Query psy3154
Match_columns 101
No_of_seqs 114 out of 1061
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:47:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emg_A Probable U6 snRNA-assoc 99.9 2.3E-26 7.8E-31 147.2 9.6 87 9-95 5-91 (93)
2 1i4k_A Putative snRNP SM-like 99.9 3.6E-26 1.2E-30 141.2 9.7 75 12-99 3-77 (77)
3 3bw1_A SMX4 protein, U6 snRNA- 99.9 1E-25 3.5E-30 144.8 10.8 84 10-99 7-90 (96)
4 4emk_A U6 snRNA-associated SM- 99.9 8.5E-26 2.9E-30 144.9 10.3 81 4-96 11-91 (94)
5 1h64_1 SnRNP SM-like protein; 99.9 2.3E-25 7.9E-30 137.0 9.7 73 12-97 3-75 (75)
6 1ljo_A Archaeal SM-like protei 99.9 4E-25 1.4E-29 136.6 10.0 75 10-97 2-77 (77)
7 1th7_A SnRNP-2, small nuclear 99.9 3.3E-25 1.1E-29 138.2 9.3 74 12-98 8-81 (81)
8 1i8f_A Putative snRNP SM-like 99.9 4.7E-25 1.6E-29 137.6 9.7 74 10-97 8-81 (81)
9 3s6n_F Small nuclear ribonucle 99.9 6.9E-25 2.3E-29 138.5 10.2 76 11-99 4-79 (86)
10 2fwk_A U6 snRNA-associated SM- 99.9 2.5E-25 8.5E-30 148.3 7.9 94 7-100 22-117 (121)
11 1mgq_A SM-like protein; LSM, R 99.9 1.2E-24 4E-29 136.4 9.9 75 7-94 9-83 (83)
12 4emk_B U6 snRNA-associated SM- 99.9 4.8E-25 1.6E-29 135.8 7.0 73 12-97 3-75 (75)
13 1d3b_A Protein (small nuclear 99.9 1.5E-24 5.3E-29 133.7 9.3 74 10-96 2-75 (75)
14 4emk_C U6 snRNA-associated SM- 99.9 1.5E-24 5.3E-29 143.1 9.1 87 8-100 18-104 (113)
15 1b34_B Protein (small nuclear 99.9 1.8E-24 6.2E-29 143.5 9.5 91 10-100 24-117 (118)
16 1d3b_B Protein (small nuclear 99.9 1.1E-24 3.6E-29 138.4 7.6 85 13-100 4-88 (91)
17 1n9r_A SMF, small nuclear ribo 99.9 1.5E-24 5E-29 138.9 8.1 79 5-96 13-92 (93)
18 3s6n_G Small nuclear ribonucle 99.9 5.9E-24 2E-28 131.2 7.8 72 13-97 4-75 (76)
19 3s6n_E Small nuclear ribonucle 99.9 3.4E-24 1.2E-28 136.9 6.6 76 9-96 12-91 (92)
20 4emh_A Probable U6 snRNA-assoc 99.9 2.4E-23 8.2E-28 135.9 8.2 75 11-97 14-88 (105)
21 3pgw_B SM B; protein-RNA compl 99.9 1.6E-22 5.5E-27 146.9 11.0 84 12-98 3-86 (231)
22 1b34_A Protein (small nuclear 99.9 1E-22 3.6E-27 135.3 8.8 72 13-97 2-73 (119)
23 2y9a_D Small nuclear ribonucle 99.9 3.1E-22 1.1E-26 134.3 8.6 75 10-97 2-76 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 2.2E-20 7.6E-25 125.8 7.8 67 15-98 2-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.0 1.5E-09 5.2E-14 68.1 6.0 68 11-98 6-74 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.4 0.00084 2.9E-08 42.0 7.5 76 20-99 10-86 (88)
27 2ylb_A Protein HFQ; RNA-bindin 97.2 0.0009 3.1E-08 40.6 5.2 37 16-53 12-50 (74)
28 1u1s_A HFQ protein; SM-like ba 97.0 0.0018 6.2E-08 40.0 5.6 29 22-50 18-46 (82)
29 3sb2_A Protein HFQ; SM-like, R 96.8 0.0032 1.1E-07 38.6 5.6 29 22-50 19-47 (79)
30 2fb7_A SM-like protein, LSM-14 96.8 0.0029 1E-07 40.0 5.6 80 14-97 10-90 (95)
31 2y90_A Protein HFQ; RNA-bindin 96.7 0.004 1.4E-07 40.0 5.6 35 17-51 13-49 (104)
32 1kq1_A HFQ, HOST factor for Q 96.7 0.0044 1.5E-07 37.7 5.4 37 17-53 11-49 (77)
33 1ycy_A Conserved hypothetical 96.7 0.01 3.4E-07 35.0 6.7 61 16-94 9-69 (71)
34 2qtx_A Uncharacterized protein 96.5 0.0045 1.5E-07 37.2 4.7 32 22-53 24-55 (71)
35 3ahu_A Protein HFQ; SM-like mo 96.5 0.006 2.1E-07 37.3 5.2 31 23-53 23-53 (78)
36 1y96_B Gemin7, SIP3, GEM-assoc 96.1 0.027 9.2E-07 34.8 6.6 66 11-94 17-83 (85)
37 4a53_A EDC3; RNA binding prote 95.3 0.032 1.1E-06 36.8 4.9 39 18-57 7-47 (125)
38 3hfo_A SSR3341 protein; HFQ, S 94.9 0.073 2.5E-06 31.8 5.3 40 11-50 6-48 (70)
39 3hfn_A ASL2047 protein; HFQ, S 94.1 0.15 5.2E-06 30.5 5.5 41 12-53 9-52 (72)
40 2vc8_A Enhancer of mRNA-decapp 93.7 0.13 4.4E-06 31.7 4.7 37 19-55 5-43 (84)
41 3rux_A BIRA bifunctional prote 90.9 0.33 1.1E-05 35.2 4.8 33 22-54 223-255 (270)
42 1ib8_A Conserved protein SP14. 88.7 0.45 1.5E-05 32.3 3.8 41 10-51 88-135 (164)
43 2rm4_A CG6311-PB, DM EDC3; enh 86.1 2.2 7.5E-05 26.9 5.5 36 20-56 9-45 (103)
44 2eay_A Biotin [acetyl-COA-carb 83.1 1 3.5E-05 31.8 3.4 30 22-53 187-216 (233)
45 2e12_A SM-like motif, hypothet 82.3 2.6 8.9E-05 26.2 4.5 21 20-40 23-45 (101)
46 2ej9_A Putative biotin ligase; 79.7 2.7 9.1E-05 29.7 4.6 31 22-53 191-221 (237)
47 1bia_A BIRA bifunctional prote 76.9 3.9 0.00013 29.9 4.9 31 22-53 272-302 (321)
48 2dxu_A Biotin--[acetyl-COA-car 76.2 2.2 7.7E-05 30.1 3.3 30 22-53 188-217 (235)
49 2xk0_A Polycomb protein PCL; t 72.0 7.8 0.00027 22.8 4.4 43 18-60 14-57 (69)
50 3rkx_A Biotin-[acetyl-COA-carb 71.8 4.6 0.00016 29.8 4.2 31 22-53 278-308 (323)
51 3bfm_A Biotin protein ligase-l 71.7 5.9 0.0002 27.7 4.6 27 22-53 193-219 (235)
52 4hcz_A PHD finger protein 1; p 62.0 13 0.00045 21.1 3.8 38 22-59 6-46 (58)
53 1ky9_A Protease DO, DEGP, HTRA 51.3 22 0.00076 27.2 4.8 31 24-54 111-141 (448)
54 4a8c_A Periplasmic PH-dependen 50.8 23 0.00078 26.9 4.8 31 24-54 88-118 (436)
55 2qqr_A JMJC domain-containing 48.5 22 0.00074 22.8 3.7 23 22-44 8-30 (118)
56 2eqj_A Metal-response element- 46.5 33 0.0011 19.8 3.9 38 22-59 16-56 (66)
57 3fb9_A Uncharacterized protein 44.4 35 0.0012 20.9 4.0 29 15-43 17-49 (90)
58 3stj_A Protease DEGQ; serine p 41.9 33 0.0011 25.2 4.4 31 24-54 88-118 (345)
59 3pv2_A DEGQ; trypsin fold, PDZ 38.7 30 0.001 26.4 3.8 31 24-54 102-132 (451)
60 3j21_c 50S ribosomal protein L 38.1 22 0.00075 21.7 2.4 36 15-50 32-67 (87)
61 3tee_A Flagella basal BODY P-r 37.8 21 0.00071 24.9 2.5 22 21-42 169-190 (219)
62 3sti_A Protease DEGQ; serine p 36.8 41 0.0014 23.5 4.0 31 24-54 88-118 (245)
63 1sqr_A 50S ribosomal protein L 34.0 30 0.001 21.4 2.5 36 16-51 33-68 (95)
64 1te0_A Protease DEGS; two doma 33.7 55 0.0019 23.4 4.4 32 24-55 66-97 (318)
65 3lgi_A Protease DEGS; stress-s 33.6 62 0.0021 22.0 4.4 31 24-54 77-107 (237)
66 1lcy_A HTRA2 serine protease; 33.1 59 0.002 23.4 4.4 32 24-55 71-102 (325)
67 3tjo_A Serine protease HTRA1; 32.7 66 0.0022 21.9 4.4 32 24-55 87-118 (231)
