RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3155
(131 letters)
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 142 bits (361), Expect = 8e-45
Identities = 43/131 (32%), Positives = 74/131 (56%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF MFD G I T ++ T++ +GQ EL A+I+E D D +G ++F+ F +
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
++ED +EEL FR++D+ +G+I L EIL A + + ED++ ++++
Sbjct: 82 MVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDS 141
Query: 121 DTDGSGTVDFD 131
D + G +DFD
Sbjct: 142 DKNNDGRIDFD 152
Score = 64.5 bits (158), Expect = 2e-14
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E M E K AF ++D +G G I+T L ++ L E+LD II+E+D DGSGT+DF
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 131 D 131
+
Sbjct: 76 E 76
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F++FD GFID ++ IL G+ + +++ L+ ++D + G+++FD F ++
Sbjct: 98 LANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 140 bits (356), Expect = 3e-44
Identities = 40/132 (30%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 1 MRKAFQMFDT-AKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+ AF +F A+ G I T ++ ++ +GQ ELQ +IDE D D +G V+FD F
Sbjct: 20 FKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
+ +++D +EEL + FR++D+ +GYI L+ +L A + + +D++ ++++
Sbjct: 80 MMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKD 139
Query: 120 IDTDGSGTVDFD 131
D + G +D+D
Sbjct: 140 GDKNNDGRIDYD 151
Score = 59.5 bits (145), Expect = 2e-12
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 71 EAMQEELKEAFRLYDREGN-GYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129
E + E K AF ++ G I+T L +++ L PE+L +I E+D DGSGTVD
Sbjct: 14 EEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVD 73
Query: 130 FD 131
FD
Sbjct: 74 FD 75
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+MFD G+ID ++ +L G+ + +++ L+ + D + G++++D F
Sbjct: 97 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 136 bits (344), Expect = 2e-42
Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF+ FD K G+I+ + + TMG + + EL L + + + G V+FD F +
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVEL 72
Query: 61 ATHFLEEDDAEAM-QEELKEAFRLYDREGNGYITTATLREIL-AALDDKLNPEDLDGIIQ 118
L + A+ + +EL++AFR +D G+G I+T+ LRE + A L ++ D++ II+
Sbjct: 73 MGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIR 132
Query: 119 EIDTDGSGTVDFD 131
++D +G G VDF+
Sbjct: 133 DVDLNGDGRVDFE 145
Score = 64.9 bits (159), Expect = 2e-14
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
EEL+EAFR +D++ +GYI L + + +L + Q+I+ + G VDF
Sbjct: 7 PEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDF 66
Query: 131 D 131
D
Sbjct: 67 D 67
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTIL-NTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+R AF+ FDT G I T ++ + +G +++ +I + D + G+V+F+ F R
Sbjct: 90 LRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVR 149
Query: 60 I 60
+
Sbjct: 150 M 150
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 135 bits (342), Expect = 5e-42
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
+AF +FD GF+D ++ + +G E+ LIDE D + + +D F +
Sbjct: 26 YEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVM 85
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
+ + D +E+K AF+L+D + G I+ LR + L + L E+L +I+E D
Sbjct: 86 GEKILKRDPL---DEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFD 142
Query: 122 TDGSGTVDFD 131
DG G ++ +
Sbjct: 143 LDGDGEINEN 152
Score = 63.7 bits (156), Expect = 4e-14
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E ++E+ EAF L+D +G++ L+ + AL +L ++ +I E D++G + +
Sbjct: 19 EEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKY 78
Query: 131 D 131
D
Sbjct: 79 D 79
Score = 52.9 bits (128), Expect = 5e-10
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++AFQ+FD TG I + + +G+ D EL+A+I+E D D G++N + F I
Sbjct: 98 IKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 134 bits (340), Expect = 1e-41
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 1 MRKAFQMFDTA-KTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+ AF+ F+T +G + T +I IL +G + ++ LIDE DP G ++FD F
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI 74
Query: 60 IATHFL-EEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQ 118
I FL EE + E MQ+EL+EAFRLYD+EGNGYI+T +REILA LD+ L+ EDLD +I
