Query psy3155
Match_columns 131
No_of_seqs 151 out of 1128
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 17:48:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 8.5E-31 1.8E-35 152.1 12.3 127 1-131 22-148 (160)
2 KOG0027|consensus 100.0 2.6E-28 5.7E-33 143.7 12.9 131 1-131 10-141 (151)
3 KOG0028|consensus 99.9 1.6E-24 3.4E-29 123.9 12.4 126 2-130 36-161 (172)
4 PTZ00183 centrin; Provisional 99.9 3.3E-24 7.2E-29 127.2 13.2 127 2-131 20-146 (158)
5 PTZ00184 calmodulin; Provision 99.9 1.1E-23 2.4E-28 123.8 13.0 127 2-131 14-140 (149)
6 KOG0030|consensus 99.9 7.6E-24 1.7E-28 118.4 9.4 129 1-131 13-143 (152)
7 KOG0031|consensus 99.9 4.9E-23 1.1E-27 117.0 12.5 123 1-130 34-156 (171)
8 KOG0037|consensus 99.9 2.7E-20 5.9E-25 111.8 11.8 120 2-131 60-180 (221)
9 KOG0034|consensus 99.8 1.6E-18 3.5E-23 104.1 10.8 123 2-131 36-167 (187)
10 KOG0036|consensus 99.8 5.4E-18 1.2E-22 110.3 12.5 121 2-131 17-138 (463)
11 KOG0044|consensus 99.8 5.1E-18 1.1E-22 102.1 10.7 125 3-131 30-167 (193)
12 PLN02964 phosphatidylserine de 99.6 5.2E-15 1.1E-19 103.1 11.8 109 2-118 146-272 (644)
13 KOG4223|consensus 99.6 2.9E-15 6.4E-20 95.0 6.1 130 2-131 166-297 (325)
14 KOG0037|consensus 99.5 1.9E-13 4.1E-18 82.6 8.2 88 2-99 127-216 (221)
15 PF13499 EF-hand_7: EF-hand do 99.5 1.4E-13 3E-18 70.2 6.0 61 1-61 2-66 (66)
16 KOG0044|consensus 99.5 5.5E-13 1.2E-17 80.5 8.9 102 2-103 67-175 (193)
17 KOG0377|consensus 99.5 1.6E-12 3.4E-17 86.1 10.6 127 2-130 467-606 (631)
18 cd05022 S-100A13 S-100A13: S-1 99.5 2.7E-13 5.8E-18 72.6 5.8 66 1-66 10-78 (89)
19 KOG0027|consensus 99.5 9.7E-13 2.1E-17 77.6 8.7 98 2-103 47-149 (151)
20 PTZ00183 centrin; Provisional 99.4 3.1E-12 6.6E-17 75.8 10.1 98 2-103 56-154 (158)
21 cd05027 S-100B S-100B: S-100B 99.4 9.2E-13 2E-17 70.6 6.7 65 1-65 10-81 (88)
22 cd05022 S-100A13 S-100A13: S-1 99.4 3.7E-13 8E-18 72.0 4.9 59 73-131 6-67 (89)
23 PTZ00184 calmodulin; Provision 99.4 7.6E-12 1.7E-16 73.4 9.7 97 2-102 50-147 (149)
24 COG5126 FRQ1 Ca2+-binding prot 99.4 1.1E-11 2.4E-16 72.7 9.6 97 2-103 59-156 (160)
25 KOG4223|consensus 99.4 3.4E-12 7.4E-17 81.3 7.1 130 2-131 80-220 (325)
26 cd05027 S-100B S-100B: S-100B 99.4 3E-12 6.6E-17 68.6 5.9 59 73-131 6-71 (88)
27 KOG0034|consensus 99.4 3.8E-11 8.3E-16 72.5 10.9 102 2-103 69-175 (187)
28 KOG0038|consensus 99.3 8.1E-12 1.8E-16 71.2 7.1 90 38-130 74-168 (189)
29 PF13499 EF-hand_7: EF-hand do 99.3 1.5E-11 3.3E-16 62.6 7.5 63 38-100 3-65 (66)
30 cd00052 EH Eps15 homology doma 99.3 1.6E-11 3.5E-16 62.6 7.1 62 1-64 1-62 (67)
31 cd05025 S-100A1 S-100A1: S-100 99.3 1.2E-11 2.6E-16 67.0 6.7 65 1-65 11-82 (92)
32 PF13833 EF-hand_8: EF-hand do 99.3 1.7E-11 3.6E-16 60.0 6.4 52 12-63 1-53 (54)
33 cd05031 S-100A10_like S-100A10 99.3 1.1E-11 2.5E-16 67.4 6.3 64 1-64 10-80 (94)
34 cd05029 S-100A6 S-100A6: S-100 99.3 2.5E-11 5.5E-16 65.0 6.6 63 3-65 14-81 (88)
35 cd05026 S-100Z S-100Z: S-100Z 99.3 3.6E-11 7.7E-16 65.2 6.8 64 2-65 13-83 (93)
36 cd00051 EFh EF-hand, calcium b 99.3 5.2E-11 1.1E-15 59.4 6.9 61 1-61 2-62 (63)
37 KOG0028|consensus 99.2 2.4E-10 5.2E-15 66.2 9.2 97 3-103 73-170 (172)
38 smart00027 EH Eps15 homology d 99.2 6.8E-11 1.5E-15 64.6 6.6 61 2-64 13-73 (96)
39 cd05029 S-100A6 S-100A6: S-100 99.2 5.2E-11 1.1E-15 63.8 5.7 58 74-131 9-71 (88)
40 PF14658 EF-hand_9: EF-hand do 99.2 1.2E-10 2.6E-15 58.1 6.4 62 3-64 2-65 (66)
41 cd00213 S-100 S-100: S-100 dom 99.2 7.6E-11 1.6E-15 63.4 5.9 64 1-64 10-80 (88)
42 cd05031 S-100A10_like S-100A10 99.2 9.3E-11 2E-15 63.8 6.0 59 73-131 6-71 (94)
43 cd05025 S-100A1 S-100A1: S-100 99.2 1.1E-10 2.5E-15 63.2 6.0 58 74-131 8-72 (92)
44 cd00052 EH Eps15 homology doma 99.1 2E-10 4.2E-15 58.5 5.3 51 78-130 2-52 (67)
45 cd05026 S-100Z S-100Z: S-100Z 99.1 2.2E-10 4.8E-15 62.1 5.6 58 74-131 9-73 (93)
46 smart00027 EH Eps15 homology d 99.1 4.3E-10 9.4E-15 61.4 6.5 55 74-130 9-63 (96)
47 cd05023 S-100A11 S-100A11: S-1 99.1 6.2E-10 1.3E-14 59.8 6.6 64 2-65 12-82 (89)
48 cd00213 S-100 S-100: S-100 dom 99.1 3.6E-10 7.7E-15 60.8 5.7 60 72-131 5-71 (88)
49 PLN02964 phosphatidylserine de 99.1 1E-09 2.2E-14 77.2 9.3 114 14-131 119-235 (644)
50 PF13833 EF-hand_8: EF-hand do 99.1 2E-10 4.3E-15 56.1 4.1 43 88-130 1-44 (54)
51 cd00051 EFh EF-hand, calcium b 99.0 1E-09 2.2E-14 54.6 5.7 54 77-130 2-55 (63)
52 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.8E-09 3.9E-14 60.6 6.0 56 72-131 45-100 (116)
53 KOG2562|consensus 99.0 3.1E-09 6.6E-14 71.1 7.2 119 5-130 284-415 (493)
54 cd05030 calgranulins Calgranul 99.0 2.9E-09 6.2E-14 57.2 5.6 63 2-64 11-80 (88)
55 cd05023 S-100A11 S-100A11: S-1 99.0 3E-09 6.5E-14 57.1 5.7 59 73-131 7-72 (89)
56 cd00252 SPARC_EC SPARC_EC; ext 98.9 3.9E-09 8.4E-14 59.3 5.9 64 32-103 45-108 (116)
57 PF14658 EF-hand_9: EF-hand do 98.9 3.9E-09 8.4E-14 52.7 4.3 51 80-130 3-55 (66)
58 KOG0040|consensus 98.9 2.4E-08 5.2E-13 74.9 9.8 111 2-122 2256-2373(2399)
59 PF00036 EF-hand_1: EF hand; 98.9 5.6E-09 1.2E-13 44.1 3.6 28 77-104 2-29 (29)
60 KOG0036|consensus 98.8 3.2E-08 6.9E-13 65.6 8.4 88 34-129 13-100 (463)
61 KOG0041|consensus 98.8 2.8E-08 6E-13 59.9 7.3 97 2-100 102-200 (244)
62 cd05030 calgranulins Calgranul 98.8 1.9E-08 4.1E-13 54.0 5.2 59 73-131 6-71 (88)
63 PF13405 EF-hand_6: EF-hand do 98.8 1.6E-08 3.4E-13 43.5 3.6 30 76-105 1-31 (31)
64 PF00036 EF-hand_1: EF hand; 98.7 1.7E-08 3.6E-13 42.6 2.5 26 2-27 3-28 (29)
65 KOG0031|consensus 98.6 2.5E-07 5.4E-12 53.6 6.4 60 3-62 105-164 (171)
66 cd05024 S-100A10 S-100A10: A s 98.6 4E-07 8.6E-12 48.7 6.7 62 3-65 12-78 (91)
67 PF13405 EF-hand_6: EF-hand do 98.6 6E-08 1.3E-12 41.7 2.5 29 1-29 2-31 (31)
68 KOG0038|consensus 98.6 1.5E-06 3.2E-11 50.1 8.7 101 3-103 75-177 (189)
69 KOG0041|consensus 98.6 1.8E-07 3.9E-12 56.5 5.2 57 74-130 98-154 (244)
70 KOG0030|consensus 98.5 4.2E-07 9.2E-12 51.8 5.6 58 4-62 93-150 (152)
71 KOG2643|consensus 98.5 4.9E-07 1.1E-11 60.5 6.3 117 5-130 324-444 (489)
72 PF14788 EF-hand_10: EF hand; 98.5 1.1E-06 2.4E-11 41.6 5.4 50 15-64 1-50 (51)
73 KOG4251|consensus 98.5 6.2E-07 1.3E-11 56.0 5.9 59 2-60 104-165 (362)
74 PF13202 EF-hand_5: EF hand; P 98.5 2.8E-07 6.1E-12 37.5 3.0 25 77-101 1-25 (25)
75 KOG2643|consensus 98.5 3.9E-06 8.5E-11 56.3 9.6 94 4-105 238-348 (489)
76 KOG0751|consensus 98.4 1.1E-06 2.4E-11 59.8 5.5 51 75-125 179-229 (694)
77 cd05024 S-100A10 S-100A10: A s 98.3 3.4E-06 7.4E-11 45.1 5.9 57 74-131 7-68 (91)
78 KOG0377|consensus 98.3 2.3E-06 4.9E-11 57.7 6.3 73 33-105 545-617 (631)
79 KOG0169|consensus 98.3 8.1E-06 1.7E-10 58.2 9.2 115 2-124 139-255 (746)
80 PF12763 EF-hand_4: Cytoskelet 98.3 3.9E-06 8.5E-11 46.3 5.9 60 2-64 13-72 (104)
81 PF13202 EF-hand_5: EF hand; P 98.2 1.2E-06 2.7E-11 35.6 2.1 23 2-24 2-24 (25)
82 KOG4666|consensus 98.2 4.7E-06 1E-10 54.1 5.6 100 1-105 261-361 (412)
83 PRK12309 transaldolase/EF-hand 98.2 1.2E-05 2.5E-10 54.4 7.6 55 31-102 330-384 (391)
84 PF14788 EF-hand_10: EF hand; 98.1 2.4E-05 5.1E-10 37.1 5.3 50 51-104 1-50 (51)
85 PRK12309 transaldolase/EF-hand 98.1 8E-06 1.7E-10 55.1 5.1 51 2-65 337-387 (391)
86 PF05042 Caleosin: Caleosin re 98.0 0.00017 3.6E-09 43.0 8.6 126 3-129 11-156 (174)
87 KOG4666|consensus 97.9 1.9E-05 4E-10 51.4 3.7 91 35-130 259-350 (412)
88 KOG2562|consensus 97.8 0.00014 3.1E-09 49.5 7.4 122 2-130 228-370 (493)
89 PF10591 SPARC_Ca_bdg: Secrete 97.8 5.3E-06 1.1E-10 46.5 -0.2 63 31-99 50-112 (113)
90 PF10591 SPARC_Ca_bdg: Secrete 97.7 7.6E-06 1.6E-10 45.9 -0.1 57 72-130 51-107 (113)
91 PF12763 EF-hand_4: Cytoskelet 97.7 0.00024 5.1E-09 39.3 5.5 61 36-103 11-71 (104)
92 smart00054 EFh EF-hand, calciu 97.6 0.00011 2.3E-09 30.0 3.0 27 77-103 2-28 (29)
93 KOG0046|consensus 97.6 0.00022 4.8E-09 49.4 5.8 64 2-66 22-88 (627)
94 KOG0751|consensus 97.6 0.00088 1.9E-08 46.3 8.5 91 8-104 45-137 (694)
95 KOG0040|consensus 97.6 0.00042 9.2E-09 53.5 7.6 88 35-122 2253-2345(2399)
96 KOG4251|consensus 97.5 0.00045 9.7E-09 43.6 6.0 70 34-104 100-169 (362)
97 smart00054 EFh EF-hand, calciu 97.5 0.0002 4.3E-09 29.1 2.8 26 2-27 3-28 (29)
98 KOG0046|consensus 97.3 0.0008 1.7E-08 46.7 5.4 58 73-131 17-77 (627)
99 PF09279 EF-hand_like: Phospho 97.1 0.0012 2.7E-08 34.8 3.7 62 2-64 3-70 (83)
100 PF09279 EF-hand_like: Phospho 97.0 0.0015 3.2E-08 34.5 3.9 46 77-123 2-49 (83)
101 KOG4065|consensus 97.0 0.0023 5.1E-08 35.6 4.3 52 79-130 71-136 (144)
102 KOG0035|consensus 96.9 0.0075 1.6E-07 44.8 7.3 95 1-99 749-848 (890)
103 KOG1029|consensus 96.8 0.02 4.2E-07 42.1 8.7 54 75-130 195-248 (1118)
104 PF05517 p25-alpha: p25-alpha 96.7 0.012 2.6E-07 35.0 6.2 65 2-66 2-72 (154)
105 KOG1029|consensus 96.3 0.0082 1.8E-07 44.0 4.2 60 2-63 198-257 (1118)
106 KOG1707|consensus 96.2 0.059 1.3E-06 38.5 8.1 106 1-106 197-346 (625)
107 KOG4065|consensus 96.0 0.039 8.3E-07 31.0 5.2 57 4-60 72-142 (144)
108 KOG4347|consensus 95.8 0.03 6.5E-07 40.2 5.2 77 16-97 535-612 (671)
109 KOG0169|consensus 95.7 0.13 2.9E-06 37.8 8.2 82 33-121 134-215 (746)
110 PLN02952 phosphoinositide phos 95.7 0.092 2E-06 38.0 7.4 70 48-120 13-84 (599)
111 KOG1265|consensus 95.4 0.44 9.5E-06 36.1 9.9 107 9-125 158-281 (1189)
112 PF08726 EFhand_Ca_insen: Ca2+ 95.3 0.015 3.2E-07 29.7 1.9 42 73-122 4-45 (69)
113 KOG3555|consensus 95.2 0.052 1.1E-06 36.3 4.4 52 74-129 249-300 (434)
114 KOG3555|consensus 94.4 0.11 2.4E-06 34.8 4.5 66 32-105 247-312 (434)
115 KOG4578|consensus 94.2 0.057 1.2E-06 35.9 2.9 64 37-103 335-398 (421)
116 KOG0042|consensus 94.0 0.13 2.8E-06 36.9 4.3 66 3-68 597-662 (680)
117 KOG4578|consensus 93.8 0.066 1.4E-06 35.6 2.6 62 4-65 338-400 (421)
118 KOG1955|consensus 93.5 0.21 4.5E-06 35.3 4.7 59 5-65 237-295 (737)
119 PLN02952 phosphoinositide phos 93.5 1.1 2.4E-05 32.7 8.4 89 12-103 13-110 (599)
120 PF11116 DUF2624: Protein of u 93.4 0.63 1.4E-05 24.7 7.6 70 14-84 13-82 (85)
121 KOG4347|consensus 93.2 0.32 6.8E-06 35.4 5.3 71 52-125 535-605 (671)
122 cd07313 terB_like_2 tellurium 93.0 0.82 1.8E-05 25.0 6.3 82 13-99 13-96 (104)
123 PF08976 DUF1880: Domain of un 91.8 0.27 5.9E-06 27.6 2.9 33 31-63 3-35 (118)
124 PF11116 DUF2624: Protein of u 91.8 0.75 1.6E-05 24.5 4.4 32 90-121 13-44 (85)
125 PF14513 DAG_kinase_N: Diacylg 91.4 1.6 3.5E-05 25.6 5.9 67 50-122 6-80 (138)
126 KOG0998|consensus 91.2 0.081 1.8E-06 39.9 0.6 58 72-131 280-337 (847)
127 KOG2243|consensus 91.1 0.57 1.2E-05 37.7 4.8 59 3-62 4061-4119(5019)
128 KOG0042|consensus 91.0 0.52 1.1E-05 34.0 4.2 56 74-129 592-647 (680)
129 PRK00523 hypothetical protein; 90.1 1.6 3.4E-05 22.4 4.6 43 78-121 27-69 (72)
130 PF03672 UPF0154: Uncharacteri 89.6 1.6 3.6E-05 21.9 4.5 34 88-121 28-61 (64)
131 KOG2243|consensus 89.0 0.58 1.2E-05 37.7 3.4 51 79-130 4061-4111(5019)
132 PF05099 TerB: Tellurite resis 88.9 0.7 1.5E-05 26.7 3.2 78 13-95 37-116 (140)
133 PF02761 Cbl_N2: CBL proto-onc 88.4 2.1 4.6E-05 22.8 4.4 70 31-105 3-72 (85)
134 PF05042 Caleosin: Caleosin re 88.0 2.5 5.4E-05 25.8 5.0 33 87-119 88-124 (174)
135 KOG3449|consensus 87.8 3.3 7.2E-05 23.1 5.0 43 79-121 5-47 (112)
136 PRK01844 hypothetical protein; 87.4 2.6 5.7E-05 21.6 4.4 43 78-121 26-68 (72)
137 PF07879 PHB_acc_N: PHB/PHA ac 87.4 2.2 4.7E-05 21.4 3.8 40 82-121 10-59 (64)
138 PF08414 NADPH_Ox: Respiratory 87.4 2.5 5.4E-05 23.2 4.3 65 34-104 29-93 (100)
139 KOG3866|consensus 87.2 0.85 1.8E-05 30.4 3.0 63 3-65 248-326 (442)
140 PF05517 p25-alpha: p25-alpha 86.8 2.2 4.7E-05 25.5 4.4 82 38-120 2-88 (154)
141 KOG2871|consensus 86.6 1.3 2.8E-05 30.3 3.6 41 74-114 308-348 (449)
142 KOG1265|consensus 86.6 11 0.00023 29.4 8.4 82 19-103 208-299 (1189)
143 COG4103 Uncharacterized protei 86.6 4.8 0.0001 23.7 6.8 96 4-106 35-135 (148)
144 PF09069 EF-hand_3: EF-hand; 86.3 3.7 8.1E-05 22.2 5.9 60 2-64 6-76 (90)
145 TIGR01848 PHA_reg_PhaR polyhyd 86.1 2.2 4.8E-05 23.7 3.8 64 44-121 12-79 (107)
146 PF02761 Cbl_N2: CBL proto-onc 85.3 4.1 8.8E-05 21.7 5.3 50 14-63 21-70 (85)
147 PF07308 DUF1456: Protein of u 85.0 3.6 7.9E-05 20.9 5.4 44 16-59 14-57 (68)
148 PF03672 UPF0154: Uncharacteri 84.7 3 6.5E-05 20.9 3.6 32 13-44 29-60 (64)
149 KOG1955|consensus 84.6 3.2 6.8E-05 29.7 4.8 53 75-129 231-283 (737)
150 KOG2871|consensus 84.4 1.1 2.4E-05 30.6 2.6 60 1-60 311-371 (449)
151 PF12174 RST: RCD1-SRO-TAF4 (R 84.4 2.3 5.1E-05 21.7 3.2 50 49-105 6-56 (70)
152 COG3763 Uncharacterized protei 84.4 4 8.6E-05 20.8 4.8 42 79-121 27-68 (71)
153 PTZ00373 60S Acidic ribosomal 84.4 5.5 0.00012 22.5 5.2 42 80-121 8-49 (112)
154 PF09069 EF-hand_3: EF-hand; 84.4 3 6.5E-05 22.5 3.8 28 75-103 3-30 (90)
155 KOG3866|consensus 83.7 8.4 0.00018 26.0 6.2 86 17-102 225-323 (442)
156 KOG0998|consensus 82.8 0.4 8.7E-06 36.4 0.1 63 2-66 286-348 (847)
157 PLN02228 Phosphoinositide phos 82.1 9.8 0.00021 28.0 6.6 69 31-103 20-92 (567)
158 PF14513 DAG_kinase_N: Diacylg 82.0 3.5 7.7E-05 24.2 3.7 69 13-86 5-80 (138)
159 KOG0035|consensus 81.3 4.4 9.6E-05 31.1 4.8 59 72-130 744-807 (890)
160 PRK00523 hypothetical protein; 80.8 5 0.00011 20.6 3.5 32 13-44 37-68 (72)
161 KOG1707|consensus 80.5 9.2 0.0002 28.1 5.9 50 72-121 192-242 (625)
162 PF08461 HTH_12: Ribonuclease 79.4 6.3 0.00014 19.8 3.8 37 88-124 10-46 (66)
163 PF01885 PTS_2-RNA: RNA 2'-pho 78.1 5.7 0.00012 24.6 3.9 37 85-121 26-62 (186)
164 COG1460 Uncharacterized protei 78.0 6.6 0.00014 22.2 3.8 31 92-122 80-110 (114)
165 KOG0039|consensus 77.8 6.8 0.00015 29.2 4.8 68 52-129 4-79 (646)
166 cd05833 Ribosomal_P2 Ribosomal 76.1 12 0.00025 21.1 5.1 42 80-121 6-47 (109)
167 PF09068 EF-hand_2: EF hand; 75.8 13 0.00028 21.5 8.0 73 32-104 38-126 (127)
168 PRK09430 djlA Dna-J like membr 75.2 21 0.00045 23.5 9.6 99 13-120 69-175 (267)
169 TIGR01209 RNA ligase, Pab1020 74.4 23 0.00049 24.7 6.2 104 5-112 163-280 (374)
170 KOG3077|consensus 74.2 22 0.00047 23.4 6.5 58 7-64 73-130 (260)
171 PLN02222 phosphoinositide phos 73.8 14 0.00031 27.3 5.5 61 2-64 28-91 (581)
172 PF09336 Vps4_C: Vps4 C termin 73.0 7.8 0.00017 19.3 3.0 26 91-116 29-54 (62)
173 PF00404 Dockerin_1: Dockerin 73.0 4.9 0.00011 15.3 1.9 15 85-99 1-15 (21)
174 PRK00819 RNA 2'-phosphotransfe 72.9 12 0.00026 23.0 4.4 36 86-121 28-63 (179)
175 TIGR00135 gatC glutamyl-tRNA(G 71.6 13 0.00028 20.0 3.9 28 92-119 1-28 (93)
176 PLN02230 phosphoinositide phos 71.3 21 0.00046 26.5 5.9 61 2-63 32-102 (598)
177 TIGR01639 P_fal_TIGR01639 Plas 71.0 11 0.00024 18.6 3.5 31 14-44 8-38 (61)
178 PRK14981 DNA-directed RNA poly 71.0 12 0.00025 21.1 3.7 30 92-121 79-108 (112)
179 PF07128 DUF1380: Protein of u 70.3 14 0.0003 21.8 4.0 31 92-122 27-57 (139)
180 PF03979 Sigma70_r1_1: Sigma-7 70.1 8.1 0.00017 20.3 2.9 42 76-121 8-49 (82)
181 KOG4004|consensus 70.0 2.3 5E-05 26.5 0.9 29 73-101 220-248 (259)
182 PLN02222 phosphoinositide phos 69.7 23 0.00051 26.2 5.8 68 32-103 22-90 (581)
183 KOG0506|consensus 69.7 40 0.00087 24.5 7.3 59 4-62 91-157 (622)
184 cd04411 Ribosomal_P1_P2_L12p R 69.4 18 0.00038 20.2 5.8 29 92-120 17-45 (105)
185 cd07176 terB tellurite resista 69.1 7.3 0.00016 21.3 2.7 79 13-97 16-99 (111)
186 PLN00138 large subunit ribosom 69.1 19 0.00041 20.4 5.1 41 81-121 7-47 (113)
187 PLN02228 Phosphoinositide phos 68.6 27 0.00059 25.8 5.9 61 2-64 27-93 (567)
188 PF13331 DUF4093: Domain of un 68.0 12 0.00025 20.1 3.2 57 51-117 30-86 (87)
189 PLN02230 phosphoinositide phos 67.4 24 0.00052 26.2 5.5 46 74-120 28-76 (598)
190 PRK00034 gatC aspartyl/glutamy 67.3 18 0.00038 19.5 4.0 29 91-119 2-30 (95)
191 PRK10945 gene expression modul 67.2 16 0.00034 18.8 3.7 23 96-118 23-45 (72)
192 COG5502 Uncharacterized conser 66.6 24 0.00051 20.7 5.3 53 48-104 72-124 (135)
193 PF14771 DUF4476: Domain of un 63.4 22 0.00047 19.1 9.1 90 15-116 4-94 (95)
194 PF09107 SelB-wing_3: Elongati 63.1 16 0.00034 17.3 3.4 32 88-124 7-38 (50)
195 PF01885 PTS_2-RNA: RNA 2'-pho 62.2 21 0.00046 22.1 4.0 37 9-45 26-62 (186)
196 PF13623 SurA_N_2: SurA N-term 61.9 31 0.00068 20.4 6.8 60 51-117 48-115 (145)
197 cd07894 Adenylation_RNA_ligase 61.4 43 0.00094 23.0 5.6 43 5-47 131-183 (342)
198 PF00690 Cation_ATPase_N: Cati 61.2 18 0.00039 18.0 3.1 27 79-105 8-34 (69)
199 cd07316 terB_like_DjlA N-termi 60.7 25 0.00055 19.0 7.1 83 13-98 13-96 (106)
200 PRK00819 RNA 2'-phosphotransfe 60.0 35 0.00077 21.1 4.6 36 9-44 27-62 (179)
201 KOG0113|consensus 60.0 23 0.0005 23.8 3.9 49 75-123 79-128 (335)
202 PF10281 Ish1: Putative stress 59.1 15 0.00033 16.0 2.6 18 92-109 4-21 (38)
203 PF08044 DUF1707: Domain of un 59.0 19 0.0004 17.3 2.7 30 89-118 21-50 (53)
204 PRK10391 oriC-binding nucleoid 58.8 23 0.0005 18.1 3.0 27 94-120 16-43 (71)
205 KOG2301|consensus 58.7 33 0.00072 28.8 5.3 63 2-65 1420-1486(1592)
206 COG0721 GatC Asp-tRNAAsn/Glu-t 58.7 29 0.00062 19.0 3.8 29 91-119 2-30 (96)
207 KOG4286|consensus 58.0 25 0.00054 26.9 4.2 95 4-101 475-578 (966)
208 PLN02223 phosphoinositide phos 57.1 42 0.00091 24.7 5.1 61 2-63 19-92 (537)
209 KOG4403|consensus 57.1 13 0.00029 26.2 2.7 63 34-103 67-129 (575)
210 PTZ00373 60S Acidic ribosomal 56.9 35 0.00075 19.4 4.8 47 8-59 12-58 (112)
211 COG2818 Tag 3-methyladenine DN 56.9 11 0.00023 23.4 2.0 42 73-114 53-94 (188)
212 PF06384 ICAT: Beta-catenin-in 56.6 21 0.00045 18.8 2.7 23 20-42 21-43 (78)
213 PF12631 GTPase_Cys_C: Catalyt 56.2 27 0.00058 17.8 3.7 46 75-120 23-72 (73)
214 PF13829 DUF4191: Domain of un 54.7 41 0.0009 21.6 4.4 39 83-121 159-197 (224)
215 KOG4070|consensus 54.2 36 0.00078 20.5 3.8 43 77-119 59-106 (180)
216 PLN02223 phosphoinositide phos 54.0 63 0.0014 23.9 5.6 45 75-120 16-65 (537)
217 PF01023 S_100: S-100/ICaBP ty 53.9 22 0.00048 16.2 3.9 29 75-103 6-36 (44)
218 PF05321 HHA: Haemolysin expre 53.7 13 0.00027 18.2 1.6 29 93-121 8-36 (57)
219 PF06648 DUF1160: Protein of u 52.7 44 0.00095 19.3 4.4 42 75-119 37-79 (122)
220 smart00513 SAP Putative DNA-bi 52.6 20 0.00043 15.3 2.6 18 91-108 3-20 (35)
221 smart00874 B5 tRNA synthetase 52.3 30 0.00065 17.3 3.4 17 105-121 16-32 (71)
222 PHA02335 hypothetical protein 51.9 42 0.00091 18.8 5.1 47 49-105 22-70 (118)
223 PF11848 DUF3368: Domain of un 50.6 27 0.00058 16.2 3.9 33 88-120 14-47 (48)
224 PF01316 Arg_repressor: Argini 50.1 35 0.00077 17.5 4.4 31 91-121 19-49 (70)
225 COG2058 RPP1A Ribosomal protei 50.1 46 0.00099 18.7 4.0 31 91-121 16-46 (109)
226 TIGR03798 ocin_TIGR03798 bacte 50.0 33 0.0007 17.0 3.8 26 92-117 25-50 (64)
227 cd08313 Death_TNFR1 Death doma 49.8 39 0.00084 17.8 3.3 25 92-118 9-33 (80)
228 KOG1264|consensus 49.5 35 0.00077 26.6 3.9 95 8-104 153-250 (1267)
229 PF08414 NADPH_Ox: Respiratory 49.0 46 0.00099 18.4 6.5 59 2-65 33-94 (100)
230 PF02037 SAP: SAP domain; Int 48.6 24 0.00052 15.1 2.3 19 15-33 3-21 (35)
231 cd05833 Ribosomal_P2 Ribosomal 48.4 49 0.0011 18.6 4.8 52 7-63 9-60 (109)
232 PF01325 Fe_dep_repress: Iron 47.9 35 0.00075 16.7 4.1 50 72-130 5-54 (60)
233 PRK06402 rpl12p 50S ribosomal 47.1 52 0.0011 18.5 5.7 31 91-121 16-46 (106)
234 cd08316 Death_FAS_TNFRSF6 Deat 46.9 49 0.0011 18.2 7.3 26 94-119 69-94 (97)
235 PF03484 B5: tRNA synthetase B 46.6 39 0.00086 17.0 2.9 17 105-121 16-32 (70)
236 cd07357 HN_L-whirlin_R2_like S 46.3 36 0.00078 18.0 2.6 37 32-68 16-52 (81)
237 PF04558 tRNA_synt_1c_R1: Glut 45.9 16 0.00034 22.2 1.5 46 74-120 84-129 (164)
238 TIGR03581 EF_0839 conserved hy 45.2 83 0.0018 20.3 5.4 88 12-103 131-233 (236)
239 KOG4286|consensus 44.7 72 0.0016 24.7 4.8 61 36-101 471-531 (966)
240 PF13592 HTH_33: Winged helix- 44.4 40 0.00086 16.4 3.6 31 91-121 4-35 (60)
241 PF13608 Potyvirid-P3: Protein 44.1 74 0.0016 22.9 4.7 38 83-120 359-398 (445)
242 cd05831 Ribosomal_P1 Ribosomal 43.8 58 0.0013 18.1 4.3 31 90-120 16-46 (103)
243 PRK00441 argR arginine repress 43.5 71 0.0015 19.1 4.6 34 88-121 15-48 (149)
244 COG1423 ATP-dependent DNA liga 43.3 1.1E+02 0.0024 21.3 5.7 52 5-56 171-233 (382)
245 KOG2301|consensus 42.7 25 0.00054 29.4 2.5 35 72-106 1414-1448(1592)
246 PF09682 Holin_LLH: Phage holi 42.2 62 0.0013 18.0 4.0 25 96-120 76-100 (108)
247 KOG4301|consensus 42.2 31 0.00067 23.8 2.5 59 6-65 117-175 (434)
248 COG5069 SAC6 Ca2+-binding acti 42.1 92 0.002 22.8 4.8 61 3-64 489-549 (612)
249 PF03874 RNA_pol_Rpb4: RNA pol 41.1 41 0.00089 18.8 2.7 18 103-120 96-113 (117)
250 PF03732 Retrotrans_gag: Retro 41.0 54 0.0012 17.0 4.8 58 51-112 26-85 (96)
251 KOG2419|consensus 40.7 58 0.0012 24.8 3.8 65 38-102 440-532 (975)
252 TIGR03573 WbuX N-acetyl sugar 40.2 1E+02 0.0022 21.2 4.8 59 27-101 284-342 (343)
253 TIGR03573 WbuX N-acetyl sugar 40.2 70 0.0015 21.9 4.1 35 89-123 300-334 (343)
254 PRK12821 aspartyl/glutamyl-tRN 40.1 1.3E+02 0.0029 21.8 5.3 35 86-120 383-417 (477)
255 TIGR00624 tag DNA-3-methyladen 40.0 37 0.0008 21.0 2.5 43 74-116 52-94 (179)
256 PF07553 Lipoprotein_Ltp: Host 39.3 46 0.00099 15.6 3.3 30 89-118 16-46 (48)
257 cd08815 Death_TNFRSF25_DR3 Dea 39.0 61 0.0013 17.0 3.2 14 92-105 9-22 (77)
258 PF11181 YflT: Heat induced st 38.5 70 0.0015 17.5 3.7 26 95-122 71-96 (103)
259 PHA02105 hypothetical protein 38.3 53 0.0012 16.1 3.3 50 15-64 4-58 (68)
260 PF08671 SinI: Anti-repressor 38.0 37 0.0008 14.2 1.7 11 92-102 17-27 (30)
261 PF02209 VHP: Villin headpiece 37.5 34 0.00074 15.0 1.5 19 92-115 2-20 (36)
262 PF07499 RuvA_C: RuvA, C-termi 37.3 47 0.001 15.2 3.6 36 19-58 4-39 (47)
263 PF09061 Stirrup: Stirrup; In 37.0 21 0.00045 17.9 0.9 30 89-118 47-76 (79)
264 KOG0506|consensus 36.9 78 0.0017 23.1 3.9 43 78-120 89-131 (622)
265 smart00657 RPOL4c DNA-directed 36.8 82 0.0018 17.8 3.5 30 92-121 83-112 (118)
266 PF12419 DUF3670: SNF2 Helicas 36.6 79 0.0017 18.5 3.5 39 88-126 80-127 (141)
267 PF09494 Slx4: Slx4 endonuclea 36.6 59 0.0013 16.1 3.7 15 91-105 44-58 (64)
268 PF11829 DUF3349: Protein of u 36.2 78 0.0017 17.4 5.0 29 16-44 20-48 (96)
269 KOG0039|consensus 36.2 1.7E+02 0.0036 22.3 5.7 84 13-103 2-89 (646)
