ A+D+H NMVL +V+E T +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRKTSSGKKGK 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGDGV+LV
Sbjct: 89 PINRDRFISKMFLRGDGVVLV 109
>gi|115475055|ref|NP_001061124.1| Os08g0177700 [Oryza sativa Japonica Group]
gi|38636805|dbj|BAD03046.1| putative snRNP splicing factor -related [Oryza sativa Japonica
Group]
gi|38636982|dbj|BAD03242.1| putative snRNP splicing factor -related [Oryza sativa Japonica
Group]
gi|113623093|dbj|BAF23038.1| Os08g0177700 [Oryza sativa Japonica Group]
gi|218200565|gb|EEC82992.1| hypothetical protein OsI_28028 [Oryza sativa Indica Group]
Length = 98
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + VE + E + + +
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA------VEFEREQDDPLKLS 61
Query: 75 TK-RSIPMLFVRGDGVILVSPPNRT 98
K R + ++ RG V+LVSP + T
Sbjct: 62 GKTRQLGLIVCRGTAVMLVSPTDGT 86
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ L+ ++ R V + +RN + ++ ++D+H NMVL +V+E T E + T +E
Sbjct: 29 PMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWTEKEGKKLTNKE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI+V
Sbjct: 88 -----RFISKLFLRGDSVIVV 103
>gi|345563731|gb|EGX46716.1| hypothetical protein AOL_s00097g464 [Arthrobotrys oligospora ATCC
24927]
Length = 168
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+R+ VK R + G L YDQ +N+VL DV+E + E +E+T
Sbjct: 80 LDLAKY-MDKRIIVKFSGGREVTGALKGYDQLMNLVLDDVQEVMRDDEGNEQT------- 131
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG ++L+SP + T
Sbjct: 132 --RELGLVVARGPLLVLISPVDGT 153
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV 61
+ QI S PL+LI + R+ V M+ R GKL +D ++NMVL DV E TT
Sbjct: 847 QTNQIRMASTILPLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTA 906
Query: 62 EIDEETYEEIYKTTKRSIPMLFVRGDG 88
E + T + I ML G+G
Sbjct: 907 EGHKITNLKQTLLNGNQICMLVPGGNG 933
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD V V ++ RGKL YD HLN+VL D + Y + +
Sbjct: 5 PLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADAD------------YIQDGE 52
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
KR + VRGD V+ +SP
Sbjct: 53 VVKRY-GKIVVRGDNVLAISP 72
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ V V +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 34 PLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLAGGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------REGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ +RGD V+ VSP
Sbjct: 57 FGS-----VVIRGDNVVYVSP 72
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI 63
+ +P + PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E
Sbjct: 3 QSLPNPNTLLPLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY------ 56
Query: 64 DEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPA 100
E+ E K TK + + + G+ + ++ P P
Sbjct: 57 --ESTPEGRKITK--LDQILLNGNNIAMLVPGGEMPG 89
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 14/79 (17%)
Query: 16 DLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT 75
DL RL LD++++VK+ R ++G L +D +N+ L D E V+ E
Sbjct: 10 DLTRL-LDKKLNVKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPTE------------- 55
Query: 76 KRSIPMLFVRGDGVILVSP 94
K I M+ +RG+ +IL+ P
Sbjct: 56 KYEIGMVLIRGNSIILMEP 74
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 12 KEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
K PL ++ S+ + +V + +RN L ++ A+D+H NMVL +V+E T V + +
Sbjct: 34 KGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 93
Query: 70 EIYKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 94 AAKPVNKDRFVSKMFLRGDSVIIV 117
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 23 PLSILQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPKTSGGKKGR 82
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 83 PVNKDRFISKMFLRGDSVILV 103
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-TVTTVEIDEETYEEIYKTTKRSIP 80
L+ RV V +++ R G A+D+H+N++LGD EE +I++ + KR +
Sbjct: 13 LNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATEREEKRVLG 72
Query: 81 MLFVRGDGVI 90
++ +RG+ ++
Sbjct: 73 LVLLRGENIV 82
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + N + L G++ A+D+H NMVL +V+E T V + + R I +
Sbjct: 39 NTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSKPVNKDRYISKM 98
Query: 83 FVRGDGVILV 92
F+RGD VI+V
Sbjct: 99 FLRGDLVIVV 108
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE--IDEETYE 69
PL L++ ++ +V + RN R L ++ A+D+H NMVL +V+E T D +
Sbjct: 36 PLSLLQTAVRNHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLTDGKRGR 95
Query: 70 EIYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 96 PVNK--DRFISKMFLRGDSVILV 116
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ +RV VK+R+ +RG L ++DQH+N++L D EE V I+K
Sbjct: 19 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVVDN---------NIFKR-----G 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ VSP
Sbjct: 65 TMVVRGENVLFVSP 78
>gi|448399368|ref|ZP_21570665.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
gi|445668989|gb|ELZ21605.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
Length = 75
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL +RV V++++ G+L YDQH+N+VL DV T+ + E + EE
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVLEDV-----TIPV-EGSVEEDAP 58
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+I +RGD V+ ++P
Sbjct: 59 VEDTTI----IRGDNVVSITP 75
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ ++ G L +D ++NMVL DV +E D ++
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDV------IEFDHQS------ 54
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
++ +P + + G+G+ ++ P P
Sbjct: 55 GSQTKLPKILLNGNGIAMLVPGGEGP 80
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL +RV V++++ G L YDQH+N+VL DV + VE + E
Sbjct: 65 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV---MIPVEGNVEEEPPAED 121
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 122 TT-------IIRGDNVVSITP 135
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
D + + RN L GK+ A+D+H N+VL +V+E T + + + + +R I +
Sbjct: 40 DSPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTEDIKNNKGKKIKSISKERFISKM 99
Query: 83 FVRGDGVILV 92
F+RGD VI++
Sbjct: 100 FLRGDSVIII 109
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMV--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 20 LSL-DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTK 76
LSL + R+ + + + R L G++ A+D+H+N+VL D EE V + + D+ E+ K
Sbjct: 13 LSLVNWRLKITLNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQGGVEQ---ELK 69
Query: 77 RSIPMLFVRGDGVILVSPPNRTPA 100
R++ ++ +RG+ V+ +S PA
Sbjct: 70 RTLGLIILRGETVVSISVEGPPPA 93
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ L++ +++ V + RN L K+ A+D+H N++L +V+E + T + ++I
Sbjct: 29 PMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKE-LWTESVKNNKGKKI 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
T+K R + +F+RGD V++V
Sbjct: 88 KSTSKERFVSKMFLRGDSVVIV 109
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
TI + +PL+LI + + V M++++ L G L +D ++NM+L +V E +
Sbjct: 9 TIPIIQPLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSYS------- 61
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E+ T+ +P + + G+ V +++P
Sbjct: 62 -EDGSSRTESKLPSIILNGNNVAILAP 87
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL +RV V++++ G L YDQH+N+VL E+ + VE + E
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVL---EDVMIPVEGNVEEEPPAED 61
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 62 TT-------IIRGDNVVSITP 75
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE--I 71
PLD++ SL +RV V++++ G L YDQH+N+VL DV T+ ++ EE
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPVEGNVEEEPPA 59
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
TT +RGD V+ ++P
Sbjct: 60 EDTT-------IIRGDNVVSITP 75
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + +RN L ++ AYD+H+N++L DV+E T V + K R +
Sbjct: 33 NTQVLINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTEVSKGGKGRTRGTAVNKDRYVSK 92
Query: 82 LFVRGDGVILV 92
+F+RGD VILV
Sbjct: 93 MFLRGDSVILV 103
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N+R G L +D +NMVL DV E TT E ++T
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKT------ 60
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ + G+ + ++ P + P
Sbjct: 61 ----QLAQTLLNGNNICMLIPGSSGP 82
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 14 PLDLIRLSLDERVHVKM--RNERVLRGK----LHAYDQHLNMVLGDVEETVT-------- 59
PL L++ +R V++ R+ R +RG L A+D+H+N+VL DVEE T
Sbjct: 109 PLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQYTVLLQVQRV 168
Query: 60 ------TVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVS 93
+ ++ + + +R + +FVRGD V+LVS
Sbjct: 169 KPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGDSVVLVS 208
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|327351953|gb|EGE80810.1| U6 snRNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 165
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +++ V VK R + G L YDQ +N+VL DV+ET+ E ++
Sbjct: 79 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQ--------- 128
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 129 TTRSLGLIVARGTLLVLISP 148
>gi|239612791|gb|EEQ89778.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 164
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +++ V VK R + G L YDQ +N+VL DV+ET+ E ++
Sbjct: 78 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQ--------- 127
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 128 TTRSLGLIVARGTLLVLISP 147
>gi|261194282|ref|XP_002623546.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239588560|gb|EEQ71203.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 160
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +++ V VK R + G L YDQ +N+VL DV+ET+ E ++
Sbjct: 74 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQ--------- 123
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 124 TTRSLGLIVARGTLLVLISP 143
>gi|388507056|gb|AFK41594.1| unknown [Medicago truncatula]
Length = 99
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL +E V + ++ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTDQT 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RS+ ++ RG V+LVSP + T
Sbjct: 65 --RSLGLIVCRGTAVMLVSPTDGT 86
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ +V + +RN + L ++ A+D+H NMVL +V+E T ET +
Sbjct: 29 PLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWT------ETPKGK 82
Query: 72 YK---TTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 83 GKKPVNKDRFISKMFLRGDSVILV 106
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSPP 95
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISPS 73
>gi|327294916|ref|XP_003232153.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326465325|gb|EGD90778.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 147
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V+VK R + G L YDQ +N+VL DV+ET+ ++
Sbjct: 61 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETMR---------DDNDNV 110
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 111 TTRSLGLIVARGTLLVLLSPADGS 134
>gi|344211722|ref|YP_004796042.1| snRNP-like protein [Haloarcula hispanica ATCC 33960]