68 2m0o_A PHD finger protein 1; t 32.5 23 0.00078 21.2 1.7 41 19-59 26-69 (79)
69 2wr8_A Putative uncharacterize 31.4 39 0.0014 24.3 3.2 20 33-52 171-190 (259)
70 1y8t_A Hypothetical protein RV 31.4 58 0.002 23.3 4.1 32 24-55 64-95 (324)
71 2zbv_A Uncharacterized conserv 30.2 42 0.0014 24.2 3.2 20 33-52 167-186 (263)
72 1sg5_A ORF, hypothetical prote 29.8 18 0.00062 21.8 1.0 17 23-39 25-41 (86)
73 1x4r_A PARP14 protein; WWE dom 29.0 3.5 0.00012 25.9 -2.5 18 38-55 35-52 (99)
74 3qx1_A FAS-associated factor 1 28.3 37 0.0013 19.6 2.2 22 24-45 8-29 (84)
75 4fln_A Protease DO-like 2, chl 26.8 61 0.0021 25.7 3.8 31 24-54 97-128 (539)
76 3kl9_A PEPA, glutamyl aminopep 26.3 48 0.0016 24.5 3.0 23 21-43 97-119 (355)
77 3num_A Serine protease HTRA1; 26.2 1.1E+02 0.0038 21.9 4.9 31 24-54 70-100 (332)
78 3qo6_A Protease DO-like 1, chl 25.8 81 0.0028 22.9 4.1 31 24-54 77-107 (348)
79 3frn_A Flagellar protein FLGA; 25.6 50 0.0017 24.2 2.9 21 21-41 238-259 (278)
80 2xdp_A Lysine-specific demethy 24.9 92 0.0032 20.0 3.8 23 22-44 67-89 (123)
81 2dzk_A UBX domain-containing p 21.6 74 0.0025 19.5 2.8 21 24-44 14-34 (109)
82 2e5p_A Protein PHF1, PHD finge 21.6 1.3E+02 0.0044 17.4 3.8 38 22-59 12-52 (68)
83 2cw5_A Bacterial fluorinating 21.1 52 0.0018 23.7 2.2 17 36-52 174-190 (255)
84 2w5e_A Putative serine proteas 20.8 1.8E+02 0.0062 18.8 5.0 29 24-54 43-71 (163)
85 2dir_A Thump domain-containing 20.6 99 0.0034 18.2 3.2 22 24-45 75-96 (98)
No 1
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.3e-26 Score=147.21 Aligned_cols=87 Identities=59% Similarity=0.924 Sum_probs=66.3
Q ss_pred cccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCe
Q psy3154 9 ISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDG 88 (101)
Q Consensus 9 ~~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~ 88 (101)
+....|+++|+.+++++|+|+|++||+|+|+|.|||+||||+|+||.|++...+++++..+.......+.+|++||||++
T Consensus 5 ~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~n 84 (93)
T 4emg_A 5 QAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDS 84 (93)
T ss_dssp ----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGG
T ss_pred cccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCe
Confidence 45789999999999999999999999999999999999999999999998764432210000112467999999999999
Q ss_pred EEEEecC
Q psy3154 89 VILVSPP 95 (101)
Q Consensus 89 Iv~I~~~ 95 (101)
|++|+++
T Consensus 85 Vv~I~p~ 91 (93)
T 4emg_A 85 VILIAPP 91 (93)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9999975
No 2
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.94 E-value=3.6e-26 Score=141.15 Aligned_cols=75 Identities=37% Similarity=0.614 Sum_probs=67.6
Q ss_pred CChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEE
Q psy3154 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVIL 91 (101)
Q Consensus 12 ~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 91 (101)
..|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||.|++.. ...+++|.+||||++|++
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------------~~~~~lg~v~iRG~~I~~ 69 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-------------EVVRKVGSVVIRGDTVVF 69 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT-------------EEEEEEEEEEECGGGEEE
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC-------------CcEeECCEEEECCCEEEE
Confidence 5899999999999999999999999999999999999999999998742 357899999999999999
Q ss_pred EecCCCCC
Q psy3154 92 VSPPNRTP 99 (101)
Q Consensus 92 I~~~~~~~ 99 (101)
|.++|+++
T Consensus 70 i~~~d~~~ 77 (77)
T 1i4k_A 70 VSPAPGGE 77 (77)
T ss_dssp EEECC---
T ss_pred EEeCCCCC
Confidence 99999875
No 3
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-25 Score=144.82 Aligned_cols=84 Identities=43% Similarity=0.749 Sum_probs=71.9
Q ss_pred ccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 10 ~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
.++.|+++|+++++++|+|+|+|||+|+|+|.|||+||||+|+||.|++...++.. .....+.+|.+||||++|
T Consensus 7 ~~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~------~~~~~r~lG~v~IRG~nV 80 (96)
T 3bw1_A 7 HMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEE------LSESERRCEMVFIRGDTV 80 (96)
T ss_dssp CCCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTC------CCEEEEEEEEEEECGGGE
T ss_pred hhhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccc------cCcceeEcCEEEECCCEE
Confidence 57899999999999999999999999999999999999999999999987543210 124578999999999999
Q ss_pred EEEecCCCCC
Q psy3154 90 ILVSPPNRTP 99 (101)
Q Consensus 90 v~I~~~~~~~ 99 (101)
++|++.|+..
T Consensus 81 v~I~~~d~~~ 90 (96)
T 3bw1_A 81 TLISTPSEDD 90 (96)
T ss_dssp EEEECCC---
T ss_pred EEEEecCccc
Confidence 9999998754
No 4
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.93 E-value=8.5e-26 Score=144.94 Aligned_cols=81 Identities=28% Similarity=0.447 Sum_probs=66.0
Q ss_pred ccCCccccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEE
Q psy3154 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLF 83 (101)
Q Consensus 4 ~~~~~~~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~ 83 (101)
.|-|+..+..|+++|.++++++|+|.|++||+|+|+|.|||+||||+|+||.|++.. + ...+.+|.++
T Consensus 11 ~~~~~~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~--------~~~~~lg~v~ 78 (94)
T 4emk_A 11 SQDPMSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----T--------GVTEKHSEML 78 (94)
T ss_dssp ---------CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----T--------CCEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----C--------CcEeEcCEEE
Confidence 467888999999999999999999999999999999999999999999999998731 1 2478899999
Q ss_pred EcCCeEEEEecCC
Q psy3154 84 VRGDGVILVSPPN 96 (101)
Q Consensus 84 IRG~~Iv~I~~~~ 96 (101)
|||+||++|++..
