Your job contains 1 sequence.
>psy3154
MEDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTT
VEIDEETYEEIYKTTKRSIPMLFVRGDGVILVSPPNRTPAL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3154
(101 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 276 4.2e-24 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 275 5.3e-24 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 275 5.3e-24 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 275 5.3e-24 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 275 5.3e-24 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 275 5.3e-24 1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 269 2.3e-23 1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 255 7.0e-22 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 252 1.5e-21 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 248 3.9e-21 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 239 3.5e-20 1
POMBASE|SPBC9B6.05c - symbol:lsm3 "U6 snRNP-associated pr... 211 3.2e-17 1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme... 192 3.3e-15 1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot... 172 4.4e-13 1
GENEDB_PFALCIPARUM|PF08_0049 - symbol:PF08_0049 "ribonucl... 148 1.5e-10 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 141 8.4e-10 1
SGD|S000004265 - symbol:SMD2 "Core Sm protein Sm D2" spec... 65 1.8e-05 2
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 71 4.5e-05 2
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 71 4.5e-05 2
POMBASE|SPAC2C4.03c - symbol:smd2 "Sm snRNP core protein ... 93 0.00010 1
DICTYBASE|DDB_G0285395 - symbol:snrpD2 "putative small nu... 90 0.00021 1
UNIPROTKB|G4NGW0 - symbol:MGG_04013 "Small nuclear ribonu... 90 0.00021 1
TAIR|locus:2043323 - symbol:AT2G47640 "AT2G47640" species... 90 0.00021 1
TAIR|locus:2081685 - symbol:AT3G62840 "AT3G62840" species... 90 0.00021 1
WB|WBGene00004917 - symbol:snr-4 species:6239 "Caenorhabd... 88 0.00035 1
UNIPROTKB|Q18786 - symbol:snr-4 "Probable small nuclear r... 88 0.00035 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 58 0.00062 2
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 59/98 (60%), Positives = 66/98 (67%)
Query: 2 EDEQIPTI--SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXX 59
E EQ+ + VKEPLDLIRLSLDE+V+VKMRNER LRG+LHA+DQHLNMVLG
Sbjct: 4 ETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 63
Query: 60 XXXXXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGVILVSPP R
Sbjct: 64 TVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMR 101
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXX 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 XXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXX 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 XXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXX 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 XXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXX 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 XXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 3 DEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXX 62
D+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 6 DQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Query: 63 XXXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 66 IDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 4 EQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXX 63
+Q T +V+EPLDLIRLSLDER++VKMRN+R LRG+LHAYDQHLNM+LG
Sbjct: 1 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 60
Query: 64 XXXXXXXXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R+IPMLFVRGDGV+LV+PP R
Sbjct: 61 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 94
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/91 (57%), Positives = 62/91 (68%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXX 69
+V+EPLDLIRLSLDER++VK+R++R LRGKLHA+DQHLNM+LG
Sbjct: 8 TVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYE 67