270 PRK04280 arginine repressor; P 35.9 98 0.0021 18.5 3.8 30 92-121 19-48 (148)
271 PF07862 Nif11: Nitrogen fixat 35.1 53 0.0011 15.1 5.6 21 93-113 28-48 (49)
272 KOG1977|consensus 34.7 2E+02 0.0043 22.6 5.7 48 73-121 1028-1083(1142)
273 KOG4301|consensus 34.2 1.4E+02 0.003 20.8 4.6 61 38-103 113-173 (434)
274 KOG4403|consensus 34.1 1.6E+02 0.0035 21.3 4.9 54 50-103 43-96 (575)
275 PF07393 Sec10: Exocyst comple 34.1 1.8E+02 0.0038 22.4 5.6 96 16-119 598-698 (710)
276 PF12486 DUF3702: ImpA domain 33.9 62 0.0013 19.4 2.7 29 75-103 69-97 (148)
277 TIGR01529 argR_whole arginine 33.7 1.1E+02 0.0023 18.2 4.0 35 87-121 12-46 (146)
278 PRK10353 3-methyl-adenine DNA 33.7 39 0.00085 21.1 1.9 43 73-115 52-94 (187)
279 cd00076 H4 Histone H4, one of 33.6 82 0.0018 16.9 7.1 69 32-108 14-82 (85)
280 PF09373 PMBR: Pseudomurein-bi 33.6 46 0.001 14.0 1.9 15 89-103 2-16 (33)
281 PF15144 DUF4576: Domain of un 33.2 24 0.00051 18.5 0.8 12 52-63 44-55 (88)
282 COG1859 KptA RNA:NAD 2'-phosph 33.0 1.1E+02 0.0025 19.5 3.8 36 86-121 54-89 (211)
283 PF13099 DUF3944: Domain of un 32.7 52 0.0011 14.4 2.2 21 108-128 13-33 (35)
284 PF11445 DUF2894: Protein of u 32.6 1.3E+02 0.0029 19.0 5.7 59 55-121 131-189 (200)
285 COG5562 Phage envelope protein 32.0 35 0.00076 20.0 1.4 23 8-30 81-103 (137)
286 PRK05066 arginine repressor; P 31.9 1.2E+02 0.0026 18.3 4.2 31 91-121 23-54 (156)
287 cd00171 Sec7 Sec7 domain; Doma 31.6 1.3E+02 0.0028 18.6 10.3 39 84-122 142-182 (185)
288 PF10025 DUF2267: Uncharacteri 31.5 1.1E+02 0.0023 17.5 5.0 48 51-102 68-115 (125)
289 PF01498 HTH_Tnp_Tc3_2: Transp 31.4 75 0.0016 15.8 2.7 28 92-119 14-41 (72)
290 smart00153 VHP Villin headpiec 31.4 56 0.0012 14.3 1.9 11 92-102 2-12 (36)
291 PTZ00015 histone H4; Provision 31.3 1E+02 0.0022 17.2 7.3 69 31-107 30-98 (102)
292 PF02459 Adeno_terminal: Adeno 30.8 2E+02 0.0044 21.4 5.1 47 78-124 458-504 (548)
293 PHA03155 hypothetical protein; 30.8 1.1E+02 0.0024 17.4 5.4 95 15-115 7-103 (115)
294 KOG2278|consensus 30.7 83 0.0018 19.5 2.9 39 8-46 27-65 (207)
295 PF05383 La: La domain; Inter 30.1 61 0.0013 16.0 2.0 19 80-98 20-38 (61)
296 cd07177 terB_like tellurium re 29.9 93 0.002 16.4 5.1 78 13-98 13-95 (104)
297 PF04433 SWIRM: SWIRM domain; 29.7 34 0.00073 18.0 1.1 23 40-62 42-64 (86)
298 PF06902 Fer4_19: Divergent 4F 29.6 61 0.0013 16.2 1.9 35 82-130 27-61 (64)
299 PF07492 Trehalase_Ca-bi: Neut 29.5 23 0.00051 14.8 0.3 14 116-129 4-17 (30)
300 PF12238 MSA-2c: Merozoite sur 29.4 1.6E+02 0.0034 18.8 4.7 33 35-67 84-117 (205)
301 PF02337 Gag_p10: Retroviral G 29.1 1E+02 0.0023 16.7 3.0 23 98-120 15-37 (90)
302 cd08784 Death_DRs Death Domain 29.1 93 0.002 16.1 3.3 14 92-105 9-22 (79)
303 PF10982 DUF2789: Protein of u 28.9 96 0.0021 16.2 3.4 28 96-123 7-34 (74)
304 KOG0144|consensus 28.6 58 0.0012 23.3 2.2 31 95-125 123-153 (510)
305 PF06854 Phage_Gp15: Bacteriop 28.5 1.3E+02 0.0029 18.7 3.6 18 89-106 130-147 (183)
306 KOG2623|consensus 28.2 2.3E+02 0.005 20.4 7.5 71 32-103 316-387 (467)
307 COG5394 Uncharacterized protei 28.2 1.2E+02 0.0026 18.6 3.2 61 47-121 24-89 (193)
308 TIGR03849 arch_ComA phosphosul 28.1 1.8E+02 0.0039 19.1 5.4 48 13-60 168-222 (237)
309 TIGR02029 AcsF magnesium-proto 28.1 2.1E+02 0.0045 19.8 5.1 90 25-123 25-116 (337)
310 PF06207 DUF1002: Protein of u 28.0 1.2E+02 0.0025 19.7 3.4 32 28-59 188-219 (225)
311 PF03352 Adenine_glyco: Methyl 27.3 30 0.00066 21.4 0.7 43 74-116 48-90 (179)
312 PF08672 APC2: Anaphase promot 27.2 91 0.002 15.4 3.6 28 75-103 15-44 (60)
313 KOG1954|consensus 26.9 1.3E+02 0.0028 21.5 3.6 26 75-100 477-502 (532)
314 PTZ00315 2'-phosphotransferase 26.9 1.7E+02 0.0037 22.0 4.4 36 85-120 399-434 (582)
315 PF06226 DUF1007: Protein of u 26.6 76 0.0016 20.1 2.4 24 80-103 55-78 (212)
316 PRK03341 arginine repressor; P 26.5 1.6E+02 0.0035 18.0 4.3 35 87-121 25-59 (168)
317 TIGR03685 L21P_arch 50S riboso 26.5 1.3E+02 0.0028 16.9 5.7 31 91-121 16-46 (105)
318 PF09832 DUF2059: Uncharacteri 26.4 60 0.0013 15.8 1.6 12 108-119 17-28 (64)
319 PF13344 Hydrolase_6: Haloacid 26.3 39 0.00084 18.4 1.0 25 88-112 38-62 (101)
320 cd05832 Ribosomal_L12p Ribosom 26.2 1.3E+02 0.0028 16.9 5.6 31 91-121 16-46 (106)
321 PF12949 HeH: HeH/LEM domain; 26.1 52 0.0011 14.3 1.2 27 91-117 3-33 (35)
322 PF13543 KSR1-SAM: SAM like do 26.0 1.5E+02 0.0032 17.4 3.8 27 92-120 99-125 (129)
323 PF14848 HU-DNA_bdg: DNA-bindi 25.8 1.4E+02 0.003 17.1 4.2 31 89-119 26-56 (124)
324 PF01369 Sec7: Sec7 domain; I 25.3 1.2E+02 0.0025 18.8 3.0 36 86-121 149-186 (190)
325 PRK09389 (R)-citramalate synth 25.3 1.9E+02 0.004 21.2 4.3 47 19-65 321-369 (488)
326 PRK05439 pantothenate kinase; 25.3 2E+02 0.0043 19.7 4.2 29 87-116 24-52 (311)
327 PF00627 UBA: UBA/TS-N domain; 25.2 58 0.0013 13.9 1.3 21 100-122 8-28 (37)
328 PF08485 Polysacc_syn_2C: Poly 25.2 91 0.002 14.7 2.1 22 8-29 24-45 (48)
329 COG1321 TroR Mn-dependent tran 25.1 1.6E+02 0.0036 17.6 4.8 49 73-130 8-56 (154)
330 PF14237 DUF4339: Domain of un 25.0 66 0.0014 14.5 1.5 19 85-103 7-25 (45)
331 PF10437 Lip_prot_lig_C: Bacte 24.7 1.2E+02 0.0026 15.8 4.0 42 17-60 43-85 (86)
332 KOG1264|consensus 24.6 3.8E+02 0.0082 21.6 6.6 93 10-103 191-293 (1267)
333 PRK13654 magnesium-protoporphy 24.4 2.5E+02 0.0055 19.6 5.6 90 25-123 35-126 (355)
334 COG3820 Uncharacterized protei 24.3 76 0.0017 19.7 2.0 52 50-102 19-70 (230)
335 PLN02859 glutamine-tRNA ligase 24.3 3.6E+02 0.0079 21.3 8.0 46 74-120 86-131 (788)
336 CHL00185 ycf59 magnesium-proto 24.2 2.5E+02 0.0055 19.5 5.6 74 25-102 31-106 (351)
337 PF09851 SHOCT: Short C-termin 24.1 72 0.0016 13.2 2.0 13 89-101 14-26 (31)
338 cd01611 GABARAP Ubiquitin doma 24.0 1.3E+02 0.0029 16.9 2.9 16 50-65 49-64 (112)
339 COG1158 Rho Transcription term 23.9 1.2E+02 0.0026 21.3 3.0 70 51-124 331-409 (422)
340 PF04157 EAP30: EAP30/Vps36 fa 23.9 2E+02 0.0044 18.3 6.5 51 76-126 98-151 (223)
341 smart00540 LEM in nuclear memb 23.9 92 0.002 14.3 2.0 17 15-31 5-21 (44)
342 TIGR01321 TrpR trp operon repr 23.7 1.4E+02 0.003 16.4 3.2 11 54-64 9-19 (94)
343 PRK00199 ihfB integration host 23.7 1.3E+02 0.0029 16.0 4.0 22 94-115 3-24 (94)
344 PF12244 DUF3606: Protein of u 23.5 1.1E+02 0.0023 14.9 3.4 24 96-121 22-45 (57)
345 cd04790 HTH_Cfa-like_unk Helix 23.5 1.9E+02 0.004 17.7 5.6 18 88-105 112-129 (172)
346 PF08002 DUF1697: Protein of u 23.4 75 0.0016 18.6 1.8 19 87-105 14-32 (137)
347 PF15017 AF1Q: Drug resistance 23.4 53 0.0012 17.7 1.1 16 85-100 69-84 (87)
348 TIGR02675 tape_meas_nterm tape 23.3 1.2E+02 0.0027 15.6 3.3 15 48-62 27-41 (75)
349 TIGR00988 hip integration host 23.3 1.3E+02 0.0029 16.0 4.0 21 94-114 3-23 (94)
350 PF04022 Staphylcoagulse: Stap 22.8 40 0.00087 13.4 0.4 7 124-130 19-25 (27)
351 cd06395 PB1_Map2k5 PB1 domain 22.6 1.1E+02 0.0023 16.3 2.1 45 50-102 21-67 (91)
352 KOG0869|consensus 22.6 1.9E+02 0.0042 17.6 7.1 22 86-107 81-102 (168)
353 COG5083 SMP2 Uncharacterized p 22.4 78 0.0017 22.9 2.0 37 87-123 381-418 (580)
354 PF09066 B2-adapt-app_C: Beta2 22.4 85 0.0018 17.4 1.9 18 88-105 3-20 (114)
355 PF08479 POTRA_2: POTRA domain 22.1 43 0.00093 17.0 0.6 32 89-120 11-43 (76)
356 KOG0871|consensus 21.8 1.9E+02 0.0041 17.4 3.2 26 82-107 57-82 (156)
357 PF01988 VIT1: VIT family; In 21.7 1.8E+02 0.0039 18.4 3.4 33 92-126 80-112 (213)
358 PF09967 DUF2201: VWA-like dom 21.7 86 0.0019 17.9 1.8 18 87-104 6-23 (126)
359 PRK11858 aksA trans-homoaconit 21.7 3E+02 0.0064 19.3 4.7 45 20-64 324-371 (378)
360 PF04963 Sigma54_CBD: Sigma-54 21.6 2.2E+02 0.0047 17.8 4.0 48 10-60 45-95 (194)
361 PF07592 DDE_Tnp_ISAZ013: Rhod 21.4 2.2E+02 0.0048 19.5 3.8 15 92-106 41-55 (311)
362 COG4807 Uncharacterized protei 21.3 1.9E+02 0.0042 17.0 5.8 94 19-121 19-128 (155)
363 PF06294 DUF1042: Domain of Un 21.2 60 0.0013 19.6 1.2 16 100-115 64-79 (158)
364 smart00549 TAFH TAF homology. 21.0 1.6E+02 0.0035 16.1 4.0 44 57-103 8-51 (92)
365 PF11422 IBP39: Initiator bind 20.9 2.3E+02 0.0049 17.7 6.4 68 37-107 21-91 (181)
366 PF14193 DUF4315: Domain of un 20.7 1.6E+02 0.0034 15.8 3.4 13 108-120 48-60 (83)
367 PF09570 RE_SinI: SinI restric 20.6 2.5E+02 0.0053 18.0 4.2 41 76-120 177-217 (221)
368 COG2979 Uncharacterized protei 20.3 1.5E+02 0.0033 19.0 2.8 19 86-104 121-139 (225)
369 KOG3442|consensus 20.2 2E+02 0.0043 16.8 3.9 42 49-91 53-94 (132)
370 PF13762 MNE1: Mitochondrial s 20.2 2.1E+02 0.0046 17.1 4.2 49 74-122 79-127 (145)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=8.5e-31 Score=152.07 Aligned_cols=127 Identities=33% Similarity=0.694 Sum_probs=120.7
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
++++|+.+|++++|.|+..+|..+++.+|.+++++++..++..++. +.+.|+|.+|+.++....... ...+.++.+
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~---~~~Eel~~a 97 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG---DKEEELREA 97 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC---CcHHHHHHH
Confidence 4689999999999999999999999999999999999999999998 889999999999999987654 567999999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
|+.||.+++|+|+..+|+.+++.+|..+++++++.++..++.+++|.|+|+
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~ 148 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYE 148 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHH
Confidence 999999999999999999999999999999999999999999999999984
No 2
>KOG0027|consensus
Probab=99.96 E-value=2.6e-28 Score=143.70 Aligned_cols=131 Identities=38% Similarity=0.733 Sum_probs=120.1
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHH-HhHHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAE-AMQEELKE 79 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~-~~~~~~~~ 79 (131)
++.+|..+|.+++|+|+..+|..+++.+|..+++.++..++..+|.+++|.|++.+|+.++.......... .....++.
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~e 89 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKE 89 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999998776543221 13468999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 80 AFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
+|+.||.+++|+|+.++|+.+|..+|.+.+.+++..+++.+|.+++|.|+|+
T Consensus 90 aF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ 141 (151)
T KOG0027|consen 90 AFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFE 141 (151)
T ss_pred HHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHH
Confidence 9999999999999999999999999999999999999999999999999873
No 3
>KOG0028|consensus
Probab=99.93 E-value=1.6e-24 Score=123.87 Aligned_cols=126 Identities=33% Similarity=0.586 Sum_probs=120.0
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
+..|..||.+++|+|+..+|..+++++|+.+..+++..+...+++++.|.|+|++|...+....... .+.+.+..+|
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~---dt~eEi~~af 112 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER---DTKEEIKKAF 112 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc---CcHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999998888776 5789999999
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 82 RLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
+.+|-+++|.|+..+|+.+...+|..++++++.+++..+|.+++|.|+-
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevne 161 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNE 161 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccH
Confidence 9999999999999999999999999999999999999999999998863
No 4
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=3.3e-24 Score=127.24 Aligned_cols=127 Identities=31% Similarity=0.592 Sum_probs=115.9
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
..+|..+|.+++|.|+..+|..+++.+|..++...+..++..++.+++|.|+|.+|...+....... .....++.+|
T Consensus 20 ~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~---~~~~~l~~~F 96 (158)
T PTZ00183 20 REAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER---DPREEILKAF 96 (158)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC---CcHHHHHHHH
Confidence 5689999999999999999999999999888999999999999999999999999999877654332 3457789999
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 82 RLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
+.+|.+++|.|+.++|..++..+|..+++.++..++..++.+++|.|+|+
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ 146 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEE 146 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 99999999999999999999999999999999999999999999999873
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=1.1e-23 Score=123.83 Aligned_cols=127 Identities=36% Similarity=0.750 Sum_probs=115.9
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
+..|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|.|+|++|+..+....... .....++.+|
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~---~~~~~~~~~F 90 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT---DSEEEIKEAF 90 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC---cHHHHHHHHH
Confidence 5679999999999999999999999999988999999999999999999999999999987664432 3446789999
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 82 RLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
+.+|.+++|.|+.+++..++..+|..++.+++..++..+|.+++|.|+|+
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 140 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHH
Confidence 99999999999999999999999999999999999999999999999873
No 6
>KOG0030|consensus
Probab=99.91 E-value=7.6e-24 Score=118.40 Aligned_cols=129 Identities=25% Similarity=0.555 Sum_probs=115.7
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCC--CCCceeHhhHHHHHhhhcccccHHHhHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPD--ATGKVNFDGFCRIATHFLEEDDAEAMQEELK 78 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 78 (131)
++.+|..||..++|.|+..+...+|+.+|.+|++.++......+..+ +-..++|++|+.+++.....+. +.+.+.+-
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~-q~t~edfv 91 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD-QGTYEDFV 91 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc-cCcHHHHH
Confidence 36799999999999999999999999999999999999999888765 4468999999999998866532 25678889
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
+-++.||++++|+|...||+++|..+|.+++++|++.++.... |.+|.|.|+
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE 143 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYE 143 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHH
Confidence 9999999999999999999999999999999999999999764 788999885
No 7
>KOG0031|consensus
Probab=99.91 E-value=4.9e-23 Score=117.05 Aligned_cols=123 Identities=32% Similarity=0.620 Sum_probs=115.5
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
++++|+.+|.+++|.|++++|..++.++|..++++++..++.. ..|.|+|.-|+.++...+... .+.+.+..+
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt---dpe~~I~~A 106 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT---DPEEVILNA 106 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC---CHHHHHHHH
Confidence 3678999999999999999999999999999999999999976 478999999999999988776 567899999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
|+.||.+++|+|..+.|+.+|...|.+++++|++++++.+..+..|.|+|
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy 156 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDY 156 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeH
Confidence 99999999999999999999999999999999999999999999999987
No 8
>KOG0037|consensus
Probab=99.85 E-value=2.7e-20 Score=111.77 Aligned_cols=120 Identities=27% Similarity=0.450 Sum_probs=110.0
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
...|+..|+++.|.|+.+|+..+|.... -+.+.+.++.|...+|.+..|+|++.||..++..+ ..++.+
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----------~~Wr~v 129 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----------NQWRNV 129 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----------HHHHHH
Confidence 3568899999999999999999998553 45789999999999999999999999999998887 779999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
|+.+|.|++|+|+..||+++|..+|..++++-.+.+++++|....|.|.++
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD 180 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFD 180 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHH
Confidence 999999999999999999999999999999999999999997778887753
No 9
>KOG0034|consensus
Probab=99.80 E-value=1.6e-18 Score=104.11 Aligned_cols=123 Identities=29% Similarity=0.579 Sum_probs=100.0
Q ss_pred hHHhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCc-eeHhhHHHHHhhhcccccHHHhHHHHHH
Q psy3155 2 RKAFQMFDTA-KTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGK-VNFDGFCRIATHFLEEDDAEAMQEELKE 79 (131)
Q Consensus 2 ~~~f~~~d~~-~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
...|.+++.. +.|+|+.+||..+.. +..++ ....++..++.+++|. |+|++|+..+..+.... ....+++.
T Consensus 36 ~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~---~~~~Kl~f 108 (187)
T KOG0034|consen 36 YERFKKLDRNNGDGYLTKEEFLSIPE-LALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA---SKREKLRF 108 (187)
T ss_pred HHHHHHhccccccCccCHHHHHHHHH-HhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc---cHHHHHHH
Confidence 4578999999 999999999999883 33333 3567777777777777 99999999999987774 44469999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHc-CCCCC--HHH----HHHHHHhhccCCCCccccC
Q psy3155 80 AFRLYDREGNGYITTATLREILAAL-DDKLN--PED----LDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~--~~e----~~~l~~~~d~~~~g~i~~~ 131 (131)
+|+.||.+++|+|+.+|+.+++..+ |...+ ++. ++.++..+|.++||+|+++
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isfe 167 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFE 167 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHH
Confidence 9999999999999999999999984 43344 443 5567889999999999975
No 10
>KOG0036|consensus
Probab=99.79 E-value=5.4e-18 Score=110.26 Aligned_cols=121 Identities=23% Similarity=0.369 Sum_probs=112.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
+.+|..+|.+++|.++..++...+..+..+ +..+.+..++...|.+.+|.++|.+|..-+... +.++..+
T Consensus 17 ~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~---------E~~l~~~ 87 (463)
T KOG0036|consen 17 RCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK---------ELELYRI 87 (463)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh---------HHHHHHH
Confidence 568999999999999999999999999877 778888999999999999999999999887654 4678999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
|+..|.+++|.|..+|+.+.|+.+|.++++++++.+++.+|+++++.|+++
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~ 138 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLE 138 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccH
Confidence 999999999999999999999999999999999999999999999998863
No 11
>KOG0044|consensus
Probab=99.78 E-value=5.1e-18 Score=102.10 Aligned_cols=125 Identities=22% Similarity=0.380 Sum_probs=104.6
Q ss_pred HHhhhhcCC-CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 3 KAFQMFDTA-KTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 3 ~~f~~~d~~-~~g~i~~~~l~~~l~~l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
..+..|-.+ ++|.++.++|+.++..+... -+..-+..+|+.+|.+++|.|+|.||+..+....+. ...+.++.+
T Consensus 30 ~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG----t~eekl~w~ 105 (193)
T KOG0044|consen 30 QWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG----TLEEKLKWA 105 (193)
T ss_pred HHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC----cHHHHhhhh
Confidence 445556554 58999999999999998753 345567899999999999999999999999988877 567888999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhccCCCCccccC
Q psy3155 81 FRLYDREGNGYITTATLREILAAL----DD-------KLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~----~~-------~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
|+.||.+++|+|+.+|+..++..+ |. ...++-+..+++.+|.|+||.||++
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~e 167 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLE 167 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHH
Confidence 999999999999999999998873 31 2345567889999999999999874
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.64 E-value=5.2e-15 Score=103.05 Aligned_cols=109 Identities=21% Similarity=0.389 Sum_probs=93.5
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTE---LQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEEL 77 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 77 (131)
+++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.++...... .+.+.+
T Consensus 146 keaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~----~seEEL 217 (644)
T PLN02964 146 CESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL----VAANKK 217 (644)
T ss_pred HHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC----CCHHHH
Confidence 567999999999997 888999999 5888887 7999999999999999999999999865322 456789
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHHH
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAA-------------LDDKLNP-EDLDGIIQ 118 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~-------------~~~~~~~-~e~~~l~~ 118 (131)
+.+|+.+|.+++|+|+.+||..++.. .|..++. ++++.|++
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 99999999999999999999999998 5666666 66776663
No 13
>KOG4223|consensus
Probab=99.59 E-value=2.9e-15 Score=95.03 Aligned_cols=130 Identities=15% Similarity=0.284 Sum_probs=106.2
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhccccc-HHHhHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDD-AEAMQEELKE 79 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~ 79 (131)
++.|...|.+++|.++.+||..+|..-..+ ..+-.++..+...|++++|+|+++||+.-+........ +......-..