gi|448666742|ref|ZP_21685387.1| snRNP-like protein [Haloarcula amylolytica JCM 13557]
gi|448688412|ref|ZP_21694245.1| snRNP-like protein [Haloarcula japonica DSM 6131]
gi|343783077|gb|AEM57054.1| snRNP-like protein [Haloarcula hispanica ATCC 33960]
gi|445771873|gb|EMA22929.1| snRNP-like protein [Haloarcula amylolytica JCM 13557]
gi|445779473|gb|EMA30403.1| snRNP-like protein [Haloarcula japonica DSM 6131]
Length = 60
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV 58
PLD++ SL E V V+++ + G+L YDQH+N+V+ D + T+
Sbjct: 5 PLDVLEASLGETVTVQLKGGEIFEGELTGYDQHMNLVVEDEDTTI 49
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVR 85
V + +RN L K+ A+D+H NM+L +V+E T D+ + + +R + +F+R
Sbjct: 43 VLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNPDDRNKKMM---RERFVSKMFLR 99
Query: 86 GDGVILV 92
GD VI+V
Sbjct: 100 GDSVIVV 106
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 22/91 (24%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN R L G++ A+D+H NMVL +V +E + E
Sbjct: 29 PLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENV----------KEMWVER 78
Query: 72 YKTTK----------RSIPMLFVRGDGVILV 92
KT K R I +F+RGD VI+V
Sbjct: 79 PKTAKGKGGQPVNRDRFISKMFLRGDSVIIV 109
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P L+ ++ E RV ++ RN + L + A+D+H N+VL V+E +T E+
Sbjct: 28 PFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQE-ITESHGSEQ----- 81
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R+I LF+RG+ VI +
Sbjct: 82 ---KQRTIENLFLRGESVIFI 99
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ +V + +RN + L ++ A+D+H NMVL +V+E T ET +
Sbjct: 83 PLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWT------ETPKGK 136
Query: 72 YK---TTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 137 GKKPVNKDRFISKMFLRGDSVILV 160
>gi|15227722|ref|NP_178480.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|30678085|ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|4582434|gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana]
gi|27765062|gb|AAO23652.1| At2g03870 [Arabidopsis thaliana]
gi|110742944|dbj|BAE99367.1| putative snRNP splicing factor [Arabidopsis thaliana]
gi|330250666|gb|AEC05760.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
gi|330250667|gb|AEC05761.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana]
Length = 99
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E V +++ KT
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFV-------RDHDDPLKT 60
Query: 75 T--KRSIPMLFVRGDGVILVSPPNRT 98
T R + ++ RG V+LVSP + T
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGT 86
>gi|407919352|gb|EKG12602.1| hypothetical protein MPH_10268 [Macrophomina phaseolina MS6]
Length = 81
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+ + VK R + G L YDQ +N+VL DV+E + D+E E T RS+ +
Sbjct: 1 MDKGISVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMR----DDEGNE-----TTRSLGL 51
Query: 82 LFVRGDGVILVSP 94
+ RG ++L+SP
Sbjct: 52 IVARGTLLVLISP 64
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + +RN L ++ A+D+H NMVL DV+E T + ++ K R +
Sbjct: 7 NTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSK 66
Query: 82 LFVRGDGVILV 92
+F+RGD V+LV
Sbjct: 67 MFLRGDSVVLV 77
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ +V + RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLSGGGKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|448353248|ref|ZP_21542025.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
gi|445640825|gb|ELY93911.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
Length = 84
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL------GDVEETVTTVEIDEET 67
PLD++ SL ERV V++++ G+L YDQH+N+VL D ++ E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADAADGADSDDEAETESPA 64
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E + TT +RGD V+ ++P
Sbjct: 65 VEPVEDTT-------IIRGDNVVSITP 84
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ ++V VK+R+ +RG L ++DQH+N++L D EE ID Y KR
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEI-----IDGNVY-------KRG-- 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ +SP
Sbjct: 65 TIVVRGENVLFISP 78
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ ++ + +RN R L ++ A+D+H NMVL +V+E T V + + +
Sbjct: 29 PLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVP-KGKGKKPV 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 88 NKD--RFISKMFLRGDSVILV 106
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN R L ++ A+D+H NMVL +V+E T + ++ + R I
Sbjct: 39 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKQQPVNRDRFISK 98
Query: 82 LFVRGDGVILV 92
+F+RGD VI+V
Sbjct: 99 MFLRGDSVIIV 109
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N++ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDV------TEFD-------YS 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ V ++ P P
Sbjct: 54 GAQIKLPKILLNGNNVCMLIPGGEGP 79
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + G++ A+D+H NMVL V+E T + + ++
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKA 86
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD +ILV
Sbjct: 87 KPVNKDRYISKMFLRGDSIILV 108
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ RV+ G+ A+D+H+N+V+ D EE + +E EE KR++ M
Sbjct: 14 INYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREE-----KRTLGM 68
Query: 82 LFVRGDGVILVS 93
+ +RG+ V+ +S
Sbjct: 69 ILIRGETVVSMS 80
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ +V + RN + L ++ A+D+H NMVL +V+E T E+T
Sbjct: 32 PLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWT-----EKTKTAS 86
Query: 72 YK-----TTKRSIPMLFVRGDGVILV 92
K T R I +F+RGD VILV
Sbjct: 87 GKPGKTVTKDRFISKMFLRGDTVILV 112
>gi|297814702|ref|XP_002875234.1| hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp.
lyrata]
gi|297321072|gb|EFH51493.1| hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp.
lyrata]
Length = 99
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E V +++ KT
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFV-------RDHDDPLKT 60
Query: 75 T--KRSIPMLFVRGDGVILVSPPNRT 98
T R + ++ RG V+LVSP + T
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGT 86
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVT-TVEIDEETYEE 70
PL +++ ++ R V RN R + ++ A+D+H NMVL + +E T T + +
Sbjct: 34 PLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLSNGSMGR 93
Query: 71 IYKTTK-RSIPMLFVRGDGVILV 92
K K R I LF+RGD VILV
Sbjct: 94 --KVNKDRFISKLFLRGDSVILV 114
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ + +++ R G A+D+H+N++LGD EE T + +E + KRS+
Sbjct: 5 INYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRT---KPKNSKEAERDEKRSLGF 61
Query: 82 LFVRGDGVI 90
+ +RG ++
Sbjct: 62 VLLRGQNIV 70
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 12 KEPLDLIRLSLDER-VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
K PLD++ L+ + V V ++ R +RG L YD H+N+VL + EE
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVL--------------DKAEE 48
Query: 71 IYKTTKRSIPMLFVRGDGVILVSP 94
+ + + L VRGD VI +SP
Sbjct: 49 VENGQVQKVGTLIVRGDNVIYISP 72
>gi|358392771|gb|EHK42175.1| hypothetical protein TRIATDRAFT_312688 [Trichoderma atroviride IMI
206040]
Length = 216
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--------TVTTVEIDEETYEEIYK 73
++ R+ V +++ R L G++ AYD+H+N+VL D EE T + + +
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQTKAAAPSGSSAGQTVVQ 72
Query: 74 TTKRSIPMLFVRGDGVILV---SPPNRTPA 100
KR++ ++ VRG +I + SPP P+
Sbjct: 73 EEKRTLGLVIVRGAHIISLTVESPPPADPS 102
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D + EE+ +
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALI--------QDGEEVKR 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT------ 75
++ R+ + + R G+L A+D+H+N+VL D EE TT +++Y+E+ K
Sbjct: 48 INFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTT----KKSYQELAKAKVGSQVK 103
Query: 76 ----KRSIPMLFVRGDGVILV 92
KR + ++ +RG+ V+ V
Sbjct: 104 VNEDKRFLGLIILRGEQVVSV 124
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 34 PLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|402223834|gb|EJU03898.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 120
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-----TVTTVEIDEETYEEIYKTTK 76
++ R+ V + + R L G++ A+D+H+N+VL D EE + T E D + + K
Sbjct: 15 INYRLRVTLNDGRELTGQMLAFDRHMNLVLADCEEFRKTRSKTKGESDGPAAVSMAQEIK 74
Query: 77 RSIPMLFVRGDGVILVS---PP 95
R++ ++ +RG+ ++ +S PP
Sbjct: 75 RTLGLVILRGETIVSISVEGPP 96
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D + EE+ +
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALI--------QEGEEVKR 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V ++++RV+ G L A+D+H+N+VL D +E V+ EE K KRS+ +
Sbjct: 5 INYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQE-YRRVKKGEEP-----KELKRSLGL 58
Query: 82 LFVRGDGVILV---SPP 95
+ +RG+ ++ +PP
Sbjct: 59 IMLRGENIVTFVAEAPP 75
>gi|402467605|gb|EJW02881.1| hypothetical protein EDEG_02705 [Edhazardia aedis USNM 41457]
Length = 68
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEE 70
+K+P +L+ E + +++R+ ++++G LHAYD+H+N+++ +V+
Sbjct: 1 MKDPSELLSTYTQEEIMIRLRDGQLIKGNLHAYDEHMNVIMSNVKGCEN----------- 49
Query: 71 IYKTTKRSIPMLFVRGDGVILVS 93
+LFVRG+ + L+
Sbjct: 50 ---------QLLFVRGESITLIG 63
>gi|226530979|ref|NP_001152342.1| LSM7-like [Zea mays]
gi|195651475|gb|ACG45205.1| LSM7-like [Zea mays]
gi|195655329|gb|ACG47132.1| LSM7-like [Zea mays]
gi|414585245|tpg|DAA35816.1| TPA: LSM7-like protein [Zea mays]
Length = 98
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
LDL + +D+ V VK+ R + G L YDQ LN+VL + VE + E + +
Sbjct: 8 ALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA------VEYEREQDDPLKL 60
Query: 74 TTK-RSIPMLFVRGDGVILVSPPNRT 98
+ K R + ++ RG V+LVSP + T
Sbjct: 61 SGKTRQLGLIVCRGTAVMLVSPTDGT 86
>gi|242077336|ref|XP_002448604.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
gi|241939787|gb|EES12932.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
Length = 98
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
LDL + +D+ V VK+ R + G L YDQ LN+VL + VE + E + +
Sbjct: 8 ALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA------VESEREQDDPLKL 60
Query: 74 TTK-RSIPMLFVRGDGVILVSPPNRT 98
+ K R + ++ RG V+LVSP + T
Sbjct: 61 SGKTRQLGLIVCRGTAVMLVSPTDGT 86
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL LI S+ + V + +RN + ++ A+D+H NMVL +V+E T ++ +E
Sbjct: 29 PLSLINDSVVSKTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKRGNKAENKE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI+V
Sbjct: 88 -----RFISKLFLRGDSVIVV 103
>gi|19074604|ref|NP_586110.1| putative U6 snRNA-ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon
cuniculi GB-M1]
gi|19075008|ref|NP_586514.1| Sm-LIKE PROTEIN [Encephalitozoon cuniculi GB-M1]
gi|51701683|sp|Q8SQH7.1|LSMH_ENCCU RecName: Full=Probable U6 snRNA-associated Sm-like protein
gi|19069246|emb|CAD25714.1| putative U6 snRNA-ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon
cuniculi GB-M1]
gi|19069733|emb|CAD26118.1| Sm-LIKE PROTEIN [Encephalitozoon cuniculi GB-M1]
gi|392512851|emb|CCI73984.1| ECU10_0065 [Encephalitozoon cuniculi GB-M1]