Sbjct: 75 IGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMID 134
Query: 119 EIDTDGSGTVDFD 131
EID DGSGTVDF+
Sbjct: 135 EIDADGSGTVDFE 147
Score = 58.7 bits (143), Expect = 3e-12
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 71 EAMQEELKEAFRLYDR-EGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129
+ L+ AFR ++ EG+G ++T + IL L + + +I E D G+G +D
Sbjct: 9 SNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDID 68
Query: 130 FD 131
FD
Sbjct: 69 FD 70
Score = 51.8 bits (125), Expect = 2e-09
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF+++D G+I T + IL + + +L A+IDE D D +G V+F+ F +
Sbjct: 93 LREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 130 bits (329), Expect = 3e-40
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
R+AF +FD TG ID ++ + +G E++ +I E D + TGK+NF F +
Sbjct: 9 REAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVM 68
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
T + E D + EE+ +AF+L+D + G I+ L+ + L + L E+L +I E D
Sbjct: 69 TQKMSEKDTK---EEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEAD 125
Query: 122 TDGSGTVDFD 131
DG G V
Sbjct: 126 RDGDGEVSEQ 135
Score = 63.6 bits (156), Expect = 3e-14
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E ++E++EAF L+D +G G I L+ + AL + E++ +I EID +G+G ++F
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Query: 131 D 131
Sbjct: 62 G 62
Score = 52.1 bits (126), Expect = 1e-09
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ KAF++FD +TG I + + +G+ D ELQ +IDE D D G+V+ F RI
Sbjct: 81 ILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 130 bits (329), Expect = 8e-40
Identities = 49/131 (37%), Positives = 85/131 (64%), Gaps = 3/131 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF +FD G I T ++ T++ ++GQ + ELQ +I+E D D G ++F F +
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 72
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+++ D+E EE++EAFR++D++GNGYI+ A LR ++ L +KL E++D +I+E
Sbjct: 73 MARKMKDTDSE---EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 121 DTDGSGTVDFD 131
D DG G V+++
Sbjct: 130 DIDGDGQVNYE 140
Score = 91.4 bits (228), Expect = 1e-24
Identities = 23/93 (24%), Positives = 46/93 (49%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF++FD G+I ++ ++ +G+ D E+ +I E D D G+VN++ F ++
Sbjct: 86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 145
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
T A A +E ++ R + +
Sbjct: 146 MTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
Score = 64.5 bits (158), Expect = 3e-14
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 67 EDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSG 126
+ E E KEAF L+D++G+G ITT L ++ +L +L +I E+D DG+G
Sbjct: 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG 62
Query: 127 TVDFD 131
T+DF
Sbjct: 63 TIDFP 67
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 129 bits (327), Expect = 1e-39
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
R+AF +FDT +G ID ++ + +G E++ +I E D D +G ++F+ F +
Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMM 90
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
T + E D+ EE+ +AFRL+D + +G IT LR + L + L E+L +I E D
Sbjct: 91 TAKMGERDSR---EEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEAD 147
Query: 122 TDGSGTVDFD 131
+ +D D
Sbjct: 148 RNDDNEIDED 157
Score = 64.1 bits (157), Expect = 4e-14
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E ++E++EAF L+D +G+G I L+ + AL + E++ +I EID DGSGT+DF
Sbjct: 24 EEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDF 83
Query: 131 D 131
+
Sbjct: 84 E 84
Score = 52.6 bits (127), Expect = 1e-09
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ KAF++FD +G I + + +G+ + ELQ +I E D + +++ D F RI
Sbjct: 103 ILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI 162
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 128 bits (325), Expect = 1e-39
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF++FD+ +TGFI + T+L G + + +E D GK+ F F +
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSM 67
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+++ +E + L++AFR +D EG GYI A L++ L L D+L P + +
Sbjct: 68 MGRRMKQTTSE---DILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124
Query: 121 DTDGSGTVDFD 131