T Consensus 79 IRG~nI~~i~p~~ 91 (94)
T 4emk_A 79 LNGNGMCMLIPGG 91 (94)
T ss_dssp ECSTTEEEEEECC
T ss_pred EcCCEEEEEEeCC
Confidence 9999999999874
No 5
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.93 E-value=2.3e-25 Score=136.97 Aligned_cols=73 Identities=37% Similarity=0.600 Sum_probs=66.4
Q ss_pred CChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEE
Q psy3154 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVIL 91 (101)
Q Consensus 12 ~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 91 (101)
..|+++|+++++++|+|+|+|||+|+|+|.|||+|||++|+||.|++.. ...+.+|.+||||++|++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------------~~~~~lg~v~iRG~~I~~ 69 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-------------EVVKRYGKIVIRGDNVLA 69 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-------------EEEEEEEEEEECGGGEEE
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-------------CceeECCEEEECCCEEEE
Confidence 5799999999999999999999999999999999999999999998741 357899999999999999
Q ss_pred EecCCC
Q psy3154 92 VSPPNR 97 (101)
Q Consensus 92 I~~~~~ 97 (101)
|.++|+
T Consensus 70 i~~~~e 75 (75)
T 1h64_1 70 ISPTEE 75 (75)
T ss_dssp EEEC--
T ss_pred EEeCCC
Confidence 999874
No 6
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.92 E-value=4e-25 Score=136.60 Aligned_cols=75 Identities=25% Similarity=0.462 Sum_probs=67.3
Q ss_pred ccCChHHHHHHhcCCEEEEEEcCC-eEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCe
Q psy3154 10 SVKEPLDLIRLSLDERVHVKMRNE-RVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDG 88 (101)
Q Consensus 10 ~~~~Pl~lL~~~l~k~V~V~l~~g-r~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~ 88 (101)
.+-.|+++|.++++++|+|+|++| ++|+|+|.|||+|||++|+||.|++.. ...+.+|.+||||++
T Consensus 2 ~m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-------------~~~~~lg~v~iRG~n 68 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-------------EKVRSLGEIVLRGNN 68 (77)
T ss_dssp CCCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-------------EEEEEEEEEEECGGG
T ss_pred CccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-------------CcEeECCeEEEeCCe
Confidence 346899999999999999999999 999999999999999999999998731 257899999999999
Q ss_pred EEEEecCCC
Q psy3154 89 VILVSPPNR 97 (101)
Q Consensus 89 Iv~I~~~~~ 97 (101)
|++|.++|+
T Consensus 69 I~~i~~~de 77 (77)
T 1ljo_A 69 VVLIQPQEE 77 (77)
T ss_dssp EEEEEEC--
T ss_pred EEEEEeCCC
Confidence 999999874
No 7
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.92 E-value=3.3e-25 Score=138.21 Aligned_cols=74 Identities=35% Similarity=0.627 Sum_probs=66.3
Q ss_pred CChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEE
Q psy3154 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVIL 91 (101)
Q Consensus 12 ~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 91 (101)
..|+++|+++++++|+|+|+|||+|.|+|.|||+|||++|+||.|++.. ...+.+|.+||||++|++
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------------~~~~~lg~v~iRG~~I~~ 74 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-------------GSGKKLGTIVIRGDNVIL 74 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-------------SCEEEEEEEEECGGGEEE
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-------------CceeECCEEEECCCEEEE
Confidence 5799999999999999999999999999999999999999999998742 246899999999999999
Q ss_pred EecCCCC
Q psy3154 92 VSPPNRT 98 (101)
Q Consensus 92 I~~~~~~ 98 (101)
|.++|++
T Consensus 75 i~~~~~~ 81 (81)
T 1th7_A 75 ISPLQTS 81 (81)
T ss_dssp EEEC---
T ss_pred EEecCCC
Confidence 9999874
No 8
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.92 E-value=4.7e-25 Score=137.62 Aligned_cols=74 Identities=31% Similarity=0.500 Sum_probs=66.7
Q ss_pred ccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 10 ~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
....|+++|.++++++|+|+|+|||+|.|+|.|||+|||++|+||.|+ . . ...+.+|.+||||++|
T Consensus 8 ~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~----~---------~~~~~lg~v~iRG~~I 73 (81)
T 1i8f_A 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I----D---------GNVYKRGTMVVRGENV 73 (81)
T ss_dssp --CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E----T---------TEEEEEEEEEECGGGE
T ss_pred cccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c----C---------CcccCCCEEEECCCEE
Confidence 367999999999999999999999999999999999999999999998 2 1 2478999999999999
Q ss_pred EEEecCCC
Q psy3154 90 ILVSPPNR 97 (101)
Q Consensus 90 v~I~~~~~ 97 (101)
++|+++||
T Consensus 74 ~~i~~~dg 81 (81)
T 1i8f_A 74 LFISPVPG 81 (81)
T ss_dssp EEEEECC-
T ss_pred EEEEeCCC
Confidence 99999986
No 9
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.92 E-value=6.9e-25 Score=138.50 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=67.1
Q ss_pred cCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEE
Q psy3154 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVI 90 (101)
Q Consensus 11 ~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv 90 (101)
...|+++|+++++++|+|+|++|++|+|+|.|||+|||++|+||.|+.. + ...+++|.+||||++|+
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g--------~~~~~lg~v~IRG~nI~ 70 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----G--------ALSGHLGEVLIRCNNVL 70 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----T--------EEEEEESSEEECGGGEE
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----C--------ceeeEccEEEEeCCeEE
Confidence 4679999999999999999999999999999999999999999998752 1 24688999999999999
Q ss_pred EEecCCCCC
Q psy3154 91 LVSPPNRTP 99 (101)
Q Consensus 91 ~I~~~~~~~ 99 (101)
+|.++|+..
T Consensus 71 ~i~~~d~~~ 79 (86)
T 3s6n_F 71 YIRGVEEEE 79 (86)
T ss_dssp EEEECC---
T ss_pred EEEeCCccc
Confidence 999998865
No 10
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.92 E-value=2.5e-25 Score=148.30 Aligned_cols=94 Identities=21% Similarity=0.393 Sum_probs=71.6
Q ss_pred CccccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcc--hhhhhcceeeeeeCeEEE
Q psy3154 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEE--TYEEIYKTTKRSIPMLFV 84 (101)
Q Consensus 7 ~~~~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~--~~~~~~~~~~r~lg~v~I 84 (101)
.+.....|+++|.++++++|+|.|++||+|+|+|+|||+||||+|+||.|++...+.... ..+.......+.+|++||
T Consensus 22 ~~~~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~I 101 (121)
T 2fwk_A 22 KGGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILL 101 (121)
T ss_dssp --CCCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEE
T ss_pred ccccccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEE
Confidence 445678999999999999999999999999999999999999999999999864211100 011111123789999999
Q ss_pred cCCeEEEEecCCCCCC
Q psy3154 85 RGDGVILVSPPNRTPA 100 (101)
Q Consensus 85 RG~~Iv~I~~~~~~~~ 100 (101)
||++|++|.+.+..++
T Consensus 102 RG~nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 102 SGNNVAMLVPGGDPDS 117 (121)
T ss_dssp CGGGEEEEESSSCC--
T ss_pred CCCEEEEEEecCCCCC
Confidence 9999999999987764
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.92 E-value=1.2e-24 Score=136.39 Aligned_cols=75 Identities=35% Similarity=0.682 Sum_probs=67.6
Q ss_pred CccccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcC
Q psy3154 7 PTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRG 86 (101)
Q Consensus 7 ~~~~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 86 (101)
+......|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||.|++.. ...+.+|.+||||
T Consensus 9 ~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------------~~~~~lg~v~IRG 75 (83)
T 1mgq_A 9 QRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG-------------EVTRRLGTVLIRG 75 (83)
T ss_dssp -CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT-------------EEEEEEEEEEECG
T ss_pred ccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC-------------CcccCCCEEEECC
Confidence 444578999999999999999999999999999999999999999999998741 3578999999999
Q ss_pred CeEEEEec
Q psy3154 87 DGVILVSP 94 (101)
Q Consensus 87 ~~Iv~I~~ 94 (101)
++|++|++
T Consensus 76 ~~I~~i~p 83 (83)
T 1mgq_A 76 DNIVYISP 83 (83)
T ss_dssp GGEEEEEC
T ss_pred CEEEEEEC
Confidence 99999975
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=4.8e-25 Score=135.78 Aligned_cols=73 Identities=22% Similarity=0.385 Sum_probs=65.6
Q ss_pred CChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEE
Q psy3154 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVIL 91 (101)
Q Consensus 12 ~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 91 (101)
..|+++|+++++++|+|+|+||++|+|+|.|||+|||++|+||.|++. + ...+++|.+||||++|++
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~--------~~~~~lg~v~iRG~~I~~ 69 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-----G--------KKTNVYGDAFIRGNNVLY 69 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-----T--------EEEEEEEEEEEEGGGSSE
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-----C--------CcccEecEEEEcCCeEEE
Confidence 679999999999999999999999999999999999999999999863 1 246889999999999999
Q ss_pred EecCCC
Q psy3154 92 VSPPNR 97 (101)
Q Consensus 92 I~~~~~ 97 (101)
|++.|.