gi|449329639|gb|AGE95910.1| putative U6 snRNA-associated sm-like protein [Encephalitozoon
cuniculi]
Length = 70
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+P +++ L ERV VK ++ G L +D+H+N++L T ++VE E+
Sbjct: 3 DPFCFLKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML-----TCSSVEGSED------ 51
Query: 73 KTTKRSIPMLFVRGDGVILVSP 94
+LF+RG+ ++ V P
Sbjct: 52 -------KVLFLRGENILFVGP 66
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N++ G L +D ++NMVL DV E D Y
Sbjct: 26 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDV------TEFD-------YS 72
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ V ++ P P
Sbjct: 73 GAQIKLPKILLNGNNVCMLIPGGEGP 98
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
PL+LI + R+ V M+ R GKL +D ++NMVL DV E TT E
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAE 55
>gi|326473412|gb|EGD97421.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS 112818]
gi|326481892|gb|EGE05902.1| small nuclear ribonucleoprotein LSM7 [Trichophyton equinum CBS
127.97]
Length = 154
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V+VK R + G L YDQ +N+VL DV+ET+ ++
Sbjct: 68 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETMR---------DDNDNV 117
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T RS+ ++ RG ++L+SP + +
Sbjct: 118 TTRSLGLIVARGTLLVLLSPADGS 141
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NMVL DV E +T E T +
Sbjct: 10 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVSEFESTPEGRRVTKLDQIL 69
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 70 LNGNNITMLVPGGEG 84
>gi|342886030|gb|EGU85973.1| hypothetical protein FOXB_03482 [Fusarium oxysporum Fo5176]
Length = 133
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R ++G L YD +N+VL DV E V E ++ T
Sbjct: 47 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNDST------- 98
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ VRG ++LVSP
Sbjct: 99 --RSLGLVVVRGTLLVLVSP 116
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+N+R G L +D +NMVL DV E TT E +ET
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET------ 60
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTPA 100
+ + G+ + ++ P + P
Sbjct: 61 ----KLAQTLLNGNNICMLIPGSTGPG 83
>gi|336463585|gb|EGO51825.1| hypothetical protein NEUTE1DRAFT_53111 [Neurospora tetrasperma FGSC
2508]
Length = 144
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+R+ VK R + G L YD +N+VL DV+E V DEE E
Sbjct: 57 LDLKKY-MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR----DEEGNE----- 106
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T R + ++ RG ++++SP
Sbjct: 107 TTRPLGLVVARGTLLVVISP 126
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V + ER G+L +D +NMVL DV E +TT EE K
Sbjct: 7 PLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITT--------EEGVK 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
K +L G+ + ++ P + P
Sbjct: 59 KVKLQQTLL--NGNNICMLVPGSNGP 82
>gi|367041894|ref|XP_003651327.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
gi|346998589|gb|AEO64991.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
Length = 155
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+R+ VK R G L YD +N+VL DVEE + D+E T
Sbjct: 69 LDLKKY-MDQRITVKFNGGREATGVLKGYDALMNLVLDDVEEVLR----DDEG-----NT 118
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
T R + ++ VRG +++VSP N +
Sbjct: 119 TTRPLGLVVVRGTLLVVVSPVNGS 142
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ R L GK A+D+H+N+VLGD EE + EE + +R++ +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEE--REERRTLGL 70
Query: 82 LFVRGDGVI 90
+ +RG+ VI
Sbjct: 71 VLLRGEEVI 79
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ ++V VK+R+ +RG L ++DQH+N++L D EE ID Y KR
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVY-------KRG-- 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ +SP
Sbjct: 65 TMVVRGENVLFISP 78
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E+ T E T +
Sbjct: 16 PLELVDKCIGSRIHIIMKNDKEIVGTLKGFDDFVNMLLDDVTESEATPEGRRVTKLDQIL 75
Query: 74 TTKRSIPMLFVRGD 87
+I ML GD
Sbjct: 76 LNGNNITMLVPGGD 89
>gi|350297191|gb|EGZ78168.1| U6 snRNA-associated Sm-like protein LSm7 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+R+ VK R + G L YD +N+VL DV+E V DEE E T R + +
Sbjct: 1 MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR----DEEGNE-----TTRPLGL 51
Query: 82 LFVRGDGVILVSP 94
+ RG ++++SP
Sbjct: 52 VVARGTLLVVISP 64
>gi|312385157|gb|EFR29724.1| hypothetical protein AND_23652 [Anopheles darlingi]
Length = 64
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+R+ +K+ RV+ G L +D +N+VL +E+ EE T+ +I M
Sbjct: 1 MDKRLSLKLNGGRVVSGILRGFDPFMNVVL-------------DESIEECKDGTRNNIGM 47
Query: 82 LFVRGDGVILVSPPNR 97
+ +RG+ +ILV +R
Sbjct: 48 VVIRGNSIILVEALDR 63
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE---TVTTVEIDEETYEEIYKTTKRS 78
++ R+ V + + R L G++ A+D+H+N+VL D EE + EET E + KR+
Sbjct: 15 INWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPE--QEMKRT 72
Query: 79 IPMLFVRGDGVILVS 93
+ ++ +RG+ V+ +S
Sbjct: 73 LGLVILRGETVVSIS 87
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 34 PLSILQTAVRSHAQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|397643091|gb|EJK75649.1| hypothetical protein THAOC_02624 [Thalassiosira oceanica]
Length = 184
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV---TTVEIDEETY--- 68
L+L +L +D+ V VK R LRG L YD+ +N+VL D +E + VE Y
Sbjct: 74 LELAKL-IDQNVRVKCLGGRELRGALRGYDELVNLVLDDCDEFIRGWLGVETRISGYSND 132
Query: 69 -EEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
E+I T R + ++ +RG V LVSP + T
Sbjct: 133 PEKITNKT-RKLGLVVIRGTQVSLVSPEDGT 162
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ ++V VK+R+ +RG L ++DQH+N++L D EE ID Y KR
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVY-------KRG-- 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ +SP
Sbjct: 65 TMVVRGENVLFISP 78
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 152 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 211
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K I +F+RGD VI+V
Sbjct: 212 KPVNKDHYISKMFLRGDSVIVV 233
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ + + +V + RN R + ++ A+D+H NMVL +V E T E+ ++
Sbjct: 17 PLSVLQKCVKDNSQVLINCRNNRKILARVKAFDRHSNMVLENVREMWT--EVPHGGKKKA 74
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I LF+RGD VILV
Sbjct: 75 KPVNKDRFITKLFLRGDSVILV 96
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+R D V+LV
Sbjct: 88 KPVNKDRYISKMFLRQDSVVLV 109
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI+ ++ R V + +RN + ++ ++D+H NMVL +V+E + E + + +E
Sbjct: 29 PMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSEREGKKISNKE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI+V
Sbjct: 88 -----RFISKLFLRGDSVIVV 103
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 88
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+ G VI+V
Sbjct: 89 KPVNKDRYISKMFLCGGSVIVV 110
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|171676173|ref|XP_001903040.1| hypothetical protein [Podospora anserina S mat+]
gi|170936152|emb|CAP60812.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+R+ VK R + G L YD +N+VL +V+E V E +E
Sbjct: 65 LDLKKY-MDKRITVKFNGGREVTGTLKGYDALMNLVLDEVQEAVRDDEGNE--------- 114
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ VRG ++++SP
Sbjct: 115 TTRSLGLVVVRGTLLVVISP 134
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ ++ G L +D ++NMVL DV +E D ++
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDV------IEFDHQS------ 54
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+G+ ++ P P
Sbjct: 55 GNQTKLPKILLNGNGIAMLVPGGEGP 80
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+ +H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>gi|212531689|ref|XP_002146001.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
gi|210071365|gb|EEA25454.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK R + G L YDQ +N+VL DV+E + +E K
Sbjct: 65 LDLTKY-MDKEVIVKFNGGREVSGILKGYDQLMNLVLDDVKEKMR---------DESGKE 114
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
RS+ ++ RG ++L+SP + +
Sbjct: 115 ATRSLGLIVARGTLLVLISPADGS 138
>gi|154288569|ref|XP_001545066.1| hypothetical protein BC1G_16433 [Botryotinia fuckeliana B05.10]
gi|347835616|emb|CCD50188.1| hypothetical protein [Botryotinia fuckeliana]
Length = 140
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D++V VK R ++G L YD +N+VL DVEE +T D+E E
Sbjct: 55 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLT----DDEGTE----- 104
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ RG +I +SP
Sbjct: 105 AWRSLGLVVARGTLLIGISP 124
>gi|449544087|gb|EMD35061.1| hypothetical protein CERSUDRAFT_85794 [Ceriporiopsis
subvermispora B]
Length = 93
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + ++ER+ VK R + G L YDQ LN+VL +VEE + T E KT
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVEEQLQT--------EGELKT 60
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ +RG V L+SP
Sbjct: 61 --RSLGLVVLRGPTVTLLSP 78
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-----TVTTVEIDEETYEEIYKTTK 76
++ R+ V +R RVL G L A+D+H+N++LGD EE + + V + EE + K
Sbjct: 5 VNYRMRVVIRENRVLVGTLMAFDKHMNLILGDCEEFRKIRSKSGVAVVNGVIEE--REEK 62
Query: 77 RSIPMLFVRGDGVI 90
++ ++ +RG+ ++
Sbjct: 63 NTLGLVLLRGENIV 76
>gi|299740998|ref|XP_001834148.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
gi|298404507|gb|EAU87644.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + ++E++ VK R + G L YDQ LN+VL +VEE V+ YK
Sbjct: 24 LDLSKY-VNEKIRVKFTGGREVIGVLKGYDQLLNLVLDEVEEEVSA--------SNPYK- 73
Query: 75 TKRSIPMLFVRGDGVILVSP 94
KRS+ ++ +RG + L+SP
Sbjct: 74 -KRSLGLVVLRGPTITLLSP 92
>gi|440634700|gb|ELR04619.1| hypothetical protein GMDG_06901 [Geomyces destructans 20631-21]
Length = 137
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+R+ VK R + G L YD +N+VL DV+E + + +E
Sbjct: 52 LDLSKY-MDKRITVKFNGGREVTGALKGYDALMNLVLDDVQEVLRDDDGNE--------- 101
Query: 75 TKRSIPMLFVRGDGVILVSPPNRTPAL 101
T RS+ ++ RG ++LVSP + + ++
Sbjct: 102 TTRSLGLVVARGTLLVLVSPVDGSESI 128
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY---KTTKRS 78
++ R+ + + + R L G++ A+D+H+N+VL D EE V ++ EE + KRS
Sbjct: 15 INWRLKITLNDGRALTGQMLAFDRHMNLVLADCEE-FRRVRAKKKAGEEGPAPEQEIKRS 73
Query: 79 IPMLFVRGDGVILVS 93
+ ++ +RG+ V+ +S
Sbjct: 74 LGLVILRGESVVSLS 88
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ L++ +LD V + RN + ++ A+D+H NMVL +V+E + T + + +
Sbjct: 29 PMSLLQNALDNNTPVVISCRNNHKMVARVKAFDRHCNMVLENVKE-LWTESVKNGKGKVV 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
+K R + LF+RGD V++V
Sbjct: 88 NSVSKERFVSKLFLRGDSVVIV 109
>gi|297736225|emb|CBI24863.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E + + ++T ++
Sbjct: 17 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQT--- 72
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG V+LVSP + T
Sbjct: 73 --RRLGLIVCRGTAVMLVSPTDGT 94
>gi|169601382|ref|XP_001794113.1| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
gi|160705922|gb|EAT88760.2| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
Length = 214
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 17 LIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT- 75