+T+ G + +D
Sbjct: 125 ETE-KGQIRYD 134
Score = 64.4 bits (158), Expect = 2e-14
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129
+ E KEAF L+D E G+IT L+ +L ++ P + + E D G+G +
Sbjct: 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ 60
Query: 130 FD 131
F
Sbjct: 61 FP 62
Score = 50.2 bits (121), Expect = 5e-09
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF+ FD TG+I + L +G E + + + G++ +D F
Sbjct: 81 LRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFINT 139
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 128 bits (324), Expect = 2e-39
Identities = 48/131 (36%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF +FD G I T ++ T++ ++GQ + ELQ +I+E D D G ++F F +
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSL 71
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
++E D+E EEL EAF+++DR+GNG I+ A LR ++ L +KL +++D +I+E
Sbjct: 72 MARKMKEQDSE---EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128
Query: 121 DTDGSGTVDFD 131
D DG G ++++
Sbjct: 129 DIDGDGHINYE 139
Score = 63.7 bits (156), Expect = 4e-14
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E E KEAF L+D++G+G ITT L ++ +L +L +I E+D DG+GT+DF
Sbjct: 6 EEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
Query: 131 D 131
Sbjct: 66 P 66
Score = 52.5 bits (127), Expect = 6e-10
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ +AF++FD G I ++ ++ +G+ D E+ +I E D D G +N++ F R+
Sbjct: 85 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 135 bits (342), Expect = 3e-39
Identities = 49/131 (37%), Positives = 85/131 (64%), Gaps = 3/131 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF +FD G I T ++ T++ ++GQ + ELQ +I+E D D G ++F F +
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 373
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+++ D+E EE++EAFR++D++GNGYI+ A LR ++ L +KL E++D +I+E
Sbjct: 374 MARKMKDTDSE---EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430
Query: 121 DTDGSGTVDFD 131
D DG G V+++
Sbjct: 431 DIDGDGQVNYE 441
Score = 83.0 bits (205), Expect = 6e-20
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
+ +F + ++ E L++ + ++F I
Sbjct: 250 IQERTIFFKDDGNYKTRAEV------------KFEGDTLVNRIELK---GIDFKEDGNIL 294
Query: 62 THFLEEDDAEAMQEE----LKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
H LE + + + EE KEAF L+D++G+G ITT L ++ +L +L +I
Sbjct: 295 GHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 354
Query: 118 QEIDTDGSGTVDFD 131
E+D DG+GT+DF
Sbjct: 355 NEVDADGNGTIDFP 368
Score = 56.4 bits (136), Expect = 1e-10
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF++FD G+I ++ ++ +G+ D E+ +I E D D G+VN++ F ++
Sbjct: 387 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446
Score = 44.1 bits (104), Expect = 3e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 57 FCRIATHFLEED-DAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDG 115
F R H + D AM E + ++ ++ Y T A ++ L +++ +L G
Sbjct: 228 FSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRI---ELKG 284
Query: 116 IIQEIDTDGSGTVDFD 131
ID G +
Sbjct: 285 ----IDFKEDGNILGH 296
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 126 bits (318), Expect = 2e-38
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALID-ENDPDATGKVNFDGFCR 59
+ F +FD G I + L +G + +Q +I+ ++ + D
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 60 IATHFLEEDDAEAM--QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
+ +E DA E+ +AF+++D+E G ++ LR +L L +KL ++D ++
Sbjct: 66 LIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELL 125
Query: 118 QEIDTDGSGTVDFD 131
+ ++ D +G +D+
Sbjct: 126 KGVEVDSNGEIDYK 139
Score = 56.8 bits (138), Expect = 1e-11
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQ-EIDTDGSGTVDFD 131
K+ F L+D++G G I +L + L A+ + + II + + ++ D
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
KAFQ+FD TG + + +L +G+ D E+ L+ + D+ G++++ F
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 120 bits (303), Expect = 3e-36
Identities = 38/130 (29%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
++AF +FD +G I +++T++ ++G + E+ L++E D D + F F +
Sbjct: 14 KEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALM 73
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
+ L+ +D+E +EL EAF+++D+ G+G I+ A L+ +L ++ +KL ++D +++E+