T Consensus 70 i~~~~~ 75 (75)
T 4emk_B 70 VSALDD 75 (75)
T ss_dssp EEEC--
T ss_pred EEecCC
Confidence 998763
No 13
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.91 E-value=1.5e-24 Score=133.68 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=66.4
Q ss_pred ccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 10 ~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
+...|+++|++++|++|.|+|++|++|+|+|.|||+|||++|+||.|+.. + ...+++|.+||||++|
T Consensus 2 ~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~----~---------~~~~~lg~v~IRG~nI 68 (75)
T 1d3b_A 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----D---------GRVAQLEQVYIRGCKI 68 (75)
T ss_dssp --CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT----T---------SCEEEEEEEEECGGGE
T ss_pred CccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECC----C---------CcEEEcCeEEEeCCEE
Confidence 45789999999999999999999999999999999999999999999752 1 1368999999999999
Q ss_pred EEEecCC
Q psy3154 90 ILVSPPN 96 (101)
Q Consensus 90 v~I~~~~ 96 (101)
.+|..+|
T Consensus 69 ~~i~lPd 75 (75)
T 1d3b_A 69 RFLILPD 75 (75)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 9999986
No 14
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.91 E-value=1.5e-24 Score=143.11 Aligned_cols=87 Identities=26% Similarity=0.434 Sum_probs=58.2
Q ss_pred ccccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCC
Q psy3154 8 TISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGD 87 (101)
Q Consensus 8 ~~~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 87 (101)
+..+..|+..|.++++++|+|+|+|||+|+|+|.|||+||||+|+||.|++.... + . ......+.+|++||||+
T Consensus 18 ~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~----~-~-~~~~~~r~lG~v~IRG~ 91 (113)
T 4emk_C 18 ERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPE----D-G-KLTGAIRKLGLVVVRGT 91 (113)
T ss_dssp --------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------------CCEEEEEEEEECTT
T ss_pred cCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCC----C-c-ccccceeEccEEEECCC
Confidence 3445678888999999999999999999999999999999999999999986421 0 0 11246899999999999
Q ss_pred eEEEEecCCCCCC
Q psy3154 88 GVILVSPPNRTPA 100 (101)
Q Consensus 88 ~Iv~I~~~~~~~~ 100 (101)
+|++|++.|+.+.
T Consensus 92 nIv~I~~~d~~ee 104 (113)
T 4emk_C 92 TLVLIAPMDGSEE 104 (113)
T ss_dssp TEEEEEECC----
T ss_pred eEEEEEecCcccc
Confidence 9999999998753
No 15
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.91 E-value=1.8e-24 Score=143.52 Aligned_cols=91 Identities=31% Similarity=0.446 Sum_probs=67.0
Q ss_pred ccCChHHHHHHhc--CCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhh-hhcceeeeeeCeEEEcC
Q psy3154 10 SVKEPLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE-EIYKTTKRSIPMLFVRG 86 (101)
Q Consensus 10 ~~~~Pl~lL~~~l--~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~-~~~~~~~r~lg~v~IRG 86 (101)
.+.+|+++|+.++ +++|+|+|++||.|.|+|.|||+||||+|+||.|++...++++...+ .+.....|.+|.+||||
T Consensus 24 ~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 103 (118)
T 1b34_B 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRG 103 (118)
T ss_dssp --CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECG
T ss_pred cccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcC
Confidence 3779999999999 59999999999999999999999999999999999865332211000 01123477899999999
Q ss_pred CeEEEEecCCCCCC
Q psy3154 87 DGVILVSPPNRTPA 100 (101)
Q Consensus 87 ~~Iv~I~~~~~~~~ 100 (101)
++|++|++.+..-|
T Consensus 104 ~nVv~I~~~~~~~~ 117 (118)
T 1b34_B 104 DSVIVVLRNPLIAG 117 (118)
T ss_dssp GGEEEEEECCCCCC
T ss_pred CEEEEEEeCchhhc
Confidence 99999999987543
No 16
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.91 E-value=1.1e-24 Score=138.40 Aligned_cols=85 Identities=19% Similarity=0.422 Sum_probs=68.0
Q ss_pred ChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEE
Q psy3154 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92 (101)
Q Consensus 13 ~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I 92 (101)
+|...|.++++++|+|+|+|||+|+|+|.|||+||||+|+||.|++...+.+. +.......+.+|++||||++|++|
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~---~~~~~~~~~~lg~v~iRG~~I~~i 80 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS---KQAEREEKRVLGLVLLRGENLVSM 80 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSST---TSCCEEEEEEEEEEEECGGGEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeecccccc---ccccCccEeECCEEEECCCeEEEE
Confidence 57788999999999999999999999999999999999999999875432211 001134689999999999999999
Q ss_pred ecCCCCCC
Q psy3154 93 SPPNRTPA 100 (101)
Q Consensus 93 ~~~~~~~~ 100 (101)
++++..++
T Consensus 81 ~~~~~~~~ 88 (91)
T 1d3b_B 81 TVEGPPPK 88 (91)
T ss_dssp EEEECCC-
T ss_pred EcCCCCCC
Confidence 99876553
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.91 E-value=1.5e-24 Score=138.86 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=61.0
Q ss_pred cCCccccCChHHHHHHhcCCEEEEEEcCC-eEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEE
Q psy3154 5 QIPTISVKEPLDLIRLSLDERVHVKMRNE-RVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLF 83 (101)
Q Consensus 5 ~~~~~~~~~Pl~lL~~~l~k~V~V~l~~g-r~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~ 83 (101)
..+......|+++|+++++++|.|+|++| ++|+|+|.|||+|||++|+||.|++. + ...+.+|.+|
T Consensus 13 ~~~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-----~--------~~~~~lg~v~ 79 (93)
T 1n9r_A 13 DISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-----G--------VSHGTLGEIF 79 (93)
T ss_dssp -------------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-----T--------EEEEECCSEE
T ss_pred cccccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-----C--------CeEeEcCEEE
Confidence 34556678999999999999999999999 99999999999999999999999863 1 2468999999
Q ss_pred EcCCeEEEEecCC
Q psy3154 84 VRGDGVILVSPPN 96 (101)
Q Consensus 84 IRG~~Iv~I~~~~ 96 (101)
|||++|++|.+++
T Consensus 80 IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 80 IRCNNVLYIRELP 92 (93)
T ss_dssp ECGGGEEEEEECC
T ss_pred EcCCeEEEEEeCC
Confidence 9999999999876
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.90 E-value=5.9e-24 Score=131.23 Aligned_cols=72 Identities=22% Similarity=0.491 Sum_probs=52.8
Q ss_pred ChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEE
Q psy3154 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92 (101)
Q Consensus 13 ~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I 92 (101)
.|-++|+++++++|+|+|+|||+|+|+|.|||+|||++|+||.|++.. ...+.+|.++|||++|++|
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~-------------~~~~~lg~v~iRG~~I~~i 70 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------------GQQNNIGMVVIRGNSIIML 70 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-----------------CBSSEEECSSSEEEE
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC-------------CcEeEcCEEEECCCeEEEE
Confidence 367899999999999999999999999999999999999999998642 1367899999999999999
Q ss_pred ecCCC
Q psy3154 93 SPPNR 97 (101)
Q Consensus 93 ~~~~~ 97 (101)
++.|.