++ S++ R+ V +++ R + G++ A+D+H+N+VL D EE T + T
Sbjct: 11 MVSKSINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGATQSVTE 70
Query: 76 ---KRSIPMLFVRGDGVILVS---PPNRTPA 100
+R+I + +RG VI +S PP PA
Sbjct: 71 TEERRAIGLTIIRGAHVISLSVDGPPPADPA 101
>gi|168045744|ref|XP_001775336.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673281|gb|EDQ59806.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D V VK+ R + G L YDQ LN+VL + E + + +T ++I
Sbjct: 9 LDLAKF-VDRGVSVKLSGGRQVTGILKGYDQLLNLVLDEATENLRDSDDPMKTTDQI--- 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG V+LV+P + T
Sbjct: 65 --RQLGLIVCRGTAVMLVAPTDGT 86
>gi|359487263|ref|XP_003633551.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like isoform
1 [Vitis vinifera]
gi|359487265|ref|XP_003633552.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like isoform
2 [Vitis vinifera]
gi|359487267|ref|XP_003633553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like isoform
3 [Vitis vinifera]
gi|359487269|ref|XP_003633554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like isoform
4 [Vitis vinifera]
Length = 99
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E + + ++T ++
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQT--- 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG V+LVSP + T
Sbjct: 65 --RRLGLIVCRGTAVMLVSPTDGT 86
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-TVTTVEIDEETYEEIY 72
PL+L+ + +HV M+NER G L +D ++NMVL DV+E VT I E +
Sbjct: 7 PLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIETPLGQT- 65
Query: 73 KTTKRSIPMLFVRGDGVILVSPPNRTP 99
+ G+ ++++ P R P
Sbjct: 66 ----------LLNGNNIVMLIPGGRGP 82
>gi|358058374|dbj|GAA95893.1| hypothetical protein E5Q_02551 [Mixia osmundae IAM 14324]
Length = 197
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
D+R+ VK R + G L DQ +NMVL DV+E V D +T + RS+ +
Sbjct: 114 DQRIRVKFLGGREVTGVLKGSDQLMNMVLDDVQELVR----DPDTLAPLDPAQYRSLGLT 169
Query: 83 FVRGDGVILVSP 94
+RG +++++P
Sbjct: 170 VIRGTAIVVINP 181
>gi|304323319|gb|ADM24796.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323321|gb|ADM24797.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323331|gb|ADM24802.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323333|gb|ADM24803.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323339|gb|ADM24806.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+++ VK R + G L YDQ LN+V+ D+EET+ D +T RS+ +
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETLR----DPDTGLPSIPPATRSLGL 57
Query: 82 LFVRGDGVILVSP 94
+RG ++++SP
Sbjct: 58 AVLRGTSLVVLSP 70
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV 58
+E+ +I T PL +++ S+ ++ + +RN R L ++ A+D+H NMVL +V+E
Sbjct: 20 LEEHEIAT----GPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVNVKEMW 75
Query: 59 TTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92
T + + + + K R I +F+RGD VILV
Sbjct: 76 TELP-KGKNKKPVNKD--RFISKMFLRGDSVILV 106
>gi|55377641|ref|YP_135491.1| snRNP-like protein [Haloarcula marismortui ATCC 43049]
gi|448633752|ref|ZP_21674251.1| snRNP-like protein [Haloarcula vallismortis ATCC 29715]
gi|448639871|ref|ZP_21677019.1| snRNP-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|448659277|ref|ZP_21683245.1| snRNP-like protein [Haloarcula californiae ATCC 33799]
gi|448677873|ref|ZP_21689063.1| snRNP-like protein [Haloarcula argentinensis DSM 12282]
gi|55230366|gb|AAV45785.1| snRNP-like protein [Haloarcula marismortui ATCC 43049]
gi|445750443|gb|EMA01881.1| snRNP-like protein [Haloarcula vallismortis ATCC 29715]
gi|445760779|gb|EMA12036.1| snRNP-like protein [Haloarcula californiae ATCC 33799]
gi|445762398|gb|EMA13619.1| snRNP-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445773548|gb|EMA24581.1| snRNP-like protein [Haloarcula argentinensis DSM 12282]
Length = 60
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV 58
PLD++ SL E V V+++ + G+L YDQH+N+V+ D + T+
Sbjct: 5 PLDVLEASLGETVTVQLKGGELFEGELTGYDQHMNLVVEDEDTTI 49
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 14 PLDLIRLS--LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ + +V + RN R L ++ A+D+H NMVL +V+E T ++ +
Sbjct: 55 PLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT----EKPKGGKG 110
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 111 KGVNKDRFISKMFLRGDSVILV 132
>gi|304323323|gb|ADM24798.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323325|gb|ADM24799.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323327|gb|ADM24800.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323329|gb|ADM24801.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323335|gb|ADM24804.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323337|gb|ADM24805.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323341|gb|ADM24807.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+++ VK R + G L YDQ LN+V+ D+EET+ D +T RS+ +
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETLR----DPDTGLPSIPPATRSLGL 57
Query: 82 LFVRGDGVILVSP 94
+RG ++++SP
Sbjct: 58 AVLRGTSLVVLSP 70
>gi|346977239|gb|EGY20691.1| hypothetical protein VDAG_10320 [Verticillium dahliae VdLs.17]
Length = 140
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YD +N+VL DVEE + E E T
Sbjct: 54 LDLGKY-MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENT------- 105
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ RG ++LVSP
Sbjct: 106 --RSLGLVVARGTLLVLVSP 123
>gi|302419873|ref|XP_003007767.1| RH73529p [Verticillium albo-atrum VaMs.102]
gi|261353418|gb|EEY15846.1| RH73529p [Verticillium albo-atrum VaMs.102]
Length = 141
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YD +N+VL DVEE + E E T
Sbjct: 55 LDLGKY-MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENT------- 106
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ ++ RG ++LVSP
Sbjct: 107 --RSLGLVVARGTLLVLVSP 124
>gi|392563452|gb|EIW56631.1| U6 snRNA-associated Sm-like protein LSm7 [Trametes versicolor
FP-101664 SS1]
Length = 94
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + ++ER+ VK R + G L YDQ LN+VL +V+E + T + ++
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPD---------GES 59
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T R++ ++ +RG + L+SP
Sbjct: 60 TTRNLGLVVLRGPTITLLSP 79
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G+ A+D+H NM L +V+E T V + ++
Sbjct: 19 PLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKF 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I F+RGD VI+V
Sbjct: 79 KPVNKDRYISKKFLRGDSVIVV 100
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + RN R L ++ A+D+H NMVL +V+E T +
Sbjct: 35 PLSILQTAVRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLAGGKKGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL LI S+ R V + +RN + ++ A+D+H NMVL +V+E T E +
Sbjct: 34 PLSLINDSVLTRRPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT------EKKGKS 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R I LF+RGD VI+V
Sbjct: 88 LVNRERFISKLFLRGDSVIVV 108
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ ++ + +RN R L ++ A+D+H NMVL +V+E T ET
Sbjct: 40 PLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWT------ETPSGK 93
Query: 72 YK---TTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 94 NKKPVNKDRFISKMFLRGDSVILV 117
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL E + E + K
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|116191555|ref|XP_001221590.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88181408|gb|EAQ88876.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 117
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAY 43
+V EPLDL+RL LDE V VK+R +R L+G+LH +
Sbjct: 10 AVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHNH 43
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ ++ +V + RN R L ++ A+D+H NMVL +V+E T
Sbjct: 35 PLSLLQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKLANGKPGR 94
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 95 PVNKDRFISKMFLRGDSVILV 115
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN + L ++ A+D+H NMVL +V+E T ET +
Sbjct: 28 PLSVLQQAVRNQSQVLISLRNNKKLLARVKAFDRHANMVLENVKEMWT------ETPKGK 81
Query: 72 YKTT---KRSIPMLFVRGDGVIL 91
K T R I LF+RGD VIL
Sbjct: 82 GKKTINKDRFISKLFLRGDSVIL 104
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ R L GK A+D+H+N+VLGD EE + + + +R++ +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDREDRRTLGL 72
Query: 82 LFVRGDGVILVS---PP 95
+ +RG+ VI ++ PP
Sbjct: 73 VLLRGEEVISMAVEGPP 89
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ +R G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDV------TEFD-------YT 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ V ++ P P
Sbjct: 54 AAQTKLPKILLNGNNVCMLIPGGEGP 79
>gi|403169358|ref|XP_003328805.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167924|gb|EFP84386.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 125
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + + D+RV VK R + G L YDQ LN+V+ +VEE + E + T KT
Sbjct: 36 LDLAKFA-DKRVRVKFMGGREITGILKGYDQLLNLVMDEVEEILR--EPEGATVTSPPKT 92
Query: 75 TKRSIPMLFVRGDGVILVSP 94
RS+ + +RG +++++P
Sbjct: 93 --RSLGLAVIRGTSLVVINP 110
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+++R GKL +D +NMVL DV E ET + K
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTEY--------ETTPQGKK 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
TT+ + +L G+ + ++ P + P
Sbjct: 59 TTQLAQTLL--NGNNICMLIPGSVGP 82
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL + E + E + K
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELL--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|384247364|gb|EIE20851.1| U6 snRNA-associated Sm-like protein LSm7 [Coccomyxa subellipsoidea
C-169]
Length = 99
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 ISVKE-PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+S KE LDL + +D+ V VK+ R + G L YDQ LN+VL +ETV + E+
Sbjct: 1 MSRKENALDLAKF-IDKGVRVKLSGGREVEGTLKGYDQLLNLVL---DETVEYLRDKEDM 56
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL 101
+T R + ++ RG V++VSP T L
Sbjct: 57 LRTTNET--RHLGLVVCRGTAVMMVSPTAGTEEL 88
>gi|357622892|gb|EHJ74252.1| small nuclear ribonucleoprotein polypeptide [Danaus plexippus]
Length = 180
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ RV V +++ R G A+D+H+N++LGD EE +I + + + + KR++
Sbjct: 5 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTVDREEKRTLGF 61
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 62 VLLRGENIV 70
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 28 VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGD 87
+ +RN+ L K+ A+D+H NMVL +V+E T + + T +R + +F+RGD
Sbjct: 61 ISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDINNGTKV------TRERFVSKMFLRGD 114
Query: 88 GVILV 92
V+++
Sbjct: 115 SVVVI 119
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ L++ +++ + + RN L K+ A+D+H N+VL +V+E T + ++I
Sbjct: 29 PMSLLQNAVNNNTPIVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTET-VKNNKGKKI 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
T K R + +F+RGD VI++
Sbjct: 88 KSTPKERFVSKMFLRGDSVIII 109