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 357889999999999999999999654432 34556788899999999999999999988776654211 1122234456
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 80 AFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.+...|.|++|+++.+|++..+..-+......|+..|+...|.|+||++|++
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~e 297 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKE 297 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHH
Confidence 7778899999999999999999988888999999999999999999999974
No 14
>KOG0037|consensus
Probab=99.50 E-value=1.9e-13 Score=82.65 Aligned_cols=88 Identities=26% Similarity=0.467 Sum_probs=78.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
+.+|..+|.|++|.|+..||..+|..+|++++++..+.++++++...+|.|.|++|+..+..+ ..+-++|
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L----------~~lt~~F 196 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL----------QRLTEAF 196 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH----------HHHHHHH
Confidence 578999999999999999999999999999999999999999998778999999999998776 6688899
Q ss_pred hhhCCCCCCccc--HHHHHH
Q psy3155 82 RLYDREGNGYIT--TATLRE 99 (131)
Q Consensus 82 ~~~D~~~~g~i~--~~el~~ 99 (131)
+.+|++..|.|+ .++|..
T Consensus 197 r~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 197 RRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHhccccceeEEEeHHHHHH
Confidence 999999998765 445544
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=1.4e-13 Score=70.17 Aligned_cols=61 Identities=26% Similarity=0.584 Sum_probs=45.8
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHhhcCCCCCCceeHhhHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDT----ELQALIDENDPDATGKVNFDGFCRIA 61 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 61 (131)
|+.+|..+|.+++|+|+.++|..++..++...+.. .+..++..+|.+++|.|+|+||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46788889999999999999999998888665433 34445777777777777777777653
No 16
>KOG0044|consensus
Probab=99.48 E-value=5.5e-13 Score=80.50 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=85.6
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhccc-------ccHHHhH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEE-------DDAEAMQ 74 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~-------~~~~~~~ 74 (131)
..+|..+|.+++|.|+..+|..+|..+-.....+.+.-.|+.||.+++|.|+++|++.++...... .......
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~ 146 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPE 146 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHH
Confidence 457999999999999999999998877655667777777999999999999999999998876432 1123456
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
.....+|+.+|.|++|.||.+||...+..
T Consensus 147 ~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 147 ERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 78899999999999999999999988763
No 17
>KOG0377|consensus
Probab=99.46 E-value=1.6e-12 Score=86.13 Aligned_cols=127 Identities=16% Similarity=0.296 Sum_probs=97.8
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccH--------HH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDA--------EA 72 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~--------~~ 72 (131)
.+.|.++|..++|+|+..++..++..+ |++++...+.. +......+|.+.|.+-...+......... .-
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 467999999999999999999999875 66665443332 22345667889998877765433221110 01
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAAL----DDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
....+..+|+.+|.+++|.|+.+||++++..+ ..+++++++.++.+.+|.|+||.|++
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDl 606 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDL 606 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccH
Confidence 23567889999999999999999999999985 45789999999999999999999985
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=2.7e-13 Score=72.59 Aligned_cols=66 Identities=14% Similarity=0.301 Sum_probs=59.7
Q ss_pred ChHHhhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc
Q psy3155 1 MRKAFQMFDT-AKTGFIDTLKISTILNT-MGQLFDD-TELQALIDENDPDATGKVNFDGFCRIATHFLE 66 (131)
Q Consensus 1 l~~~f~~~d~-~~~g~i~~~~l~~~l~~-l~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 66 (131)
|..+|..||+ +++|+|+..+|+.++.. +|-.++. +++..+++.+|.+++|.|+|+||+.++.....
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3578999999 99999999999999999 8876777 89999999999999999999999999887643
No 19
>KOG0027|consensus
Probab=99.46 E-value=9.7e-13 Score=77.60 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=85.7
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC-----HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFD-----DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEE 76 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~-----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 76 (131)
..++..+|.+++|.|+..+|..++...+...+ .+++...|+.+|.+++|.|+..++..++...-.. .+.+.
T Consensus 47 ~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~----~~~~e 122 (151)
T KOG0027|consen 47 RDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK----LTDEE 122 (151)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc----CCHHH
Confidence 46788899999999999999999988765433 4599999999999999999999999999988766 45688
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
+..+++..|.+++|+|+.++|..++..
T Consensus 123 ~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 123 CKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999999999888753
No 20
>PTZ00183 centrin; Provisional
Probab=99.44 E-value=3.1e-12 Score=75.84 Aligned_cols=98 Identities=26% Similarity=0.349 Sum_probs=82.6
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
..+|..+|.+++|.|+..+|..++... ....+...++.+|+.+|.+++|.|+..+|..++...... .....+..+
T Consensus 56 ~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~----l~~~~~~~~ 131 (158)
T PTZ00183 56 KQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGET----ITDEELQEM 131 (158)
T ss_pred HHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC----CCHHHHHHH
Confidence 457888999999999999999887653 334567789999999999999999999999998755322 345778999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHH
Q psy3155 81 FRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
|..+|.+++|.|+.++|..++..
T Consensus 132 ~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 132 IDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999998864
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.43 E-value=9.2e-13 Score=70.58 Aligned_cols=65 Identities=11% Similarity=0.342 Sum_probs=59.3
Q ss_pred ChHHhhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 1 MRKAFQMFD-TAKTG-FIDTLKISTILNT-----MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 1 l~~~f~~~d-~~~~g-~i~~~~l~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
+.++|..|| .+++| .|+..+|+.+|+. +|..++++++..+++.+|.+++|.|+|.+|+.++....
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 467899998 79999 5999999999999 89889999999999999999999999999998877653
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=3.7e-13 Score=72.04 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=53.6
Q ss_pred hHHHHHHHHhhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRLYDR-EGNGYITTATLREILAA-LDDKLNP-EDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~-~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....+..+|+.||. +++|+|+..||+.++.. +|..++. ++++++++.+|.|+||.|+|+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~ 67 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFE 67 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHH
Confidence 34678899999999 99999999999999999 8988888 999999999999999999984
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.40 E-value=7.6e-12 Score=73.35 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=81.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
..+|..+|.+++|.|+.++|..++... ........+..+|..+|.+++|.|+..+|..++...... .....+..+
T Consensus 50 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~~~ 125 (149)
T PTZ00184 50 QDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEK----LTDEEVDEM 125 (149)
T ss_pred HHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCC----CCHHHHHHH
Confidence 467888999999999999999988764 334456778999999999999999999999998765322 345778889
Q ss_pred HhhhCCCCCCcccHHHHHHHHH
Q psy3155 81 FRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~ 102 (131)
|..+|.+++|.|+.+||..++.
T Consensus 126 ~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 126 IREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHhcCCCCCCcCcHHHHHHHHh
Confidence 9999999999999999988764
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=72.67 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=83.8
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
.++|..+|. +++.|+..+|..++... ....+++++...|+.||.+++|.|+..+...++...-.. .+.+.+..+
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~----~~deev~~l 133 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGER----LSDEEVEKL 133 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhccc----CCHHHHHHH
Confidence 456778888 88999999999999764 456679999999999999999999999999998855333 567899999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHH
Q psy3155 81 FRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
++.+|.+++|.|+.++|.+.+..
T Consensus 134 l~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 134 LKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999988753
No 25
>KOG4223|consensus
Probab=99.36 E-value=3.4e-12 Score=81.34 Aligned_cols=130 Identities=17% Similarity=0.337 Sum_probs=101.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc-------cc---cHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLE-------ED---DAE 71 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~---~~~ 71 (131)
..++.++|.+++|.|+..++..++...-...-..+...-+..++.+.+|.|+|+++......... .. ..+
T Consensus 80 ~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~ 159 (325)
T KOG4223|consen 80 GKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYK 159 (325)
T ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHH
Confidence 45678899999999999999999876544445566777888899999999999999988775321 10 011
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALD-DKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.....-+..|+..|.+++|.++.+||..+|..-. ..+.+--|.+-+..+|+|+||.|+++
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~e 220 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLE 220 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHH
Confidence 2233457899999999999999999999998743 34555667888999999999999874
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.36 E-value=3e-12 Score=68.57 Aligned_cols=59 Identities=29% Similarity=0.609 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRLYD-REGNG-YITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....++.+|+.|| .+++| +|+.++|+.+|+. +|...++++++++++.+|.|++|.|+|+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~ 71 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQ 71 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 3467899999998 79999 5999999999999 8999999999999999999999999974
No 27
>KOG0034|consensus
Probab=99.35 E-value=3.8e-11 Score=72.51 Aligned_cols=102 Identities=19% Similarity=0.327 Sum_probs=86.5
Q ss_pred hHHhhhhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccH---HHhHHH
Q psy3155 2 RKAFQMFDTAKTGF-IDTLKISTILNTMGQLFDDT-ELQALIDENDPDATGKVNFDGFCRIATHFLEEDDA---EAMQEE 76 (131)
Q Consensus 2 ~~~f~~~d~~~~g~-i~~~~l~~~l~~l~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~---~~~~~~ 76 (131)
.+++..++.+++|. |+.++|...+.....+.+.. .++..|+.||.+++|.|+.+++..++......... .....-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 36788899988888 99999999998876555544 89999999999999999999999999998775322 344556
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
+...|..+|.+++|+|+.+|++.++..
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 778999999999999999999999875
No 28
>KOG0038|consensus
Probab=99.34 E-value=8.1e-12 Score=71.19 Aligned_cols=90 Identities=30% Similarity=0.575 Sum_probs=75.1
Q ss_pred HHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHH---
Q psy3155 38 QALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD-DKLNPEDL--- 113 (131)
Q Consensus 38 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~e~--- 113 (131)
+.+.+.+..++.|.++|++|+.+++.+.... +..-....+|+.||-+++++|...+|...+.++. ..++++|+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~A---PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMA---PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhC---hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 4666677789999999999999988875543 3445678899999999999999999999999974 56888885
Q ss_pred -HHHHHhhccCCCCcccc
Q psy3155 114 -DGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 114 -~~l~~~~d~~~~g~i~~ 130 (131)
+.++...|.++||++++
T Consensus 151 ~ekvieEAD~DgDgkl~~ 168 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSF 168 (189)
T ss_pred HHHHHHHhcCCCCCcccH
Confidence 45788889999999986
No 29
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.34 E-value=1.5e-11 Score=62.58 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=31.2
Q ss_pred HHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q psy3155 38 QALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREI 100 (131)
Q Consensus 38 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~ 100 (131)
+.+|+.+|.+++|.|+.+||..++...............+..+|+.+|++++|.|+.+||..+
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 445555555555555555555555544433222233344444555555555555555555544
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.32 E-value=1.6e-11 Score=62.59 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=56.4
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
++.+|..+|.+++|.|+.+++..++..+|. +.+++..++..++.+++|.|+|.+|+.++...
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467899999999999999999999999875 78889999999999999999999999987655
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.32 E-value=1.2e-11 Score=67.03 Aligned_cols=65 Identities=15% Similarity=0.384 Sum_probs=56.7
Q ss_pred ChHHhhhhc-CCCCCc-ccHHHHHHHHHH-cC----CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 1 MRKAFQMFD-TAKTGF-IDTLKISTILNT-MG----QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 1 l~~~f~~~d-~~~~g~-i~~~~l~~~l~~-l~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
++++|..|| .+++|+ |+..++..+|+. +| ..++.+++..++..+|.+++|.|+|.+|+.++....
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467899997 999994 999999999985 44 457899999999999999999999999999877664
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.31 E-value=1.7e-11 Score=59.96 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhh
Q psy3155 12 KTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATH 63 (131)
Q Consensus 12 ~~g~i~~~~l~~~l~~l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 63 (131)
++|.|+.++|..++..+|.. ++++++..++..+|.+++|.|+|.||+..+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999998754
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.31 E-value=1.1e-11 Score=67.38 Aligned_cols=64 Identities=14% Similarity=0.363 Sum_probs=56.7
Q ss_pred ChHHhhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 1 MRKAFQMFDT-AK-TGFIDTLKISTILNT-----MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 1 l~~~f~~~d~-~~-~g~i~~~~l~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
+..+|..||. ++ +|.|+..++..+++. +|..++.+++..++..+|.+++|.|+|.+|+.++...
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3578999997 87 699999999999986 5678899999999999999999999999999887655
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=2.5e-11 Score=65.01 Aligned_cols=63 Identities=16% Similarity=0.399 Sum_probs=56.3
Q ss_pred HHhhhhcC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 3 KAFQMFDT-AK-TGFIDTLKISTILN---TMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 3 ~~f~~~d~-~~-~g~i~~~~l~~~l~---~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
.+|..|+. ++ +|+|+.++|+.++. .+|..++++++..+++.+|.+++|.|+|.+|+..+....
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 57999998 66 89999999999996 368889999999999999999999999999998877653
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=3.6e-11 Score=65.21 Aligned_cols=64 Identities=11% Similarity=0.291 Sum_probs=54.8
Q ss_pred hHHhhhhc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 2 RKAFQMFD-TAKTG-FIDTLKISTILNT-M----GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 2 ~~~f~~~d-~~~~g-~i~~~~l~~~l~~-l----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
.++|+.|| .+++| +|+..+|..++.. + +...++.++..++..+|.+++|.|+|.||+.++..+.
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 46799999 68998 5999999999976 2 3345788999999999999999999999999987763
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.26 E-value=5.2e-11 Score=59.42 Aligned_cols=61 Identities=30% Similarity=0.639 Sum_probs=56.0
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 61 (131)
+..+|..+|.+++|.|+.+++..+++.++.+.+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999998764
No 37
>KOG0028|consensus
Probab=99.23 E-value=2.4e-10 Score=66.19 Aligned_cols=97 Identities=24% Similarity=0.340 Sum_probs=85.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILN-TMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~-~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
++...+|+++.|.|+.++|...+. .++..-+.+++...|+.+|.+.+|+|++.+|+.++..+... .+.+.+.++.
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen----ltD~El~eMI 148 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN----LTDEELMEMI 148 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc----ccHHHHHHHH
Confidence 355667888999999999998864 56777799999999999999999999999999998888655 5668899999
Q ss_pred hhhCCCCCCcccHHHHHHHHHH
Q psy3155 82 RLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~ 103 (131)
.-+|.+++|-|+.++|..+++.
T Consensus 149 eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 149 EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHhcccccccccHHHHHHHHhc
Confidence 9999999999999999988764
No 38
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=6.8e-11 Score=64.59 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
+.+|..+|.+++|.|+.+++..+++.+| ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 13 ~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 13 EQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5678888888888888888888888765 567788888888888888888888888776655
No 39
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=5.2e-11 Score=63.82 Aligned_cols=58 Identities=21% Similarity=0.485 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 74 QEELKEAFRLYDR-EG-NGYITTATLREILA---ALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 74 ~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~---~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
...+-.+|..||. ++ +|+|+.+||+.+++ .+|.+++++++.++++.+|.+++|.|+|+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~ 71 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQ 71 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHH
Confidence 3567789999987 66 89999999999997 37999999999999999999999999974
No 40
>PF14658 EF-hand_9: EF-hand domain
Probab=99.21 E-value=1.2e-10 Score=58.12 Aligned_cols=62 Identities=40% Similarity=0.615 Sum_probs=57.5
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHhhcCCCCC-CceeHhhHHHHHhhh
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQ-LFDDTELQALIDENDPDAT-GKVNFDGFCRIATHF 64 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~~ 64 (131)
.+|..||.++.|.|...++...|++++. .+++++++.+...+|.++. |.|+++.|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4699999999999999999999999988 8999999999999999887 999999999998753
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.20 E-value=7.6e-11 Score=63.39 Aligned_cols=64 Identities=16% Similarity=0.381 Sum_probs=55.8
Q ss_pred ChHHhhhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 1 MRKAFQMFDT--AKTGFIDTLKISTILNT-MGQL----FDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 1 l~~~f~~~d~--~~~g~i~~~~l~~~l~~-l~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
++.+|..+|+ +++|.|+..++..+++. +|.. ++.+++..++..++.+++|.|+|.+|+.++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568999999 89999999999999976 5543 458999999999999999999999999988765
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.19 E-value=9.3e-11 Score=63.79 Aligned_cols=59 Identities=24% Similarity=0.565 Sum_probs=52.6
Q ss_pred hHHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRLYDR-EG-NGYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....+..+|..+|. ++ +|+|+.+||+.+++. +|..++++++..+++.+|.+++|.|+|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~ 71 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFE 71 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHH
Confidence 35678999999997 87 799999999999986 5678899999999999999999999974
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.18 E-value=1.1e-10 Score=63.21 Aligned_cols=58 Identities=29% Similarity=0.617 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 74 QEELKEAFRLYD-REGNG-YITTATLREILAA-LD----DKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 74 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~~----~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
...++++|+.|| .+++| .|+..+|+.+|+. +| ...+++++..+++.+|.+++|.|+|+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~ 72 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQ 72 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHH
Confidence 467999999997 99999 5999999999986 54 35689999999999999999999974
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=2e-10 Score=58.53 Aligned_cols=51 Identities=31% Similarity=0.432 Sum_probs=38.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
+.+|..+|.+++|.|+.+|+..++...| ++++++..+++.++.+++|.|+|
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~ 52 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDK 52 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCH
Confidence 4567777777777777777777777766 36777777777777777777765
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.13 E-value=2.2e-10 Score=62.13 Aligned_cols=58 Identities=28% Similarity=0.580 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 74 QEELKEAFRLYD-REGNG-YITTATLREILAA-L----DDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 74 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
...+..+|+.|| .+++| +|+.+||+.++.. + +...++.++.++++.+|.|++|.|+|+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~ 73 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFN 73 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHH
Confidence 356788899999 78998 5999999999977 3 345588899999999999999999984
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=4.3e-10 Score=61.40 Aligned_cols=55 Identities=27% Similarity=0.371 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
...++.+|..+|.+++|.|+.++++.+++..| ++++++..++..+|.+++|.|+|
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~ 63 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDK 63 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCH
Confidence 34566666666666666666666666666654 55666666666666666666664
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=6.2e-10 Score=59.75 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=53.3
Q ss_pred hHHhhh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 2 RKAFQM-FDTAKTG-FIDTLKISTILNTM-----GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 2 ~~~f~~-~d~~~~g-~i~~~~l~~~l~~l-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
..+|.. +|.+++| .|+.+||..++..- +...++.++..+++.+|.+++|.|+|+||+.++....
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 467888 6777765 99999999999875 3345678999999999999999999999999887663
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=3.6e-10 Score=60.76 Aligned_cols=60 Identities=27% Similarity=0.544 Sum_probs=52.1
Q ss_pred HhHHHHHHHHhhhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhccCCCCccccC
Q psy3155 72 AMQEELKEAFRLYDR--EGNGYITTATLREILAA-LDDK----LNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~--~~~g~i~~~el~~~l~~-~~~~----~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.....++.+|..+|. +++|.|+.++|..+++. +|.. .+..++..++..+|.+++|.|+|+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~ 71 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQ 71 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHH
Confidence 345678999999999 89999999999999986 5544 459999999999999999999874
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=99.10 E-value=1e-09 Score=77.19 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=80.1
Q ss_pred CcccHHHHHHHHHH--cCC-CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCC
Q psy3155 14 GFIDTLKISTILNT--MGQ-LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNG 90 (131)
Q Consensus 14 g~i~~~~l~~~l~~--l~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 90 (131)
..++.+++...... ..+ ....+++...|..+|.+++|.+ ... ++...............++.+|+.+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~---ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGS---IFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHH---HHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 35566655544322 111 1123556778888999999986 333 3333321110011223489999999999999
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.|+.+||..++..++...+++++.++|+.+|.+++|.|+++
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~d 235 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTID 235 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHH
Confidence 99999999999999988899999999999999999999863
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.09 E-value=2e-10 Score=56.09 Aligned_cols=43 Identities=40% Similarity=0.672 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhccCCCCcccc
Q psy3155 88 GNGYITTATLREILAALDDK-LNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~-~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
++|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~ 44 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISF 44 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCH
Confidence 36778888888888777877 88888888888888888888876
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.05 E-value=1e-09 Score=54.64 Aligned_cols=54 Identities=44% Similarity=0.921 Sum_probs=39.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
+..+|..+|.+++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDF 55 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeH
Confidence 455677777777777777777777777777777777777777777777777765
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=1.8e-09 Score=60.61 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=46.5
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.....+..+|..+|.|++|+|+.+||..+. ....+..+..++..+|.|+||.||++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~ 100 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLD 100 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHH
Confidence 445778899999999999999999999876 23457778889999999999999873
No 53
>KOG2562|consensus
Probab=98.98 E-value=3.1e-09 Score=71.06 Aligned_cols=119 Identities=17% Similarity=0.318 Sum_probs=91.7
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh----cCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDE----NDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~----~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
|..+|++++|.|+.+++...-.. ..+.-.+.++|.. .-...+|+++|++|+.++.+.... .+...+...
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k----~t~~SleYw 356 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK----DTPASLEYW 356 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC----CCccchhhh
Confidence 67789999999999998765433 3456677888882 334568899999999999988766 455789999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHH-------cC-CCCC-HHHHHHHHHhhccCCCCcccc
Q psy3155 81 FRLYDREGNGYITTATLREILAA-------LD-DKLN-PEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~-------~~-~~~~-~~e~~~l~~~~d~~~~g~i~~ 130 (131)
|+.+|.+++|.++..|++-+... +| .+++ ++-+++++..+.+...+.|++
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItL 415 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITL 415 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeH
Confidence 99999999999999999877765 23 2333 444567777777777888875
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=2.9e-09 Score=57.17 Aligned_cols=63 Identities=8% Similarity=0.345 Sum_probs=53.3
Q ss_pred hHHhhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTA--KTGFIDTLKISTILN-TMGQLFD----DTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~--~~g~i~~~~l~~~l~-~l~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
-.+|..++.. ++|.|+.++|..++. .+|..++ ++++..++..+|.+++|.|+|++|+.++...
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3578888865 478999999999996 5555555 8999999999999999999999999988765
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.96 E-value=3e-09 Score=57.10 Aligned_cols=59 Identities=19% Similarity=0.455 Sum_probs=50.6
Q ss_pred hHHHHHHHHhh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRL-YDREGNG-YITTATLREILAAL-----DDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~-~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....+..+|+. +|.+++| +|+.+||+.++... +...++.++.++++.+|.|+||.|+|+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~ 72 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQ 72 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHH
Confidence 34678889999 6777876 99999999999985 456778999999999999999999984
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.94 E-value=3.9e-09 Score=59.26 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
.....+.-.|..+|.+++|.|+..|+..+. . . .....+...|..+|.+++|.||.+|+..++..
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~-----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D-----PNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c-----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 345667777888888888888888887765 1 1 23466677888888888888888888877764
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=98.90 E-value=3.9e-09 Score=52.74 Aligned_cols=51 Identities=29% Similarity=0.594 Sum_probs=41.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhccCCC-Ccccc
Q psy3155 80 AFRLYDREGNGYITTATLREILAALDD-KLNPEDLDGIIQEIDTDGS-GTVDF 130 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~e~~~l~~~~d~~~~-g~i~~ 130 (131)
+|..+|+++.|.|...++..+|+.++. ..++.+++.+.+.+|+++. |.|++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 688888888888888888888888877 7788888888888888776 77765
No 58
>KOG0040|consensus
Probab=98.89 E-value=2.4e-08 Score=74.91 Aligned_cols=111 Identities=24% Similarity=0.426 Sum_probs=89.7
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFD-------DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQ 74 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 74 (131)
.-+|.+||++.+|.++..+|..+|+++|+.++ +.+++.++..+|++.+|.|+..+|..+|...-.... ...
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI--~s~ 2333 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI--LSS 2333 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc--cch
Confidence 35799999999999999999999999998762 447999999999999999999999999887644321 223
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
+.+..+|+.+|. +..+|+..++... ++++++.-.++.+.+
T Consensus 2334 ~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~ 2373 (2399)
T KOG0040|consen 2334 EEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKP 2373 (2399)
T ss_pred HHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhh
Confidence 489999999998 8889998887654 566766666655543
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.86 E-value=5.6e-09 Score=44.07 Aligned_cols=28 Identities=43% Similarity=0.822 Sum_probs=22.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAAL 104 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~~ 104 (131)
++.+|+.+|.|++|+|+.+||..+++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 5678888888888888888888887653
No 60
>KOG0036|consensus
Probab=98.85 E-value=3.2e-08 Score=65.55 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=77.4
Q ss_pred HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q psy3155 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDL 113 (131)
Q Consensus 34 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~ 113 (131)
+..++.+|+.+|.+++|.++..+....+....++. ...+..+.+|+..|.+.+|.++..+|++++. ..+.++
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~---~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l 84 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPK---PNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELEL 84 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCC---CchHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHH
Confidence 34578999999999999999999998888776663 5567889999999999999999999999987 466778
Q ss_pred HHHHHhhccCCCCccc
Q psy3155 114 DGIIQEIDTDGSGTVD 129 (131)
Q Consensus 114 ~~l~~~~d~~~~g~i~ 129 (131)
..+|.++|.++||.|+
T Consensus 85 ~~~F~~iD~~hdG~i~ 100 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKID 100 (463)
T ss_pred HHHHhhhccccCCccC
Confidence 8999999999999986
No 61
>KOG0041|consensus
Probab=98.84 E-value=2.8e-08 Score=59.91 Aligned_cols=97 Identities=22% Similarity=0.343 Sum_probs=74.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHH-
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA- 80 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~- 80 (131)
..+|..+|.+.+|+|+..|+..++..||.+-|---++.+++..|.+.+|+|+|.+|+-++........ .....+..+
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL--~~ds~~~~LA 179 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGEL--QEDSGLLRLA 179 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccc--ccchHHHHHH
Confidence 46799999999999999999999999999888777899999999999999999999999876654321 111222222
Q ss_pred -HhhhCCCCCCcccHHHHHHH
Q psy3155 81 -FRLYDREGNGYITTATLREI 100 (131)
Q Consensus 81 -f~~~D~~~~g~i~~~el~~~ 100 (131)
....|-...|.-....|-.+
T Consensus 180 r~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 180 RLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HhcccchhhhhhhhHHHHHHH
Confidence 23367777887777666544
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.80 E-value=1.9e-08 Score=53.98 Aligned_cols=59 Identities=19% Similarity=0.433 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRLYDRE--GNGYITTATLREILA-ALDDKLN----PEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~--~~g~i~~~el~~~l~-~~~~~~~----~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....+...|..|+.. ++|+|+.+||+.++. .+|..++ +.+++.++..+|.+++|.|+|+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~ 71 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFE 71 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHH
Confidence 345678889999865 489999999999997 5676666 9999999999999999999974
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.77 E-value=1.6e-08 Score=43.51 Aligned_cols=30 Identities=43% Similarity=0.936 Sum_probs=26.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-HcC
Q psy3155 76 ELKEAFRLYDREGNGYITTATLREILA-ALD 105 (131)
Q Consensus 76 ~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~ 105 (131)
+++.+|+.+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 368899999999999999999999998 565
No 64
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.70 E-value=1.7e-08 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.2
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNT 27 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~ 27 (131)
+.+|+.+|++++|+|+.+||..+++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 56777777777777777777777765
No 65
>KOG0031|consensus
Probab=98.62 E-value=2.5e-07 Score=53.60 Aligned_cols=60 Identities=33% Similarity=0.563 Sum_probs=40.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHh
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIAT 62 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 62 (131)
.+|..||.+++|.|+.+.++.+|...|-+.+++++..+|+.+..+..|.++|..|+.++.
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 456666666677777777777776666666777777777766666666677776666654
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.62 E-value=4e-07 Score=48.69 Aligned_cols=62 Identities=16% Similarity=0.393 Sum_probs=50.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNT-----MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
.+|..|.. +.+.++..||..++.. +.-...+..+..+++.+|.+++|.|+|.||+.++....