T Consensus 71 ~~~d~ 75 (76)
T 3s6n_G 71 EALER 75 (76)
T ss_dssp EC---
T ss_pred EeccC
Confidence 99874
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.90 E-value=3.4e-24 Score=136.95 Aligned_cols=76 Identities=21% Similarity=0.462 Sum_probs=66.9
Q ss_pred cccCChHHHHHHhcCCEEEEEE----cCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEE
Q psy3154 9 ISVKEPLDLIRLSLDERVHVKM----RNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFV 84 (101)
Q Consensus 9 ~~~~~Pl~lL~~~l~k~V~V~l----~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~I 84 (101)
..+..|+++|.++++++|+|++ ++||+|+|+|.|||+|||++|+||.|++.. + ...+.+|.+||
T Consensus 12 ~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~--------~~~~~lg~v~i 79 (92)
T 3s6n_E 12 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----T--------KSRKQLGRIML 79 (92)
T ss_dssp --CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----S--------CCEEEEEEEEE
T ss_pred eeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----C--------CceeEcCeEEE
Confidence 3488999999999999999998 999999999999999999999999998742 1 24688999999
Q ss_pred cCCeEEEEecCC
Q psy3154 85 RGDGVILVSPPN 96 (101)
Q Consensus 85 RG~~Iv~I~~~~ 96 (101)
||+||++|++.|
T Consensus 80 RG~nV~~i~~~~ 91 (92)
T 3s6n_E 80 KGDNITLLQSVS 91 (92)
T ss_dssp CGGGEEEEEEC-
T ss_pred eCCEEEEEEeCC
Confidence 999999999875
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.4e-23 Score=135.88 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=54.7
Q ss_pred cCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEE
Q psy3154 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVI 90 (101)
Q Consensus 11 ~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv 90 (101)
...|+++|+++++++|.|+|++|++|+|+|.|||+|||++|+||.|++. ++ ...+.+|.+||||++|+
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~----dg--------~~~~~lg~v~IRG~nI~ 81 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMP----DG--------DKFFRLPECYIRGNNIK 81 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT----TS--------CEEEEEEEEEECGGGEE
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEcc----CC--------ceeeEcCeEEEeCCeEE
Confidence 4678999999999999999999999999999999999999999999753 11 24678999999999999
Q ss_pred EEecCCC
Q psy3154 91 LVSPPNR 97 (101)
Q Consensus 91 ~I~~~~~ 97 (101)
+|.++|.
T Consensus 82 ~I~~pd~ 88 (105)
T 4emh_A 82 YLRIQDE 88 (105)
T ss_dssp EEEC---
T ss_pred EEecCHH
Confidence 9999975
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.88 E-value=1.6e-22 Score=146.90 Aligned_cols=84 Identities=18% Similarity=0.391 Sum_probs=69.5
Q ss_pred CChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEE
Q psy3154 12 KEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVIL 91 (101)
Q Consensus 12 ~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 91 (101)
.++-..|.++++++|+|+|+|||+|+|+|+|||+||||+|+||+|++...+++. +.......|++|++||||+||++
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~---k~~~~~~~R~LGlV~IRGdnIV~ 79 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS---KQAEREEKRVLGLVLLRGENLVS 79 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCccc---ccccccceeEeceEEECCCcEEE
Confidence 356778899999999999999999999999999999999999999986432221 11123578999999999999999
Q ss_pred EecCCCC
Q psy3154 92 VSPPNRT 98 (101)
Q Consensus 92 I~~~~~~ 98 (101)
|+..+..
T Consensus 80 Isve~pP 86 (231)
T 3pgw_B 80 MTVEGPP 86 (231)
T ss_pred EEecCCC
Confidence 9987543
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.88 E-value=1e-22 Score=135.29 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=66.1
Q ss_pred ChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEE
Q psy3154 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92 (101)
Q Consensus 13 ~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I 92 (101)
.|+++|+++++++|.|+|++|++|.|+|.+||+||||+|+||+|+.. + ...+.+|.+||||+||++|
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~----~---------~~~~~lg~v~IRG~nI~~I 68 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLK----N---------REPVQLETLSIRGNNIRYF 68 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECT----T---------SCCEEEEEEEECGGGEEEE
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecC----C---------CceeEcceEEEcCCeEEEE
Confidence 59999999999999999999999999999999999999999999752 1 1357899999999999999
Q ss_pred ecCCC
Q psy3154 93 SPPNR 97 (101)
Q Consensus 93 ~~~~~ 97 (101)
.++|.
T Consensus 69 ~~pd~ 73 (119)
T 1b34_A 69 ILPDS 73 (119)
T ss_dssp ECCTT
T ss_pred Eeccc
Confidence 99987
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.87 E-value=3.1e-22 Score=134.31 Aligned_cols=75 Identities=19% Similarity=0.367 Sum_probs=66.9
Q ss_pred ccCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 10 ~~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
+...|+++|+++++++|.|+|++|++|+|+|.+||.|||++|+||.|+.. ++ ...+++.+||||++|
T Consensus 2 ~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~----~g---------~~~~l~~v~IRGnnI 68 (126)
T 2y9a_D 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DG---------RVAQLEQVYIRGSKI 68 (126)
T ss_dssp --CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECT----TS---------CCEEEEEEEECGGGE
T ss_pred CcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcC----CC---------cEeecccEEEeCCEE
Confidence 46789999999999999999999999999999999999999999999752 11 367899999999999
Q ss_pred EEEecCCC
Q psy3154 90 ILVSPPNR 97 (101)
Q Consensus 90 v~I~~~~~ 97 (101)
.+|.++|.
T Consensus 69 ~~I~lpd~ 76 (126)
T 2y9a_D 69 RFLILPDM 76 (126)
T ss_dssp EEEECCSS
T ss_pred EEEEcccc
Confidence 99999875
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=2.2e-20 Score=125.83 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=61.5
Q ss_pred HHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEEec
Q psy3154 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94 (101)
Q Consensus 15 l~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 94 (101)
.++|+++++++|.|+|++|++|.|+|.|||+|||++|+||.|+. .+.+|.+||||++|++|.+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~-----------------~~~lg~v~IRG~nI~~I~~ 64 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA-----------------GEKFNRVFIMYRYIVHIDS 64 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT-----------------CCEEEEEEECGGGEEEEEE
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc-----------------CCEeceEEEeCCeEEEEEc
Confidence 57899999999999999999999999999999999999999851 2578999999999999999
Q ss_pred CCCC
Q psy3154 95 PNRT 98 (101)
Q Consensus 95 ~~~~ 98 (101)
+|..
