BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3154
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/95 (81%), Positives = 90/95 (94%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LGDVEETVTT+E
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 IDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNR 97
IDEETYEEIYK+TKR+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 76/89 (85%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V+EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L DVEET+ VE DEET E
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPPNRT 98
EI + KR+I MLFVRGDGVIL+SPP RT
Sbjct: 68 EIIRNIKRNIKMLFVRGDGVILISPPLRT 96
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
+V EPLDL+RLSLDE V+VK+R +R L G+LHAYD+HLNMVLGD EE VT + +E +
Sbjct: 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD 65
Query: 70 EIYKTTKRSIPMLFVRGDGVILVSPP 95
+ KT ++ MLFVRGD VIL++PP
Sbjct: 66 KALKTIRKHYEMLFVRGDSVILIAPP 91
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLDL++L+LDERV++K+R R L G L A+D H N+VL D ET+ + +EE E
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLN-NEELSE---- 58
Query: 74 TTKRSIPMLFVRGDGVILVSPPN 96
++R M+F+RGD V L+S P+
Sbjct: 59 -SERRCEMVFIRGDTVTLISTPS 80
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT 60
M D ++V+ PLD + SL+ V +K++ +R RG L ++D H+N+VL D EE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---- 56
Query: 61 VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94
+E E T R + + +RGD ++ +SP
Sbjct: 57 LEDGEVT---------RRLGTVLIRGDNIVYISP 81
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S++ +V + +RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 19 PLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKA 78
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VILV
Sbjct: 79 KPINKDRFISKMFLRGDSVILV 100
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 14/73 (19%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D V VK+++ ++G L YDQHLN++LGD EEI +T+ R + +
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA--------------EEIGETSIRRLGL 62
Query: 82 LFVRGDGVILVSP 94
VRGD V++++P
Sbjct: 63 TLVRGDSVVVITP 75
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
+ PLD++ +L+ V V+++ R RG+L YD H+N+VL + EE
Sbjct: 3 QRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKEN----------- 51
Query: 72 YKTTKRSIPMLFVRGDGVILVSP 94
R + + VRGD V+ VSP
Sbjct: 52 --EASRKLGTIIVRGDTVVYVSP 72
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + + +
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D + +E E
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQ----LIENGE-------- 52
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K+S + +RGD V+ +SP
Sbjct: 53 -PKKSYGKIVIRGDNVLAISP 72
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ SL V V+++ R RG L YD H+N+VL D EE + E +
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI--------QNGEVV-- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R + + +RGD V+ VSP
Sbjct: 55 ---RKVGSVVIRGDTVVFVSP 72
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T V + ++
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 72 YKTTK-RSIPMLFVRGDGVILV 92
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTV-EIDEETYEE 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL +V+E T + + +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86
Query: 71 IYKTTKRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 14 PLDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
PL +++ ++ ++V + RN + L ++ A+D+H NMVL +V+E T + +
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
R I +F+RGDGV+LV
Sbjct: 89 AINKDRFISKMFLRGDGVVLV 109
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +L+ V V+++ R RG L YD H+N+VL + EE D E
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELK-----DGEIV----- 54
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
R I + +RGD V+ VSP
Sbjct: 55 ---RKIGGVVIRGDNVVYVSP 72
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------REGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + +RGD V+ VSP
Sbjct: 57 FSS-----VVIRGDNVVYVSP 72
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------RDGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + +RGD V+ VSP
Sbjct: 57 FSS-----VVIRGDNVVYVSP 72
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLALSP 72
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD++ +LD V V+++ R RG+L YD H+N+VL + EE E + K
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL--------REGEVVSK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ +RGD V+ VSP
Sbjct: 57 FGS-----VVIRGDNVVYVSP 72
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + K
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMV--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
++ R+ V +++ RV+ G+ A+D+H+N+V+ D EE + +E EE KR++ M
Sbjct: 14 INYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREE-----KRTLGM 68
Query: 82 LFVRGDGVILVS 93
+ +RG+ V+ +S
Sbjct: 69 ILIRGETVVSMS 80
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1830 PE=3 SV=1
Length = 70
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+P +++ L ERV VK ++ G L +D+H+N++L T ++VE E+
Sbjct: 3 DPFCFLKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML-----TCSSVEGSED------ 51
Query: 73 KTTKRSIPMLFVRGDGVILVSP 94
+LF+RG+ ++ V P
Sbjct: 52 -------KVLFLRGENILFVGP 66
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL E + E + K
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMI--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL + E + E + K