T Consensus 12 ~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 12 LTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 56888874 3569999999998854 23344678899999999999999999999999987764
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.58 E-value=6e-08 Score=41.66 Aligned_cols=29 Identities=45% Similarity=0.864 Sum_probs=24.6
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHH-HcC
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILN-TMG 29 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~-~l~ 29 (131)
++.+|..+|.+++|+|+.+||..+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 46789999999999999999999998 565
No 68
>KOG0038|consensus
Probab=98.58 E-value=1.5e-06 Score=50.07 Aligned_cols=101 Identities=11% Similarity=0.180 Sum_probs=78.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHH-HhHHHHHHH
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAE-AMQEELKEA 80 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~-~~~~~~~~~ 80 (131)
++...|..++.|.++.++|..++..+. ..+-.-.+...|+.||-++++.|.-++....+..+......+ ...--...+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 466778899999999999999987763 334455567888899999999999999988888776553221 222344677
Q ss_pred HhhhCCCCCCcccHHHHHHHHHH
Q psy3155 81 FRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
....|.+++|.++..+|..++..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHh
Confidence 88889999999999999998865
No 69
>KOG0041|consensus
Probab=98.57 E-value=1.8e-07 Score=56.48 Aligned_cols=57 Identities=25% Similarity=0.530 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
...+..+|+.||.+.+|+|+..||+.+|..+|.+=+.--+..++...|-|.+|+||+
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSf 154 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSF 154 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhH
Confidence 356788999999999999999999999999999888888999999999999999985
No 70
>KOG0030|consensus
Probab=98.53 E-value=4.2e-07 Score=51.79 Aligned_cols=58 Identities=22% Similarity=0.527 Sum_probs=51.2
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHh
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIAT 62 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 62 (131)
-...||++++|.|+..+|+.+|..+|-.++++++..++... .+.+|.|+|+.|+..+.
T Consensus 93 gLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 93 GLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 35679999999999999999999999999999999999875 46789999999987653
No 71
>KOG2643|consensus
Probab=98.50 E-value=4.9e-07 Score=60.48 Aligned_cols=117 Identities=17% Similarity=0.285 Sum_probs=54.2
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHc-CCCCCHH--HHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTM-GQLFDDT--ELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~--~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
|..+|+..+|.|+..+|..++-.. +.+.... .++.+-+.+... ...|++.||.++..-..+. ..+..+.
T Consensus 324 F~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l-------~dfd~Al 395 (489)
T KOG2643|consen 324 FERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL-------NDFDIAL 395 (489)
T ss_pred HHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh-------hHHHHHH
Confidence 566666666777777776665443 2322221 234555555444 3347777776664443221 1111222
Q ss_pred hhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 82 RLYDREGNGYITTATLREILAA-LDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
..| ....+.|+..+|+++-.. .|..+++.-++-+|.-||.|+||.+|+
T Consensus 396 ~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~ 444 (489)
T KOG2643|consen 396 RFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSH 444 (489)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccH
Confidence 222 111223444444333333 244444444444555555566665553
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.48 E-value=1.1e-06 Score=41.60 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 15 FIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 15 ~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
.++..|+..+|+.+++.+++..+..+|+..|++++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999999988887643
No 73
>KOG4251|consensus
Probab=98.47 E-value=6.2e-07 Score=55.99 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=35.9
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM---GQLFDDTELQALIDENDPDATGKVNFDGFCRI 60 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 60 (131)
+.+|.+.|-+.+|.|+..++..++..- .+.-..++.+..|...|.+++|.|+|++|..-
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 346777777777777777776665431 11122334455566667777777777777643
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.47 E-value=2.8e-07 Score=37.46 Aligned_cols=25 Identities=32% Similarity=0.753 Sum_probs=20.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH
Q psy3155 77 LKEAFRLYDREGNGYITTATLREIL 101 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l 101 (131)
++.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568889999999999999988753
No 75
>KOG2643|consensus
Probab=98.46 E-value=3.9e-06 Score=56.34 Aligned_cols=94 Identities=29% Similarity=0.442 Sum_probs=70.5
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHH------cCCC----CC-----HHHH--HHHHhhcCCCCCCceeHhhHHHHHhhhcc
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNT------MGQL----FD-----DTEL--QALIDENDPDATGKVNFDGFCRIATHFLE 66 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~------l~~~----~~-----~~~~--~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 66 (131)
+|..||.|+||.|+.+||....+. +|.. ++ ..++ ..+...|.+++++++++++|+.++..+..
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~ 317 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQE 317 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHH
Confidence 588999999999999999877642 2221 00 1111 12233468899999999999999887743
Q ss_pred cccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 67 EDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 67 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
+-++.-|..+|+..+|.|+..+|-.++-.+.
T Consensus 318 --------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 318 --------EILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred --------HHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 5677889999999999999999988887643
No 76
>KOG0751|consensus
Probab=98.36 E-value=1.1e-06 Score=59.83 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=41.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCC
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGS 125 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~ 125 (131)
+..+++|+..|..++|+|+.-++..++.....++....+++.+-......+
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~ 229 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGND 229 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCC
Confidence 457889999999999999999999999998888777777776665543333
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.33 E-value=3.4e-06 Score=45.13 Aligned_cols=57 Identities=21% Similarity=0.504 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-----~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
...+..+|..|. .+.++++..||+..+.. ++..-.++.++.+++.+|.|+||.|+|+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~ 68 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQ 68 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 356777888886 45678999999999977 3455678889999999999999999873
No 78
>KOG0377|consensus
Probab=98.33 E-value=2.3e-06 Score=57.71 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=50.7
Q ss_pred CHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 33 DDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 33 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
....+..+|...|.+.+|.|+.+||...+..+...-..+.....+.++-+.+|.|++|+|+.+||..+++...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 3455667777777777888888888777665544322235556777777778888888888888877777643
No 79
>KOG0169|consensus
Probab=98.32 E-value=8.1e-06 Score=58.22 Aligned_cols=115 Identities=21% Similarity=0.374 Sum_probs=98.6
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
..+|...|.+++|.++..+...++..+...+....+..+++..+..+.+++...+|..+....... ..+..+|
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-------pev~~~f 211 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-------PEVYFLF 211 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-------chHHHHH
Confidence 467889999999999999999999999988988899999999888899999999999987777543 3788888
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhccCC
Q psy3155 82 RLYDREGNGYITTATLREILAALD--DKLNPEDLDGIIQEIDTDG 124 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~e~~~l~~~~d~~~ 124 (131)
..+. ++.++++.++|..++.... ..++.+.+.++++.+....
T Consensus 212 ~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k 255 (746)
T KOG0169|consen 212 VQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSK 255 (746)
T ss_pred HHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhh
Confidence 8884 4489999999999999964 4688999999998886543
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.31 E-value=3.9e-06 Score=46.29 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=49.2
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
..+|..++. ++|.|+-.+...++...+ ++.+.+..+|...|.+++|.+++.||+-.+...
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 356777775 579999999999988877 556889999999999999999999999887654
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.22 E-value=1.2e-06 Score=35.55 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=16.1
Q ss_pred hHHhhhhcCCCCCcccHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTI 24 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~ 24 (131)
++.|..+|.+++|.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777654
No 82
>KOG4666|consensus
Probab=98.21 E-value=4.7e-06 Score=54.10 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=81.2
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKE 79 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
++..|..||..++|.++..+....+..+ |-..++..++..|+.|+...+|.+.-.+|..+++....- ..-.+.-
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-----~~l~v~~ 335 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV-----EVLRVPV 335 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc-----ceeeccc
Confidence 3567899999999999999888888776 456778889999999999999999888888887776553 2334667
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 80 AFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
.|...+...+|+|+..+|+++....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999999999999999999887643
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.21 E-value=1.2e-05 Score=54.35 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
......+..+|+.+|.+++|.|+..||.. ...+|..+|.|++|.|+.+||...+.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-----------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-----------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 34445555566666666666666666531 23456666666666666666665554
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.10 E-value=2.4e-05 Score=37.10 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred ceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy3155 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 104 (131)
+++|.|...++....-. ........+|+..|.+++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~----~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIE----MDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT--------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccC----cCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36777777777666443 455777889999999999999999988887653
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.09 E-value=8e-06 Score=55.12 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=44.6
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
..+|..+|.+++|.|+.+||.. +..+|..+|.+++|.|+++||...+....
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999842 46789999999999999999999887653
No 86
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.99 E-value=0.00017 Score=43.05 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=72.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcC---CCCCCceeHhhH---HHHHhhhccc-------cc
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEND---PDATGKVNFDGF---CRIATHFLEE-------DD 69 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d---~~~~~~i~~~ef---~~~~~~~~~~-------~~ 69 (131)
+=..-||+|++|.|..-+-...++.+|+.+--+.+..++--.. ....+.+.-.-| +.-+....+. ..
T Consensus 11 qHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~e 90 (174)
T PF05042_consen 11 QHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTE 90 (174)
T ss_pred hhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccC
Confidence 3345689999999999999999999998864443322221110 011111111001 1111111110 01
Q ss_pred HHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-------CCCCHHHHHHHHHhhccCCCCccc
Q psy3155 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAALD-------DKLNPEDLDGIIQEIDTDGSGTVD 129 (131)
Q Consensus 70 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-------~~~~~~e~~~l~~~~d~~~~g~i~ 129 (131)
..-..+.+.++|..++..+.+.+|..|+.++++... -..+.-|...+.... .+++|.++
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~ 156 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLS 156 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEe
Confidence 123557788899999998888899999999998732 223445555554433 45677664
No 87
>KOG4666|consensus
Probab=97.88 E-value=1.9e-05 Score=51.42 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHH
Q psy3155 35 TELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA-LDDKLNPEDL 113 (131)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~ 113 (131)
..+..+|..||.+.+|.++|.+....+.....+. .+...++.+|+.|+...+|.+...+|..+|+. +|. ..-.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~---~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v 333 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPP---VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRV 333 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCC---CcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeec
Confidence 4567889999999999999999998887777765 66788999999999999999999999988887 452 22334
Q ss_pred HHHHHhhccCCCCcccc
Q psy3155 114 DGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 114 ~~l~~~~d~~~~g~i~~ 130 (131)
-.++.+++...+|+|+|
T Consensus 334 ~~lf~~i~q~d~~ki~~ 350 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYA 350 (412)
T ss_pred cccchhhhcccCcceeH
Confidence 55677777777777765
No 88
>KOG2562|consensus
Probab=97.84 E-value=0.00014 Score=49.46 Aligned_cols=122 Identities=18% Similarity=0.316 Sum_probs=86.3
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHH--HHc---C---------CCCCHHHHHHH---HhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTIL--NTM---G---------QLFDDTELQAL---IDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l--~~l---~---------~~~~~~~~~~~---~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
.++|-.+++..+|.|+..++.... ..+ . --.+-+....+ |..+|.+.+|.|+-++........
T Consensus 228 ~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t 307 (493)
T KOG2562|consen 228 QRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT 307 (493)
T ss_pred hhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc
Confidence 467888899999999998875422 111 1 01222333333 666677778877777755443333
Q ss_pred cccccHHHhHHHHHHHHh----hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 65 LEEDDAEAMQEELKEAFR----LYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 65 ~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
.+..-+.++|+ .+-...+|.|+.++|..++.++-.+-++.-+...|+.+|.+++|.++.
T Consensus 308 -------lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~ 370 (493)
T KOG2562|consen 308 -------LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTL 370 (493)
T ss_pred -------hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccH
Confidence 23456677888 344567889999999999999988888888999999999999999873
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.75 E-value=5.3e-06 Score=46.54 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHH
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLRE 99 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~ 99 (131)
..-...+.-.|..+|.+++|.++-.|...+...+.. ...-++..|+..|.+++|.||..|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345667778888999999999999998877664422 235678899999999999999999864
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.70 E-value=7.6e-06 Score=45.91 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=42.8
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
.....+...|..+|.+++|.|+..|+..+...+ ...+..+..++...|.|+||.||.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~ 107 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISL 107 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCH
Confidence 345778899999999999999999999887655 455667899999999999999985
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.67 E-value=0.00024 Score=39.28 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 36 ELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
....+|...+ .++|.|+-.+-..++.. .. -....+..+|...|.+++|+++.+||.-++..
T Consensus 11 ~y~~~F~~l~-~~~g~isg~~a~~~f~~---S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 11 KYDQIFQSLD-PQDGKISGDQAREFFMK---SG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHCTS-SSTTEEEHHHHHHHHHH---TT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCCeEeHHHHHHHHHH---cC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3456666655 47777777776655432 22 45577788888888888888888888777654
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.62 E-value=0.00011 Score=29.96 Aligned_cols=27 Identities=48% Similarity=0.929 Sum_probs=20.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456788888888888888888877754
No 93
>KOG0046|consensus
Probab=97.62 E-value=0.00022 Score=49.36 Aligned_cols=64 Identities=20% Similarity=0.458 Sum_probs=55.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQL---FDDTELQALIDENDPDATGKVNFDGFCRIATHFLE 66 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 66 (131)
+..|...| +++|+++..++..++...+.. ...++++.+....+.+.+|.|+|++|+.++.....
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 46788899 899999999999999988754 34889999999999999999999999998776644
No 94
>KOG0751|consensus
Probab=97.61 E-value=0.00088 Score=46.33 Aligned_cols=91 Identities=18% Similarity=0.336 Sum_probs=67.2
Q ss_pred hcCCCCCcccHHHHHHHHHH-cCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhC
Q psy3155 8 FDTAKTGFIDTLKISTILNT-MGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~-l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D 85 (131)
.+.++..+++.++|....-. ++.+ .+++.++.+-...|...+|-|+|.||+.+-.....+ ......+|..||
T Consensus 45 ~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p------Dal~~~aFqlFD 118 (694)
T KOG0751|consen 45 IEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP------DALFEVAFQLFD 118 (694)
T ss_pred HhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc------hHHHHHHHHHhc
Confidence 34566678888888665443 3433 444444555555677889999999999886666554 356778999999
Q ss_pred CCCCCcccHHHHHHHHHHc
Q psy3155 86 REGNGYITTATLREILAAL 104 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~ 104 (131)
..++|.+|.+++..++...
T Consensus 119 r~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 119 RLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ccCCCceehHHHHHHHhcc
Confidence 9999999999999999863
No 95
>KOG0040|consensus
Probab=97.61 E-value=0.00042 Score=53.52 Aligned_cols=88 Identities=15% Similarity=0.341 Sum_probs=69.9
Q ss_pred HHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccc---cHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC--CCCC
Q psy3155 35 TELQALIDENDPDATGKVNFDGFCRIATHFLEED---DAEAMQEELKEAFRLYDREGNGYITTATLREILAALD--DKLN 109 (131)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~ 109 (131)
.+...+|+.||.+.+|.+++.+|...+...-..- ....+.+.++......||+.+|+|+..+-..+|-.-- .-.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 3457889999999999999999999988763321 1113345899999999999999999999999988732 2356
Q ss_pred HHHHHHHHHhhcc
Q psy3155 110 PEDLDGIIQEIDT 122 (131)
Q Consensus 110 ~~e~~~l~~~~d~ 122 (131)
.++|...|+.++.
T Consensus 2333 ~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA 2345 (2399)
T ss_pred hHHHHHHHHHhhc
Confidence 6799999999887
No 96
>KOG4251|consensus
Probab=97.54 E-value=0.00045 Score=43.58 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy3155 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104 (131)
Q Consensus 34 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 104 (131)
...+..+|.+.|.+.+++|+-.+....+......+- +...+..+..|+..|++++|.|+++|++--+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHf-qeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHF-QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHH-HHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 456788999999999999999998888776544321 1234556778999999999999999997666553
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.47 E-value=0.0002 Score=29.10 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=17.7
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHH
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNT 27 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~ 27 (131)
+.+|..+|.+++|.|+..+|..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45677777777777777777766653
No 98
>KOG0046|consensus
Probab=97.30 E-value=0.0008 Score=46.74 Aligned_cols=58 Identities=29% Similarity=0.518 Sum_probs=35.1
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhccCCCCccccC
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDK---LNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
....+++.|...| +++|+|+..++..++...+.. ...+++++++...+.|.+|+|++|
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe 77 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFE 77 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHH
Confidence 3445566666666 666666666666666665433 245666666666666666666553
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.07 E-value=0.0012 Score=34.83 Aligned_cols=62 Identities=18% Similarity=0.441 Sum_probs=42.8
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHhhcCCC----CCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMG-Q-LFDDTELQALIDENDPD----ATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~-~-~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~~ 64 (131)
..+|..+.. +.+.|+.++|..+|+.-. - ..+.+++..++..+..+ ..+.+++.+|...+...
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 567777744 677888888888887652 2 35777777777776433 35678888888776654
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.04 E-value=0.0015 Score=34.54 Aligned_cols=46 Identities=26% Similarity=0.568 Sum_probs=36.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH-cCC-CCCHHHHHHHHHhhccC
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAA-LDD-KLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~-~~~~~e~~~l~~~~d~~ 123 (131)
+..+|..+.. +.+.|+.++|.++|.. -+. .++.+++..++..+.++
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~ 49 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPD 49 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccc
Confidence 6778888854 7889999999999987 344 57899999999888654
No 101
>KOG4065|consensus
Probab=96.99 E-value=0.0023 Score=35.64 Aligned_cols=52 Identities=17% Similarity=0.428 Sum_probs=39.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHHH----HHhhccCCCCcccc
Q psy3155 79 EAFRLYDREGNGYITTATLREILAAL------DD---K-LNPEDLDGI----IQEIDTDGSGTVDF 130 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~------~~---~-~~~~e~~~l----~~~~d~~~~g~i~~ 130 (131)
..|++.|.+++|.++--|+.+++.-. |- + .++.|+..+ ++.-|.|+||.|+|
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 47888999999999999999888763 21 2 356665554 55568899999997
No 102
>KOG0035|consensus
Probab=96.88 E-value=0.0075 Score=44.80 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=72.9
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDD-----TELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQE 75 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 75 (131)
++..|+.+++...|.++.+++..+|-.+|.+.-. +++..+....+....|.+++.+|...+....... ....
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l---~~~~ 825 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL---DTEL 825 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh---cHHH
Confidence 3567899999999999999999999999987653 2334444444555568899999999988776554 5667
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHH
Q psy3155 76 ELKEAFRLYDREGNGYITTATLRE 99 (131)
Q Consensus 76 ~~~~~f~~~D~~~~g~i~~~el~~ 99 (131)
.+..+|+.+-+++. +|..+||.+
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 78888998865555 788888887
No 103
>KOG1029|consensus
Probab=96.81 E-value=0.02 Score=42.13 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
-..+.+|+.+|+..+|+++..+-+.+|...+ ++...+..|...-|.|+||+++-
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~ 248 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSA 248 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccH
Confidence 3568899999999999999999999998777 77888888888889999998863
No 104
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.70 E-value=0.012 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.319 Sum_probs=49.3
Q ss_pred hHHhhhh---cCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc
Q psy3155 2 RKAFQMF---DTAKTGFIDTLKISTILNTMGQ---LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLE 66 (131)
Q Consensus 2 ~~~f~~~---d~~~~g~i~~~~l~~~l~~l~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 66 (131)
+.+|..| -......++...|..+++..++ .++...+.-+|..+-..+...|+|++|+..+..+..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 4566655 3445678999999999998765 478999999999986666678999999999887643
No 105
>KOG1029|consensus
Probab=96.25 E-value=0.0082 Score=43.96 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=51.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATH 63 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 63 (131)
+.+|+.+|+..+|+++-.+-+.+|-..++ +-..+..+|..-|.++||+++-+||+-.+..
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 56899999999999999999999887774 4557788898889999999999999977554
No 106
>KOG1707|consensus
Probab=96.24 E-value=0.059 Score=38.53 Aligned_cols=106 Identities=17% Similarity=0.376 Sum_probs=70.3
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHhhcC---CC--CCCceeHhhHHHHHhhhc---------
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILN-TMGQLFDDTELQALIDEND---PD--ATGKVNFDGFCRIATHFL--------- 65 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~-~l~~~~~~~~~~~~~~~~d---~~--~~~~i~~~ef~~~~~~~~--------- 65 (131)
|.++|...|.+.+|.++-.|+..+=. .++.++...++..+-...+ .+ .+..++...|+-+...+.
T Consensus 197 l~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW 276 (625)
T KOG1707|consen 197 LKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTW 276 (625)
T ss_pred HHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchh
Confidence 35789999999999999999865543 3566666666544444332 11 244566777765422211
Q ss_pred -------------------ccc----------cHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC
Q psy3155 66 -------------------EED----------DAEAMQEELKEAFRLYDREGNGYITTATLREILAALDD 106 (131)
Q Consensus 66 -------------------~~~----------~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 106 (131)
++. ..+.-..-+..+|..+|.+++|.++..|+...+...+.
T Consensus 277 ~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 277 TILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred hhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 000 00122356788999999999999999999999998653
No 107
>KOG4065|consensus
Probab=96.02 E-value=0.039 Score=30.95 Aligned_cols=57 Identities=23% Similarity=0.525 Sum_probs=38.2
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHc------CC-C---CCHHHHHH----HHhhcCCCCCCceeHhhHHHH
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTM------GQ-L---FDDTELQA----LIDENDPDATGKVNFDGFCRI 60 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l------~~-~---~~~~~~~~----~~~~~d~~~~~~i~~~ef~~~ 60 (131)
.|...|.++++.|+--|+..++... |. + +++.++.. +++.-|.+++|.|+|-||+..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5778899999999998888877532 22 1 23444443 344446778888888888753
No 108
>KOG4347|consensus
Probab=95.80 E-value=0.03 Score=40.23 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHcC-CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccH
Q psy3155 16 IDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITT 94 (131)
Q Consensus 16 i~~~~l~~~l~~l~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 94 (131)
|+..++..+++.+- -..+..-+..+|...|...+|.++|.+++..+...... ...+.+.-+|+.+|++++ ....
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~----~~~ek~~l~y~lh~~p~~-~~d~ 609 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG----DALEKLKLLYKLHDPPAD-ELDR 609 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh----hHHHHHHHHHhhccCCcc-cccc
Confidence 44455555554432 12345557889999999999999999999998888776 556788999999999988 7777
Q ss_pred HHH
Q psy3155 95 ATL 97 (131)
Q Consensus 95 ~el 97 (131)
++.
T Consensus 610 e~~ 612 (671)
T KOG4347|consen 610 EEV 612 (671)
T ss_pred ccc
Confidence 766
No 109
>KOG0169|consensus
Probab=95.73 E-value=0.13 Score=37.77 Aligned_cols=82 Identities=11% Similarity=0.248 Sum_probs=65.1
Q ss_pred CHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy3155 33 DDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED 112 (131)
Q Consensus 33 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e 112 (131)
...++..++...|.+++|.+++.+-..++...... .....++..|+..+..+++.+..+++..+....+.+. +
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~----l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---e 206 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ----LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---E 206 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHh----hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---h
Confidence 46678999999999999999999998887776554 4556778888888888999999999999988776544 5
Q ss_pred HHHHHHhhc
Q psy3155 113 LDGIIQEID 121 (131)
Q Consensus 113 ~~~l~~~~d 121 (131)
+..++..+.
T Consensus 207 v~~~f~~~s 215 (746)
T KOG0169|consen 207 VYFLFVQYS 215 (746)
T ss_pred HHHHHHHHh
Confidence 666555554
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=95.70 E-value=0.092 Score=37.97 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=49.6
Q ss_pred CCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhh
Q psy3155 48 ATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD-D-KLNPEDLDGIIQEI 120 (131)
Q Consensus 48 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~-~~~~~e~~~l~~~~ 120 (131)
..|.++|++|..++..+..... .....+..+|..+.. +.+.|+.++|.++|.... . ..+.+++..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~--~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEA--EPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV 84 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccC--CChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 3578999999888776643210 235788999999954 446899999999999853 3 36777777776554
No 111
>KOG1265|consensus
Probab=95.41 E-value=0.44 Score=36.13 Aligned_cols=107 Identities=15% Similarity=0.298 Sum_probs=72.5
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcC--CCCCC-----ceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 9 DTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEND--PDATG-----KVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 9 d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d--~~~~~-----~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
..+..|.|....+...+.+ .-++.-+........ .+.+. ..+++.|..++..+... ..+..+|
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR-------~eie~iF 227 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR-------PEIEEIF 227 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc-------hhHHHHH
Confidence 3456788887776666543 222233333333321 22222 35567777777776443 6899999
Q ss_pred hhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhccCCC
Q psy3155 82 RLYDREGNGYITTATLREILAA----------LDDKLNPEDLDGIIQEIDTDGS 125 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~----------~~~~~~~~e~~~l~~~~d~~~~ 125 (131)
..+..++..++|.++|..++.. +-..+.+..+..|++.+.++.+
T Consensus 228 ~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 228 RKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred HHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 9999888899999999999986 2346788999999999987753
No 112
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.34 E-value=0.015 Score=29.66 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
+.+++..+|+.+ .++.++||.++|++.| ++++++-+++.+.+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~ 45 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPP 45 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcc
Confidence 347899999999 8889999999999985 34445666665543
No 113
>KOG3555|consensus
Probab=95.17 E-value=0.052 Score=36.27 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccc
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~ 129 (131)
+..+-.+|..+|.+.+|.++..||+.+-. .-.+.-+..+|...|...||.||
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS 300 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSIS 300 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccc
Confidence 45677788888888888888888776642 23455677788888887888776
No 114
>KOG3555|consensus
Probab=94.43 E-value=0.11 Score=34.80 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
+-+.++.=||..+|.+.++.++..|...+.... .+.-++..|...|.-++|.|+.+|+...+..-+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk--------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK--------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhccC--------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 446778889999999999999999977664433 346789999999999999999999999988766
No 115
>KOG4578|consensus
Probab=94.23 E-value=0.057 Score=35.88 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 37 LQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
+.-.|..+|.+.++.|.-.|...+-....... ....-.+.+|+..|.|++..|+.+|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45556778888888888666555433332221 23467788999999999999999999988864
No 116
>KOG0042|consensus
Probab=93.95 E-value=0.13 Score=36.85 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=54.5
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccc
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEED 68 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 68 (131)
..|..+|.++.|++........|+..+...+...++.+....+..-+|.+...+|.+++.......
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 457788888889999999999998888788888888888888877788899999888887775543
No 117
>KOG4578|consensus
Probab=93.81 E-value=0.066 Score=35.58 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=47.3
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
.|..+|++.++.|...|+.-+=+-+- -.......+.+++..|.+++.+|++.|+...+....
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 47889999999999998765544332 123355668889999999999999999998876553
No 118
>KOG1955|consensus
Probab=93.55 E-value=0.21 Score=35.25 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=43.3
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
|.-.-.|.+|.|+-.--+.++.+.. +.-.++..||+..|.+.+|.+++.||+..+....
T Consensus 237 FrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 237 FRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred hhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 4455667778888777777776544 4456788888888888888888888888876553
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=93.53 E-value=1.1 Score=32.70 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=60.0
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHh----hhC
Q psy3155 12 KTGFIDTLKISTILNTMGQ--LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFR----LYD 85 (131)
Q Consensus 12 ~~g~i~~~~l~~~l~~l~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~----~~D 85 (131)
+.|.++..+|..+.+.+-. .....++..+|..+..++ +.++.++|..++........ .+......++. ...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~--~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELD--CTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcC--CCHHHHHHHHHHHHhhcc
Confidence 4689999999888887643 236889999999996543 68999999999988765421 11222333322 211
Q ss_pred ---CCCCCcccHHHHHHHHHH
Q psy3155 86 ---REGNGYITTATLREILAA 103 (131)
Q Consensus 86 ---~~~~g~i~~~el~~~l~~ 103 (131)
..+.+.++.+.|..+|..
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccccCcCHHHHHHHHcC
Confidence 123345889999888863
No 120
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=93.40 E-value=0.63 Score=24.73 Aligned_cols=70 Identities=6% Similarity=0.046 Sum_probs=49.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhh
Q psy3155 14 GFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLY 84 (131)
Q Consensus 14 g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~ 84 (131)
..||..||....+..+++++++++..+...+-.+.-.-.+-.+-..++.......+ +.+...+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~-p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITS-PQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 57899999999999999999999999998876555555555665555555543322 25556667776654
No 121
>KOG4347|consensus
Probab=93.22 E-value=0.32 Score=35.36 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=48.9
Q ss_pred eeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCC
Q psy3155 52 VNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGS 125 (131)
Q Consensus 52 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~ 125 (131)
++|..|...+....+-. .+..-+..+|+.+|.+.+|.|+..+|..-|..+...-.-+.+.-+++.++++.+
T Consensus 535 i~~~~f~~~f~~l~pw~---~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWA---VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHhhHHHHhhccCchh---HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 34445555444443332 445567889999999999999999999888876544444556667777777655
No 122
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.03 E-value=0.82 Score=24.99 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCC
Q psy3155 13 TGFIDTLKISTILNTMG--QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNG 90 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 90 (131)
+|.++..|...+-..+. +.++..+...+...+........++.+|...+...... .....-+..+|...- -+|
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~l~~L~~vA~--ADG 87 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY---EERLELVEALWEVAY--ADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH--hcC
Confidence 68898888766554331 34667777777777655555667888888887765422 234455667777763 446
Q ss_pred cccHHHHHH
Q psy3155 91 YITTATLRE 99 (131)
Q Consensus 91 ~i~~~el~~ 99 (131)
.++..|-.-
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07313 88 ELDEYEEHL 96 (104)
T ss_pred CCCHHHHHH
Confidence 677766543
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.75 E-value=0.27 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhh
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATH 63 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 63 (131)
.++++++..+|..+..+..|.|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 368899999999999999999999999987663
No 124
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=91.75 E-value=0.75 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 90 GYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 90 g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
..||.+||..+.+.+|.++++.++..++..+-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 35889999999999999999999888887764
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.37 E-value=1.6 Score=25.58 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=35.9
Q ss_pred CceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhC-------CCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhc
Q psy3155 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD-------REGNGYITTATLREILAA-LDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 50 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~d 121 (131)
+.++-.||.++=..... ....++.+...|. -+..+.|+.+-|+.+|+. +...++++-+..+|.+|-
T Consensus 6 ~~lsp~eF~qLq~y~ey------s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY------STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 34666666665333311 1234444444442 133458999999999998 566799999999998885
Q ss_pred c
Q psy3155 122 T 122 (131)
Q Consensus 122 ~ 122 (131)
.