T Consensus 65 ~d~~ 68 (130)
T 1m5q_A 65 TERR 68 (130)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9864
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=68.10 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=56.5
Q ss_pred cCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEc-CCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYD-QHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 11 ~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D-~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
..+|++ |..+++|+|.|+|.||++|.|.|.+|| ...|++|.|+.+ ......++|.|+.|
T Consensus 6 ~~~p~e-l~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~-------------------~~~~~~~iI~G~aI 65 (86)
T 1y96_A 6 KKGPLE-WQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE-------------------DGSMSVTGIMGHAV 65 (86)
T ss_dssp HSCHHH-HHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT-------------------TSCEEEEEECGGGE
T ss_pred hCCHHH-HHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc-------------------CCeEEEEEEecceE
Confidence 456775 566699999999999999999999999 999999999811 12367899999999
Q ss_pred EEEecCCCC
Q psy3154 90 ILVSPPNRT 98 (101)
Q Consensus 90 v~I~~~~~~ 98 (101)
..|...++.
T Consensus 66 ~eI~v~~~~ 74 (86)
T 1y96_A 66 QTVETMNEG 74 (86)
T ss_dssp EEEEEEECC
T ss_pred EEEEEecch
Confidence 999876554
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.44 E-value=0.00084 Score=41.95 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=59.0
Q ss_pred HhcCCEEEEEEcCCeEEEEEEEEEc-CCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEEecCCCC
Q psy3154 20 LSLDERVHVKMRNERVLRGKLHAYD-QHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRT 98 (101)
Q Consensus 20 ~~l~k~V~V~l~~gr~i~G~L~~~D-~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~~~~ 98 (101)
.++|+++.+..+.+-.|.|+|..+| +..-+.|+||..+-++-... .........-+..++.||+.|--+...+.+
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~----~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDT----QFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCC----SSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCC----CcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 3599999999999999999999999 66779999999876642211 111223445578899999999999988776
Q ss_pred C
Q psy3154 99 P 99 (101)
Q Consensus 99 ~ 99 (101)
|
T Consensus 86 p 86 (88)
T 2vxe_A 86 T 86 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.15 E-value=0.0009 Score=40.57 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=29.9
Q ss_pred HHHHHhc--CCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 16 DLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 16 ~lL~~~l--~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
.+|+.+. ..+|.|.|.+|..+.|++.+||+|+ +.|.+
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 3555554 5799999999999999999999999 44443
No 28
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.01 E-value=0.0018 Score=39.95 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceE
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMV 50 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlv 50 (101)
-+.+|.|-|.+|-.+.|.+.+||+|+=++
T Consensus 18 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL 46 (82)
T 1u1s_A 18 ERVPVSIYLVNGIKLQGQIESFDQFVILL 46 (82)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEE
Confidence 45799999999999999999999999444
No 29
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.84 E-value=0.0032 Score=38.61 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceE
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMV 50 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlv 50 (101)
-..+|.|.|.+|-.+.|++.+||+|+=++
T Consensus 19 ~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 19 EHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 34689999999999999999999999443
No 30
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.83 E-value=0.0029 Score=39.97 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=57.1
Q ss_pred hHHHHHHhcCCEEEEEEcCCeEEEEEEEEEc-CCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEE
Q psy3154 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYD-QHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILV 92 (101)
Q Consensus 14 Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D-~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I 92 (101)
|-..-..++|+++.+..+.+-.|.|+|..+| +..-+.|+||..+-++-.... ........-+..++.||+.|--+
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~----~~ipp~~~vyeyIvFrGsDIKDL 85 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTD----RPIAPRDETFEYIIFRGSDIKDL 85 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCS----SCCCSCCCCSSCEEECSTTEEEE
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCC----CccCCCCcceeEEEEcCCCcceE
Confidence 3344456799999999999999999999999 667799999987766422111 11223455678999999999988
Q ss_pred ecCCC
Q psy3154 93 SPPNR 97 (101)
Q Consensus 93 ~~~~~ 97 (101)
...+-
T Consensus 86 ~V~e~ 90 (95)
T 2fb7_A 86 TVCEP 90 (95)
T ss_dssp EESCC
T ss_pred EEecC
Confidence 87653
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.70 E-value=0.004 Score=39.97 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=28.1
Q ss_pred HHHHhc--CCEEEEEEcCCeEEEEEEEEEcCCCceEe
Q psy3154 17 LIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVL 51 (101)
Q Consensus 17 lL~~~l--~k~V~V~l~~gr~i~G~L~~~D~~mNlvL 51 (101)
+|+.+. ..+|.|.|.+|-.++|++.+||+|+=++-
T Consensus 13 fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 444443 45999999999999999999999994443
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.67 E-value=0.0044 Score=37.74 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHhc--CCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 17 LIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 17 lL~~~l--~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|+.+. ..+|.|.|.+|-.+.|++.+||+|+=++-.+
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 444443 5799999999999999999999999555434
No 33
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=96.66 E-value=0.01 Score=35.01 Aligned_cols=61 Identities=13% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeEEEEec
Q psy3154 16 DLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSP 94 (101)
Q Consensus 16 ~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 94 (101)
..|++|.|++|-+...+...|+|+|.-||... +.|+|+..+.- ++-..++++=+.|-.|.+
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G-----------------Nk~k~liv~idDinWimL 69 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG-----------------NRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE-----------------EEEEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc-----------------cccceeEEEeccceEEEe
Confidence 46788999999999999999999999999987 88899987532 223345666666666554
No 34
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.52 E-value=0.0045 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=27.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
-+.+|.|-|.+|-.+.|.+.+||+|+=++-.+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 45799999999999999999999999554333
No 35
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.49 E-value=0.006 Score=37.26 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 23 DERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 23 ~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+.+|.|-|.+|..+.|.+.+||+|+=++-.+
T Consensus 23 ~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 23 NTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 5799999999999999999999999554433
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.08 E-value=0.027 Score=34.84 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCChHHHHHHhcCCEEEEEEcCCeEEEEEEEEEc-CCCceEecceEEEEeecccCcchhhhhcceeeeeeCeEEEcCCeE
Q psy3154 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYD-QHLNMVLGDVEETVTTVEIDEETYEEIYKTTKRSIPMLFVRGDGV 89 (101)
Q Consensus 11 ~~~Pl~lL~~~l~k~V~V~l~~gr~i~G~L~~~D-~~mNlvL~~~~E~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~~I 89 (101)
.+..+.+|....+++|.+.+.++-++.|++.++| ...|+..++-. + + --.++..++|+..|
T Consensus 17 ReRfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~---T-----P----------iGv~~eAlLR~~Di 78 (85)
T 1y96_B 17 RERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ---T-----P----------IGVQAEALLRCSDI 78 (85)
T ss_dssp HHHHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC---C-----T----------TCCEEEEEEEGGGE
T ss_pred HHHHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC---C-----C----------cccchhhhhhcCCE
Confidence 3455777888889999999999999999999999 66777766532 1 1 12377899999999
Q ss_pred EEEec
Q psy3154 90 ILVSP 94 (101)
Q Consensus 90 v~I~~ 94 (101)
++++.
T Consensus 79 i~~sF 83 (85)
T 1y96_B 79 ISYTF 83 (85)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99875
No 37
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.29 E-value=0.032 Score=36.77 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=32.1
Q ss_pred HHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEe--cceEEE
Q psy3154 18 IRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL--GDVEET 57 (101)
Q Consensus 18 L~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL--~~~~E~ 57 (101)
...++|..|.|+|+||..++|++..+|. -+|.| ++|...