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVT-TVEIDEETYEEIYKTTKRSIP 80
++ R+ V +++ R L G A+D+H+N+VLGD EE T ++ EE + KR +
Sbjct: 13 INYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKLKTNVSEE--RVEKRYLG 70
Query: 81 MLFVRGDGVI 90
++ +RG+ V+
Sbjct: 71 LVLLRGESVV 80
>gi|336121236|ref|YP_004576011.1| Like-Sm ribonucleoprotein core [Methanothermococcus okinawensis
IH1]
gi|334855757|gb|AEH06233.1| Like-Sm ribonucleoprotein core [Methanothermococcus okinawensis
IH1]
Length = 71
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
I + PLD + S++ V V +++ +++GKL AYD HLN+ L + E DE+ Y
Sbjct: 2 IDTQRPLDALGKSINTNVVVHLKDGNIVKGKLKAYDLHLNVALESAK-----FENDEKEY 56
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
+ ++ +RGD ++ +S
Sbjct: 57 Q-----------VIVIRGDNILFIS 70
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + +
Sbjct: 7 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMI--------QDGEVVKR 58
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 59 YGK-----IVIRGDNVLAISP 74
>gi|378730773|gb|EHY57232.1| small nuclear ribonucleoprotein [Exophiala dermatitidis NIH/UT8656]
Length = 138
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YDQ +N+VL DV+ET+ E +E
Sbjct: 52 LDLGKY-VDKQITVKFNGGREIVGTLKGYDQLMNLVLDDVKETMRDDEGNE--------- 101
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T R + ++ RG ++L+SP
Sbjct: 102 TTRPLGLVVARGTLLVLISP 121
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN L ++ A+D+H NM+L +V+E T + + +
Sbjct: 24 PLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGQKAS 83
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 84 RPVNKDRFVSKMFLRGDSVIMV 105
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + +
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMI--------QDGEVVKR 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ R+ + +++ R G++ A+D+H+N+VL + EE +I +T + + KRS+ +
Sbjct: 12 LNHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEE---FRKIRPKTKSQQEREEKRSLGL 68
Query: 82 LFVRGDGVILVS 93
+ +RG+ +I +S
Sbjct: 69 VILRGETIISLS 80
>gi|168012739|ref|XP_001759059.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689758|gb|EDQ76128.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 102
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D V VK+ R + G L YDQ LN+VL + E + + +T +++
Sbjct: 9 LDLAKF-VDRGVSVKLSGGRQVTGTLKGYDQLLNLVLDEATENLRDSDDPLKTTDQM--- 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG V+LV+P + T
Sbjct: 65 --RQLGLIVCRGTAVMLVAPTDGT 86
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + R I +F+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK---PKGGKGKGVNKDRFISKMFL 103
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 104 RGDSVILV 111
>gi|345005070|ref|YP_004807923.1| Sm ribonucleoprotein-like protein [halophilic archaeon DL31]
gi|344320696|gb|AEN05550.1| Like-Sm ribonucleoprotein core [halophilic archaeon DL31]
Length = 79
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL-GDVEETVTTVEIDEETYEEIY 72
PLD++ SL+E V V +++ G L YDQH+N+VL T E+D+ EE+
Sbjct: 5 PLDVLEESLEEPVTVHLKDGDAFYGTLSGYDQHMNVVLEAADATDATDAELDQLDVEEVD 64
Query: 73 KTTKRSIPMLFVRGDGVILVS 93
TT +RGD VI ++
Sbjct: 65 NTT-------IIRGDNVISIT 78
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL LI + R++V M+ ++ G L +D+++NMVL DV+E + DEE K
Sbjct: 23 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE--YGFKADEEDMSGGNK 80
Query: 74 TTKR----SIPMLFVRGDGVILVSP 94
KR + + + G+ V ++ P
Sbjct: 81 KLKRVMVNRLETILLSGNNVAMLVP 105
>gi|302499670|ref|XP_003011830.1| U6 snRNP-associated protein Lsm7 [Arthroderma benhamiae CBS 112371]
gi|291175384|gb|EFE31190.1| U6 snRNP-associated protein Lsm7 [Arthroderma benhamiae CBS 112371]
Length = 223
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 15/96 (15%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV--TTVEIDEETYEEIY 72
LDL + +D+ V+VK R + G L YDQ +N+VL DV+ET+ TV +D + + +
Sbjct: 114 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETMRGKTVHLDFKEVDGLN 172
Query: 73 ------------KTTKRSIPMLFVRGDGVILVSPPN 96
T RS+ ++ RG ++L+SP +
Sbjct: 173 MFADWLGVDDNDNVTTRSLGLIVARGTLLVLLSPAD 208
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ + M+N++ G L +D ++NMVL DV E D Y
Sbjct: 53 PLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDV------TEFD-------YT 99
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ + ++ P P
Sbjct: 100 GAQVKLPKILLNGNNICMLIPGGEGP 125
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R + ++ A+D+H+NMVL +V+E T +
Sbjct: 36 PLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK 95
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 96 PVNKDRFISKMFLRGDSVILV 116
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V +++ R L GK A+D+H+N+VLGD EE + + ++T E+ + +R++
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKTKED--REERRTL 70
Query: 80 PMLFVRGDGVI 90
++ +RG+ VI
Sbjct: 71 GLVLLRGEEVI 81
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
M DE +P + PL++I S+ +RV V M ++ GKL +D ++NMVL DV E
Sbjct: 43 MSDETVPQTVL--PLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTE 96
>gi|453087944|gb|EMF15985.1| U6 snRNA-associated Sm-like protein LSm7 [Mycosphaerella populorum
SO2202]
Length = 134
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + L++ + VK R + G L +DQ +N+VL +V+ET T +E T
Sbjct: 46 LDLSKY-LEKGITVKFNGGREVTGTLKGFDQLMNLVLDNVKET---------TRDEEGNT 95
Query: 75 TKRSIPMLFVRGDGVILVSP 94
+ R++ +L RG ++L+SP
Sbjct: 96 STRNLGLLVARGTLLVLISP 115
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI-DEETYEE 70
PL L++ ++ +V + +R+ R L ++ A+D+H NM+L +V+E T + + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 94 VNK--DRFISKMFLRGDSVILV 113
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R + ++ A+D+H+NMVL +V+E T +
Sbjct: 36 PLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK 95
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 96 PVNKDRFISKMFLRGDSVILV 116
>gi|326426796|gb|EGD72366.1| U6 snRNA-associated Sm-like protein LSm5 [Salpingoeca sp. ATCC
50818]
Length = 87
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
PL+LI + R+HV M++++ L G L +D+ +NMVL DV E
Sbjct: 6 PLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTE 48
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI S+ +V V +RN + ++ A+D+H NMVL +V+E T E+ ++I
Sbjct: 30 PMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT-----EKKGKQI 84
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R I LF+RGD +I++
Sbjct: 85 I-NRERFISKLFLRGDSIIVI 104
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+R D VI+V
Sbjct: 88 KPVNKDRYISKMFLRRDSVIVV 109
>gi|356512406|ref|XP_003524910.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine
max]
Length = 99
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL +E V + ++ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTDQT 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R++ ++ RG V+LVSP + T
Sbjct: 65 --RNLGLIVCRGTAVMLVSPTDGT 86
>gi|403416516|emb|CCM03216.1| predicted protein [Fibroporia radiculosa]
Length = 110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + + +ER+ VK R + G L +DQ LN+VL +VEE E + T I T
Sbjct: 10 LDLSKYA-NERIRVKFTGGREVTGILKGFDQLLNLVLDEVEEQFQNGEDSKFTIGLISST 68
Query: 75 T-------KRSIPMLFVRGDGVILVSP 94
RS+ ++ +RG + L+SP
Sbjct: 69 NFAEAQLQTRSLGLVVLRGPTITLLSP 95
>gi|345567932|gb|EGX50834.1| hypothetical protein AOL_s00054g920 [Arthrobotrys oligospora ATCC
24927]
Length = 215
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT---TKRS 78
++ R+ V + + R L G L A+D+H+N+VL D EE T ++ T KR+
Sbjct: 12 INYRMRVTLNDSRQLTGTLLAFDKHMNVVLADTEEFRRTKRKATKSNPNAPTTEVEEKRT 71
Query: 79 IPMLFVRGDGVILVS---PPNRTPA 100
+ ++ +RG ++ +S PP TPA
Sbjct: 72 LGLIILRGMTIVSLSVEGPPTETPA 96
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R + ++ A+D+H+NMVL +V+E T +
Sbjct: 36 PLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK 95
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 96 PVNKDRFISKMFLRGDSVILV 116
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLIPGGEG 88
>gi|448122802|ref|XP_004204535.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|448125081|ref|XP_004205093.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358249726|emb|CCE72792.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358350074|emb|CCE73353.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 16/83 (19%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT--------TK 76
R+ V + R G+ A+D+H+N+VL D EE+ I +++Y+E+ +T K
Sbjct: 8 RLRVNTIDNRDFVGQFLAFDKHMNLVLSDTEES----RITKKSYQELKRTHNTNSIVEEK 63
Query: 77 RSIPMLFVRGDGVILVS----PP 95
RS+ ++ +RG+ ++ +S PP
Sbjct: 64 RSLGLVILRGEQIVNISIESAPP 86
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+ E+ G L +D ++NMVL DV E Y
Sbjct: 7 PLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFSD------------YT 54
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTPA 100
+P + + G+ + ++ P P
Sbjct: 55 GNHTKLPKILLNGNNICMLIPGGEGPG 81
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ + ++ + RN L ++ A+D+H NMVL +V+E T + +
Sbjct: 28 PLSVLQQSVKNNNQILISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKGSKAK 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R + +F+RGD V+LV
Sbjct: 88 PVNKDRFVSKMFLRGDTVVLV 108
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL LI + R++V M+ ++ G L +D+++NMVL DV+E + DEE K
Sbjct: 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE--YGFKADEEDISGGNK 86
Query: 74 TTKR----SIPMLFVRGDGVILVSP 94
KR + + + G+ V ++ P
Sbjct: 87 KLKRVMVNRLETILLSGNNVAMLVP 111
>gi|156031032|ref|XP_001584841.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980]
gi|154700515|gb|EDO00254.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 138
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D++V VK R ++G L YD +N+VL DVEE +T E +E
Sbjct: 53 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLTDDEGNE--------- 102
Query: 75 TKRSIPMLFVRGDGVILVSP 94
R++ ++ RG +I +SP
Sbjct: 103 AWRALGLVVARGTLLIGISP 122
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+ ++ G L +D ++NMVL DV +E D Y
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKDFAGTLLGFDDYVNMVLEDV------IEFD-------YT 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ + ++ P P
Sbjct: 54 GAQTKLPKILLNGNNICMLIPGGEGP 79
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKT-TKRS 78
L R+ V + + R L G++ AYD+H+N VL + EE TV + + E T KR+
Sbjct: 5 LHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRT 64
Query: 79 IPMLFVRGDGVILVS 93
+ ++ +RG+ ++ VS
Sbjct: 65 LGLVILRGETIVSVS 79
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L RV V + + R G +YD+H+N+VL D EE V+ E ++EI KR + +
Sbjct: 11 LQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEE-FRRVKNKENNFKEI----KRVVGL 65
Query: 82 LFVRGDGVI 90
+ +RGD ++
Sbjct: 66 ILIRGDNIV 74
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P S PL+L+ ++ R+H+ M+ ++ + G L +D +NMVL DV E +T E
Sbjct: 8 PNPSTILPLELVDKAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQRV 67
Query: 67 TYEEIYKTTKRSIPMLFVRGDG 88
+ + +I ML G+G
Sbjct: 68 SKLDQILLNGNNITMLVPGGEG 89
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI S+ R V + +RN + ++ A+D+H NMVL +V+E T + ++ +E