T Consensus 80 ~ 80 (138)
T PF14513_consen 80 K 80 (138)
T ss_dssp -
T ss_pred C
Confidence 4
No 126
>KOG0998|consensus
Probab=91.19 E-value=0.081 Score=39.92 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=48.5
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccccC
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~~ 131 (131)
.....+..+|...|.+++|.|+..+....+...| ++...+..+....+..+.|.++++
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ 337 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKD 337 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCccccc
Confidence 4456777799999999999999999999998855 778888888888888888888763
No 127
>KOG2243|consensus
Probab=91.07 E-value=0.57 Score=37.68 Aligned_cols=59 Identities=14% Similarity=0.357 Sum_probs=47.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHh
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIAT 62 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 62 (131)
+.|..+|+++.|.|+..+|..++.. ....+..++..+..-...+.+..++|.+|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3578899999999999999999875 3346777888887777777888899999997643
No 128
>KOG0042|consensus
Probab=90.98 E-value=0.52 Score=33.96 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccc
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~ 129 (131)
....+.-|..+|.++.|+++.+++.++|+..+...+++...+++...+.+.+|.+.
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~ 647 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVE 647 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceee
Confidence 34566789999999999999999999999999889999999999998887777654
No 129
>PRK00523 hypothetical protein; Provisional
Probab=90.14 E-value=1.6 Score=22.43 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+..|+.+ ..++-.|+.+-++.++..+|-..++..+.++.+.+.
T Consensus 27 rk~~~k~-l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 27 KKMFKKQ-IRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHH-HHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4445544 344567999999999999999999999999998873
No 130
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=89.58 E-value=1.6 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=29.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 88 GNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
++..|+.+.++.++..+|...++..+..+++.+.
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3557999999999999999999999999988764
No 131
>KOG2243|consensus
Probab=89.03 E-value=0.58 Score=37.66 Aligned_cols=51 Identities=18% Similarity=0.481 Sum_probs=41.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
..|+.+|+++.|.|+..+|..++... .+.+..|++-+++....+.+...+|
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y 4111 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDY 4111 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccH
Confidence 46888899999999999999998752 3567888888888888777776665
No 132
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=88.90 E-value=0.7 Score=26.72 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=41.9
Q ss_pred CCcccHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCC
Q psy3155 13 TGFIDTLKISTILNTM--GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNG 90 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 90 (131)
+|.++.+|...+...+ ....+......+...+........++.+++..+...... .....-+..++...-.| |
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~r~~ll~~l~~ia~AD--G 111 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP---EEREDLLRMLIAIAYAD--G 111 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H---HHHHHHHHHHHHHCTCT--T
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch---HHHHHHHHHHHHHHhcC--C
Confidence 6888888877666655 223344455555555543333356677777665554332 24455667777777665 4
Q ss_pred cccHH
Q psy3155 91 YITTA 95 (131)
Q Consensus 91 ~i~~~ 95 (131)
.++..
T Consensus 112 ~~~~~ 116 (140)
T PF05099_consen 112 EISPE 116 (140)
T ss_dssp C-SCC
T ss_pred CCCHH
Confidence 45443
No 133
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=88.42 E-value=2.1 Score=22.77 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
++++.+++..+... -...-.|.+.+|...+....... .......+=..+|...+++||.=||--+.+-++
T Consensus 3 rITK~eA~~FW~~~-Fg~r~IVPW~~F~~~L~~~h~~~----~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 3 RITKAEAAEFWKTS-FGKRTIVPWSEFRQALQKVHPIS----SGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp --SSHHHHHHHHHH-HTT-SEEEHHHHHHHHHHHS--S----SHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eeccHHHHHHHHHH-CCCCeEeeHHHHHHHHHHhcCCC----chHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 45666666666653 25566788999998888876653 223334444567888888998888876666544
No 134
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.99 E-value=2.5 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHh
Q psy3155 87 EGNGYITTATLREILAALD----DKLNPEDLDGIIQE 119 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~~----~~~~~~e~~~l~~~ 119 (131)
+.+|...++.|..++.... ..++-.|+..|++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 3556666677777777643 24666666666654
No 135
>KOG3449|consensus
Probab=87.79 E-value=3.3 Score=23.13 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=35.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.+|-.++..++-..+..+++.+|.++|..+..+.++.+++.+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 4566666677777889999999999999999999999988874
No 136
>PRK01844 hypothetical protein; Provisional
Probab=87.43 E-value=2.6 Score=21.62 Aligned_cols=43 Identities=12% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+..|+.+ ..++-.|+.+-++..+..+|-..++..+.++.+.+.
T Consensus 26 rk~~~k~-lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 26 RKYMMNY-LQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHH-HHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4445544 344567999999999999999999999999998873
No 137
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=87.39 E-value=2.2 Score=21.37 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=29.1
Q ss_pred hhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhc
Q psy3155 82 RLYDREGNGYITTATLREILAA----------LDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~----------~~~~~~~~e~~~l~~~~d 121 (131)
+.||+..+.+|+.+++.++.+. -|..++..-+.+++-.-.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e 59 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEE 59 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHH
Confidence 4678888999999999998886 255667666666655443
No 138
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=87.35 E-value=2.5 Score=23.20 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy3155 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104 (131)
Q Consensus 34 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 104 (131)
-..++.-|..+.. +|.+.-..|-..+...-+. ....++-.+...--.-....|+.+||+.++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSk----eFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSK----EFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-H----HHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCcccH----HHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4455555655544 6677777777666544111 112222222222222225567777777776654
No 139
>KOG3866|consensus
Probab=87.24 E-value=0.85 Score=30.40 Aligned_cols=63 Identities=13% Similarity=0.283 Sum_probs=44.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHH-c--CCCCC--HHHH-----------HHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNT-M--GQLFD--DTEL-----------QALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~-l--~~~~~--~~~~-----------~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
-.|...|.+++|.++-.++..++.. + -+.++ +..+ ..+++.+|.+.+.-|+.++|++.-....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 3578889999999999999877643 2 12222 1111 3466777999999999999998755443
No 140
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=86.78 E-value=2.2 Score=25.48 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHhhcC---CCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC--CCCHHH
Q psy3155 38 QALIDEND---PDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDD--KLNPED 112 (131)
Q Consensus 38 ~~~~~~~d---~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~e 112 (131)
+.+|..|. ......++-..|..++...-..... .+...+.-+|..+-..+...|+.++|..+|..+.. ......
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k-~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK-LTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS-S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC-CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 44555555 2344567788888888877433222 56677788888876666667998888888887542 122225
Q ss_pred HHHHHHhh
Q psy3155 113 LDGIIQEI 120 (131)
Q Consensus 113 ~~~l~~~~ 120 (131)
+.++...+
T Consensus 81 ~~~~~~kl 88 (154)
T PF05517_consen 81 AEELKEKL 88 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 141
>KOG2871|consensus
Probab=86.64 E-value=1.3 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.507 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHH
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLD 114 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~ 114 (131)
.++++++|+.+|+.+.|+|+-.-++.++...+..+++...-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v 348 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYV 348 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHH
Confidence 57899999999999999999999999999888555554433
No 142
>KOG1265|consensus
Probab=86.62 E-value=11 Score=29.39 Aligned_cols=82 Identities=11% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhccccc------HHHhHHHHHHHHhhhCCC----C
Q psy3155 19 LKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDD------AEAMQEELKEAFRLYDRE----G 88 (131)
Q Consensus 19 ~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~------~~~~~~~~~~~f~~~D~~----~ 88 (131)
+-|..++..+. ...++..+|..+..+....++..++..++....+..- ++.....+..+...|-++ .
T Consensus 208 e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 208 EKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 33444555443 3467999999998877789999999999887654321 122346677788887655 4
Q ss_pred CCcccHHHHHHHHHH
Q psy3155 89 NGYITTATLREILAA 103 (131)
Q Consensus 89 ~g~i~~~el~~~l~~ 103 (131)
+|.|+.+-|.+++..
T Consensus 285 ~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccchhhhHHHhhC
Confidence 789999999998875
No 143
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.57 E-value=4.8 Score=23.71 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=60.5
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTM--GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF 81 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f 81 (131)
+|+.... +|.++..|...+..-+ .+.++.+++..+......-+...+++..|...+...+... ...+-+..+|
T Consensus 35 lf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e---~R~eli~~mw 109 (148)
T COG4103 35 LFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEE---QRLELIGLMW 109 (148)
T ss_pred HHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHH
Confidence 3555555 4677777655444322 3457778887777766555566788899998888666542 4556677788
Q ss_pred hhhCCCCCCcccHHHHHHHHH---HcCC
Q psy3155 82 RLYDREGNGYITTATLREILA---ALDD 106 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~---~~~~ 106 (131)
+.. ..+|.++.-|-.-+++ .+|.
T Consensus 110 eIa--~ADg~l~e~Ed~vi~RvAeLLgV 135 (148)
T COG4103 110 EIA--YADGELDESEDHVIWRVAELLGV 135 (148)
T ss_pred HHH--HccccccHHHHHHHHHHHHHhCC
Confidence 877 4456677665544444 3663
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.26 E-value=3.7 Score=22.17 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=35.3
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHH-------cC----CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNT-------MG----QLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~-------l~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
+-+|+.+ .+++|.++...|..+|+. +| +...+..++..|... .....|+..+|+..+...
T Consensus 6 RylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 6 RYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 3467766 778999999999888863 22 112566677777664 245568888888887765
No 145
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=86.13 E-value=2.2 Score=23.70 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=30.5
Q ss_pred cCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---CC-CCCHHHHHHHHHh
Q psy3155 44 NDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL---DD-KLNPEDLDGIIQE 119 (131)
Q Consensus 44 ~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~---~~-~~~~~e~~~l~~~ 119 (131)
||...+..|+.++...++..-. -|++.|.....-||..-|.+++... |. -++..-+..+++.
T Consensus 12 YDT~tS~YITLedi~~lV~~g~--------------~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~ 77 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREGR--------------EFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRF 77 (107)
T ss_pred cCCCccceeeHHHHHHHHHCCC--------------eEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3444455555555554444331 2344444434445555555555442 22 2455555555555
Q ss_pred hc
Q psy3155 120 ID 121 (131)
Q Consensus 120 ~d 121 (131)
++
T Consensus 78 yg 79 (107)
T TIGR01848 78 YG 79 (107)
T ss_pred hC
Confidence 44
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=85.31 E-value=4.1 Score=21.74 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhh
Q psy3155 14 GFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATH 63 (131)
Q Consensus 14 g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 63 (131)
..++..+|...|+.........+...+-..+|...++.|+.=||--..+-
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 45666666666666543333344445555556666666666665544443
No 147
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=84.99 E-value=3.6 Score=20.91 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHH
Q psy3155 16 IDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59 (131)
Q Consensus 16 i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 59 (131)
++.+++..++...|+.++++++..+++.-+..+--.++-..+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~ 57 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRN 57 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHH
Confidence 55667888888888889999998888875544433344333333
No 148
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=84.73 E-value=3 Score=20.95 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy3155 13 TGFIDTLKISTILNTMGQLFDDTELQALIDEN 44 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 44 (131)
+--|+.+.++..+..+|..+++..++.+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55789999999999999999999999888764
No 149
>KOG1955|consensus
Probab=84.55 E-value=3.2 Score=29.75 Aligned_cols=53 Identities=23% Similarity=0.381 Sum_probs=27.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCccc
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~ 129 (131)
+.....|+.+..+-.|+|+..--+.++..-. ++-.|+..|.+..|.+.||.++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALt 283 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALT 283 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCcccccc
Confidence 3344455555555555555555555554332 4444555555555555555544
No 150
>KOG2871|consensus
Probab=84.45 E-value=1.1 Score=30.59 Aligned_cols=60 Identities=18% Similarity=0.470 Sum_probs=44.3
Q ss_pred ChHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHh-hcCCCCCCceeHhhHHHH
Q psy3155 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALID-ENDPDATGKVNFDGFCRI 60 (131)
Q Consensus 1 l~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~-~~d~~~~~~i~~~ef~~~ 60 (131)
++++|+.+|+.++|+|+..-+...+..++...++.+.-.+++ .++...-|-|-..+|...
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 367899999999999999999999999886666555444444 466666666666665544
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=84.43 E-value=2.3 Score=21.74 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cC
Q psy3155 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA-LD 105 (131)
Q Consensus 49 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~ 105 (131)
...++|......+.....+ .....+...|..+ +.+.|+.++|.+.++. .|
T Consensus 6 sp~~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPP----SKMDLLQKHYEEF---KKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHHCCH----HHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHH
Confidence 3456777777776666554 3334444444444 5677999999888887 45
No 152
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.41 E-value=4 Score=20.84 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=33.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
..+... ..++-.|+.+-++.++..+|-+.|+..++++++.+-
T Consensus 27 k~~~k~-lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 27 KQMKKQ-LKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHH-HhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 334433 234557999999999999999999999999998764
No 153
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.39 E-value=5.5 Score=22.48 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=33.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 80 AFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+|-.....++..+|.+++..+|...|..+.+..+..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 444444566667999999999999999999998888888774
No 154
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.37 E-value=3 Score=22.52 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
++.+.+|+.+ .+.+|.++...|..+|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 5678889988 788899999988888876
No 155
>KOG3866|consensus
Probab=83.66 E-value=8.4 Score=25.97 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc----cccHHHh-----HH--HH-HHHHhh
Q psy3155 17 DTLKISTILNTM-GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLE----EDDAEAM-----QE--EL-KEAFRL 83 (131)
Q Consensus 17 ~~~~l~~~l~~l-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~----~~~~~~~-----~~--~~-~~~f~~ 83 (131)
+..++..+.... |+.++.-.-+..|...|.+++|.++-.+...++...+- +.+.... .+ .+ ..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 455666666554 44444444456666667888998888777766554322 2111111 11 12 236777
Q ss_pred hCCCCCCcccHHHHHHHHH
Q psy3155 84 YDREGNGYITTATLREILA 102 (131)
Q Consensus 84 ~D~~~~g~i~~~el~~~l~ 102 (131)
.|.|.+..||.++|...-.
T Consensus 305 vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cccchhhhhhHHHHHhhhh
Confidence 8999999999998865543
No 156
>KOG0998|consensus
Probab=82.77 E-value=0.4 Score=36.42 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=49.6
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcc
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLE 66 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 66 (131)
.++|...|.+.+|.|+..+....+...| ++...+..+|...+..+.+.+++.+|.-.+.....
T Consensus 286 ~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 286 SKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 3568888999999999998888877644 56677888888888888999999988877655433
No 157
>PLN02228 Phosphoinositide phospholipase C
Probab=82.08 E-value=9.8 Score=27.95 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCC----CCCcccHHHHHHHHHH
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE----GNGYITTATLREILAA 103 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~~ 103 (131)
..++.++..+|..+.. ++.++.++|..++........ ...+....++..+... ..|.++.+.|..+|.+
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERH--AGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCcc--CCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 3467889999988854 357999999988877654321 2334566677766432 3467999999988865
No 158
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.01 E-value=3.5 Score=24.17 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCC-------CCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhC
Q psy3155 13 TGFIDTLKISTILNTMGQLFDDTELQALIDENDP-------DATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D 85 (131)
=+.|+..+|.++=+-+.+ +...++.+++.|.. +..+.|+|+.|..+|...+... .+.+-.+.+|..|-
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d---~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD---LPEDLCQHLFLSFQ 79 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S-----HHHHHHHHHHS-
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC---CCHHHHHHHHHHHh
Confidence 357788887765443322 33456666666632 2355899999999988877654 34455566777774
Q ss_pred C
Q psy3155 86 R 86 (131)
Q Consensus 86 ~ 86 (131)
.
T Consensus 80 ~ 80 (138)
T PF14513_consen 80 K 80 (138)
T ss_dssp -
T ss_pred C
Confidence 3
No 159
>KOG0035|consensus
Probab=81.34 E-value=4.4 Score=31.12 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=45.8
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHH-----HHHHHHHhhccCCCCcccc
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPE-----DLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~-----e~~~l~~~~d~~~~g~i~~ 130 (131)
.....++..|+-++....|.++.+++.+++..+|...-++ ++..++...+++.-|.+++
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~ 807 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQL 807 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeH
Confidence 4557899999999999999999999999999999877642 3444555556655576664
No 160
>PRK00523 hypothetical protein; Provisional
Probab=80.79 E-value=5 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy3155 13 TGFIDTLKISTILNTMGQLFDDTELQALIDEN 44 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 44 (131)
+--|+.+.++..+.++|..+++..++.+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55789999999999999999999999988765
No 161
>KOG1707|consensus
Probab=80.49 E-value=9.2 Score=28.12 Aligned_cols=50 Identities=20% Similarity=0.497 Sum_probs=41.3
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhc
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAA-LDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~d 121 (131)
.....+..+|+..|.+++|.++-.|+..+-+. ++.++...++..+.....
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~ 242 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQ 242 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999888777 788999888877665554
No 162
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=79.37 E-value=6.3 Score=19.80 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCC
Q psy3155 88 GNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDG 124 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~ 124 (131)
.++.++..++...+...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888899999988899999999988888887543
No 163
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=78.12 E-value=5.7 Score=24.57 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=24.4
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 85 DREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 85 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
..+.+|+++.++|.+.+..-+..++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4678899999999999888777789999999987643
No 164
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.00 E-value=6.6 Score=22.19 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
-+.+|++.++...+..++++++++++.-.++
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~K 110 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVDK 110 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999998876553
No 165
>KOG0039|consensus
Probab=77.77 E-value=6.8 Score=29.23 Aligned_cols=68 Identities=25% Similarity=0.531 Sum_probs=45.6
Q ss_pred eeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---C-----CCCCHHHHHHHHHhhccC
Q psy3155 52 VNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL---D-----DKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 52 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~---~-----~~~~~~e~~~l~~~~d~~ 123 (131)
+++++|. .... +...+++..|..+|. .+|.++.+++..++... + ...+.+....++...+.+
T Consensus 4 ~~~~~~~------~~~~---~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 4 ISFQELK------ITDC---SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred cchhhhc------ccCC---ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 7777777 1111 445778888888887 88889998888887762 1 233444455677777777
Q ss_pred CCCccc
Q psy3155 124 GSGTVD 129 (131)
Q Consensus 124 ~~g~i~ 129 (131)
..|.+.
T Consensus 74 ~~~y~~ 79 (646)
T KOG0039|consen 74 HKGYIT 79 (646)
T ss_pred ccceee
Confidence 776554
No 166
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=76.11 E-value=12 Score=21.09 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=33.0
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 80 AFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+|-.....++..+|.+++..+|+..|..+....+..+++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444566668999999999999999988888888777663
No 167
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=75.84 E-value=13 Score=21.48 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCHHHHHHHHhhcCCCC--CCceeHhhHHHHHhhhccc------c-c--H-----HHhHHHHHHHHhhhCCCCCCcccHH
Q psy3155 32 FDDTELQALIDENDPDA--TGKVNFDGFCRIATHFLEE------D-D--A-----EAMQEELKEAFRLYDREGNGYITTA 95 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~--~~~i~~~ef~~~~~~~~~~------~-~--~-----~~~~~~~~~~f~~~D~~~~g~i~~~ 95 (131)
++-..+..+|.....++ +..++..+....+...... . . + ....--+..++..||++++|.|+.-
T Consensus 38 v~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vl 117 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVL 117 (127)
T ss_dssp --HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHH
T ss_pred eeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehh
Confidence 34455566666654332 4669998888887766521 0 0 0 1222346788999999999999999
Q ss_pred HHHHHHHHc
Q psy3155 96 TLREILAAL 104 (131)
Q Consensus 96 el~~~l~~~ 104 (131)
.++-.+..+
T Consensus 118 s~KvaL~~L 126 (127)
T PF09068_consen 118 SFKVALITL 126 (127)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998877643
No 168
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=75.21 E-value=21 Score=23.54 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=56.4
Q ss_pred CCcccHHHHHHHHHHc--CCCCCHHH---HHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCC
Q psy3155 13 TGFIDTLKISTILNTM--GQLFDDTE---LQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l--~~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 87 (131)
+|.++..|+. ..+.+ .+.++.++ +..+|.. ......++.+|+..+......+ ......-+..+|.+.=
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~---~k~~~~~l~~~~~~~~~~~~~r-~~l~~~lL~~l~~vA~-- 141 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE---GKEPDFPLREKLRQFRSVCGGR-FDLLRMFLEIQIQAAF-- 141 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH--
Confidence 7888888876 33332 13345555 4555554 2334478899998887765432 1111122355566552
Q ss_pred CCCcccHHHHH---HHHHHcCCCCCHHHHHHHHHhh
Q psy3155 88 GNGYITTATLR---EILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 88 ~~g~i~~~el~---~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
.||.++..|-. ++...+| +++.++..+...+
T Consensus 142 ADG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~~ 175 (267)
T PRK09430 142 ADGSLHPNERQVLYVIAEELG--FSRFQFDQLLRMM 175 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 45778877643 3333355 7788887776653
No 169
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=74.44 E-value=23 Score=24.69 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHH----HHHHHHhhcCCCCCCceeHhhHH---HHHhhhcccccH
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTMGQLF-------DDT----ELQALIDENDPDATGKVNFDGFC---RIATHFLEEDDA 70 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l~~~~-------~~~----~~~~~~~~~d~~~~~~i~~~ef~---~~~~~~~~~~~~ 70 (131)
|..+|.+.+..++.++-..++..+|++. +.. ++..+...++..+...|-+++-. ..++...+.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~--- 239 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSY--- 239 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCc---
Confidence 5555666688999999999999988764 333 34555566665544444443321 112222111
Q ss_pred HHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHH
Q psy3155 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED 112 (131)
Q Consensus 71 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e 112 (131)
.....++.+|+.+=--+.+++...=++..+...-...++++
T Consensus 240 -~n~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 240 -ANINDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred -cChHHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 33455555666553334444444444444444333344443
No 170
>KOG3077|consensus
Probab=74.22 E-value=22 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=45.2
Q ss_pred hhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 7 MFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 7 ~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
..|+..+..|-.+.+..++..+|+.+..-.+.-+...+....-+..+-++|+..+...
T Consensus 73 y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 73 YKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred hcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 3466555789999999999999988876666666666777778889999999876654
No 171
>PLN02222 phosphoinositide phospholipase C 2
Probab=73.84 E-value=14 Score=27.28 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=43.5
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHhhcCC-CCCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQ--LFDDTELQALIDENDP-DATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~~ 64 (131)
..+|..+.. ++.++.++|..+|..... ..+.+.++.++..+.. ...+.++++.|...+...
T Consensus 28 ~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 28 KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 456777653 479999999999987643 3467778888877532 235568999999887653
No 172
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=73.03 E-value=7.8 Score=19.26 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=17.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGI 116 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l 116 (131)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 36777777777777777777776553
No 173
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=72.98 E-value=4.9 Score=15.31 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=9.6
Q ss_pred CCCCCCcccHHHHHH
Q psy3155 85 DREGNGYITTATLRE 99 (131)
Q Consensus 85 D~~~~g~i~~~el~~ 99 (131)
|.+++|.|+.-++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 457788887766643
No 174
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=72.94 E-value=12 Score=23.05 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 86 REGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.+.+|++..++|...++.-+..++.+.+.+++..=|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 578889999999888876566688888888887543
No 175
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=71.56 E-value=13 Score=19.99 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
|+.+++.++-+.....++++++..+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4677788888777888888887655443
No 176
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.29 E-value=21 Score=26.50 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=41.5
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHhhcCC-------CCCCceeHhhHHHHHhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQ---LFDDTELQALIDENDP-------DATGKVNFDGFCRIATH 63 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~---~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~~~~ 63 (131)
+.+|..+..+ .+.++.++|..+|..-.. ..+.+.+..++..+-. -+.+.++.+.|...+..
T Consensus 32 ~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 32 RDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5678888544 379999999999987642 2356666666654311 12346999999987654
No 177
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=70.99 E-value=11 Score=18.61 Aligned_cols=31 Identities=3% Similarity=0.257 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy3155 14 GFIDTLKISTILNTMGQLFDDTELQALIDEN 44 (131)
Q Consensus 14 g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 44 (131)
-.+|.+|+...+..++-.++..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4678888888888888778888877777654
No 178
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=70.95 E-value=12 Score=21.14 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
-+.+|++.++-.....++++++++++..+.
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l~ 108 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIVK 108 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 357788888888888888888888877654
No 179
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=70.33 E-value=14 Score=21.75 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
.|+++++.+...+...+|++|+..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4677777776666667777777777777764
No 180
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=70.11 E-value=8.1 Score=20.30 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=21.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 76 ELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 76 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.++.+...- ...|+||.+++..+|.... ++.+.+..++..+.
T Consensus 8 ~i~~Li~~g--K~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 8 AIKKLIEKG--KKKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 344444433 3456777777777766333 66666776666553
No 181
>KOG4004|consensus
Probab=70.04 E-value=2.3 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREIL 101 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l 101 (131)
...-+...|...|.+++|+|+.+|+-..+
T Consensus 220 me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 220 MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 34567789999999999999999887665
No 182
>PLN02222 phosphoinositide phospholipase C 2
Probab=69.72 E-value=23 Score=26.21 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=46.7
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCC-CCCCcccHHHHHHHHHH
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDR-EGNGYITTATLREILAA 103 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~ 103 (131)
..+.++..+|..+.. ++.++.++|..++........ ...+....++..+.. .+.+.++.+.|..+|.+
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDK--ATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCcc--CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 456699999999854 468999999998887765321 223445555555422 24567999999999875
No 183
>KOG0506|consensus
Probab=69.68 E-value=40 Score=24.46 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=39.8
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhh---cCC-----CCCCceeHhhHHHHHh
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDE---NDP-----DATGKVNFDGFCRIAT 62 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~---~d~-----~~~~~i~~~ef~~~~~ 62 (131)
+|..+....++.++.--|..+|++.|+.-++.-+..++.. ++. .....++-+.|...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4666655557999999999999999998765555444443 231 2234677777876643
No 184
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=69.40 E-value=18 Score=20.22 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
+|.+++..+|...|..+.+.-+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999999888888775
No 185
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=69.07 E-value=7.3 Score=21.30 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCcccHHHHHHHHHHcC--C---CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCC
Q psy3155 13 TGFIDTLKISTILNTMG--Q---LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~--~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 87 (131)
+|.++..|...+.+.+. . ......+..++......- ...+..++...+.....+ .....-+..++.....|
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ia~aD 91 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPP---ELRETAFAVAVDIAAAD 91 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHcc
Confidence 68888888877776653 1 233455555555432210 123455666665555432 23444556666666444
Q ss_pred CCCcccHHHH
Q psy3155 88 GNGYITTATL 97 (131)
Q Consensus 88 ~~g~i~~~el 97 (131)
|.++..|-
T Consensus 92 --G~~~~~E~ 99 (111)
T cd07176 92 --GEVDPEER 99 (111)
T ss_pred --CCCCHHHH
Confidence 56666543
No 186
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=69.05 E-value=19 Score=20.43 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=31.6
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 81 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
|-..-..++..+|.+++..+|...|..+...-+..+++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 33333455667999999999999999888888887777664
No 187
>PLN02228 Phosphoinositide phospholipase C
Probab=68.61 E-value=27 Score=25.80 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=43.7
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHhhcCCC----CCCceeHhhHHHHHhhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQ--LFDDTELQALIDENDPD----ATGKVNFDGFCRIATHF 64 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~~ 64 (131)
..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+... ..+.++.+.|...+...
T Consensus 27 ~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 27 KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456766643 368999999999987632 24567788888887532 34579999999887643
No 188
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=68.01 E-value=12 Score=20.11 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=35.5
Q ss_pred ceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy3155 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~ 117 (131)
.+++.++...=..- .. .....=..+-+.+- =|+.+..+|...|..+| ++.+++.+.+
T Consensus 30 ~it~~dL~~~GL~g--~~---~s~~rR~~l~~~L~---iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELGLIG--GP---DSKERREKLGEYLG---IGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCCCCC--Cc---cHHHHHHHHHHHHC---CCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 48888876552211 11 12222233444443 37888899999999888 8888888765
No 189
>PLN02230 phosphoinositide phospholipase C 4
Probab=67.43 E-value=24 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.389 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-C--CCCHHHHHHHHHhh
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALD-D--KLNPEDLDGIIQEI 120 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~--~~~~~e~~~l~~~~ 120 (131)
...++.+|..+..++ +.++.++|.++|.... . ..+.+++..++..+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 467777888774333 6788888888887743 2 23556666666543
No 190
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=67.33 E-value=18 Score=19.48 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
.|+.++++++-+.....+++++...+...