Sbjct: 74 SRQLKCNDSE---QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130
Query: 122 TDGSGTVDFD 131
DGSG ++
Sbjct: 131 -DGSGEINIK 139
Score = 64.0 bits (157), Expect = 2e-14
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E E KEAF L+D++ +G I+ + L ++ +L + ++ ++ EID DG+ ++F
Sbjct: 7 EEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEF 66
Query: 131 D 131
Sbjct: 67 S 67
Score = 49.0 bits (118), Expect = 1e-08
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ +AF++FD G I ++ +L ++G+ D E+ ++ E D +G++N F +
Sbjct: 86 LLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAAL 144
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 118 bits (299), Expect = 1e-35
Identities = 30/131 (22%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++ FQ+FD G + ++ + L ++G+ + EL + + + + + F +
Sbjct: 7 IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAK---EFDLATFKTV 63
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
++ + +E+ +AFR D+EGNG I A LR++L L D L +++ +++E+
Sbjct: 64 YRKPIKTPTEQ--SKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEV 121
Query: 121 DTDGSGTVDFD 131
G G ++++
Sbjct: 122 SVSGDGAINYE 132
Score = 56.8 bits (138), Expect = 2e-11
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 72 AMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
A ++++E F+++D++ +G ++ L L +L +L+ I +++ F
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATF 60
Score = 52.5 bits (127), Expect = 8e-10
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
M AF+ D G I ++ +L +G +E++ L+ E G +N++ F +
Sbjct: 78 MLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDM 137
Query: 61 ATH 63
Sbjct: 138 LVT 140
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 113 bits (285), Expect = 2e-33
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 2 RKAFQMFDTAK--TGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+ F++FD G +D K+ + +G + ++ A + + F+ F
Sbjct: 12 KDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFA-VGGTHKMGEKSLPFEEFLP 70
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
++ + + EAF+ +DREG G+I+ A LR +L AL ++L+ ED+D II+
Sbjct: 71 AYEGLMDCEQGT--FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
Query: 120 ID--TDGSGTVDFD 131
D D G V ++
Sbjct: 129 TDLQEDLEGNVKYE 142
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 71 EAMQEELKEAFRLYD--REGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTV 128
+ ++LK+ F L+D +G + L ++ L ED+ + G ++
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVG-GTHKMGEKSL 63
Query: 129 DFD 131
F+
Sbjct: 64 PFE 66
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEND--PDATGKVNFDGFC 58
+AF+ FD GFI ++ +L +G+ D ++ +I D D G V ++ F
Sbjct: 86 YMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFV 145
Query: 59 RI 60
+
Sbjct: 146 KK 147
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 112 bits (284), Expect = 2e-33
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF M D + GFID + +L +MG+ D L+ ++ E G +NF F +
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPINFTMFLTM 64
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
L D E + ++ AF +D E +G+I LRE+L + D+ E++D + +E
Sbjct: 65 FGEKLNGTDPE---DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121
Query: 121 DTDGSGTVDFD 131
D G ++
Sbjct: 122 PIDKKGNFNYV 132
Score = 57.9 bits (141), Expect = 5e-12
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R AF FD +GFI + +L TMG F D E+ + E D G N+ F RI
Sbjct: 78 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137
Query: 61 ATH 63
H
Sbjct: 138 LKH 140
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
++ +E KEAF + D+ +G+I L ++LA++ E L + + ++ G ++F
Sbjct: 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYL----EGMMSEAPGPINF 58
Query: 131 D 131
Sbjct: 59 T 59
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 114 bits (287), Expect = 2e-33
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AFQ+ D K GFI I +++G+L + EL +++ E G +NF F I
Sbjct: 59 FKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP----GPINFTMFLTI 114
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+ D E + + AF L+D EG+G TL+ L +K + +++D + E
Sbjct: 115 FGDRIAGTDEE---DVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEA 170
Query: 121 DTDGSGTVDFD 131
DG+G +D
Sbjct: 171 PIDGNGLIDIK 181
Score = 60.4 bits (147), Expect = 2e-12