Query: 70 XXXXXXXRSIPMLFVRGDGVILVSPPNRTPA 100
R+I LFVRGDGVILVSPP RT A
Sbjct: 68 EIVRTTKRTIEFLFVRGDGVILVSPPLRTAA 98
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 49/89 (55%), Positives = 62/89 (69%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXX 69
+V+EPLDLIRLS++ER++VK+R++R LRGKLHA+DQHLNM+LG
Sbjct: 8 TVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYE 67
Query: 70 XXXXXXXRSIPMLFVRGDGVILVSPPNRT 98
R++P LFVRGDGVILVSPP RT
Sbjct: 68 EIVRTTKRTVPFLFVRGDGVILVSPPLRT 96
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 52/89 (58%), Positives = 59/89 (66%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXX 69
+V+EPLDLIRLSLDER+ VKMR +R LRGKLHAYDQHLNM+L
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 70 XXXXXXXRSIPMLFVRGDGVILVSPPNRT 98
R+I MLFVRGDGVIL+SPP RT
Sbjct: 68 EIIRNIKRNIKMLFVRGDGVILISPPLRT 96
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 50/88 (56%), Positives = 58/88 (65%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXX 69
+V+EPLDL+RLSLDERV+VKMRN+R LRG+L A+DQHLNMVL
Sbjct: 13 TVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFE 72
Query: 70 XXXXXXXRSIPMLFVRGDGVILVSPPNR 97
R +PMLFVRGD VILVSPP R
Sbjct: 73 EIYKQTKRVVPMLFVRGDSVILVSPPIR 100
>POMBASE|SPBC9B6.05c [details] [associations]
symbol:lsm3 "U6 snRNP-associated protein Lsm3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] PomBase:SPBC9B6.05c
INTERPRO:IPR001163 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0006402
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540
GO:GO:0045292 KO:K12622 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223550 OMA:MVFVRGD PIR:T40786 RefSeq:NP_595747.1
PDB:4EMG PDBsum:4EMG ProteinModelPortal:Q9Y7M4 IntAct:Q9Y7M4
STRING:Q9Y7M4 EnsemblFungi:SPBC9B6.05c.1 GeneID:2540212
KEGG:spo:SPBC9B6.05c OrthoDB:EOG4JQ77D NextBio:20801344
Uniprot:Q9Y7M4
Length = 93
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 43/86 (50%), Positives = 53/86 (61%)
Query: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXX 69
+V EPLDL+RLSLDE V+VK+R +R L G+LHAYD+HLNMVLG
Sbjct: 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD 65
Query: 70 XXXXXXXRSIPMLFVRGDGVILVSPP 95
+ MLFVRGD VIL++PP
Sbjct: 66 KALKTIRKHYEMLFVRGDSVILIAPP 91
>ASPGD|ASPL0000060673 [details] [associations]
symbol:AN10007 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
Uniprot:C8VRD4
Length = 96
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 43/93 (46%), Positives = 53/93 (56%)
Query: 2 EDEQIPTISVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXX 61
+ E T SV EPLDL+RLSLDE V VK+R +R L+G+LHAYD H N+VLG
Sbjct: 3 DTEGAGTSSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
Query: 62 XXXXXXXXXXXXXXXRSIPMLFVRGDGVILVSP 94
+ MLFVRGD V+L+SP
Sbjct: 63 EEDENEQEHIRTIKKQE-EMLFVRGDSVVLISP 94
>UNIPROTKB|G4N3U5 [details] [associations]
symbol:MGG_16841 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
KEGG:mgr:MGG_16841 Uniprot:G4N3U5
Length = 95
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 37/88 (42%), Positives = 49/88 (55%)
Query: 13 EPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXXXXX 72
EP L+RL LDE V VK+R +R L+G+LHAYD H N+VLG
Sbjct: 11 EPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTV 70
Query: 73 XXXXRSIPMLFVRGDGVILVSPPNRTPA 100
R + MLFVRGD V+++SP ++ A
Sbjct: 71 S---RKLEMLFVRGDSVVMISPSDQVAA 95
>GENEDB_PFALCIPARUM|PF08_0049 [details] [associations]
symbol:PF08_0049 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223550 RefSeq:XP_002808862.1
ProteinModelPortal:C0H4W2 PRIDE:C0H4W2
EnsemblProtists:PF08_0049:mRNA GeneID:2655500 KEGG:pfa:PF08_0049
EuPathDB:PlasmoDB:PF3D7_0819900 ProtClustDB:CLSZ2444967
Uniprot:C0H4W2
Length = 91
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXXX 70
++ PLD IRL+++E + +K + +R L GKL AYD HLNM+L
Sbjct: 7 IQNPLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETV 66
Query: 71 XXXXXXRSIPMLFVRGDGVILVS 93
R++ M+FVRGD +ILVS
Sbjct: 67 KKME--RNLDMVFVRGDSIILVS 87