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 37888888888888888888887655443
No 191
>PRK10945 gene expression modulator; Provisional
Probab=67.25 E-value=16 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q psy3155 96 TLREILAALDDKLNPEDLDGIIQ 118 (131)
Q Consensus 96 el~~~l~~~~~~~~~~e~~~l~~ 118 (131)
.|.+++....+.++..|+..+..
T Consensus 23 TLEkvie~~~~~L~~~E~~~f~~ 45 (72)
T PRK10945 23 TLERVIEKNKYELSDDELAVFYS 45 (72)
T ss_pred HHHHHHHHhhccCCHHHHHHHHH
Confidence 34444444444444444444333
No 192
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=66.62 E-value=24 Score=20.67 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=36.9
Q ss_pred CCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy3155 48 ATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104 (131)
Q Consensus 48 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 104 (131)
.....+.++|+.-+........+......+..+|..+. ..|+..++.++...+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~----r~Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK----RHISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHC
Confidence 45678889998887776554444345566668888884 348888888887754
No 193
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=63.40 E-value=22 Score=19.13 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHcCCC-CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCccc
Q psy3155 15 FIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93 (131)
Q Consensus 15 ~i~~~~l~~~l~~l~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 93 (131)
.++..++..++..+... .....+..+-... ... ..++-.+...++..+.... .....++.++... ++
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~-~~~-~~~T~~Qv~~il~~f~fd~---~kl~~lk~l~p~i-------~D 71 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAA-KTN-NCFTCAQVKQILSLFSFDN---DKLKALKLLYPYI-------VD 71 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHH-hcC-CceeHHHHHHHHHHcCCCH---HHHHHHHHHhhhc-------cC
Confidence 34555566666555332 3333333333332 211 1588888888877776553 3344445554433 33
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q psy3155 94 TATLREILAALDDKLNPEDLDGI 116 (131)
Q Consensus 94 ~~el~~~l~~~~~~~~~~e~~~l 116 (131)
++....+...+....+.+++.++
T Consensus 72 ~~n~~~i~~~f~f~s~k~~~~~~ 94 (95)
T PF14771_consen 72 PQNYYTIIDAFSFSSDKDKAREI 94 (95)
T ss_pred HHHHHHHHHHhcCcccHHHHHHh
Confidence 44455666666666666666554
No 194
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=63.07 E-value=16 Score=17.34 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=25.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCC
Q psy3155 88 GNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDG 124 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~ 124 (131)
..|.|+..+++..+. ++...+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 368899999999984 78888889999888643
No 195
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=62.18 E-value=21 Score=22.10 Aligned_cols=37 Identities=11% Similarity=0.314 Sum_probs=24.0
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcC
Q psy3155 9 DTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEND 45 (131)
Q Consensus 9 d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d 45 (131)
..+.+|+++.+++...+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4567899999999999888777788999999887643
No 196
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=61.90 E-value=31 Score=20.44 Aligned_cols=60 Identities=10% Similarity=0.241 Sum_probs=38.9
Q ss_pred ceeHhhHHHHHhhhcc------cc-c-HHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy3155 51 KVNFDGFCRIATHFLE------ED-D-AEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~------~~-~-~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~ 117 (131)
.|++.+|...+..... .. . ..........+|..+ |...=+..-+..+|..++++|+..++
T Consensus 48 ~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 48 KISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHH
Confidence 6999999887766541 11 0 111123344566655 55555667777789999999999988
No 197
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=61.38 E-value=43 Score=23.04 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=27.5
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHhhcCCC
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTMGQLFD----------DTELQALIDENDPD 47 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l~~~~~----------~~~~~~~~~~~d~~ 47 (131)
|..++.+..+.++..+...+|..+|++.. .+++..++......
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 44444444567889999999998876432 24566666655433
No 198
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=61.16 E-value=18 Score=18.03 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=13.0
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy3155 79 EAFRLYDREGNGYITTATLREILAALD 105 (131)
Q Consensus 79 ~~f~~~D~~~~g~i~~~el~~~l~~~~ 105 (131)
.+++.++.+...=++.++...-...+|
T Consensus 8 ~v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 8 EVLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 344444433333355555555555554
No 199
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=60.70 E-value=25 Score=19.01 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHHHcC-CCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCc
Q psy3155 13 TGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGY 91 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 91 (131)
+|.++..|...+-+.+. ...+......+...+........++.+|...+...... .+.....-+..+|...-. +|.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGG-RPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH--cCC
Confidence 78888888655444321 22333333333333322222236678887777665321 111334556667776633 567
Q ss_pred ccHHHHH
Q psy3155 92 ITTATLR 98 (131)
Q Consensus 92 i~~~el~ 98 (131)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 7776644
No 200
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=59.99 E-value=35 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.9
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy3155 9 DTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEN 44 (131)
Q Consensus 9 d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 44 (131)
..+.+|.++.+++...++.-+...+.+.+..+...-
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 356789999999999887656668899998888763
No 201
>KOG0113|consensus
Probab=59.95 E-value=23 Score=23.83 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhccC
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAA-LDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~d~~ 123 (131)
..+..-...+|++++-.+.-+-+++++-. +.+..++..+...|..+.+-
T Consensus 79 ~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~I 128 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPI 128 (335)
T ss_pred HHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcc
Confidence 34777888999999988888888888765 78899999999999888653
No 202
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=59.12 E-value=15 Score=16.01 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=13.4
Q ss_pred ccHHHHHHHHHHcCCCCC
Q psy3155 92 ITTATLREILAALDDKLN 109 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~ 109 (131)
-+.++|+..|...|...+
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 466788899988876543
No 203
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=58.96 E-value=19 Score=17.30 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy3155 89 NGYITTATLREILAALDDKLNPEDLDGIIQ 118 (131)
Q Consensus 89 ~g~i~~~el~~~l~~~~~~~~~~e~~~l~~ 118 (131)
.|.|+.+||..-+.......+..++..++.
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 566777777666666555555556555554
No 204
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=58.85 E-value=23 Score=18.11 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHhh
Q psy3155 94 TATLREILAALDDKLNP-EDLDGIIQEI 120 (131)
Q Consensus 94 ~~el~~~l~~~~~~~~~-~e~~~l~~~~ 120 (131)
.+.|.+++..+.+.++. .|+..+.+..
T Consensus 16 ~eTLEkv~e~~~y~L~~~~e~~~f~~Aa 43 (71)
T PRK10391 16 LESLEKLFDHLNYTLTDDQEIINMYRAA 43 (71)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 34455555555555554 5555544443
No 205
>KOG2301|consensus
Probab=58.71 E-value=33 Score=28.79 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=44.5
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLF----DDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
.++|+.+|++..|+|....+..+++.+.-++ .... +.+.-......++.|++.+-+.++....
T Consensus 1420 ~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1420 YEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred HHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 4678999999999999999999999874332 1111 3333334455678899999887766553
No 206
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=58.66 E-value=29 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
.|+.+++.++-+.....+++++...+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 47788888888887888888887655443
No 207
>KOG4286|consensus
Probab=58.00 E-value=25 Score=26.93 Aligned_cols=95 Identities=11% Similarity=0.223 Sum_probs=59.7
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhccccc---------HHHhH
Q psy3155 4 AFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDD---------AEAMQ 74 (131)
Q Consensus 4 ~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~---------~~~~~ 74 (131)
+++.||+..+|.|..-.|+..+-.+...+.++..+.+|..+...+.. +.-..|-.++....+... .....
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgsNve 553 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIE 553 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC
Confidence 35778999999999999998888877667788888999987554443 334455444443322100 01223
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREIL 101 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l 101 (131)
..++..|... ++...|+...|...+
T Consensus 554 psvrsCF~~v--~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 554 PSVRSCFQFV--NNKPEIEAALFLDWM 578 (966)
T ss_pred hHHHHHHHhc--CCCCcchHHHHHHHh
Confidence 4677888833 444456655555544
No 208
>PLN02223 phosphoinositide phospholipase C
Probab=57.14 E-value=42 Score=24.68 Aligned_cols=61 Identities=5% Similarity=-0.137 Sum_probs=40.8
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHc----C-CCCCHHHHHHHHhhcCCC--------CCCceeHhhHHHHHhh
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTM----G-QLFDDTELQALIDENDPD--------ATGKVNFDGFCRIATH 63 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l----~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~~~~ 63 (131)
+.+|..+- .++|.++.+.+..+|..| | ...+.++++.++..+-.. ..+.++.+.|...+..
T Consensus 19 ~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 19 LNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 46777773 567899999999888433 1 245666666666654221 1256899999988765
No 209
>KOG4403|consensus
Probab=57.11 E-value=13 Score=26.23 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 34 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
-+.++.+-+.+|-+.+|.|+.+|--.++..-..-++. ...-.+.|.. .+..|+.++|...+..
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~---~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDS---TRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccc---hhhhhhhccC----CccceeHHHHHHHHHh
Confidence 3445555556666666666666655555555544311 1121223332 2344666666555554
No 210
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=56.94 E-value=35 Score=19.36 Aligned_cols=47 Identities=6% Similarity=0.035 Sum_probs=35.4
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHH
Q psy3155 8 FDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 59 (131)
+-.-++..++.+++..+|...|..+...++..+++.+.. .+..+.+.
T Consensus 12 ~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 12 CVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344456679999999999999999999998888887732 34555554
No 211
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=56.91 E-value=11 Score=23.44 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHH
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLD 114 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~ 114 (131)
..+.++++|.-||+++=-..+.+++.++|...|+--....+.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~ 94 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIK 94 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHH
Confidence 347899999999999988899999999999877544444433
No 212
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=56.64 E-value=21 Score=18.78 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHh
Q psy3155 20 KISTILNTMGQLFDDTELQALID 42 (131)
Q Consensus 20 ~l~~~l~~l~~~~~~~~~~~~~~ 42 (131)
|+..+|+.+|-.+++++...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 56778899999999888765543
No 213
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=56.21 E-value=27 Score=17.84 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=28.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhh
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAAL----DDKLNPEDLDGIIQEI 120 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~e~~~l~~~~ 120 (131)
..+..+...++....--+-..+++.++..+ |...+++-++.+|+.|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 455666666654444445666788777774 6677777788888765
No 214
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=54.74 E-value=41 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=33.2
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 83 LYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 83 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
..--+++|.+....|..-+..+...++..|+.++-+.+.
T Consensus 159 i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 159 IIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred EEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 334588999999999999999999999999998866553
No 215
>KOG4070|consensus
Probab=54.16 E-value=36 Score=20.46 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHh
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAALDD-----KLNPEDLDGIIQE 119 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~-----~~~~~e~~~l~~~ 119 (131)
.-.+|..+-..+-+.|+.++++.+|..+.. ...++++++|.+.
T Consensus 59 t~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~l 106 (180)
T KOG4070|consen 59 TDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQL 106 (180)
T ss_pred cceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 344555554555566777777777766541 3344445544443
No 216
>PLN02223 phosphoinositide phospholipase C
Probab=53.96 E-value=63 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHHhh
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREIL---AAL-D-DKLNPEDLDGIIQEI 120 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l---~~~-~-~~~~~~e~~~l~~~~ 120 (131)
..++.+|..+ ..+.|.++.+.|.+++ ... | ...+.++++.++..+
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~ 65 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAEL 65 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 5678888888 4677888888888888 442 3 346666666666654
No 217
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=53.86 E-value=22 Score=16.23 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred HHHHHHHhhhCC--CCCCcccHHHHHHHHHH
Q psy3155 75 EELKEAFRLYDR--EGNGYITTATLREILAA 103 (131)
Q Consensus 75 ~~~~~~f~~~D~--~~~g~i~~~el~~~l~~ 103 (131)
..+..+|..|.. ....+++..||+..+..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456677887742 34567999999998875
No 218
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=53.65 E-value=13 Score=18.24 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 93 TTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+.+.|..++....+.++.+|+..+....|
T Consensus 8 s~dtLEkv~e~~~~~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 8 SLDTLEKVIEHNRYKLTDDELEAFNSAAD 36 (57)
T ss_dssp -HHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CHhhHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 44556666666666667776666655544
No 219
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=52.72 E-value=44 Score=19.29 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAAL-DDKLNPEDLDGIIQE 119 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~e~~~l~~~ 119 (131)
..+..+|+.|-. +.|+.+.+..++.+. |..++..+++-+...
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 445555555532 235555555555554 345555555544443
No 220
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=52.59 E-value=20 Score=15.27 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHHcCCCC
Q psy3155 91 YITTATLREILAALDDKL 108 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~ 108 (131)
.++..+|+..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 466778888888877654
No 221
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=52.32 E-value=30 Score=17.26 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHHHHhhc
Q psy3155 105 DDKLNPEDLDGIIQEID 121 (131)
Q Consensus 105 ~~~~~~~e~~~l~~~~d 121 (131)
|..++.+++..++..++
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 55555555555555554
No 222
>PHA02335 hypothetical protein
Probab=51.89 E-value=42 Score=18.81 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCC--cccHHHHHHHHHHcC
Q psy3155 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNG--YITTATLREILAALD 105 (131)
Q Consensus 49 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--~i~~~el~~~l~~~~ 105 (131)
-..|++++|..-++.+ ..++..|+.|.+.++- .+=.+.+..++..+|
T Consensus 22 p~sVt~ddf~~DlkRi----------~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~ 70 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF----------KYIKRLFKRYLNTGELKTHLILNHIIILYNVFG 70 (118)
T ss_pred cccccHHHHHHHHHHH----------HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh
Confidence 3468999988777666 5577777777666654 334455555555554
No 223
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.63 E-value=27 Score=16.21 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 88 GNGYIT-TATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 88 ~~g~i~-~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
..|.|+ ..++...|...|..++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 345665 344455555668888888888877653
No 224
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=50.11 E-value=35 Score=17.45 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.-+.+||...|...|..++..-+..-++.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4578899999999999999999888887774
No 225
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=46 Score=18.73 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
-|+.+.++.++...|..+.+.-+..++..+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 7999999999999999999998888887764
No 226
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=49.98 E-value=33 Score=17.00 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGII 117 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~ 117 (131)
-+.+++..+.+..|+.++.+++...-
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~~ 50 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEAG 50 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45788999999999999999987643
No 227
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=49.82 E-value=39 Score=17.82 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQ 118 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~ 118 (131)
|+..+++.+.+.+| +++.+++.+-.
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 56667777777777 66666655533
No 228
>KOG1264|consensus
Probab=49.48 E-value=35 Score=26.63 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=53.3
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHH--hhh
Q psy3155 8 FDTAKTGFIDTLKISTILNTMGQLFDDTE-LQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAF--RLY 84 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~l~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 84 (131)
.|......|+..++..+|....+.++... +.+-+.. +....+.++|.+|..+....+.+....... .....| ..-
T Consensus 153 vd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~-e~~~~~~~~~~ 230 (1267)
T KOG1264|consen 153 VDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILL-EFKKDFILGNT 230 (1267)
T ss_pred ccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhh-cccchhhhcCC
Confidence 44444556888888888877666554332 2233333 233466799999999988776653211111 111111 111
Q ss_pred CCCCCCcccHHHHHHHHHHc
Q psy3155 85 DREGNGYITTATLREILAAL 104 (131)
Q Consensus 85 D~~~~g~i~~~el~~~l~~~ 104 (131)
+...--.|+..+|.++|...
T Consensus 231 ~~~d~~vV~~~ef~rFL~~~ 250 (1267)
T KOG1264|consen 231 DRPDASVVYLQEFQRFLIHE 250 (1267)
T ss_pred CCccceEeeHHHHHHHHHhh
Confidence 22223468899999988753
No 229
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=49.01 E-value=46 Score=18.44 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=37.4
Q ss_pred hHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCC---CCCCceeHhhHHHHHhhhc
Q psy3155 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDP---DATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 2 ~~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~---~~~~~i~~~ef~~~~~~~~ 65 (131)
++.|..+.. +|+|+...|..++ |+.-+++-..++|..+.. -....|+.+|...++..+.
T Consensus 33 E~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 33 EKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 345666666 7999999887765 566678888888877632 1245688888777766553
No 230
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=48.64 E-value=24 Score=15.10 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=13.7
Q ss_pred cccHHHHHHHHHHcCCCCC
Q psy3155 15 FIDTLKISTILNTMGQLFD 33 (131)
Q Consensus 15 ~i~~~~l~~~l~~l~~~~~ 33 (131)
.++..++...++..|++.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4677888888888887643
No 231
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=48.40 E-value=49 Score=18.62 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred hhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhh
Q psy3155 7 MFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATH 63 (131)
Q Consensus 7 ~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 63 (131)
.+-..++..++.+++..+|...|..+...++..+.+.+.. .+..+.+.....
T Consensus 9 L~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 9 LAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 3444566689999999999999999998888888887632 456666655444
No 232
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=47.89 E-value=35 Score=16.71 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=36.4
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
.....++.+|..-. +.+.++..++-..|. +++.-+-++++.+. ..|.|.+
T Consensus 5 ~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~--~~GlV~~ 54 (60)
T PF01325_consen 5 SEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLA--EKGLVEY 54 (60)
T ss_dssp HHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHH--HCCCEEe
Confidence 34567788888875 677899999888875 88888999998875 3455543
No 233
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=47.08 E-value=52 Score=18.48 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.||.+.+..+|...|..+.+.-+..+++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999999998888887763
No 234
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=46.89 E-value=49 Score=18.16 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 94 TATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 94 ~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
...|...|+.++.....+.+..++..
T Consensus 69 ~~~Li~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 69 YRTLIKTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHh
Confidence 46788888888888887887777653
No 235
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=46.55 E-value=39 Score=16.99 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=8.7
Q ss_pred CCCCCHHHHHHHHHhhc
Q psy3155 105 DDKLNPEDLDGIIQEID 121 (131)
Q Consensus 105 ~~~~~~~e~~~l~~~~d 121 (131)
|..++.+++..+++.++
T Consensus 16 G~~i~~~~i~~~L~~lg 32 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLG 32 (70)
T ss_dssp TS---HHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 56666666666666654
No 236
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=46.26 E-value=36 Score=17.97 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccc
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEED 68 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 68 (131)
+++.+...+...++.-..|.++.+.|+..+...+..+
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt~ 52 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELLNTH 52 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccH
Confidence 5666666666666556678899999999888887653
No 237
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=45.93 E-value=16 Score=22.22 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
..++..+++.+-.++...++..+|...| -+|..++++++...+..+
T Consensus 84 ~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 84 NLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 4577788888855555578888888775 357889999998776554
No 238
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=45.17 E-value=83 Score=20.32 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=55.7
Q ss_pred CCCcccHHHHHHHHHHcCCC----------CCHHHHHHHHhhc-----CCCCCCceeHhhHHHHHhhhcccccHHHhHHH
Q psy3155 12 KTGFIDTLKISTILNTMGQL----------FDDTELQALIDEN-----DPDATGKVNFDGFCRIATHFLEEDDAEAMQEE 76 (131)
Q Consensus 12 ~~g~i~~~~l~~~l~~l~~~----------~~~~~~~~~~~~~-----d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 76 (131)
.++.++.+....+++.+|.+ -..+|++.+.+.+ -....|.|+.+.|..+++..+.. .-..-
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~lda----Gv~kv 206 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDA----GVEKV 206 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHc----CCCee
Confidence 35678888888899888754 2356665555543 23567889988888887766543 22234
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 77 LKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 77 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
+..+|...=....|.--.+++++++..
T Consensus 207 iPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 207 IPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred ccccceeccccccCCCCHHHHHHHHHH
Confidence 555666552345666666777766653
No 239
>KOG4286|consensus
Probab=44.70 E-value=72 Score=24.71 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy3155 36 ELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL 101 (131)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 101 (131)
.+.-++..||...+|.|..-+|.-.+..+... ...+.++.+|......++.++ ...|...|
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~----~leek~~ylF~~vA~~~sq~~-q~~l~lLL 531 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKA----HLEDKYRYLFKQVASSTSQCD-QRRLGLLL 531 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcc----hhHHHHHHHHHHHcCchhhHH-HHHHHHHH
Confidence 34678888999999999999998887777665 556788899999866666554 44444333
No 240
>PF13592 HTH_33: Winged helix-turn helix
Probab=44.39 E-value=40 Score=16.38 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHH-cCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAA-LDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~d 121 (131)
..+..++..++.. +|...+..-+..+++.++
T Consensus 4 ~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 4 RWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred cccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 3444555555544 455555555555555544
No 241
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=44.09 E-value=74 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=24.9
Q ss_pred hhCCCCCCcc--cHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 83 LYDREGNGYI--TTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 83 ~~D~~~~g~i--~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
.||.+.+..| ..+.|+.++..+|..+..+-++++..-+
T Consensus 359 ~FD~ERSD~VyKiLnKlK~v~st~~~~V~hQSLDdi~~~~ 398 (445)
T PF13608_consen 359 MFDAERSDCVYKILNKLKGVFSTMGQDVRHQSLDDIEDIF 398 (445)
T ss_pred HhCchhhHHHHHHHHHHHHHHhccCCCccCCCccchhhhh
Confidence 4577777766 3567888888888766555455555433
No 242
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=43.77 E-value=58 Score=18.10 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 90 GYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 90 g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
-.+|.+++..+++..|..+...-+..+++.+
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 3699999999999999888877777666655
No 243
>PRK00441 argR arginine repressor; Provisional
Probab=43.53 E-value=71 Score=19.06 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 88 GNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
..+..+.++|...|...|..++..-+..-+..+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 3567888999999999999999998888777765
No 244
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=43.35 E-value=1.1e+02 Score=21.31 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=35.7
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHcCCCC-------C----HHHHHHHHhhcCCCCCCceeHhh
Q psy3155 5 FQMFDTAKTGFIDTLKISTILNTMGQLF-------D----DTELQALIDENDPDATGKVNFDG 56 (131)
Q Consensus 5 f~~~d~~~~g~i~~~~l~~~l~~l~~~~-------~----~~~~~~~~~~~d~~~~~~i~~~e 56 (131)
|...+.+.++.++.++=..++...|++. + .+++..+.+.++.++...|-+.+
T Consensus 171 FDire~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kd 233 (382)
T COG1423 171 FDIREKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKD 233 (382)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcCCcceEecC
Confidence 4445566778899999888888888752 1 25678888888776654444443
No 245
>KOG2301|consensus
Probab=42.75 E-value=25 Score=29.44 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=30.9
Q ss_pred HhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC
Q psy3155 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDD 106 (131)
Q Consensus 72 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~ 106 (131)
...+...++|..+|++..|.|...++..+++.+..
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCC
Confidence 45678899999999999999999999999998643
No 246
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=42.24 E-value=62 Score=18.01 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 96 TLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 96 el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
-+...|...|..+++++++.+++..
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677789999999999888764
No 247
>KOG4301|consensus
Probab=42.17 E-value=31 Score=23.76 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred hhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhc
Q psy3155 6 QMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 6 ~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 65 (131)
..+|+.+.|.++.--...+|..+.-..-.+.++.+|... .+.+|-+.+-.|..++....
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHH
Confidence 456777888888777777776654444466778888775 45667666666666655543
No 248
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=42.10 E-value=92 Score=22.81 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=36.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhh
Q psy3155 3 KAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 3 ~~f~~~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 64 (131)
.+|.++-+.+...++..+++.++.++|.....++--..|..-+. ....+.|..|+..+...
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~-s~~gv~yl~v~~~i~se 549 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG-SVSGVFYLDVLKGIHSE 549 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc-ccccchHHHHHHHHhhh
Confidence 35666666667789999999999999876654443333332211 11135566666555444
No 249
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=41.14 E-value=41 Score=18.80 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=9.9
Q ss_pred HcCCCCCHHHHHHHHHhh
Q psy3155 103 ALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 103 ~~~~~~~~~e~~~l~~~~ 120 (131)
.++..++++++.+++..+
T Consensus 96 ~~~~r~~ee~l~~iL~~v 113 (117)
T PF03874_consen 96 SLESRFSEEDLEEILDLV 113 (117)
T ss_dssp TGTTTSTHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHH
Confidence 334456666666665543
No 250
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=40.96 E-value=54 Score=16.96 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=31.8
Q ss_pred ceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCccc--HHHHHHHHHHcCCCCCHHH
Q psy3155 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT--TATLREILAALDDKLNPED 112 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~--~~el~~~l~~~~~~~~~~e 112 (131)
..+|++|...+.....+. .....++.-+..+-. +++.|. ..+|..++..++..++++.
T Consensus 26 ~~~W~~~~~~~~~~f~~~---~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~~~~e~~ 85 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPP---DRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPPPMDEEM 85 (96)
T ss_pred CCCHHHHHHHHHHHHhhh---hccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCCCcCHHH
Confidence 568999998888776653 333444444444433 444443 2345555555554455544
No 251
>KOG2419|consensus
Probab=40.66 E-value=58 Score=24.76 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=46.0
Q ss_pred HHHHhhcCCCCCCceeHhhHHHHHhhhcccccH-----HHhHHHHHHHHhhhCCCCC-----------------------
Q psy3155 38 QALIDENDPDATGKVNFDGFCRIATHFLEEDDA-----EAMQEELKEAFRLYDREGN----------------------- 89 (131)
Q Consensus 38 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-----~~~~~~~~~~f~~~D~~~~----------------------- 89 (131)
..++..+|.+.+++++|.+|......+...-.. -+.......+|..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 566677788999999999999886665332100 0112235668888888888
Q ss_pred CcccHHHHHHHHH
Q psy3155 90 GYITTATLREILA 102 (131)
Q Consensus 90 g~i~~~el~~~l~ 102 (131)
|.++.+|+..++.
T Consensus 520 ~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 520 GVVTVDELVALLA 532 (975)
T ss_pred CeeEHHHHHHHHH
Confidence 8999999887776
No 252
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=40.23 E-value=1e+02 Score=21.22 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=35.1
Q ss_pred HcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy3155 27 TMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL 101 (131)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 101 (131)
+.|+.....++....+ .|.|+-+|=+..+...... .+...++..++.++ ||.+||..++
T Consensus 284 KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~----~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFGRATDHASIDIR------SGRITREEAIELVKEYDGE----FPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred hcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhccc----ccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4566544444443332 4678888877777763222 44566777777774 5666666654
No 253
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=40.21 E-value=70 Score=21.93 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccC
Q psy3155 89 NGYITTATLREILAALDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 89 ~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~ 123 (131)
.|.||++|-...++......+++.++.+++.++.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg~t 334 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLGIS 334 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhCCC
Confidence 56677776666666654455556666666665543
No 254
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=40.14 E-value=1.3e+02 Score=21.76 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 86 REGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
......++.++++++-+.....++++|.+++.+.+
T Consensus 383 ~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 383 TSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34456799999999999999999999987765544
No 255
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.01 E-value=37 Score=21.01 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGI 116 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l 116 (131)
.+.++++|.-||+..=-..+.+++.+.+..-+.--....+..+
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Av 94 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEAT 94 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHH
Confidence 4788999999998887778888888888776644444444443
No 256
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=39.28 E-value=46 Score=15.64 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHH-cCCCCCHHHHHHHHH
Q psy3155 89 NGYITTATLREILAA-LDDKLNPEDLDGIIQ 118 (131)
Q Consensus 89 ~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~ 118 (131)
.+.+|.+.|...|.. .|...++++++-.+.
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~ 46 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVD 46 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 356899999999887 588899999876554
No 257
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.00 E-value=61 Score=17.02 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=9.0
Q ss_pred ccHHHHHHHHHHcC
Q psy3155 92 ITTATLREILAALD 105 (131)
Q Consensus 92 i~~~el~~~l~~~~ 105 (131)
|+...++++++.+|
T Consensus 9 VP~~~wk~F~R~LG 22 (77)
T cd08815 9 VPARRWKEFVRTLG 22 (77)
T ss_pred CChHHHHHHHHHcC
Confidence 55566666666666
No 258
>PF11181 YflT: Heat induced stress protein YflT
Probab=38.54 E-value=70 Score=17.52 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 95 ATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 95 ~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
++++..|..+| ++++++...-+.++.
T Consensus 71 d~~~~~l~~lG--l~~~ea~~y~~~l~~ 96 (103)
T PF11181_consen 71 DELRSKLESLG--LSEDEAERYEEELDQ 96 (103)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 46888999888 889999998888763
No 259
>PHA02105 hypothetical protein
Probab=38.29 E-value=53 Score=16.11 Aligned_cols=50 Identities=6% Similarity=-0.040 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCCCCC--ceeHhhHHHHHhhh
Q psy3155 15 FIDTLKISTILNTM---GQLFDDTELQALIDENDPDATG--KVNFDGFCRIATHF 64 (131)
Q Consensus 15 ~i~~~~l~~~l~~l---~~~~~~~~~~~~~~~~d~~~~~--~i~~~ef~~~~~~~ 64 (131)
+++.+++..++..- ..++..+.+..+-..|..-+-. .++|+||-.++-..
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 46788888888654 3455566666655555443322 47888888776544
No 260
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=38.00 E-value=37 Score=14.21 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=5.2
Q ss_pred ccHHHHHHHHH
Q psy3155 92 ITTATLREILA 102 (131)
Q Consensus 92 i~~~el~~~l~ 102 (131)
||.+|++.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55566665554
No 261
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=37.52 E-value=34 Score=14.99 Aligned_cols=19 Identities=5% Similarity=0.364 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHH
Q psy3155 92 ITTATLREILAALDDKLNPEDLDG 115 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~ 115 (131)
++.+||..++. ++.+++..