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF +FD G + L T G+ F E+ + E D G ++ F +I
Sbjct: 128 IVNAFNLFDE-GDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQI 186
Query: 61 ATHFLEEDDA 70
T +E+ A
Sbjct: 187 LTKGAKEEGA 196
Score = 52.7 bits (127), Expect = 1e-09
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ +E KEAF+L D++ +G+I+ +R +L ++LD ++ E G ++F
Sbjct: 53 QHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINF 108
Query: 131 D 131
Sbjct: 109 T 109
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 112 bits (284), Expect = 3e-33
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
M++AF M D + GF+ I I +G+ DD EL A++ E G +NF F I
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSI 75
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+ L D+E E ++ AF ++D + + ++++L + D N +++ +E
Sbjct: 76 FSDKLSGTDSE---ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 132
Query: 121 DTDGSGTVDFD 131
+G G D+
Sbjct: 133 PVEG-GKFDYV 142
Score = 55.6 bits (135), Expect = 6e-11
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R AF MFD +T ++ I +L MG F+ E++ E + GK ++ F +
Sbjct: 89 IRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTAM 147
Query: 61 ATHFLEED 68
EE+
Sbjct: 148 IKGSGEEE 155
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ +E+KEAF + D + +G+++ ++ I L + ++L +++E G ++F
Sbjct: 14 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE----APGPLNF 69
Query: 131 D 131
Sbjct: 70 T 70
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 109 bits (276), Expect = 4e-32
Identities = 31/132 (23%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDA--TGKVNFDGFCR 59
++AF++FD G I + ++ +GQ + E+ ++ D + +V+F+ F
Sbjct: 13 KEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLP 72
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
+ + + E+ E FR++D+EGNG + A LR +L L +K+ E+++ ++
Sbjct: 73 MLQAVAKNRG-QGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG 131
Query: 120 IDTDGSGTVDFD 131
D +G ++++
Sbjct: 132 -HEDSNGCINYE 142
Score = 55.7 bits (135), Expect = 4e-11
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTD--GSGTV 128
+ EE KEAF L+DR G+G I + +++ AL ++ ++ +D S V
Sbjct: 6 KDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRV 65
Query: 129 DFD 131
DF+
Sbjct: 66 DFE 68
Score = 48.0 bits (115), Expect = 4e-08
Identities = 12/60 (20%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F++FD G + ++ +L T+G+ + E++ ++ D+ G +N++ F +
Sbjct: 89 YLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKH 147
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 109 bits (275), Expect = 5e-32
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDA--TGKVNFDGFCR 59
++AF +FD I ++ I +GQ + E+ ++ + + F+ F
Sbjct: 11 KEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
+ D + E+ E R++D+EGNG + A LR +LA L +K+ E+++ +++
Sbjct: 71 MLQAAANNKD-QGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129
Query: 120 IDTDGSGTVDFD 131
+ D +G ++++
Sbjct: 130 QE-DSNGCINYE 140
Score = 57.5 bits (140), Expect = 8e-12
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTD--GSGTV 128
+A ++ KEAF L+DR G+ IT + + +I AL +++ I+ + + +
Sbjct: 4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 63
Query: 129 DFD 131
F+
Sbjct: 64 TFE 66
Score = 47.1 bits (113), Expect = 7e-08
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ ++FD G + ++ +L T+G+ + E++ L+ D+ G +N++ F +
Sbjct: 87 FVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKH 145
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 110 bits (278), Expect = 5e-32
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++ F+M DT +G I ++ L +G ++E++ L+D D D +G +++ F
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
H + + +E L AF +D++G+GYIT +++ L+ +D +I+EI
Sbjct: 72 TVHLNKLER----EENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEI 125
Query: 121 DTDGSGTVDFD 131
D D G +D+
Sbjct: 126 DQDNDGQIDYG 136
Score = 66.5 bits (163), Expect = 8e-15
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF FD +G+I +I G DD + +I E D D G++++ F +
Sbjct: 84 LVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYGEFAAM 141
Query: 61 ATHFLEEDDAE----AMQEELKEAFRLYDREGNGYIT 93
L++A L D N I
Sbjct: 142 MRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
Score = 63.0 bits (154), Expect = 1e-13