Sbjct: 29 PMSLIDESMVLRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGNKTINKE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD +I++
Sbjct: 88 -----RFISKLFLRGDSIIVI 103
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL LI S+ + V + +RN + ++ A+D+H NM+L +V+E T + +E
Sbjct: 30 PLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWTEKKGKRVVNKE- 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI++
Sbjct: 89 -----RFISKLFLRGDSVIVI 104
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+ ++V VK+R+ +RG L ++DQH+N++L D EE ID + KR
Sbjct: 19 SIGKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEI-----IDGNVF-------KRG-- 64
Query: 81 MLFVRGDGVILVSP 94
+ VRG+ V+ +SP
Sbjct: 65 TIVVRGENVLFISP 78
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
PL+LI + R+ V M+NER G L +D +NMVL DV E
Sbjct: 7 PLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTE 49
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
++ ++V VK+R+ +RG L ++DQH+N++L D EE ID Y+
Sbjct: 19 AIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEI-----IDGNVYKR---------G 64
Query: 81 MLFVRGDGVILVSP 94
+ +RG+ V+ +SP
Sbjct: 65 TIVIRGENVLFISP 78
>gi|351720779|ref|NP_001235908.1| uncharacterized protein LOC100306498 [Glycine max]
gi|255628715|gb|ACU14702.1| unknown [Glycine max]
Length = 99
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL +E V + ++ + +T
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL---DEAVEFLRDPDDPLKTTDQT 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R++ ++ RG V+LVSP + T
Sbjct: 65 --RNLGLIVCRGTAVMLVSPTDGT 86
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NMVL DV E T E T +
Sbjct: 13 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 72
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 73 LNGNNITMLIPGGEG 87
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
PL+LI + R+H+ M+N++ L G L +D ++NMVL DV E
Sbjct: 6 PLELIDKCIGSRIHIIMKNDKELVGTLLGFDDYVNMVLEDVTE 48
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 28 VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGD 87
+ +RN+ L K+ A+D+H NMVL +V+E T + + T +R + +F+RGD
Sbjct: 45 ISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDINNGTKV------TRERFVSKMFLRGD 98
Query: 88 GVILV 92
V+++
Sbjct: 99 SVVVI 103
>gi|224059650|ref|XP_002299952.1| predicted protein [Populus trichocarpa]
gi|224104033|ref|XP_002313290.1| predicted protein [Populus trichocarpa]
gi|118483640|gb|ABK93714.1| unknown [Populus trichocarpa]
gi|222847210|gb|EEE84757.1| predicted protein [Populus trichocarpa]
gi|222849698|gb|EEE87245.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E + + +T ++
Sbjct: 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT--- 64
Query: 75 TKRSIPMLFVRGDGVILVSPPNRT 98
R + ++ RG V+LVSP + T
Sbjct: 65 --RRLGLIVCRGTAVMLVSPTDGT 86
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLIPGGEG 88
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 1 MEDEQIPTISVKE----PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54
M++ QI + E PL++++ S+ ++ V +RN L ++ A+D+H NMVL +V
Sbjct: 12 MDEAQIRALEEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLENV 71
Query: 55 EETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92
+E T + + + + K R I LF+RGD VI+V
Sbjct: 72 KEMWTEIP-KGKNKKPVNKD--RFISKLFLRGDSVIMV 106
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE 66
P S PL+L+ ++ R+H+ M+ ++ + G L +D +NMVL DV E +T E
Sbjct: 8 PNPSTILPLELVDRAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQRV 67
Query: 67 TYEEIYKTTKRSIPMLFVRGDG 88
+ + +I ML G+G
Sbjct: 68 SKLDQILLNGNNITMLVPGGEG 89
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI ++ R V + +RN L ++ A+D+H N+VL +V+E T + + E
Sbjct: 30 PMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTEKKNKQTINRE- 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD VI++
Sbjct: 89 -----RFISKLFLRGDSVIVI 104
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V ++ ++
Sbjct: 49 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKS 108
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K I +F+ GD VI+V
Sbjct: 109 KPINKGHYISKMFLSGDSVIVV 130
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETV--TTVEIDEETYE 69
PL +++ ++ +V + +RN R L ++ A+D+H NMVL +V+E T D +
Sbjct: 38 PLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPRLADGKKGR 97
Query: 70 EIYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VILV
Sbjct: 98 PVNKD--RFISKMFLRGDSVILV 118
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ +R G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDV------TEFD-------YT 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ V ++ P P
Sbjct: 54 GAQTKLPKILLNGNNVCMLIPGGEGP 79
>gi|157119614|ref|XP_001659450.1| Sm protein G, putative [Aedes aegypti]
gi|108875262|gb|EAT39487.1| AAEL008719-PA [Aedes aegypti]
Length = 76
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+R+ +K+ RV+ G L +D +N+VL +E+ EE +T+ +I M
Sbjct: 13 MDKRLSLKLNGGRVVSGILRGFDPFMNVVL-------------DESIEECKDSTRNNIGM 59
Query: 82 LFVRGDGVILVSPPNR 97
+ +RG+ +I+V +R
Sbjct: 60 VVIRGNSIIMVEALDR 75
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+ E+ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDV------TEFD-------YT 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTPA 100
+P + + G+ + ++ P P
Sbjct: 54 GNHTKLPKILLNGNNICMLIPGGEGPG 80
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N+R G L +D +NMVL DV E TT + ++T
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKT------ 60
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
++ + G+ + ++ P + P
Sbjct: 61 ----TLNQTLLNGNNICMLIPGSSGP 82
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN L ++ A+D+H NM+L +V+E T + + +
Sbjct: 24 PLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGSKGS 83
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R + +F+RGD VI+V
Sbjct: 84 RPVNKDRFVSKMFLRGDSVIMV 105
>gi|58260056|ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116264|ref|XP_773086.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255707|gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229488|gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 195
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKT-TKRS 78
L R+ V + + R L G++ AYD+H+N VL + EE TV + + E T KR+
Sbjct: 5 LHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKAKASSNEPAPTTQQKRT 64
Query: 79 IPMLFVRGDGVILVS 93
+ ++ +RG+ ++ VS
Sbjct: 65 LGLVILRGETIVSVS 79
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 19/88 (21%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ + +V + RN R L ++ A+D+H NMVL +V +E + E
Sbjct: 35 PLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENV----------KEMWTEK 84
Query: 72 YKTTK-------RSIPMLFVRGDGVILV 92
K +K R I +F+RGD VILV
Sbjct: 85 PKGSKGKGVNKDRFISKMFLRGDSVILV 112
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
P S PL+L+ ++ R+H+ M+N++ + G L +D +NMVL DV E +T E
Sbjct: 8 PNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 63
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
P S PL+L+ ++ R+H+ M+N++ + G L +D +NMVL DV E +T E
Sbjct: 8 PNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 63
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +RN R + ++ A+D+H+NMVL +V+E T +
Sbjct: 25 PLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK 84
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 85 PVNKDRFISKMFLRGDSVILV 105
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPML 82
+ +V + +RN R + ++ A+D+H+NMVL +V E T V + +R +
Sbjct: 28 NTQVLIALRNNRKILARVRAFDRHMNMVLENVLEMWTEVPRGSHGQKSKPMRKERYHSKM 87
Query: 83 FVRGDGVILV 92
F+RGD VI V
Sbjct: 88 FLRGDSVIFV 97
>gi|380491285|emb|CCF35428.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 144
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YD +N+VL +V+E + DEE E
Sbjct: 58 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMR----DEEGNE----- 107
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++LVSP
Sbjct: 108 TTRSLGLVVARGTLLVLVSP 127
>gi|226530574|ref|NP_001148733.1| LSM7-like [Zea mays]
gi|195621704|gb|ACG32682.1| LSM7-like [Zea mays]
gi|413919649|gb|AFW59581.1| LSM7-like protein [Zea mays]
Length = 156
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + VE + E + + +
Sbjct: 67 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA------VENEREQDDPLKLS 119
Query: 75 TK-RSIPMLFVRGDGVILVSPPNRT 98
K R + ++ RG V+LVSP + T
Sbjct: 120 GKTRQLGLIVCRGTAVMLVSPTDGT 144
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ +V + RN + L G++ A+ +H NMVL +V+E T V + +
Sbjct: 28 PLSVLTQSVKNSTQVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEVPKSSKGKKSK 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+ R + +F+RGD V +V
Sbjct: 88 PVSKDRRVSKMFLRGDSVTVV 108
>gi|452845630|gb|EME47563.1| hypothetical protein DOTSEDRAFT_69495 [Dothistroma septosporum
NZE10]
Length = 133
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ + VK R + G L YDQ +N+VL +V+E T ++ T
Sbjct: 45 LDLAKY-MDKEISVKFNGGREVTGTLKGYDQLMNLVLDNVKEL---------TRDDEGNT 94
Query: 75 TKRSIPMLFVRGDGVILVSP 94
+ R++ +L RG ++L+SP
Sbjct: 95 STRNLGLLVARGTLLVLISP 114
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-----TVTTVEIDEETYEEIYKTTK 76
++ R+ V +++ R L GK A+D+H+N+VLGD EE +I+EE + +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEE------REDR 66
Query: 77 RSIPMLFVRGDGVI 90
R++ ++ +RG+ VI
Sbjct: 67 RTLGLVLLRGEEVI 80
>gi|359417782|ref|ZP_09209851.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
gi|358031875|gb|EHK00710.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
Length = 78
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 12 KEPLDLIRLSLDERVHVKMR----NERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
+ P D++ S D V VK++ N+ + G+L A+D+HLN+ L E E +
Sbjct: 5 RRPFDVLDSSKDGNVLVKLKGYSGNDVTVSGELQAFDKHLNIWL---ENARVNTEDGQTD 61
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
Y + LF+RGD V+ VSP
Sbjct: 62 YGK-----------LFLRGDNVLFVSP 77
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE-----TVTTVEIDEETYEEIYKTTK 76
++ R+ V +++ R L GK A+D+H+N+VLGD EE +I+EE + +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEE------REDR 66
Query: 77 RSIPMLFVRGDGVI 90
R++ ++ +RG+ VI
Sbjct: 67 RTLGLVLLRGEEVI 80
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ RV V +++ R G A+D+H+N++LGD EE + +T + + KR++
Sbjct: 13 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|406861450|gb|EKD14504.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 133
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YD +N+VL DV+E + D+E T
Sbjct: 48 LDLGKY-MDKKITVKFTGGREVTGTLKGYDALMNLVLDDVDEVLR----DDEG-----NT 97
Query: 75 TKRSIPMLFVRGDGVILVSP 94
+ RS+ ++ RG ++LVSP
Sbjct: 98 SSRSLGLVVARGTLLVLVSP 117
>gi|389608761|dbj|BAM17992.1| small ribonucleoprotein particle protein SmB [Papilio xuthus]
Length = 188
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ RV V +++ R G A+D+H+N++LGD EE + +T + + KR++
Sbjct: 13 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDERVHV--KMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI ++ +V V +RN + ++ A+D+H NMVL +V+E T + + E
Sbjct: 29 PMSLINDAMVSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKQNKKTVNRE- 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I LF+RGD +I+V