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s 47 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS 47 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc
Confidence 3467999999999999999999999984 45777 877543
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.88 E-value=0.073 Score=31.75 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred cCCh-HHHHHHhcC--CEEEEEEcCCeEEEEEEEEEcCCCceE
Q psy3154 11 VKEP-LDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMV 50 (101)
Q Consensus 11 ~~~P-l~lL~~~l~--k~V~V~l~~gr~i~G~L~~~D~~mNlv 50 (101)
...| ...|+.++. ..|.|.|.+|..+.|++.-+|.|+=++
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L 48 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGL 48 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEE
Confidence 3455 678888875 699999999999999999999998444
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.11 E-value=0.15 Score=30.48 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=34.2
Q ss_pred CCh-HHHHHHhcC--CEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 12 KEP-LDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 12 ~~P-l~lL~~~l~--k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
..| ...|+.++. ..|.|.|.+|..++|++.-+|.++ +.|.+
T Consensus 9 ~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~ 52 (72)
T 3hfn_A 9 SLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIAD 52 (72)
T ss_dssp CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC
T ss_pred CCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEc
Confidence 445 778899886 699999999999999999999998 44443
No 40
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.67 E-value=0.13 Score=31.66 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHhcCCEEEEEEcCCe-EEEEEEEEEcCC-CceEecceE
Q psy3154 19 RLSLDERVHVKMRNER-VLRGKLHAYDQH-LNMVLGDVE 55 (101)
Q Consensus 19 ~~~l~k~V~V~l~~gr-~i~G~L~~~D~~-mNlvL~~~~ 55 (101)
.+|+|+.|.+..+++- .|+|.|..+|.. -|+.|.++.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 4789999999999998 999999999965 689999994
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.92 E-value=0.33 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
+|++|++.+.++..+.|+..|+|....|+++..
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 578999998889999999999999999999753
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=88.73 E-value=0.45 Score=32.25 Aligned_cols=41 Identities=20% Similarity=0.478 Sum_probs=29.3
Q ss_pred ccCChHHHH---HHhcCCEEEEEE----cCCeEEEEEEEEEcCCCceEe
Q psy3154 10 SVKEPLDLI---RLSLDERVHVKM----RNERVLRGKLHAYDQHLNMVL 51 (101)
Q Consensus 10 ~~~~Pl~lL---~~~l~k~V~V~l----~~gr~i~G~L~~~D~~mNlvL 51 (101)
....||.-. .+++|+.|.|++ .+.+.+.|+|.++|.-. +.|
T Consensus 88 GldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 88 GLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp SSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred CCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 345554333 355999999999 44589999999999753 444
No 43
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=86.12 E-value=2.2 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=31.9
Q ss_pred HhcCCEEEEEEcCCe-EEEEEEEEEcCCCceEecceEE
Q psy3154 20 LSLDERVHVKMRNER-VLRGKLHAYDQHLNMVLGDVEE 56 (101)
Q Consensus 20 ~~l~k~V~V~l~~gr-~i~G~L~~~D~~mNlvL~~~~E 56 (101)
+|+|+-|.|.+.+.- .|+|.++.+|+ -++.|.++..
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 789999999999986 99999999996 3499988875
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=83.11 E-value=1 Score=31.75 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++...++ +.|+..|+|....|+++.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 578999976654 999999999999999975
No 45
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=82.27 E-value=2.6 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.7
Q ss_pred HhcC--CEEEEEEcCCeEEEEEE
Q psy3154 20 LSLD--ERVHVKMRNERVLRGKL 40 (101)
Q Consensus 20 ~~l~--k~V~V~l~~gr~i~G~L 40 (101)
..++ .+|++.|.||+.+.|++
T Consensus 23 ~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 23 KLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HTSCTTCEEEEEETTSCEEEEEE
T ss_pred HhhCCeeEEEEEEcCCCeEeeee
Confidence 3354 69999999999999985
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=79.74 E-value=2.7 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=27.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++...++..+.|+..|+|....|+ +.
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 67999999888877999999999999998 64
No 47
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=76.87 E-value=3.9 Score=29.92 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=27.1
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++... +..+.|+..|+|....|+++.
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 5799999875 558999999999999999975
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=76.15 E-value=2.2 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=23.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++...++ +.|+..++|....|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 689999988766 999999999999999975
No 49
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=72.04 E-value=7.8 Score=22.78 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceE-ecceEEEEee
Q psy3154 18 IRLSLDERVHVKMRNERVLRGKLHAYDQHLNMV-LGDVEETVTT 60 (101)
Q Consensus 18 L~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlv-L~~~~E~~~~ 60 (101)
....++.-|.++-+||+-|-|+++...+..=+| ..|-.+.|..
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 344578999999999999999996666444333 3555566654
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=71.77 E-value=4.6 Score=29.79 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=26.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++... +..+.|+..|+|....|+++.
T Consensus 278 ~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 278 WNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 5789999764 567999999999999999964
No 51
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=71.69 E-value=5.9 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCCceEecc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHLNMVLGD 53 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~ 53 (101)
+|++|++ ++ +.|+..|+|....|+++.
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 6789999 45 999999999999999975
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=62.02 E-value=13 Score=21.07 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCC---ceEecceEEEEe
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHL---NMVLGDVEETVT 59 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~m---NlvL~~~~E~~~ 59 (101)
.|.-|.+.-+||+-|-|++..+|+.- =+...|-.+.|.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 46789999999999999999998653 334455555554
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=51.28 E-value=22 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=27.4
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+.||+.+.+++.++|...+|.|-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3789999999999999999999999876654
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=50.85 E-value=23 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=27.6
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
.++.|.+.+|+.+.+++.++|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5899999999999999999999998877655
No 55
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=48.47 E-value=22 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYD 44 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D 44 (101)
+|.+|..+-++||.|.|++.+..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 78999999999999999998876
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.49 E-value=33 Score=19.84 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=27.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCC---CceEecceEEEEe
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQH---LNMVLGDVEETVT 59 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~---mNlvL~~~~E~~~ 59 (101)
.|.-|+..-.||+-|-|++..+++. +=+...|-.++|.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 5788999999999999999999974 2223344445443
No 57
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=44.36 E-value=35 Score=20.89 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHhcCCEEEEEEcCCe----EEEEEEEEE
Q psy3154 15 LDLIRLSLDERVHVKMRNER----VLRGKLHAY 43 (101)
Q Consensus 15 l~lL~~~l~k~V~V~l~~gr----~i~G~L~~~ 43 (101)
-.-|...+|++|.++.+.|| +-.|+|...
T Consensus 17 K~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 34577789999999999996 466988754
No 58
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=41.88 E-value=33 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=26.8
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
.++.|.+.+|+.+.+++.++|....|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4788999999999999999999988876544
No 59
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=38.66 E-value=30 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=27.1
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+.||+.+.+++.++|...+|-|=.+
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4788999999999999999999998876654
No 60
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=38.11 E-value=22 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceE
Q psy3154 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMV 50 (101)
Q Consensus 15 l~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlv 50 (101)
-+--..|+||+|....+.|+.+.|++.---..-.+|
T Consensus 32 ~~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvV 67 (87)
T 3j21_c 32 REEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAV 67 (87)
T ss_dssp HHHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCE
T ss_pred HHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeE
Confidence 344567899999999999999999987765554454
No 61
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=37.78 E-value=21 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=18.3
Q ss_pred hcCCEEEEEEcCCeEEEEEEEE
Q psy3154 21 SLDERVHVKMRNERVLRGKLHA 42 (101)
Q Consensus 21 ~l~k~V~V~l~~gr~i~G~L~~ 42 (101)
.+|..|+|.+.+|+.+.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 3678999999999999998654
No 62
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=36.81 E-value=41 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=26.1
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
.++.|.+.+|+.+.+.+.+.|....|.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4788999999999999999999888766544
No 63
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=34.00 E-value=30 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHhcCCEEEEEEcCCeEEEEEEEEEcCCCceEe
Q psy3154 16 DLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL 51 (101)
Q Consensus 16 ~lL~~~l~k~V~V~l~~gr~i~G~L~~~D~~mNlvL 51 (101)
+--..|+||+|...-+.+|.+.|++.---..-.+|-
T Consensus 33 ~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVr 68 (95)
T 1sqr_A 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVR 68 (95)
T ss_dssp HHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEE
T ss_pred HHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEE
Confidence 445677999999999999999999987665555553
No 64
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=33.69 E-value=55 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=27.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecceE
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE 55 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~ 55 (101)
..+.|.+.+|+.+.+++.++|...++-|=.+.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~ 97 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLIIK 97 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEEe
Confidence 46889999999999999999998888765543
No 65
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=33.63 E-value=62 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=26.6
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888776544
No 66
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=33.10 E-value=59 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=27.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecceE
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE 55 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~ 55 (101)
..+.|.+.+|+.+.+++.++|....|-|=...