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELL--------QDGEVVKK 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RG+L YD HLN+VL D E + E + +
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMI--------QDGEVVKR 56
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
K + +RGD V+ +SP
Sbjct: 57 YGK-----IVIRGDNVLAISP 72
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEET 67
T++ +P+D+++ +L V + ++ R G L YD ++N+VL + E +
Sbjct: 4 TVANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIING------- 56
Query: 68 YEEIYKTTKRSIPMLFVRGDGVILVSP 94
K + VRGD VI VSP
Sbjct: 57 ------ENKGVFDRILVRGDNVIFVSP 77
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PLD+I SLD+ V V ++ RGKL YD HLN+VL + E+ K
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDG---------EVVK 55
Query: 74 TTKRSIPMLFVRGDGVILVSP 94
+ + + VRGD V+ +SP
Sbjct: 56 SYGK----IVVRGDNVLAISP 72
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 14 PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
P+ LI ++ R V + +RN + ++ A+D+H NMVL +V+E T E+ + +
Sbjct: 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWT-----EKKGKNV 84
Query: 72 YKTTKRSIPMLFVRGDGVILV 92
+R I LF+RGD VI+V
Sbjct: 85 I-NRERFISKLFLRGDSVIVV 104
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 14 PLDLIRLSLDERVHVK--MRNERVLRGKLH----AYDQHLNMVLGDVEE---TVTTVEID 64
PL L++ +L+ + +K +R +RG A+D+H+N++L DVEE + ++
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 65 EETYEEIYKTTKRSIPMLFVRGDGVILV 92
+ I KR LF++GD V+ V
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSV 253
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL R D+R+ R + G L +DQ +N+VL DVEE + E + T
Sbjct: 26 LDLSRYQ-DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLT------G 78
Query: 75 TKRSIPMLFVRGDGVILVSP 94
R + ++ VRG ++L++P
Sbjct: 79 AIRKLGLVVVRGTTLVLIAP 98
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 18 IRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKR 77
++ +D+R+ +K+ R + G L +D +N+VL D T EE TK
Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDD-------------TVEECKDNTKN 55
Query: 78 SIPMLFVRGDGVILVSPPNR 97
+I M+ +RG+ +++V +R
Sbjct: 56 NIGMVVIRGNSIVMVEALDR 75
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIY 72
+P+D+++ +L V + ++ R G L YD ++N+VL + E + ++ Y+ +
Sbjct: 9 KPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGE--NKGVYDRV- 65
Query: 73 KTTKRSIPMLFVRGDGVILVSP 94
VRGD VI VSP
Sbjct: 66 ----------LVRGDNVIFVSP 77
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + + V M++ER G L +D ++N+VL DV E Y+ +
Sbjct: 7 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE-----------YDTVTG 55
Query: 74 TTKRSIPMLFVRGDGVILVSPPNR 97
T++ ML + G+G+ ++ P +
Sbjct: 56 VTEKHSEML-LNGNGMCMLIPGGK 78
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M++++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLVPGGEG 88
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M++++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLVPGGEG 88
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M++++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLVPGGEG 88
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+L+ + R+H+ M++++ + G L +D +NMVL DV E T E T +
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 73
Query: 74 TTKRSIPMLFVRGDG 88
+I ML G+G
Sbjct: 74 LNGNNITMLVPGGEG 88
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
L+ RV + +++ R G A+D+H+N++LGD EE + + E + KR +
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE---REEKRVLGF 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENIV 78
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYK 73
PL+LI + R+ + M+N++ G L +D ++N+ L DV E E E K
Sbjct: 18 PLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEY--------EYTPEGLK 69
Query: 74 TTKRSIPMLFVRGDGVILVSPPNRTP 99
T K + + + G+ V L+ P P
Sbjct: 70 TVK--LDNILLNGNHVCLLVPGGEGP 93
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 21 SLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIP 80
S+D ++ V +R+ R+L G L +DQ+ N++L D E + E E Y R I
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSE------ENKYAEEDRGIF 102
Query: 81 MLFVRGDGVILVS 93
M +RG+ V+++
Sbjct: 103 M--IRGENVVMLG 113
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKT 74
LDL + D ++ VK+ +++ G L YDQ +N+VL D E ++ D+E E+
Sbjct: 28 LDLAKYK-DSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNP--DDENNTELISK 84
Query: 75 TKRSIPMLFVRGDGVILVS 93
R + + +R G ILVS
Sbjct: 85 NARKLGLTVIR--GTILVS 101
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ +++ R+ G A+D+H+N++L D +E +I + ++ + KR + +
Sbjct: 13 IDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ +++ R+ G A+D+H+N++L D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ +++ R+ G A+D+H+N++L D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ +++ R+ G A+D+H+N++L D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 82 LFVRGDGVI 90
+ +RG+ ++
Sbjct: 70 VLLRGENLV 78
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPM 81
+D R+ +++ R+ G A+D+H+N++L D +E +I + ++ + KR + +
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDE---FRKIKPKNSKQAEREEKRVLGL 69
Query: 82 LFVRGDGVILVS----PPNRT 98
+ +RG+ ++ ++ PP T
Sbjct: 70 VLLRGENLVSMTVEGPPPKDT 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,174,315
Number of Sequences: 539616
Number of extensions: 1396935
Number of successful extensions: 5246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5146
Number of HSP's gapped (non-prelim): 103
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)