Sbjct: 88 -----RFISKLFLRGDSIIIV 103
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + R + +F+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK---PKGGKGKGVNKDRFVSKMFL 103
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 104 RGDSVILV 111
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + R + +F+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK---PKGGKGKGVNKDRFVSKMFL 103
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 104 RGDSVILV 111
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ + +V + RN R L ++ A+D+H NMVL +V+E T + +
Sbjct: 37 PLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE---KPKGAKGK 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 GVNKDRFISKMFLRGDSVILV 114
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E+ T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E+ T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|310794009|gb|EFQ29470.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 143
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+++ VK R + G L YD +N+VL +V+E + DEE E
Sbjct: 57 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMR----DEEGNE----- 106
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++LVSP
Sbjct: 107 TTRSLGLVVARGTLLVLVSP 126
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E+ T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT--KRSIPML 82
R+ V + + R L G++ A+D+H+N+VL D EE + + +E + KRS+ ++
Sbjct: 8 RIRVTLNDNRQLVGQMLAFDRHMNLVLADCEEFRRVKQKKKSADDEAVPSQELKRSLGLV 67
Query: 83 FVRGDGVILVS 93
+RG+ ++ +S
Sbjct: 68 ILRGEMIVSLS 78
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + R + +F+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK---PKGGKGKGVNKDRFVSKMFL 103
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 104 RGDSVILV 111
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + + R + +F+
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEK---PKGGKGKGVNKDRFVSKMFL 103
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 104 RGDSVILV 111
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T++ +P+D+++ +L V + ++ R G L YD ++N+VL + E +
Sbjct: 4 TVANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING------- 56
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
K + VRGD VI VSP
Sbjct: 57 ------ENKGVFDRILVRGDNVIFVSP 77
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ ++ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDV------TEFD-------YT 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTPA 100
+ +P + + G+ V ++ P P+
Sbjct: 54 GAQTKLPKILLNGNNVCMLIPGGEGPS 80
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK--------- 76
+ RN + L G++ +D+H NMVL +V E T V + + + KT K
Sbjct: 88 CSINCRNNKKLLGRVRTFDRHCNMVLENVREMWTEV-YNYTLFIWVPKTGKGKKKAQPVN 146
Query: 77 --RSIPMLFVRGDGVILV 92
R I +F+RGD VI+V
Sbjct: 147 KDRFISKMFLRGDSVIIV 164
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 26 VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVR 85
V + +RN R L G + A+D+H+N++L +V E TT Y E R I + +R
Sbjct: 22 VIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKNIFYHE------RYIAKMILR 75
Query: 86 GDGVILV 92
GD ++L+
Sbjct: 76 GDSIVLL 82
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLF 83
+V + RN R L ++ A+D+H NMVL +V+E T ++ + K R + +F
Sbjct: 47 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT----EKPKGGKGKGVNKDRFVSKMF 102
Query: 84 VRGDGVILV 92
+RGD VILV
Sbjct: 103 LRGDSVILV 111
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T V + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWTEVP-KGKNKKPVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD V+LV
Sbjct: 99 RGDSVVLV 106
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V + + R L G++ A+D+H+N+VL D EE V + ET + KR++
Sbjct: 15 INWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRAL 74
Query: 80 PMLFVRGDGVILVS 93
++ +RG+ V+ +S
Sbjct: 75 GLVILRGETVVSLS 88
>gi|301098772|ref|XP_002898478.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104903|gb|EEY62955.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 106
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 10 SVKEP-LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
S K+P LDL + +D+ V VK R + G L YDQ +N+VL D VE +
Sbjct: 11 SRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDC------VEFLRDPS 63
Query: 69 EEIYKTTK--RSIPMLFVRGDGVILVSPPNRT 98
+E Y+ T R + ++ RG V+LVSP + T
Sbjct: 64 DE-YRITDETRKVGLVVCRGTSVMLVSPVDGT 94
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI-DEETYEEIYKTTKRSIP 80
++ R+ V +++ R L GK A+D+H+N+VLGD EE ++T EE + +R++
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE--RDERRTLG 70
Query: 81 MLFVRGDGVI 90
++ +RG+ VI
Sbjct: 71 LVLLRGEEVI 80
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T V + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP-KGKNKKPVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 99 RGDSVILV 106
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
IS PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E T + T
Sbjct: 9 NISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRVT 68
Query: 68 YEEIYKTTKRSIPMLFVRGD 87
+ +I ML GD
Sbjct: 69 KLDQILLNGNNITMLVPGGD 88
>gi|297618799|ref|YP_003706904.1| small nuclear riboprotein-like protein [Methanococcus voltae A3]
gi|297377776|gb|ADI35931.1| Like-Sm ribonucleoprotein core [Methanococcus voltae A3]
Length = 69
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 18/85 (21%)
Query: 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
+ + PLD + S++ + V +++ + ++G+L AYD H+N V ++ +
Sbjct: 2 MDTQRPLDALGKSINTNITVFLKDGKEIKGRLKAYDLHMN------------VALENAKF 49
Query: 69 EEIYKTTKRSIPMLFVRGDGVILVS 93
EE + PM+ VRGD V+ VS
Sbjct: 50 EE------KEYPMIVVRGDNVLYVS 68
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
PL+L+ + R+H+ MRN++ + G L +D+ +NMVL DV E
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET----VTTVE-----IDEETYEEIYK-- 73
+V + +RN + L ++ A+D+H NMVL +V+E TT++ ++ + + E K
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEERPSPFTTIQEPRLMVNSQMWTETPKGK 101
Query: 74 -----TTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 102 NKKPVNKDRFISKMFLRGDSVILV 125
>gi|241959080|ref|XP_002422259.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
gi|223645604|emb|CAX40263.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
Length = 125
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT------ 75
++ R+ + + R G L ++D+H+N+VL D EE+ I +++Y ++ K T
Sbjct: 20 INFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEES----RITKKSYSQLKKHTPNVEPV 75
Query: 76 --KRSIPMLFVRGDGVILVSPPNRTP 99
KR++ ++ +RGD V+ + + P
Sbjct: 76 YEKRNLGLIILRGDQVVSFTIESNAP 101
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI-DEETYEE 70
PL L++ ++ +V + +R+ R L ++ A+D+H NM+L +V+E T + + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VI+V
Sbjct: 94 VNK--DRFISKMFLRGDSVIIV 113
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V ++ ++
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKS 77
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K I +F+ GD VI+V
Sbjct: 78 KPINKGHYISKMFLSGDSVIVV 99
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T V + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP-KGKNKKPVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD VIL+
Sbjct: 99 RGDSVILI 106
>gi|440801773|gb|ELR22778.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 135
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ V +++ R L G L ++DQ+ N+VL E+T+ + + E+ E +++ +
Sbjct: 25 VDHRILVVLQDGRKLLGVLRSFDQYANLVL---EQTIERIYVGEQYAE-------KNLGL 74
Query: 82 LFVRGDGVILVSP 94
VRGD ++L+ P
Sbjct: 75 FLVRGDNIVLLGP 87
>gi|225680898|gb|EEH19182.1| hypothetical protein PABG_01501 [Paracoccidioides brasiliensis
Pb03]
Length = 221
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 19 RLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--------TVTTVEIDEETYEE 70
++ ++ R+ V + + R + G++ A+D+H+N+VL D EE T TT T
Sbjct: 4 QIQINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKTTQAPGSSTPSL 63
Query: 71 IYKTTKRSIPMLFVRGDGVILVS---PPNRTPA 100
+ KR++ + VRG V+ S PP PA
Sbjct: 64 VEVEEKRTLGLTIVRGTHVVSCSVDGPPPADPA 96
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL + E+ K
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDG---------EVVK 55
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + + VRGD V+ +SP
Sbjct: 56 SYGK----IVVRGDNVLAISP 72
>gi|226467448|emb|CAX69600.1| U6 snRNA-associated Sm-like protein LSm5 [Schistosoma japonicum]
Length = 87
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D ++NMVL DV E T + T
Sbjct: 10 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTEFEFTAQGKRITKLSHIL 69
Query: 74 TTKRSIPMLFVRGDG 88
+I M+ G+G
Sbjct: 70 LNGSNIAMMVPGGEG 84
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T++ +P+D+++ +L V + ++ R G L YD ++N+VL + E +
Sbjct: 8 TVANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING------- 60
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
K + VRGD VI VSP
Sbjct: 61 ------ENKGVFDRILVRGDNVIFVSP 81
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E TT E T +
Sbjct: 13 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPEGRRITRLDQIL 72
Query: 74 TTKRSIPMLFVRGD 87
+I ML GD
Sbjct: 73 LNGNNITMLVPGGD 86
>gi|189205535|ref|XP_001939102.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975195|gb|EDU41821.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 221
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 20 LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT---- 75
+ ++ R+ V +++ R + G++ A+D+H+N+VL D EE T + + T
Sbjct: 22 VQINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAAQQVTETEE 81
Query: 76 KRSIPMLFVRGDGVILVS---PPNRTPA 100
+R+I + +RG VI +S PP PA
Sbjct: 82 RRAIGLTIIRGAHVISLSVDGPPPADPA 109
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T + + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIP-KGKNKKPVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 99 RGDSVILV 106
>gi|196004222|ref|XP_002111978.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585877|gb|EDV25945.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 247
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 20 LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSI 79
+ ++ R+ +++ R+ G L AYD+H+N+VLGD +E +I ++ + + KRS+
Sbjct: 11 MHINYRMRATLQDTRMFIGTLLAYDKHMNIVLGDCDE---FRKIKSKSSKNQEREEKRSL 67
Query: 80 PMLFVRGDGVI 90
++ +RG+ ++
Sbjct: 68 GLVILRGENLV 78
>gi|68491613|ref|XP_710394.1| potential spliceosomal snRNA Sm core binding protein B/B'
[Candida albicans SC5314]
gi|68491630|ref|XP_710386.1| potential spliceosomal snRNA Sm core binding protein B/B'
[Candida albicans SC5314]
gi|46431578|gb|EAK91124.1| potential spliceosomal snRNA Sm core binding protein B/B'
[Candida albicans SC5314]
gi|46431587|gb|EAK91132.1| potential spliceosomal snRNA Sm core binding protein B/B'
[Candida albicans SC5314]
Length = 110
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT------ 75
++ R+ + + R G L ++D+H+N+VL D EE+ I +++Y ++ K T