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 11 VKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXXX 70
++ PLDL++L+LDERV++K+R R L G L A+D H N+VL
Sbjct: 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE 60
Query: 71 XXXXXXRSIPMLFVRGDGVILVSPPN 96
R M+F+RGD V L+S P+
Sbjct: 61 ------RRCEMVFIRGDTVTLISTPS 80
>SGD|S000004265 [details] [associations]
symbol:SMD2 "Core Sm protein Sm D2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IPI] InterPro:IPR027248
SGD:S000004265 INTERPRO:IPR001163 GO:GO:0005682 EMBL:BK006945
GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 EMBL:U17245 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 OMA:VKELWTE OrthoDB:EOG43247T
PIR:S69326 RefSeq:NP_013377.1 ProteinModelPortal:Q06217 SMR:Q06217
DIP:DIP-1421N IntAct:Q06217 MINT:MINT-368970 STRING:Q06217
PaxDb:Q06217 PRIDE:Q06217 EnsemblFungi:YLR275W GeneID:850981
KEGG:sce:YLR275W CYGD:YLR275w NextBio:967495 Genevestigator:Q06217
GermOnline:YLR275W Uniprot:Q06217
Length = 110
Score = 65 (27.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 2 EDEQIPTISVKE-PLDLIRLSLDER--VHVKMRNERVLRGKLHAYDQHLNMVL 51
E E++ K P+ LI ++ R V + +RN + ++ A+D+H NMVL
Sbjct: 17 ELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVL 69
Score = 46 (21.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 77 RSIPMLFVRGDGVILV 92
R I LF+RGD VI+V
Sbjct: 89 RFISKLFLRGDSVIVV 104
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 71 (30.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL 51
+DL R LD+ + VK + R G L +DQ LNMVL
Sbjct: 14 VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVL 49
Score = 36 (17.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 77 RSIPMLFVRGDGVILVSP 94
R + ++ RG + +VSP
Sbjct: 70 RQLGLIVARGTAITVVSP 87
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 71 (30.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL 51
+DL R LD+ + VK + R G L +DQ LNMVL
Sbjct: 14 VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVL 49
Score = 36 (17.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 77 RSIPMLFVRGDGVILVSP 94
R + ++ RG + +VSP
Sbjct: 70 RQLGLIVARGTAITVVSP 87
>POMBASE|SPAC2C4.03c [details] [associations]
symbol:smd2 "Sm snRNP core protein Smd2" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR027248 PomBase:SPAC2C4.03c
INTERPRO:IPR001163 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 GO:GO:0000395 HOGENOM:HOG000223545 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE PIR:T38514 RefSeq:NP_594506.1
ProteinModelPortal:O14036 SMR:O14036 IntAct:O14036 STRING:O14036
EnsemblFungi:SPAC2C4.03c.1 GeneID:2542480 KEGG:spo:SPAC2C4.03c
OrthoDB:EOG43247T NextBio:20803535 Uniprot:O14036
Length = 115
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 14 PLDLIRLSLD--ERVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXXXX 71
PL +++ ++ ++V + RN + L ++ A+D+H NMVL
Sbjct: 29 PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88
Query: 72 XXXXXRSIPMLFVRGDGVILV 92
R I +F+RGDGV+LV
Sbjct: 89 AINKDRFISKMFLRGDGVVLV 109
>DICTYBASE|DDB_G0285395 [details] [associations]
symbol:snrpD2 "putative small nuclear
ribonucleoprotein D2" species:44689 "Dictyostelium discoideum"
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR027248 dictyBase:DDB_G0285395 INTERPRO:IPR001163
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE RefSeq:XP_638255.1 HSSP:P62316
ProteinModelPortal:Q54NC5 SMR:Q54NC5 STRING:Q54NC5
EnsemblProtists:DDB0233193 GeneID:8625063 KEGG:ddi:DDB_G0285395
Uniprot:Q54NC5
Length = 112
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 1 MEDEQIPTISVKEPLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVL-GXXXXX 57
MED+ P S PL ++ S++ +V + +RN + L G++ A+D+H NMVL
Sbjct: 9 MEDK--PDDS-NGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIW 65
Query: 58 XXXXXXXXXXXXXXXXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 66 TEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILV 100
>UNIPROTKB|G4NGW0 [details] [associations]