T Consensus 2 Lsd~dF~~vFg-----m~~~eF~~ 20 (36)
T PF02209_consen 2 LSDEDFEKVFG-----MSREEFYK 20 (36)
T ss_dssp S-HHHHHHHHS-----S-HHHHHH
T ss_pred cCHHHHHHHHC-----CCHHHHHH
Confidence 55666666663 55555443
No 262
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=37.31 E-value=47 Score=15.24 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHH
Q psy3155 19 LKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58 (131)
Q Consensus 19 ~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 58 (131)
++...+|..+| .++.++......... ...++.++.+
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 56777888888 456777777766543 2334455543
No 263
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=37.04 E-value=21 Score=17.93 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=16.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy3155 89 NGYITTATLREILAALDDKLNPEDLDGIIQ 118 (131)
Q Consensus 89 ~g~i~~~el~~~l~~~~~~~~~~e~~~l~~ 118 (131)
.|.++..-+..+++.+-.....+++..++.
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlh 76 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLH 76 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 355666666666666555455556665554
No 264
>KOG0506|consensus
Probab=36.91 E-value=78 Score=23.11 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
.-+|..+-...++.++.-.|.++|++.|..-++--+..+++.+
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 3477777555579999999999999999888887777776654
No 265
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=36.79 E-value=82 Score=17.84 Aligned_cols=30 Identities=13% Similarity=0.513 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
-+..++..++-.+...+++++++.|+..+.
T Consensus 83 ~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~ 112 (118)
T smart00657 83 ETAEEAQLLIPSLEERIDEEELEELLDDLS 112 (118)
T ss_pred CCHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 356677777777777788888888877653
No 266
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=36.59 E-value=79 Score=18.55 Aligned_cols=39 Identities=15% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHcC---------CCCCHHHHHHHHHhhccCCCC
Q psy3155 88 GNGYITTATLREILAALD---------DKLNPEDLDGIIQEIDTDGSG 126 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~---------~~~~~~e~~~l~~~~d~~~~g 126 (131)
++..||.+||.+....-. ..+.++++..+.+.+...+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~ 127 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKG 127 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhcccc
Confidence 556789999988888721 357888888888888765543
No 267
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=36.56 E-value=59 Score=16.12 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=7.1
Q ss_pred cccHHHHHHHHHHcC
Q psy3155 91 YITTATLREILAALD 105 (131)
Q Consensus 91 ~i~~~el~~~l~~~~ 105 (131)
.++...++.++...|
T Consensus 44 ~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 44 KVDPSKLKEWLDSQG 58 (64)
T ss_pred eeCHHHHHHHHHHCC
Confidence 344444554444444
No 268
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=36.24 E-value=78 Score=17.43 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhc
Q psy3155 16 IDTLKISTILNTMGQLFDDTELQALIDEN 44 (131)
Q Consensus 16 i~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 44 (131)
++..+..-+|..+...++++++..+...+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 44445555555555556666666555555
No 269
>KOG0039|consensus
Probab=36.18 E-value=1.7e+02 Score=22.34 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhccccc----HHHhHHHHHHHHhhhCCCC
Q psy3155 13 TGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDD----AEAMQEELKEAFRLYDREG 88 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~----~~~~~~~~~~~f~~~D~~~ 88 (131)
++ ++.+++. +.....+..++.++..+|. ++|.++-+++..++........ .....+....++...|.++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 45 7777777 2223446667788877776 7788888888777665433211 1123344566888889999
Q ss_pred CCcccHHHHHHHHHH
Q psy3155 89 NGYITTATLREILAA 103 (131)
Q Consensus 89 ~g~i~~~el~~~l~~ 103 (131)
.|++...++...+..
T Consensus 75 ~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQ 89 (646)
T ss_pred cceeeecchhHHHHh
Confidence 999998888877764
No 270
>PRK04280 arginine repressor; Provisional
Probab=35.90 E-value=98 Score=18.47 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
=+.+||...|...|..++..-+..-++++.
T Consensus 19 ~tQeeL~~~L~~~Gi~vTQATiSRDikeL~ 48 (148)
T PRK04280 19 ETQDELVDRLREEGFNVTQATVSRDIKELH 48 (148)
T ss_pred CCHHHHHHHHHHcCCCeehHHHHHHHHHcC
Confidence 357789999999999998888877777664
No 271
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=35.08 E-value=53 Score=15.11 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q psy3155 93 TTATLREILAALDDKLNPEDL 113 (131)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~e~ 113 (131)
+.+++..+-+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888889999988775
No 272
>KOG1977|consensus
Probab=34.73 E-value=2e+02 Score=22.64 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHH--------cCCCCCHHHHHHHHHhhc
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAA--------LDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~--------~~~~~~~~e~~~l~~~~d 121 (131)
..+-++...+..+++|+++|+.. +.++|.+ +|..++..|+..++..+.
T Consensus 1028 ~~e~i~~~~el~~t~gsstlP~t-v~kVLnSkACrgAImFgD~L~~qEc~~lI~~Ls 1083 (1142)
T KOG1977|consen 1028 VEEFIREQLELLQTTGSSTLPLT-VQKVLNSKACRGAIMFGDGLSLQECCRLIEALS 1083 (1142)
T ss_pred HHHHHHHHHHHhccCCCCccCHH-HHHHHhhhhhhhceeeCCccCHHHHHHHHHHHH
Confidence 34667889999999999999986 4445443 688999999999988764
No 273
>KOG4301|consensus
Probab=34.16 E-value=1.4e+02 Score=20.82 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 38 QALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 38 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
..+...+|..+.|+++.-...-.+.-.... ....+++.+|... .+.+|.+..-.+.++++.
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~g----k~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGG----KIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccc----hHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 455566777777777655544443333333 3467889999998 566787777777777776
No 274
>KOG4403|consensus
Probab=34.12 E-value=1.6e+02 Score=21.29 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=31.0
Q ss_pred CceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 50 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
...+-.+|+................+.++.+-+.+|.+.+|.|+.+|=-.+++.
T Consensus 43 s~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 43 SRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred chhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 334444555554444433333345566666777777777777777666666665
No 275
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=34.08 E-value=1.8e+02 Score=22.35 Aligned_cols=96 Identities=18% Similarity=0.313 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCcee----HhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCc
Q psy3155 16 IDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVN----FDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGY 91 (131)
Q Consensus 16 i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~----~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 91 (131)
++...+..++..+|.++...-+ ..++++..+..|.+. ...|..++..... +.-......++++-..| .
T Consensus 598 l~~~nl~~f~~elg~~l~~~l~-~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~-~~v~~~F~~L~~l~nl~------~ 669 (710)
T PF07393_consen 598 LDGSNLDVFLQELGERLHRLLL-KHLKKFTVSSTGGLQLIKDLNEYQDFIRSWGI-PSVDEKFEALKELGNLF------I 669 (710)
T ss_pred ccchhHHHHHHHHHHHHHHHHH-HHHHhCccCchhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhhe------e
Confidence 3344455555555554433333 333445555666543 2233333333211 11123445666666666 4
Q ss_pred ccHHHHHHHHHHcC-CCCCHHHHHHHHHh
Q psy3155 92 ITTATLREILAALD-DKLNPEDLDGIIQE 119 (131)
Q Consensus 92 i~~~el~~~l~~~~-~~~~~~e~~~l~~~ 119 (131)
|.++.+..+++... -.++.+++.++++.
T Consensus 670 v~~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 670 VDPENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred ecHHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 67788888887754 35788888887754
No 276
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=33.94 E-value=62 Score=19.38 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
..+..-....|.++.++||..+|++++=.
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 45566667777888888999999887765
No 277
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=33.71 E-value=1.1e+02 Score=18.21 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 87 EGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
......+.+|+...|+..|..++..-+-..++.++
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 34456788888888888888888888877777765
No 278
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=33.66 E-value=39 Score=21.08 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHH
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDG 115 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~ 115 (131)
..+.++.+|.-||+..=-..+.+++.+++..-+.--....+..
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~A 94 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQA 94 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHH
Confidence 3478999999999887777788889888876554333444433
No 279
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=33.64 E-value=82 Score=16.88 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKL 108 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~ 108 (131)
++...+..+.+.-....-..--|++....+..+.. +-++.+-....-.+..+|+.+++.-+++..|.++
T Consensus 14 i~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~--------~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 14 ITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLE--------DVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred CCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 45556666666543222222225555555544432 2334444444445677899999999999888543
No 280
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=33.58 E-value=46 Score=14.02 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.5
Q ss_pred CCcccHHHHHHHHHH
Q psy3155 89 NGYITTATLREILAA 103 (131)
Q Consensus 89 ~g~i~~~el~~~l~~ 103 (131)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777666543
No 281
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=33.23 E-value=24 Score=18.50 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=5.4
Q ss_pred eeHhhHHHHHhh
Q psy3155 52 VNFDGFCRIATH 63 (131)
Q Consensus 52 i~~~ef~~~~~~ 63 (131)
..|..|++++..
T Consensus 44 p~fPkFLn~LGt 55 (88)
T PF15144_consen 44 PDFPKFLNLLGT 55 (88)
T ss_pred CchHHHHHHhhH
Confidence 444444444433
No 282
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=32.98 E-value=1.1e+02 Score=19.53 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 86 REGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.+..|+...+++...++..+..++.+.+..+++.-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 688999999999999999999999999988887644
No 283
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=32.72 E-value=52 Score=14.36 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHhhccCCCCcc
Q psy3155 108 LNPEDLDGIIQEIDTDGSGTV 128 (131)
Q Consensus 108 ~~~~e~~~l~~~~d~~~~g~i 128 (131)
++++++..++..+-.+++|..
T Consensus 13 cs~edL~~L~~~Lt~dkdG~~ 33 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGKK 33 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCCc
Confidence 567778888877766677653
No 284
>PF11445 DUF2894: Protein of unknown function (DUF2894); InterPro: IPR021549 This is a bacterial family of uncharacterised proteins.
Probab=32.64 E-value=1.3e+02 Score=19.05 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.2
Q ss_pred hhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 55 DGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 55 ~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
+.|...+... .....++..+... +.+-|-++..-|..-.-.+--.+++..+..++.++|
T Consensus 131 ~~fR~tws~~-------~~e~qlrqsl~qv-P~nAGPLNS~~LVhRsL~lMrelSP~YL~~FlsYvD 189 (200)
T PF11445_consen 131 DYFRETWSRV-------SAEQQLRQSLEQV-PENAGPLNSHRLVHRSLSLMRELSPGYLQQFLSYVD 189 (200)
T ss_pred HHHHHHHHHh-------hHHHHHHHHHHhC-CCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 3455555555 4557888888877 888999999887655444455688999999888876
No 285
>COG5562 Phage envelope protein [General function prediction only]
Probab=31.98 E-value=35 Score=20.03 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=16.8
Q ss_pred hcCCCCCcccHHHHHHHHHHcCC
Q psy3155 8 FDTAKTGFIDTLKISTILNTMGQ 30 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~l~~ 30 (131)
+.++..|..++++++..+...|.
T Consensus 81 l~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 81 LRRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHHhcCCccHHHHHHHHHhCCe
Confidence 34556788888888888877774
No 286
>PRK05066 arginine repressor; Provisional
Probab=31.90 E-value=1.2e+02 Score=18.30 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHcCCC-CCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDK-LNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~-~~~~e~~~l~~~~d 121 (131)
.=+.+||...|...|.. ++..-+..-++.+.
T Consensus 23 I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL~ 54 (156)
T PRK05066 23 FGSQGEIVTALQEQGFDNINQSKVSRMLTKFG 54 (156)
T ss_pred CCCHHHHHHHHHHCCCCeecHHHHHHHHHHcC
Confidence 34678999999999999 89988887777765
No 287
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=31.64 E-value=1.3e+02 Score=18.60 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=30.5
Q ss_pred hCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhcc
Q psy3155 84 YDREGNGYITTATLREILAAL--DDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 84 ~D~~~~g~i~~~el~~~l~~~--~~~~~~~e~~~l~~~~d~ 122 (131)
+.++....+|.++|.+.++.. |..++.+.+.+++..+-.
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 345556789999999999875 458999999999887754
No 288
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=31.50 E-value=1.1e+02 Score=17.50 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=23.7
Q ss_pred ceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
..+.++|+.-+...............++.+|..+ ...|+..++..+..
T Consensus 68 ~~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l----~~~v~~ge~~~v~~ 115 (125)
T PF10025_consen 68 RFDLDEFLARVAERLGGADEDDAERLARAVFAAL----REAVSEGEFEDVRS 115 (125)
T ss_dssp --SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHH----HHHS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCCCcccHHHHHHHHHHHH----HHHCCHHHHHHHHH
Confidence 3888888888777443321113344555555555 22355555555544
No 289
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=31.42 E-value=75 Score=15.80 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
+|..++...+...|..++..-+...+..
T Consensus 14 ~s~~~i~~~l~~~~~~vS~~TI~r~L~~ 41 (72)
T PF01498_consen 14 ISAREIAQELQEAGISVSKSTIRRRLRE 41 (72)
T ss_dssp --HHHHHHHT---T--S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCcCHHHHHHHHHH
Confidence 4444444444444444555444444443
No 290
>smart00153 VHP Villin headpiece domain.
Probab=31.37 E-value=56 Score=14.28 Aligned_cols=11 Identities=9% Similarity=0.483 Sum_probs=6.6
Q ss_pred ccHHHHHHHHH
Q psy3155 92 ITTATLREILA 102 (131)
Q Consensus 92 i~~~el~~~l~ 102 (131)
++.+||..++.
T Consensus 2 LsdeeF~~vfg 12 (36)
T smart00153 2 LSDEDFEEVFG 12 (36)
T ss_pred CCHHHHHHHHC
Confidence 55666666653
No 291
>PTZ00015 histone H4; Provisional
Probab=31.29 E-value=1e+02 Score=17.22 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC
Q psy3155 31 LFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDK 107 (131)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 107 (131)
.++...+..+.+......-..--|++....+..+.. .-++.+.....-.+.-+|+.+++.-+++..|.+
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~--------~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLE--------NVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 355666777776654433333346666555554432 234444444444577789999999999887754
No 292
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=30.84 E-value=2e+02 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=37.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCC
Q psy3155 78 KEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDG 124 (131)
Q Consensus 78 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~ 124 (131)
+.+.-..+.-+.|.++.+|..++|..+...-..-+++++++....+.
T Consensus 458 ~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 458 RDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 34444556677788999999999999988888888889988876553
No 293
>PHA03155 hypothetical protein; Provisional
Probab=30.76 E-value=1.1e+02 Score=17.45 Aligned_cols=95 Identities=6% Similarity=0.043 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccH
Q psy3155 15 FIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITT 94 (131)
Q Consensus 15 ~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 94 (131)
..+.+++..-|..|.+ -+..++.-+..-....++.++-.+=..++...... ......+.+-......-.+.++.
T Consensus 7 ~~tvEeLaaeL~kL~~--ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~----Lt~~A~~KIe~kVrk~~~~~vTk 80 (115)
T PHA03155 7 CADVEELEKELQKLKI--ENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNK----LTKKAEEKIRERVLKDLLPLVSK 80 (115)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhccH
Confidence 5677888877776543 23444444433223455667766655444444332 33344555555665666677899
Q ss_pred HHHHHHHHHcCC--CCCHHHHHH
Q psy3155 95 ATLREILAALDD--KLNPEDLDG 115 (131)
Q Consensus 95 ~el~~~l~~~~~--~~~~~e~~~ 115 (131)
+++..++..+.+ .++-++.+.
T Consensus 81 ~q~~~al~~lt~RidvSmde~~~ 103 (115)
T PHA03155 81 NQCMEAIADIKYRIDVSIDESQD 103 (115)
T ss_pred HHHHHHHhcCeeeEEecccchhc
Confidence 999999988543 445444443
No 294
>KOG2278|consensus
Probab=30.75 E-value=83 Score=19.53 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=30.0
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhcCC
Q psy3155 8 FDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDP 46 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~ 46 (131)
+.-.++|++..+++...-+.-|...+-++++.+.+.-++
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 445678999999988777766777888888888876543
No 295
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=30.06 E-value=61 Score=15.99 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=11.9
Q ss_pred HHhhhCCCCCCcccHHHHH
Q psy3155 80 AFRLYDREGNGYITTATLR 98 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~ 98 (131)
+.+.++.+++|+|+...+.
T Consensus 20 L~~~~~~~~~g~Vpi~~i~ 38 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTIL 38 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHT
T ss_pred HHHHHHhcCCCcEeHHHHH
Confidence 3344556667888776554
No 296
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=29.89 E-value=93 Score=16.37 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHHHHcCCC-----CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCC
Q psy3155 13 TGFIDTLKISTILNTMGQL-----FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~-----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 87 (131)
+|.++..|...+...+... .+..++..++...-.. ..+...+...+...... .....-+..++... .
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~r~~~l~~~~~ia--~ 84 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDA---ELREALLAALWEVA--L 84 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCH---HHHHHHHHHHHHHH--H
Confidence 7899998877666544221 1233344444332211 22344555554444321 13334455556655 3
Q ss_pred CCCcccHHHHH
Q psy3155 88 GNGYITTATLR 98 (131)
Q Consensus 88 ~~g~i~~~el~ 98 (131)
-+|.++..|..
T Consensus 85 aDG~~~~~E~~ 95 (104)
T cd07177 85 ADGELDPEERA 95 (104)
T ss_pred hccCCCHHHHH
Confidence 44567665544
No 297
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=29.68 E-value=34 Score=18.00 Aligned_cols=23 Identities=4% Similarity=0.055 Sum_probs=12.0
Q ss_pred HHhhcCCCCCCceeHhhHHHHHh
Q psy3155 40 LIDENDPDATGKVNFDGFCRIAT 62 (131)
Q Consensus 40 ~~~~~d~~~~~~i~~~ef~~~~~ 62 (131)
++..+..+..+.++..+....+.
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK 64 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHcc
Confidence 33333345667788888777766
No 298
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=29.56 E-value=61 Score=16.21 Aligned_cols=35 Identities=11% Similarity=0.448 Sum_probs=18.9
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 82 RLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
..||.+.+|.|+ ...+..+++.+..+.=..|.|+|
T Consensus 27 ~VFd~~~~~~v~--------------~d~a~~~~v~~~v~~CPSGAL~~ 61 (64)
T PF06902_consen 27 EVFDQDDEPWVS--------------PDEASAEEVREAVDRCPSGALSY 61 (64)
T ss_pred CcccCCCCCcCC--------------cCccCHHHHHHHHHcCCccCcEE
Confidence 456677777772 23333444555554445666654
No 299
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=29.50 E-value=23 Score=14.80 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=6.8
Q ss_pred HHHhhccCCCCccc
Q psy3155 116 IIQEIDTDGSGTVD 129 (131)
Q Consensus 116 l~~~~d~~~~g~i~ 129 (131)
++..=|.|++-.|+
T Consensus 4 LL~qEDTDgn~qIT 17 (30)
T PF07492_consen 4 LLEQEDTDGNFQIT 17 (30)
T ss_pred HhhccccCCCcEEE
Confidence 44444555555544
No 300
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=29.43 E-value=1.6e+02 Score=18.84 Aligned_cols=33 Identities=12% Similarity=0.415 Sum_probs=16.6
Q ss_pred HHHHHHHhhcCCCCCCce-eHhhHHHHHhhhccc
Q psy3155 35 TELQALIDENDPDATGKV-NFDGFCRIATHFLEE 67 (131)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i-~~~ef~~~~~~~~~~ 67 (131)
.++...|+..-.+.+..+ ++.-.+.++..++..
T Consensus 84 ~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~ 117 (205)
T PF12238_consen 84 EKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDS 117 (205)
T ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHhcc
Confidence 344444544444444455 555555555555444
No 301
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=29.12 E-value=1e+02 Score=16.71 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=8.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 98 REILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 98 ~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
+.+|+.-|..++.+++..++..+
T Consensus 15 k~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 15 KHLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHHCCT----HHHHHHHHHHH
T ss_pred HHHHHHcCeeecHHHHHHHHHHH
Confidence 33333344444444444444433
No 302
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.08 E-value=93 Score=16.14 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=7.4
Q ss_pred ccHHHHHHHHHHcC
Q psy3155 92 ITTATLREILAALD 105 (131)
Q Consensus 92 i~~~el~~~l~~~~ 105 (131)
|+..+.+.+.+.+|
T Consensus 9 v~~~~Wk~laR~LG 22 (79)
T cd08784 9 VPFDQHKRFFRKLG 22 (79)
T ss_pred CCHHHHHHHHHHcC
Confidence 44455555555555
No 303
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=28.87 E-value=96 Score=16.19 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhccC
Q psy3155 96 TLREILAALDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 96 el~~~l~~~~~~~~~~e~~~l~~~~d~~ 123 (131)
.+...+..+|.+-+++.|+.++......
T Consensus 7 ~l~~LF~QLGL~~~~~~I~~FI~~H~L~ 34 (74)
T PF10982_consen 7 TLSNLFAQLGLDSSDEAIEAFIETHQLP 34 (74)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHS---
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence 4667777778888888888888876643
No 304
>KOG0144|consensus
Probab=28.58 E-value=58 Score=23.32 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhccCCC
Q psy3155 95 ATLREILAALDDKLNPEDLDGIIQEIDTDGS 125 (131)
Q Consensus 95 ~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~ 125 (131)
+|.+-+...+....++.|+++||..|+.-+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied 153 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIED 153 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccch
Confidence 4556667777888899999999988865444
No 305
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=28.47 E-value=1.3e+02 Score=18.66 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=10.0
Q ss_pred CCcccHHHHHHHHHHcCC
Q psy3155 89 NGYITTATLREILAALDD 106 (131)
Q Consensus 89 ~g~i~~~el~~~l~~~~~ 106 (131)
.|.+.+.+|+.++..++.
T Consensus 130 ~~~lhW~~F~aL~~~L~~ 147 (183)
T PF06854_consen 130 QGYLHWWKFKALFNGLSE 147 (183)
T ss_pred cccCcHHHHHHHHhcCCC
Confidence 455555555555555543
No 306
>KOG2623|consensus
Probab=28.24 E-value=2.3e+02 Score=20.36 Aligned_cols=71 Identities=8% Similarity=0.206 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhhcCCCCCCceeHhhHHHHHhhhcccccHHH-hHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 32 FDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEA-MQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
++.++++.+++..-++....+.-.....-+..+.+....-. .....+.+|.. ...+.+.++..|+.+.++.
T Consensus 316 l~l~eI~~I~~~H~k~P~~r~aQ~~LA~eVTr~VHG~egL~~A~r~T~al~g~-~~~~~~~ls~~ei~~lfk~ 387 (467)
T KOG2623|consen 316 LPLEEIKQILEEHRKEPSQRIAQKLLAAEVTRMVHGKEGLEVAERCTKALFGA-KKAGLSGLSLSEILQLFKD 387 (467)
T ss_pred CCHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHcccchHHHHHHHHHHhhcc-cccccccCCHHHHHHHHhc
Confidence 34556666666655554444444444444444444331111 11222233333 2467778888888888884
No 307
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.24 E-value=1.2e+02 Score=18.59 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CC-CCCHHHHHHHHHhhc
Q psy3155 47 DATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL----DD-KLNPEDLDGIIQEID 121 (131)
Q Consensus 47 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~----~~-~~~~~e~~~l~~~~d 121 (131)
..+..|+.++....+..- +-|.+.|.....-|+..-|.+++-.. |. -++-.-++.++..++
T Consensus 24 ~TSTYVTL~dla~mVk~g--------------edF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llpi~fLrQlI~fYG 89 (193)
T COG5394 24 GTSTYVTLEDLAQMVKEG--------------EDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLPISFLRQLISFYG 89 (193)
T ss_pred CCceeeeHHHHHHHHhcC--------------CceEEeeccccchhhHHHHHHHHHHHhccCCCccccHHHHHHHHHHHh
Confidence 334456666655554433 13556666555567776666666542 22 245555566665543
No 308
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.11 E-value=1.8e+02 Score=19.07 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHcCCC------CCHHHHHHHHhhcCCCCC-CceeHhhHHHH
Q psy3155 13 TGFIDTLKISTILNTMGQL------FDDTELQALIDENDPDAT-GKVNFDGFCRI 60 (131)
Q Consensus 13 ~g~i~~~~l~~~l~~l~~~------~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~ 60 (131)
.|.+....+..++..++.. +.++....+.+.+..+-+ +.|++.|.+.+
T Consensus 168 ~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 168 KGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 4556666666666655532 345555555666666655 56666665544
No 309
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=28.07 E-value=2.1e+02 Score=19.77 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHcCCCCCHHHHHHHHhhc--CCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 25 LNTMGQLFDDTELQALIDEN--DPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 25 l~~l~~~~~~~~~~~~~~~~--d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
+..+.+.+..++++.++..+ |.+....+-=++|......+ .+ .....-+..+-+....+=+|++=..|+.+-++
T Consensus 25 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l-~~---e~r~~FidFLerScTaEFSGflLYKEl~rrlk 100 (337)
T TIGR02029 25 MANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI-DG---ELRQAFIEFLERSCTSEFSGFLLYKELSRRLK 100 (337)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhC-CH---HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcC
Confidence 34556677778888888876 44444555556665543332 11 01112222333344555677777666666554
Q ss_pred HcCCCCCHHHHHHHHHhhccC
Q psy3155 103 ALDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 103 ~~~~~~~~~e~~~l~~~~d~~ 123 (131)
. .+..+.+++..+..|
T Consensus 101 ~-----~~P~lae~F~~MaRD 116 (337)
T TIGR02029 101 N-----RDPVVAELFQLMARD 116 (337)
T ss_pred C-----CChHHHHHHHHHhhh
Confidence 2 223345555544433
No 310
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=27.95 E-value=1.2e+02 Score=19.66 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=13.0
Q ss_pred cCCCCCHHHHHHHHhhcCCCCCCceeHhhHHH
Q psy3155 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCR 59 (131)
Q Consensus 28 l~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 59 (131)
+++.+++++++.+...+..-++-.+++.+|..
T Consensus 188 ~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ 219 (225)
T PF06207_consen 188 YNINLSDEQIQQIVNLMKKIQNLNIDWKQVKE 219 (225)
T ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34444444444444433322333344444433
No 311
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=27.26 E-value=30 Score=21.38 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGI 116 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l 116 (131)
.+.++.+|.-||++.=-..+.+++.+++..-+.--....+..+
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Av 90 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAV 90 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHH
Confidence 4778999999998877777888888887765554455544443
No 312
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=27.22 E-value=91 Score=15.38 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=12.3
Q ss_pred HHHHHHHhhh--CCCCCCcccHHHHHHHHHH
Q psy3155 75 EELKEAFRLY--DREGNGYITTATLREILAA 103 (131)
Q Consensus 75 ~~~~~~f~~~--D~~~~g~i~~~el~~~l~~ 103 (131)
+++....+.+ ++ +...++.++|+.+|..
T Consensus 15 ~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 15 DRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp HHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 4555555555 32 2233556666666543
No 313
>KOG1954|consensus
Probab=26.94 E-value=1.3e+02 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=16.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHH
Q psy3155 75 EELKEAFRLYDREGNGYITTATLREI 100 (131)
Q Consensus 75 ~~~~~~f~~~D~~~~g~i~~~el~~~ 100 (131)
.-+-.+|+..|.+++|.++.+||.-+
T Consensus 477 svlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 477 SVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44555666666666666666666443
No 314
>PTZ00315 2'-phosphotransferase; Provisional
Probab=26.91 E-value=1.7e+02 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 85 DREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 85 D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
..+.+|++..++|......-+..++.+.+.++++.=
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~n 434 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDS 434 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcC
Confidence 467899999999999887767778999999998753
No 315
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=26.62 E-value=76 Score=20.10 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 80 AFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 80 ~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
+..-+|.+++|.++.+|+..+-..
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHH
Confidence 344678999999999999887764
No 316
>PRK03341 arginine repressor; Provisional
Probab=26.54 E-value=1.6e+02 Score=18.05 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 87 EGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
...+..+.+||...|...|..++..-+..-++.+.