Sbjct: 5 INFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEES----RITKKSYSQLKKHTPNVELV 60
Query: 76 --KRSIPMLFVRGDGVILVSPPNRTP 99
KR++ ++ +RGD V+ + + P
Sbjct: 61 YDKRNLGLIILRGDQVVSFTIESNAP 86
>gi|323450318|gb|EGB06200.1| hypothetical protein AURANDRAFT_16819, partial [Aureococcus
anophagefferens]
Length = 81
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE------TVTTVEIDEETYEEIYKTT 75
++ R+ V + + R L G A+D+H+N+VL D EE TV I EE E
Sbjct: 5 INYRMRVTIADSRTLVGTFLAFDKHMNLVLADCEEYRKIKAKKGTVGISEEREE------ 58
Query: 76 KRSIPMLFVRGDGVILVS---PP 95
KR++ ++ +RG+ V+ +S PP
Sbjct: 59 KRTLGLVLLRGEMVVSLSVEGPP 81
>gi|322791094|gb|EFZ15676.1| hypothetical protein SINV_04240 [Solenopsis invicta]
Length = 83
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
PL+L+ + R+H+ M+N++ + G L +D +NM+L DV E+ T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + ++ V M+ ++ G L +D ++NMVL DV E D Y
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDV------TEFD-------YA 53
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
+ +P + + G+ V ++ P P
Sbjct: 54 GNQEKLPKILLNGNNVCMLIPGGEGP 79
>gi|330929454|ref|XP_003302642.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
gi|311321831|gb|EFQ89242.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
Length = 212
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTT----KR 77
++ R+ V +++ R + G++ A+D+H+N+VL D EE T + + T +R
Sbjct: 15 INYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAAQQVTETEERR 74
Query: 78 SIPMLFVRGDGVILVS---PPNRTPA 100
+I + +RG VI +S PP PA
Sbjct: 75 AIGLTIIRGAHVISLSVDGPPPADPA 100
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+N+R G L +D +NMVL DV E Y+ Y
Sbjct: 7 PLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTE-----------YQ--YL 53
Query: 74 TTKRSIPML---FVRGDGVILVSPPNRTP 99
R + ML + G+ + ++ P + P
Sbjct: 54 PEGRKVTMLRQTLLNGNNICMLIPGSSGP 82
>gi|302786868|ref|XP_002975205.1| hypothetical protein SELMODRAFT_415303 [Selaginella
moellendorffii]
gi|302791693|ref|XP_002977613.1| hypothetical protein SELMODRAFT_417493 [Selaginella
moellendorffii]
gi|300154983|gb|EFJ21617.1| hypothetical protein SELMODRAFT_417493 [Selaginella
moellendorffii]
gi|300157364|gb|EFJ23990.1| hypothetical protein SELMODRAFT_415303 [Selaginella
moellendorffii]
Length = 101
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E + +++ KT
Sbjct: 9 LDLAKF-IDKGVCVKLSGGRQVIGTLKGYDQLLNLVLDEAVEYL-------RDHDDPLKT 60
Query: 75 T--KRSIPMLFVRGDGVILVSPPNRT 98
T R++ ++ RG V+LV+P + T
Sbjct: 61 TDQTRALGLVVCRGTAVMLVAPTDGT 86
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + ++ER+ VK R + G L YDQ LN+VL DVEE + E
Sbjct: 51 LDLQKY-MNERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEQLHEPE-----------P 98
Query: 75 TKRSIPMLFVRGDGVILVSP 94
KRS+ ++ +RG + L++P
Sbjct: 99 RKRSLGLVVLRGPTITLLNP 118
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T V + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP-KGKNKKPVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD VIL+
Sbjct: 99 RGDSVILI 106
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 20 LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
L ++ R+ V +++ R L GK A+D+H+N+VLGD EE
Sbjct: 11 LYINWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ ++ + + G + +D+H N++L DV E D + ++ ++ IP
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 82 LFVRGDGVILVS 93
LF RGD VIL++
Sbjct: 87 LFFRGDAVILIT 98
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL L++ + +V + RN R L ++ A+D+H NMVL +V+E + T + + +
Sbjct: 35 PLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKE-MWTEKPKGGNGKGV 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 94 NK--DRFISKMFLRGDSVILV 112
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 20 LSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSI 79
L+L + V V++R+ + G L AYD+HLN+V + ET I+ YK K+S
Sbjct: 17 LALRKPVLVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIE-------YKEDKKS- 68
Query: 80 PMLFVRGDGVILV 92
+RGD VI+V
Sbjct: 69 --FMLRGDNVIMV 79
>gi|348673388|gb|EGZ13207.1| hypothetical protein PHYSODRAFT_334991 [Phytophthora sojae]
Length = 106
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 10 SVKEP-LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETY 68
S K+P LDL + +D+ V VK R + G L YDQ +N+VL D VE +
Sbjct: 11 SRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDC------VEFLRDPN 63
Query: 69 EEIYKTTK--RSIPMLFVRGDGVILVSPPNRT 98
+E Y+ T R + ++ RG V+LVSP + T
Sbjct: 64 DE-YRITDDTRKVGLVVCRGTSVMLVSPVDGT 94
>gi|424814008|ref|ZP_18239186.1| small nuclear ribonucleoprotein [Candidatus Nanosalina sp.
J07AB43]
gi|339757624|gb|EGQ42881.1| small nuclear ribonucleoprotein [Candidatus Nanosalina sp.
J07AB43]
Length = 79
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 18/87 (20%)
Query: 12 KEPLDLIRLSLDERVHVKMRN----ERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
K P D++ + + V +K++ E + G+L A+D+HLN+ L + TV+ +E T
Sbjct: 6 KRPFDVLDDAKEGNVLIKLKKFGDEETTVSGELQAFDKHLNVWLQNA-----TVKGEEST 60
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
E LFVRGD V+ VSP
Sbjct: 61 TEH---------GRLFVRGDNVLFVSP 78
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +R+ R L ++ A+D+H NMVL +V+E T + +
Sbjct: 34 PLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLF 83
+V + RN R L ++ A+D+H NMVL +V+E T ++ + K R + +F
Sbjct: 36 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWT----EKPKGGKGKGVNKDRFVSKMF 91
Query: 84 VRGDGVILV 92
+RGD VILV
Sbjct: 92 LRGDSVILV 100
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE--TVTTVEIDEETYEEIYKTTKRSI 79
++ R+ V + + R L G++ A+D+H+N+VL + EE V + ET + KRS+
Sbjct: 5 INWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSL 64
Query: 80 PMLFVRGDGVILVS 93
++ +RG+ V+ +S
Sbjct: 65 GLVILRGETVVSLS 78
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ +V + +R+ R L ++ A+D+H NMVL +V+E T + +
Sbjct: 34 PLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADGKKGR 93
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + RN R L ++ A+D+H NMVL +V+E T + R + +F+
Sbjct: 120 QVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGKG---VNKDRFVSKMFL 176
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 177 RGDSVILV 184
>gi|294463208|gb|ADE77140.1| unknown [Picea sitchensis]
Length = 98
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +D+ V VK+ R + G L YDQ LN+VL + E + ++ KT
Sbjct: 9 LDLAKF-IDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFL-------RDQDDPLKT 60
Query: 75 TKRSIP--MLFVRGDGVILVSPPNRT 98
T ++ P ++ RG V+LV+P + T
Sbjct: 61 TDQTRPLGLIVCRGTAVMLVAPTDGT 86
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE 56
PL ++ L++R+ + +++ RVL GKL YD ++NMVL D EE
Sbjct: 4 PLKMLENFLNKRISLLLKDNRVLEGKLVGYDDYMNMVLMDTEE 46
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ S+ ++ + +RN + L ++ A+D+H NMVL +V+E T V + + +
Sbjct: 29 PLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP-KGKGKKPV 87
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
K R I +F+RGD V+LV
Sbjct: 88 NKD--RFISKMFLRGDSVVLV 106
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ V M+NER G L +D +NMVL DV E E T K
Sbjct: 7 PLELIDRCIGSRIWVIMKNEREFTGTLLGFDDFVNMVLEDVTEF-------EITSAGRKK 59
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
T R + G+ + ++ P + P
Sbjct: 60 TALRQT---LLNGNNICMLVPGSNGP 82
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
SL++ + VK+RN +RG L YDQHLN++L + EE+
Sbjct: 15 SLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNT--------------EEVNPKGGVKGG 60
Query: 81 MLFVRGDGVILVSP 94
++ +RGD V+ +SP
Sbjct: 61 LMIIRGDTVLFISP 74
>gi|225561488|gb|EEH09768.1| predicted protein [Ajellomyces capsulatus G186AR]
Length = 174
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +++ V VK R + G L YDQ +N+VL DV E + E ++
Sbjct: 88 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQ--------- 137
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 138 TTRSLGLIVARGTLLVLISP 157
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+R+ +K+ R + G L +D +N+VL D T EE TK SI M
Sbjct: 13 MDKRMMLKLNGGRAVTGILRGFDPFMNVVLDD-------------TVEECKDNTKNSIGM 59
Query: 82 LFVRGDGVILVSPPNR 97
+ +RG+ +++V +R
Sbjct: 60 VVIRGNSIVMVEALDR 75
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEE---TVTTVEIDEETYEEIYKTTKRS 78
++ R+ V + + R L G++ A+D+H+N+VL D EE + EET E + KR+
Sbjct: 5 INWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPE--QEMKRT 62
Query: 79 IPMLFVRGDGVILVS---PP 95
+ ++ +RG+ V+ +S PP
Sbjct: 63 LGLVILRGETVVSLSVEGPP 82
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPM 81
+ +V + RN + L ++ A+D+H NMVL V+E T + ++ K R I
Sbjct: 44 NTQVLIFCRNNKKLLARVKAFDRHCNMVLEQVKEMWTETPKAGKGQKKKKPINKDRFISK 103
Query: 82 LFVRGDGVILV 92
+F+RGD VILV
Sbjct: 104 MFLRGDTVILV 114
>gi|154282731|ref|XP_001542161.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410341|gb|EDN05729.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 171
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + +++ V VK R + G L YDQ +N+VL DV E + E ++
Sbjct: 85 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQ--------- 134
Query: 75 TKRSIPMLFVRGDGVILVSP 94
T RS+ ++ RG ++L+SP
Sbjct: 135 TTRSLGLIVARGTLLVLISP 154
>gi|448611893|ref|ZP_21662323.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
gi|445742654|gb|ELZ94148.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
Length = 76
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGD-VEETVTTVEIDEETYEEIY 72
PLD++ SLDE V V +++ G L YDQH+N+VL + ++E +ID E E+
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYYGVLAGYDQHMNVVLEEALDEDAVPGDIDLEQVED-- 62
Query: 73 KTTKRSIPMLFVRGDGVILV 92
TT +RGD V+ +
Sbjct: 63 -TT-------IIRGDNVVTI 74
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEI-DEETYEE 70
PL L++ ++ +V + +R+ R L ++ A+D+H NM+L +V+E T + + +
Sbjct: 34 PLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHNGKKGRP 93
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
+ K R I +F+RGD VI+V
Sbjct: 94 VNK--DRFISKMFLRGDSVIIV 113
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D+R+ +K+ R + G L +D +N+VL D T EE TK SI M
Sbjct: 13 MDKRMMLKLNGGRAVTGILRGFDPFMNVVLDD-------------TIEECKDNTKNSIGM 59
Query: 82 LFVRGDGVILVSPPNR 97
+ +RG+ +++V +R
Sbjct: 60 VVIRGNSIVMVEALDR 75
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 25 RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84
+V + +RN + L ++ A+D+H NMVL +V+E T + + + + K R I +F+
Sbjct: 42 QVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMP-KGKNKKAVNKD--RFISKMFL 98
Query: 85 RGDGVILV 92
RGD VILV
Sbjct: 99 RGDSVILV 106
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,581,981,795
Number of Sequences: 23463169
Number of extensions: 56878586
Number of successful extensions: 174708
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 863
Number of HSP's that attempted gapping in prelim test: 172881
Number of HSP's gapped (non-prelim): 1969
length of query: 101
length of database: 8,064,228,071
effective HSP length: 70
effective length of query: 31
effective length of database: 6,421,806,241
effective search space: 199075993471
effective search space used: 199075993471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)