symbol:MGG_04013 "Small nuclear ribonucleoprotein Sm D2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 EMBL:CM001236
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11096 PANTHER:PTHR12777 RefSeq:XP_003719837.1
ProteinModelPortal:G4NGW0 SMR:G4NGW0 EnsemblFungi:MGG_04013T0
GeneID:2677446 KEGG:mgr:MGG_04013 Uniprot:G4NGW0
Length = 117
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 14 PLDLIRLSLDE--RVHVKMRNERVLRGKLHAYDQHLNMVLGXXXXXXXXXXXXXXXXXXX 71
PL +++ ++ +V + +RN R L ++ A+D+H NMVL
Sbjct: 34 PLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASGKKGR 93
Query: 72 XXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 94 PVNKDRFISKMFLRGDSVILV 114
>TAIR|locus:2043323 [details] [associations]
symbol:AT2G47640 "AT2G47640" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CP002686 EMBL:CP002685 GO:GO:0005730
GO:GO:0003676 EMBL:AC005309 GO:GO:0030529 EMBL:AC002535
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
OMA:VKELWTE HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVL-GXXXXXXXXXXXXXXXXXX 70
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL
Sbjct: 23 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 82
Query: 71 XXXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VI+V
Sbjct: 83 LPVNRDRFISKMFLRGDSVIIV 104
>TAIR|locus:2081685 [details] [associations]
symbol:AT3G62840 "AT3G62840" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002686 EMBL:CP002685 GO:GO:0005730 GO:GO:0003676
EMBL:AC005309 GO:GO:0030529 EMBL:AC002535 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777 OMA:VKELWTE
HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVL-GXXXXXXXXXXXXXXXXXX 70
PL ++ +S+ + +V + RN R L G++ A+D+H NMVL
Sbjct: 23 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 82
Query: 71 XXXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VI+V
Sbjct: 83 LPVNRDRFISKMFLRGDSVIIV 104
>WB|WBGene00004917 [details] [associations]
symbol:snr-4 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0032940 GO:GO:0008380 GO:GO:0006397
GO:GO:0030529 GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096
PANTHER:PTHR12777 PIR:T20151 RefSeq:NP_506004.1
ProteinModelPortal:Q18786 SMR:Q18786 DIP:DIP-27008N IntAct:Q18786
MINT:MINT-1076870 STRING:Q18786 PaxDb:Q18786
EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVL-GXXXXXXXXXXXXXXXXXX 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 XXXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>UNIPROTKB|Q18786 [details] [associations]
symbol:snr-4 "Probable small nuclear ribonucleoprotein Sm
D2" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0006397 GO:GO:0030529
GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
PIR:T20151 RefSeq:NP_506004.1 ProteinModelPortal:Q18786 SMR:Q18786
DIP:DIP-27008N IntAct:Q18786 MINT:MINT-1076870 STRING:Q18786
PaxDb:Q18786 EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVL-GXXXXXXXXXXXXXXXXXX 70
PL ++ S+ + +V + RN + L G++ A+D+H NMVL
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query: 71 XXXXXXRSIPMLFVRGDGVILV 92
R I +F+RGD VILV
Sbjct: 88 KSVAKDRFISKMFLRGDSVILV 109
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 58 (25.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 15 LDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVL 51
LDL R D+R+ R + G L +DQ +N+VL
Sbjct: 26 LDLSRYQ-DQRIQATFTGGRQITGILKGFDQLMNLVL 61
Score = 38 (18.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 77 RSIPMLFVRGDGVILVSP 94
R + ++ VRG ++L++P
Sbjct: 81 RKLGLVVVRGTTLVLIAP 98
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.141 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 101 77 0.00091 102 3 11 22 0.36 29
29 0.50 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 441 (47 KB)
Total size of DFA: 80 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.28u 0.15s 7.43t Elapsed: 00:00:01
Total cpu time: 7.28u 0.15s 7.43t Elapsed: 00:00:01
Start: Thu Aug 15 12:32:14 2013 End: Thu Aug 15 12:32:15 2013