T Consensus 25 ~~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 25 SRQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HHCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 34567889999999999999999999888777765
No 317
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=26.48 E-value=1.3e+02 Score=16.86 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.||.+.+..+|...|..+.+..+..+.+.+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999999988888888887774
No 318
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=26.40 E-value=60 Score=15.81 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHh
Q psy3155 108 LNPEDLDGIIQE 119 (131)
Q Consensus 108 ~~~~e~~~l~~~ 119 (131)
++++|++.++.-
T Consensus 17 ft~~El~~i~~F 28 (64)
T PF09832_consen 17 FTEEELDAILAF 28 (64)
T ss_dssp S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 445555544443
No 319
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.28 E-value=39 Score=18.44 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=15.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHH
Q psy3155 88 GNGYITTATLREILAALDDKLNPED 112 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~~~~~~~e 112 (131)
|+..-+.+++...|..+|..+++++
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred CCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 4455677788888888887766654
No 320
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=26.24 E-value=1.3e+02 Score=16.91 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 91 YITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.||.+.+..+|...|..+.+..+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 6999999999999999998888888887774
No 321
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=26.13 E-value=52 Score=14.30 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=14.1
Q ss_pred cccHHHHHHHHHHcCCCC----CHHHHHHHH
Q psy3155 91 YITTATLREILAALDDKL----NPEDLDGII 117 (131)
Q Consensus 91 ~i~~~el~~~l~~~~~~~----~~~e~~~l~ 117 (131)
.++..+|+.+|...|... ...++-+++
T Consensus 3 sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~ 33 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFPSNAKKAELVALF 33 (35)
T ss_dssp T--SHHHHHHHHHHT---SSS--SHHHHHH-
T ss_pred cCcHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 356678999999877543 344554444
No 322
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=25.99 E-value=1.5e+02 Score=17.39 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
++..|++.+|...| .+++|+..+.+.+
T Consensus 99 msd~el~~~l~~~g--~~~EE~rRL~~Al 125 (129)
T PF13543_consen 99 MSDEELKEILNRCG--AREEECRRLCRAL 125 (129)
T ss_pred CCHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55667777777766 5577777776654
No 323
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=25.77 E-value=1.4e+02 Score=17.07 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=17.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy3155 89 NGYITTATLREILAALDDKLNPEDLDGIIQE 119 (131)
Q Consensus 89 ~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~ 119 (131)
.|.++.+++..-+..-+-.+++.++..++..
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~ 56 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNA 56 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4556666665555444555666665555444
No 324
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=25.34 E-value=1.2e+02 Score=18.84 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=20.5
Q ss_pred CCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhc
Q psy3155 86 REGNGYITTATLREILAAL--DDKLNPEDLDGIIQEID 121 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~--~~~~~~~e~~~l~~~~d 121 (131)
++....++.++|.+.++.. +..++++.+..++..+.
T Consensus 149 ~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 186 (190)
T PF01369_consen 149 PNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDSIK 186 (190)
T ss_dssp TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHHHH
T ss_pred hccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Confidence 3334557777777777753 45677777777776654
No 325
>PRK09389 (R)-citramalate synthase; Provisional
Probab=25.29 E-value=1.9e+02 Score=21.20 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhcCC--CCCCceeHhhHHHHHhhhc
Q psy3155 19 LKISTILNTMGQLFDDTELQALIDENDP--DATGKVNFDGFCRIATHFL 65 (131)
Q Consensus 19 ~~l~~~l~~l~~~~~~~~~~~~~~~~d~--~~~~~i~~~ef~~~~~~~~ 65 (131)
.-+...++.+|+.++++++..++..+.. +....++-.++..++....
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 4456677788888888888777776532 2334688888777765543
No 326
>PRK05439 pantothenate kinase; Provisional
Probab=25.26 E-value=2e+02 Score=19.68 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=16.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy3155 87 EGNGYITTATLREILAALDDKLNPEDLDGI 116 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~~~~~~~~e~~~l 116 (131)
+..-.++.+|+.+ ++.++.+++-+|+.++
T Consensus 24 ~~~~~l~~~~~~~-l~~~~~~~~~~~v~~i 52 (311)
T PRK05439 24 STPLTLTEEELER-LRGLNDPISLEEVAEI 52 (311)
T ss_pred cCCCCCCHHHHHH-hhcCCCCCCHHHHHHH
Confidence 3344466666655 5556666666665554
No 327
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=25.25 E-value=58 Score=13.89 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=11.1
Q ss_pred HHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 100 ILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 100 ~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
.|..+| ++.+.+...+...+.
T Consensus 8 ~L~~mG--f~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 8 QLMEMG--FSREQAREALRACNG 28 (37)
T ss_dssp HHHHHT--S-HHHHHHHHHHTTT
T ss_pred HHHHcC--CCHHHHHHHHHHcCC
Confidence 334446 666666666655443
No 328
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=25.17 E-value=91 Score=14.72 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=15.7
Q ss_pred hcCCCCCcccHHHHHHHHHHcC
Q psy3155 8 FDTAKTGFIDTLKISTILNTMG 29 (131)
Q Consensus 8 ~d~~~~g~i~~~~l~~~l~~l~ 29 (131)
|.+++...++.+++...|..+.
T Consensus 24 YnShNT~rL~ve~~k~lLl~L~ 45 (48)
T PF08485_consen 24 YNSHNTERLDVEEMKELLLKLD 45 (48)
T ss_pred cCCCCccccCHHHHHHHHHhCh
Confidence 4566667888888888876653
No 329
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=25.13 E-value=1.6e+02 Score=17.64 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCCcccc
Q psy3155 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130 (131)
Q Consensus 73 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g~i~~ 130 (131)
....+..++.... +.|.+...++...|. +++.-+.++++.+. ..|.|.|
T Consensus 8 ~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~--~~GlV~~ 56 (154)
T COG1321 8 EEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLE--RLGLVEY 56 (154)
T ss_pred HHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHH--HCCCeEE
Confidence 3455666666664 678888888887775 77777888887765 3455544
No 330
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.03 E-value=66 Score=14.48 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=13.8
Q ss_pred CCCCCCcccHHHHHHHHHH
Q psy3155 85 DREGNGYITTATLREILAA 103 (131)
Q Consensus 85 D~~~~g~i~~~el~~~l~~ 103 (131)
+....|-++.++|++.+..
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4456677888888887765
No 331
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=24.69 E-value=1.2e+02 Score=15.84 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHhhcCCC-CCCceeHhhHHHH
Q psy3155 17 DTLKISTILNTMGQLFDDTELQALIDENDPD-ATGKVNFDGFCRI 60 (131)
Q Consensus 17 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~ 60 (131)
+..++...| .|.+.+.+.+...+..++.. --+.++-++++.+
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~ 85 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIEL 85 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHh
Confidence 355666655 37778888888888876432 3346777777665
No 332
>KOG1264|consensus
Probab=24.56 E-value=3.8e+02 Score=21.63 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=53.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHhhc-----CCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhh
Q psy3155 10 TAKTGFIDTLKISTILNTMGQLFDDTELQALIDEN-----DPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLY 84 (131)
Q Consensus 10 ~~~~g~i~~~~l~~~l~~l~~~~~~~~~~~~~~~~-----d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~ 84 (131)
..+.+.++.++|..+.+.+.+.--...+......+ +...--.|.+.+|..++......... .....++...+.|
T Consensus 191 ~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~A-sdr~av~~~~r~F 269 (1267)
T KOG1264|consen 191 GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWA-SDRNAVREFMRKF 269 (1267)
T ss_pred hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhh-hHHHHHHHHHHHH
Confidence 44678999999998888776543333332221111 11112368999999987766544221 1122444443333
Q ss_pred --C---CCCCCcccHHHHHHHHHH
Q psy3155 85 --D---REGNGYITTATLREILAA 103 (131)
Q Consensus 85 --D---~~~~g~i~~~el~~~l~~ 103 (131)
| .-...+++..||.++|-+
T Consensus 270 ~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 270 IDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred HhhhhhhccCcceeHHHHHHHHhh
Confidence 1 124567888888888765
No 333
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=24.35 E-value=2.5e+02 Score=19.55 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHcCCCCCHHHHHHHHhhc--CCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 25 LNTMGQLFDDTELQALIDEN--DPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 25 l~~l~~~~~~~~~~~~~~~~--d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
+..+.+.+..+++..++..+ |.+....+-=++|...+..+ .+ .....-+..+-+....+=+|++=..|+.+-++
T Consensus 35 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l-~~---e~r~~FidFLerSctaEFSGflLYKEl~rrlk 110 (355)
T PRK13654 35 MAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL-DP---ETRKEFIDFLERSCTAEFSGFLLYKELSRRLK 110 (355)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC-CH---HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcc
Confidence 34556677788888888876 44555556666666543322 11 01122223333444556677777777766654
Q ss_pred HcCCCCCHHHHHHHHHhhccC
Q psy3155 103 ALDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 103 ~~~~~~~~~e~~~l~~~~d~~ 123 (131)
.- ...+.+++..+..|
T Consensus 111 ~~-----nP~lae~F~lMaRD 126 (355)
T PRK13654 111 DR-----NPLLAELFQLMARD 126 (355)
T ss_pred cc-----CcHHHHHHHHHhhh
Confidence 21 23445555544433
No 334
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=76 Score=19.72 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=28.9
Q ss_pred CceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 50 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
..++|++...++..+...... ....+...-.+-+|+=.+|.++++|+.+.-.
T Consensus 19 TsLsF~QIA~FCglHplEvk~-iADGE~aq~IkGldPI~~GQLtreEi~rae~ 70 (230)
T COG3820 19 TSLSFDQIADFCGLHPLEVKG-IADGEVAQGIKGLDPIANGQLTREEIARAEK 70 (230)
T ss_pred ccccHHHHHHHhCcCcceeee-eccchhhccccCCCccccCcccHHHHHhhhc
Confidence 457777776665544221100 0112344456667777778888887766543
No 335
>PLN02859 glutamine-tRNA ligase
Probab=24.33 E-value=3.6e+02 Score=21.35 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
..++..+++.+...+...++..+|...| -+|..+|++++.+.+..+
T Consensus 86 ~~Ql~AA~kYl~~~~~~~~d~~~Fek~C-GVGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 86 PAQLEAAFSFFSSTGPESFDLNKFEEAC-GVGVVVSPEDIEAAVNEV 131 (788)
T ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHhC-CCCEEECHHHHHHHHHHH
Confidence 4678889998866655578877777665 257788999998877654
No 336
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=24.23 E-value=2.5e+02 Score=19.50 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=41.2
Q ss_pred HHHcCCCCCHHHHHHHHhhc--CCCCCCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q psy3155 25 LNTMGQLFDDTELQALIDEN--DPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILA 102 (131)
Q Consensus 25 l~~l~~~~~~~~~~~~~~~~--d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 102 (131)
+..+.+.+..++++.++..+ |.+....+-=++|...+..+... ....-+..+-+....+=+|++=..|+.+-++
T Consensus 31 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e----~r~~FidFLerScTaEFSGflLYKEl~rrlk 106 (351)
T CHL00185 31 MANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEK----TKSLFVEFLERSCTAEFSGFLLYKELSRKLK 106 (351)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc
Confidence 34556677788888888876 44555556666666543322110 1112223333444556677777777766654
No 337
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.13 E-value=72 Score=13.19 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=7.8
Q ss_pred CCcccHHHHHHHH
Q psy3155 89 NGYITTATLREIL 101 (131)
Q Consensus 89 ~g~i~~~el~~~l 101 (131)
.|.||.+|+.+.-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 4667766665543
No 338
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=24.02 E-value=1.3e+02 Score=16.95 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=9.7
Q ss_pred CceeHhhHHHHHhhhc
Q psy3155 50 GKVNFDGFCRIATHFL 65 (131)
Q Consensus 50 ~~i~~~ef~~~~~~~~ 65 (131)
+.+++.+|..+++..+
T Consensus 49 ~~~tv~~f~~~irk~l 64 (112)
T cd01611 49 SDLTVGQFVYIIRKRI 64 (112)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3466677776665543
No 339
>COG1158 Rho Transcription termination factor [Transcription]
Probab=23.90 E-value=1.2e+02 Score=21.30 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=41.9
Q ss_pred ceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCc------ccHHHHHHHHHH--cCCCCCHHH-HHHHHHhhc
Q psy3155 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGY------ITTATLREILAA--LDDKLNPED-LDGIIQEID 121 (131)
Q Consensus 51 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~------i~~~el~~~l~~--~~~~~~~~e-~~~l~~~~d 121 (131)
.+-|+||...-....+- +..-.=+.+|-.+|..++|+ ++.+++..++.- +-.++++.+ +.-++..+.
T Consensus 331 eVIfEEFKGTGNmEl~L----dR~laerRifPAIdi~kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk 406 (422)
T COG1158 331 EVIFEEFKGTGNMELHL----DRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLK 406 (422)
T ss_pred hhhhhhhcCCCceEEEE----hhhhhhcccccceecccCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 45578877554433332 22234467999999999997 788888777654 222344444 344556555
Q ss_pred cCC
Q psy3155 122 TDG 124 (131)
Q Consensus 122 ~~~ 124 (131)
..+
T Consensus 407 ~Tk 409 (422)
T COG1158 407 KTK 409 (422)
T ss_pred ccc
Confidence 443
No 340
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=23.88 E-value=2e+02 Score=18.30 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCC
Q psy3155 76 ELKEAFRLYDREGNGYITTATLREILAALD---DKLNPEDLDGIIQEIDTDGSG 126 (131)
Q Consensus 76 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~e~~~l~~~~d~~~~g 126 (131)
++-+++...-..+.|.|+..|+...+.... ..++++++...++.+..=+.|
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 344444444455667888888888888743 357888888888877655444
No 341
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=23.88 E-value=92 Score=14.33 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=12.4
Q ss_pred cccHHHHHHHHHHcCCC
Q psy3155 15 FIDTLKISTILNTMGQL 31 (131)
Q Consensus 15 ~i~~~~l~~~l~~l~~~ 31 (131)
.++-.|+...|...|++
T Consensus 5 ~LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 5 RLSDAELRAELKQYGLP 21 (44)
T ss_pred HcCHHHHHHHHHHcCCC
Confidence 46677788888887765
No 342
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=23.73 E-value=1.4e+02 Score=16.38 Aligned_cols=11 Identities=9% Similarity=0.455 Sum_probs=5.0
Q ss_pred HhhHHHHHhhh
Q psy3155 54 FDGFCRIATHF 64 (131)
Q Consensus 54 ~~ef~~~~~~~ 64 (131)
|..|+.++...
T Consensus 9 w~~~~~ll~~~ 19 (94)
T TIGR01321 9 WEAFLKLLKKA 19 (94)
T ss_pred HHHHHHHHHHc
Confidence 44444444443
No 343
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=23.67 E-value=1.3e+02 Score=16.04 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=8.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q psy3155 94 TATLREILAALDDKLNPEDLDG 115 (131)
Q Consensus 94 ~~el~~~l~~~~~~~~~~e~~~ 115 (131)
..||...+..-...++..++..
T Consensus 3 k~eli~~ia~~~~~~s~~~~~~ 24 (94)
T PRK00199 3 KSELIERLAARNPHLSAKDVEN 24 (94)
T ss_pred HHHHHHHHHHHcCCCCHHHHHH
Confidence 3444444443222244444433
No 344
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=23.52 E-value=1.1e+02 Score=14.90 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 96 TLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 96 el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
|+.-+.+.+| +|++++.+.+...+
T Consensus 22 ev~ywa~~~g--vt~~~L~~AV~~vG 45 (57)
T PF12244_consen 22 EVRYWAKRFG--VTEEQLREAVRAVG 45 (57)
T ss_pred HHHHHHHHHC--cCHHHHHHHHHHHC
Confidence 3333444444 44555555544443
No 345
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.50 E-value=1.9e+02 Score=17.70 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=11.6
Q ss_pred CCCcccHHHHHHHHHHcC
Q psy3155 88 GNGYITTATLREILAALD 105 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~ 105 (131)
+...|+.+++..+++..|
T Consensus 112 ~~~~V~~~~w~~l~~~~g 129 (172)
T cd04790 112 EQRLVTKEKWVAILKAAG 129 (172)
T ss_pred ccccCCHHHHHHHHHHcC
Confidence 344566777777777666
No 346
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.38 E-value=75 Score=18.58 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=9.4
Q ss_pred CCCCcccHHHHHHHHHHcC
Q psy3155 87 EGNGYITTATLREILAALD 105 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~~ 105 (131)
.+...|...+|+.++..+|
T Consensus 14 GG~nki~MaeLr~~l~~~G 32 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLG 32 (137)
T ss_dssp TTBS---HHHHHHHHHHCT
T ss_pred CCCCcccHHHHHHHHHHcC
Confidence 3444566666666666654
No 347
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=23.36 E-value=53 Score=17.69 Aligned_cols=16 Identities=38% Similarity=0.920 Sum_probs=12.8
Q ss_pred CCCCCCcccHHHHHHH
Q psy3155 85 DREGNGYITTATLREI 100 (131)
Q Consensus 85 D~~~~g~i~~~el~~~ 100 (131)
|.++.|.||...++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 4578899999888876
No 348
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.34 E-value=1.2e+02 Score=15.56 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=8.9
Q ss_pred CCCceeHhhHHHHHh
Q psy3155 48 ATGKVNFDGFCRIAT 62 (131)
Q Consensus 48 ~~~~i~~~ef~~~~~ 62 (131)
..|++.-+||..++.
T Consensus 27 ~~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 27 ASGKLRGEEINSLLE 41 (75)
T ss_pred HcCcccHHHHHHHHH
Confidence 466666666655543
No 349
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=23.26 E-value=1.3e+02 Score=15.96 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHH
Q psy3155 94 TATLREILAALDDKLNPEDLD 114 (131)
Q Consensus 94 ~~el~~~l~~~~~~~~~~e~~ 114 (131)
..||...+..-...++..++.
T Consensus 3 k~eli~~i~~~~~~~s~~~v~ 23 (94)
T TIGR00988 3 KSELIERIATQQSHLPAKDVE 23 (94)
T ss_pred HHHHHHHHHHHcCCCCHHHHH
Confidence 344444444322223444433
No 350
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=22.77 E-value=40 Score=13.38 Aligned_cols=7 Identities=43% Similarity=0.838 Sum_probs=3.1
Q ss_pred CCCcccc
Q psy3155 124 GSGTVDF 130 (131)
Q Consensus 124 ~~g~i~~ 130 (131)
.||.++|
T Consensus 19 ~dgtvsy 25 (27)
T PF04022_consen 19 QDGTVSY 25 (27)
T ss_pred cCceEec
Confidence 3444443
No 351
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=22.64 E-value=1.1e+02 Score=16.33 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=29.1
Q ss_pred CceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCc--ccHHHHHHHHH
Q psy3155 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGY--ITTATLREILA 102 (131)
Q Consensus 50 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--i~~~el~~~l~ 102 (131)
..++|.+.+..+...... ....+|..-|.+++.- =|-+|++.++.
T Consensus 21 ~~L~F~DvL~~I~~vlp~--------aT~tAFeYEDE~gDRITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPE--------ATTTAFEYEDEDGDRITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhccc--------ccccceeeccccCCeeEecchHHHHHHHH
Confidence 358899988888777653 3445788877777642 13445555554
No 352
>KOG0869|consensus
Probab=22.63 E-value=1.9e+02 Score=17.59 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCC
Q psy3155 86 REGNGYITTATLREILAALDDK 107 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~~~~ 107 (131)
..+..+|+.+++..+|..+|..
T Consensus 81 ~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 81 REKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred HHhcCcccHHHHHHHHHHcCcH
Confidence 4677889999999999999964
No 353
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=22.41 E-value=78 Score=22.92 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCcccHHHHH-HHHHHcCCCCCHHHHHHHHHhhccC
Q psy3155 87 EGNGYITTATLR-EILAALDDKLNPEDLDGIIQEIDTD 123 (131)
Q Consensus 87 ~~~g~i~~~el~-~~l~~~~~~~~~~e~~~l~~~~d~~ 123 (131)
+=+|+|+..++. .+...+|..-+..-+..|+..++.|
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rN 418 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRN 418 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccC
Confidence 447899998888 7888889988888899999888755
No 354
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=22.36 E-value=85 Score=17.39 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=11.1
Q ss_pred CCCcccHHHHHHHHHHcC
Q psy3155 88 GNGYITTATLREILAALD 105 (131)
Q Consensus 88 ~~g~i~~~el~~~l~~~~ 105 (131)
.+|.|++++|.+.+.++.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 358899999999999864
No 355
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=22.13 E-value=43 Score=17.03 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=16.0
Q ss_pred CCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhh
Q psy3155 89 NGYITTATLREILAA-LDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 89 ~g~i~~~el~~~l~~-~~~~~~~~e~~~l~~~~ 120 (131)
...++..++..++.. .|.+++..++..+.+.+
T Consensus 11 ~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l 43 (76)
T PF08479_consen 11 NTLLPEEELQAILAPYIGRCLTLADLQQLADAL 43 (76)
T ss_dssp -TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 334455555555555 45556666665555443
No 356
>KOG0871|consensus
Probab=21.77 E-value=1.9e+02 Score=17.42 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=17.0
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCC
Q psy3155 82 RLYDREGNGYITTATLREILAALDDK 107 (131)
Q Consensus 82 ~~~D~~~~g~i~~~el~~~l~~~~~~ 107 (131)
+..+.+...+|..+.+..+|..+|+.
T Consensus 57 eic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 57 EICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHhHHhcccCCHHHHHHHHHHcchH
Confidence 34445556677777777777777754
No 357
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.74 E-value=1.8e+02 Score=18.39 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCC
Q psy3155 92 ITTATLREILAALDDKLNPEDLDGIIQEIDTDGSG 126 (131)
Q Consensus 92 i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~~~~g 126 (131)
-..+|+..+++..| +++++.+.+.+.+-.+++.
T Consensus 80 ~e~~el~~iy~~~G--l~~~~a~~i~~~l~~~~~~ 112 (213)
T PF01988_consen 80 EEKEELVEIYRAKG--LSEEDAEEIAEELSKDKDA 112 (213)
T ss_pred hHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCchH
Confidence 34557777777776 7777777777776555443
No 358
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=21.69 E-value=86 Score=17.95 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.2
Q ss_pred CCCCcccHHHHHHHHHHc
Q psy3155 87 EGNGYITTATLREILAAL 104 (131)
Q Consensus 87 ~~~g~i~~~el~~~l~~~ 104 (131)
|-+|.|+.++|.+++..+
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 557889999998888763
No 359
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.65 E-value=3e+02 Score=19.33 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcC---CCCCCceeHhhHHHHHhhh
Q psy3155 20 KISTILNTMGQLFDDTELQALIDEND---PDATGKVNFDGFCRIATHF 64 (131)
Q Consensus 20 ~l~~~l~~l~~~~~~~~~~~~~~~~d---~~~~~~i~~~ef~~~~~~~ 64 (131)
-+...+..+|+.++++++..++..+- ......++-+|+..++...
T Consensus 324 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~ 371 (378)
T PRK11858 324 ALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDV 371 (378)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34555666677666666655555431 1122456666666655543
No 360
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=21.63 E-value=2.2e+02 Score=17.77 Aligned_cols=48 Identities=15% Similarity=0.403 Sum_probs=24.9
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHH---HHHHhhcCCCCCCceeHhhHHHH
Q psy3155 10 TAKTGFIDTLKISTILNTMGQLFDDTEL---QALIDENDPDATGKVNFDGFCRI 60 (131)
Q Consensus 10 ~~~~g~i~~~~l~~~l~~l~~~~~~~~~---~~~~~~~d~~~~~~i~~~ef~~~ 60 (131)
-|.+|+++. .+..+...++ .+.+++ ..+.+.++.-|-|.-+..|.+.+
T Consensus 45 LD~~GyL~~-~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLll 95 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLL 95 (194)
T ss_dssp BTTTSTCSS--HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHH
T ss_pred CCCCCccCC-CHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHH
Confidence 356777763 3444555555 444444 34455667777777777776543
No 361
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.42 E-value=2.2e+02 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=10.8
Q ss_pred ccHHHHHHHHHHcCC
Q psy3155 92 ITTATLREILAALDD 106 (131)
Q Consensus 92 i~~~el~~~l~~~~~ 106 (131)
++..-+..+|+.+|+
T Consensus 41 vS~~tV~~lL~~lGY 55 (311)
T PF07592_consen 41 VSARTVARLLNRLGY 55 (311)
T ss_pred ccHHHHHHHHHHcCc
Confidence 777777777777665
No 362
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.30 E-value=1.9e+02 Score=17.04 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhcCCCCCC---ceeHhhHHHHHhhhcccccH-------------HHhHHHHHHHHh
Q psy3155 19 LKISTILNTMGQLFDDTELQALIDENDPDATG---KVNFDGFCRIATHFLEEDDA-------------EAMQEELKEAFR 82 (131)
Q Consensus 19 ~~l~~~l~~l~~~~~~~~~~~~~~~~d~~~~~---~i~~~ef~~~~~~~~~~~~~-------------~~~~~~~~~~f~ 82 (131)
..+..++...+...+.+.+....+.-|..+=. .+....|++.+....+..+. -.....++-+|.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 34555666666666666666555554332211 13334444443322221110 011235555665
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q psy3155 83 LYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121 (131)
Q Consensus 83 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d 121 (131)
.-+ .++..++...+.+++..|+.++|+.-|
T Consensus 99 lK~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 99 LKT---------DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred ccc---------chHHHHHhccCcccccHHHHHHHhCCC
Confidence 442 247778888888888888888887644
No 363
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=21.17 E-value=60 Score=19.58 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=4.7
Q ss_pred HHHHcCCCCCHHHHHH
Q psy3155 100 ILAALDDKLNPEDLDG 115 (131)
Q Consensus 100 ~l~~~~~~~~~~e~~~ 115 (131)
+|+.+|.+++.+.++.
T Consensus 64 vl~kl~~~l~~~~i~~ 79 (158)
T PF06294_consen 64 VLKKLGIKLDKEDIEG 79 (158)
T ss_dssp TTGGGT----HHHHHH
T ss_pred HHHHcCCCCCHHHHHH
Confidence 3333444444444333
No 364
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=21.03 E-value=1.6e+02 Score=16.08 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy3155 57 FCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103 (131)
Q Consensus 57 f~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 103 (131)
|+..+..+....+.+.....++.+...+ -+|.|+.+||..-+..
T Consensus 8 FL~tLi~ls~~~~qpe~~~~Vr~LV~~L---~~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 8 FLTTLIQLSNDISQPEVAERVRTLVLGL---VNGTITAEEFTSRLQE 51 (92)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Confidence 4444444433322123444555544433 1355777777666655
No 365
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=20.86 E-value=2.3e+02 Score=17.70 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCCCC--ceeHhhHHHHHhhhcc-cccHHHhHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC
Q psy3155 37 LQALIDENDPDATG--KVNFDGFCRIATHFLE-EDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDK 107 (131)
Q Consensus 37 ~~~~~~~~d~~~~~--~i~~~ef~~~~~~~~~-~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~ 107 (131)
+..+|.++-. ..| .++.+.|...+..... .. +.-+.....+=..+-+.....|+..+|..++..+|..
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~--q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPS--QSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TT--S-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhcccc--ccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 3444444422 344 7888888877665542 11 1223333333345556668899999999999999953
No 366
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.72 E-value=1.6e+02 Score=15.76 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHhh
Q psy3155 108 LNPEDLDGIIQEI 120 (131)
Q Consensus 108 ~~~~e~~~l~~~~ 120 (131)
++++++..+++.+
T Consensus 48 mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 48 MTPEELAAFLRAM 60 (83)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555443
No 367
>PF09570 RE_SinI: SinI restriction endonuclease; InterPro: IPR019070 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease SinI, which recognises and cleaves the double-stranded sequence G^GWCC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=20.61 E-value=2.5e+02 Score=18.01 Aligned_cols=41 Identities=22% Similarity=0.458 Sum_probs=31.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy3155 76 ELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120 (131)
Q Consensus 76 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~ 120 (131)
.++..|+.+.+ +|.-.++.|-..+. +..++++++..+++.+
T Consensus 177 ~IkKW~R~~sk--~~~TNW~~lp~~~~--~~~LsE~~F~~fV~qY 217 (221)
T PF09570_consen 177 PIKKWFRTFSK--TGETNWDNLPEMMG--SYNLSEEDFKNFVEQY 217 (221)
T ss_pred chHHHHHhhcC--CCccchhhhhhhhc--cCcCCHHHHHHHHHHH
Confidence 46778888844 44457778888777 7789999999888776
No 368
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.29 E-value=1.5e+02 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCCCcccHHHHHHHHHHc
Q psy3155 86 REGNGYITTATLREILAAL 104 (131)
Q Consensus 86 ~~~~g~i~~~el~~~l~~~ 104 (131)
...||+|+..|-..++..+
T Consensus 121 AkaDGhIDe~ERa~I~~~l 139 (225)
T COG2979 121 AKADGHIDEKERARIMQKL 139 (225)
T ss_pred HhhcCCcCHHHHHHHHHHH
Confidence 3568999999988888554
No 369
>KOG3442|consensus
Probab=20.25 E-value=2e+02 Score=16.79 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCceeHhhHHHHHhhhcccccHHHhHHHHHHHHhhhCCCCCCc
Q psy3155 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGY 91 (131)
Q Consensus 49 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 91 (131)
.|.|+..|-..++.... +.+..........+|+.-|+.+-|.
T Consensus 53 ~~~iTlqEa~qILnV~~-~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 53 NGKITLQEAQQILNVKE-PLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccHHHHhhHhCCCC-CCCHHHHHHHHHHHHhccCcccCcc
Confidence 46799999888876553 2222344567788999999885554
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=20.23 E-value=2.1e+02 Score=17.11 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q psy3155 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDT 122 (131)
Q Consensus 74 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~e~~~l~~~~d~ 122 (131)
...+.-+|+.+....+-+++.-.+-.+|+..+.++++....-+++..-.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3567788888855555588988999999998889999998888877643
Done!