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~ 102 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEEc
Confidence 57899999999999999999998887765543
No 67
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=32.65 E-value=66 Score=21.91 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=27.2
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecceE
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE 55 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~ 55 (101)
..+.|.+.+|+.+.+.+.++|....|-|=...
T Consensus 87 ~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 87 HRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred ceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 58899999999999999999998887765443
No 68
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=32.47 E-value=23 Score=21.24 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHhcCCEEEEEEcCCeEEEEEEEEEcCCC---ceEecceEEEEe
Q psy3154 19 RLSLDERVHVKMRNERVLRGKLHAYDQHL---NMVLGDVEETVT 59 (101)
Q Consensus 19 ~~~l~k~V~V~l~~gr~i~G~L~~~D~~m---NlvL~~~~E~~~ 59 (101)
+...|.-|.++-+||+-|-|+++-+|..- =+...|-.+.|.
T Consensus 26 ~f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CCCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 44578999999999999999999988643 234455555554
No 69
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=31.38 E-value=39 Score=24.33 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=17.1
Q ss_pred CeEEEEEEEEEcCCCceEec
Q psy3154 33 ERVLRGKLHAYDQHLNMVLG 52 (101)
Q Consensus 33 gr~i~G~L~~~D~~mNlvL~ 52 (101)
+..+.|.+.-+|.|.|++.+
T Consensus 171 ~~~i~g~V~~iD~FGN~iTn 190 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILN 190 (259)
T ss_dssp TTEEEEEEEEECTTCCEEES
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999854
No 70
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=31.36 E-value=58 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=27.2
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecceE
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDVE 55 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~~ 55 (101)
..+.|.+.+|+.+.+++.++|...+|-|=...
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 48999999999999999999998888765443
No 71
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=30.23 E-value=42 Score=24.22 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.1
Q ss_pred CeEEEEEEEEEcCCCceEec
Q psy3154 33 ERVLRGKLHAYDQHLNMVLG 52 (101)
Q Consensus 33 gr~i~G~L~~~D~~mNlvL~ 52 (101)
+..+.|.+.-+|.|.|++.+
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999854
No 72
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=29.84 E-value=18 Score=21.84 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=15.3
Q ss_pred CCEEEEEEcCCeEEEEE
Q psy3154 23 DERVHVKMRNERVLRGK 39 (101)
Q Consensus 23 ~k~V~V~l~~gr~i~G~ 39 (101)
+.++.|+++||..+.|+
T Consensus 25 ~~~l~l~l~dGe~~~g~ 41 (86)
T 1sg5_A 25 HLMLTLELKDGEKLQAK 41 (86)
T ss_dssp TTCEEEECTTTCCEEES
T ss_pred CCeEEEEEeCCCEEEEE
Confidence 57999999999999986
No 73
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.99 E-value=3.5 Score=25.93 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=16.3
Q ss_pred EEEEEEcCCCceEecceE
Q psy3154 38 GKLHAYDQHLNMVLGDVE 55 (101)
Q Consensus 38 G~L~~~D~~mNlvL~~~~ 55 (101)
|++.+||+-.|+.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 568999999999999986
No 74
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=28.31 E-value=37 Score=19.62 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=17.9
Q ss_pred CEEEEEEcCCeEEEEEEEEEcC
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQ 45 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~ 45 (101)
.+|+|++.||+.+++++..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 3789999999999999776553
No 75
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=26.76 E-value=61 Score=25.70 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=25.9
Q ss_pred CEEEEEEc-CCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMR-NERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~-~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|++. ||+.|.+++.++|....|-|=.+
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv 128 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEEE
Confidence 47888885 89999999999999988876543
No 76
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=26.32 E-value=48 Score=24.52 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=18.3
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEE
Q psy3154 21 SLDERVHVKMRNERVLRGKLHAY 43 (101)
Q Consensus 21 ~l~k~V~V~l~~gr~i~G~L~~~ 43 (101)
+.+++|+|..++|+.|.|++-.-
T Consensus 97 ~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 97 VSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp CSSCEEEEECTTSCEEEEEEC--
T ss_pred cCCCEEEEEcCCCCEEEEEEeCc
Confidence 46789999999999999987543
No 77
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=26.19 E-value=1.1e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.8
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 5789999999999999999999888776544
No 78
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=25.78 E-value=81 Score=22.86 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5789999999999999999999888776544
No 79
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=25.62 E-value=50 Score=24.18 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.4
Q ss_pred hcCCEEEEE-EcCCeEEEEEEE
Q psy3154 21 SLDERVHVK-MRNERVLRGKLH 41 (101)
Q Consensus 21 ~l~k~V~V~-l~~gr~i~G~L~ 41 (101)
.+|..|+|+ +.+|+.+.|++.
T Consensus 238 a~Gd~IRVrNl~SgkiV~G~V~ 259 (278)
T 3frn_A 238 YLGETVRAMNVESRKYVFGRVE 259 (278)
T ss_dssp CTTCEEEEEC--CCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEe
Confidence 467899999 999999999865
No 80
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=24.95 E-value=92 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.6
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEc
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYD 44 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D 44 (101)
.|..|.|.-.||..|.|++.|.-
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 57899999999999999998874
No 81
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=21.63 E-value=74 Score=19.46 Aligned_cols=21 Identities=5% Similarity=0.264 Sum_probs=17.4
Q ss_pred CEEEEEEcCCeEEEEEEEEEc
Q psy3154 24 ERVHVKMRNERVLRGKLHAYD 44 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D 44 (101)
.+++|+|-||+.+++++..-|
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 489999999999999976533
No 82
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.59 E-value=1.3e+02 Score=17.41 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCCC---ceEecceEEEEe
Q psy3154 22 LDERVHVKMRNERVLRGKLHAYDQHL---NMVLGDVEETVT 59 (101)
Q Consensus 22 l~k~V~V~l~~gr~i~G~L~~~D~~m---NlvL~~~~E~~~ 59 (101)
.|.-|...-+||+-|-|+++-+|.+- =+...|-.++|.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv 52 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 52 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeee
Confidence 56789999999999999999999543 234466666654
No 83
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=21.14 E-value=52 Score=23.66 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.5
Q ss_pred EEEEEEEEcCCCceEec
Q psy3154 36 LRGKLHAYDQHLNMVLG 52 (101)
Q Consensus 36 i~G~L~~~D~~mNlvL~ 52 (101)
+.|.+.-+|.|.|++.+
T Consensus 174 i~g~V~~iD~FGN~iTn 190 (255)
T 2cw5_A 174 PEGEVLTFDRFGNAITT 190 (255)
T ss_dssp SEEEEEEECTTCCEEES
T ss_pred cEEEEEEEcccCCceec
Confidence 88999999999999854
No 84
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=20.82 E-value=1.8e+02 Score=18.84 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=22.6
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCCCceEecce
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQHLNMVLGDV 54 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~~mNlvL~~~ 54 (101)
..+.|.+ +|+.+.+++. +|....|-|=.+
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv 71 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFITC 71 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEEEC
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEEEe
Confidence 5778888 9999999999 887766655433
No 85
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=20.59 E-value=99 Score=18.21 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=19.4
Q ss_pred CEEEEEEcCCeEEEEEEEEEcC
Q psy3154 24 ERVHVKMRNERVLRGKLHAYDQ 45 (101)
Q Consensus 24 k~V~V~l~~gr~i~G~L~~~D~ 45 (101)
..|+|.++++..+.|.+..|..
T Consensus 75 ~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 75 YTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp EEEEEEEETTEEEEEEEECCCT
T ss_pred EEEEEEEeCCEEEEEEcccccc
Confidence 4899999999999999988764
Done!