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E LKE F++ D + +G IT L++ L + +L ++ ++ D D SGT+D+
Sbjct: 6 EEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 65
Query: 131 D 131
Sbjct: 66 G 66
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 108 bits (273), Expect = 8e-32
Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
F+ D G + ++ ++ + ++ LQ + D D G+++ + F +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
+D ++ + LK ++L D +G+G +T + E + + + D
Sbjct: 63 GSIQGQDLSD-DKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKAD 117
Query: 122 TDGSGTVDFD 131
+G G + +
Sbjct: 118 ANGDGYITLE 127
Score = 61.4 bits (150), Expect = 2e-13
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 77 LKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ F+ D G+G ++ ++ ++ N + L I + ID DG+G +D +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 42.1 bits (100), Expect = 4e-06
Identities = 6/60 (10%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ +++ D G + ++++ G ++ + + D + G + + F
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFLEF 132
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 109 bits (274), Expect = 1e-31
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 2 RKAFQMFDTAK--TGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
R+ F +FD G +D K+ +L +G + ++ +
Sbjct: 12 REVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLEEILP 70
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
I +D +E EAF+ +DREG G I++A +R +L L +++ + + I
Sbjct: 71 IYEEMSSKDTGT-AADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTF 129
Query: 120 IDT--DGSGTVDFD 131
D D G + ++
Sbjct: 130 CDIREDIDGNIKYE 143
Score = 49.9 bits (120), Expect = 7e-09
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 71 EAMQEELKEAFRLYD--REGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTV 128
+ EE++E F L+D +G + A + ++L L + G
Sbjct: 5 KDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAY 63
Query: 129 DFD 131
+
Sbjct: 64 KLE 66
Score = 47.2 bits (113), Expect = 9e-08
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDEND--PDATGKVNFDGFC 58
+AF+ FD G I + +I +L +G+ + + + D D G + ++
Sbjct: 87 FMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLM 146
Query: 59 RIATH--FLEEDD 69
+ F ++ D
Sbjct: 147 KKVMAGPFPDKSD 159
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 109 bits (276), Expect = 1e-31
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R F D +G + + +I L +G ++ ++ + D +A+G++++ F
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAA 118
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA--LDDKLNPEDLDGIIQ 118
+E F+ +D +GNG I+ L+ I +++ L + +D ++Q
Sbjct: 119 TIDKQTYLK----KEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQ 174
Query: 119 EIDTDGSGTVDFD 131
E+D +G G +DF
Sbjct: 175 EVDLNGDGEIDFH 187
Score = 64.5 bits (158), Expect = 5e-14
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
IA H + + L+ F D + +G +++ + + L + + P D+ ++++
Sbjct: 47 IAKHLCDVE-----INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRD 101
Query: 120 IDTDGSGTVDFD 131
ID++ SG + +
Sbjct: 102 IDSNASGQIHYT 113
Score = 49.5 bits (119), Expect = 2e-08
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 1 MRKAFQMFDTAKTGFIDT--LKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58
F+ FD G I LK + + D + +L+ E D + G+++F F
Sbjct: 131 CLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFM 190
Query: 59 RI 60
+
Sbjct: 191 LM 192
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 106 bits (268), Expect = 9e-31
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++ F M D K+G I ++ L +G ++E+ L+ D D +G +++ F
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAA 88
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
H + + ++ L AF +D++G+GYIT L++ + ++ +++++
Sbjct: 89 TLHLNKIER----EDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDV 142
Query: 121 DTDGSGTVDFD 131
D D G +D++
Sbjct: 143 DQDNDGRIDYN 153
Score = 65.2 bits (160), Expect = 2e-14
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 57 FCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGI 116
F ++A + E +E LKE F + D + +G IT L+ L + L ++ +
Sbjct: 9 FKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDL 68
Query: 117 IQEIDTDGSGTVDFD 131
+Q D D SGT+D+
Sbjct: 69 MQAADVDNSGTIDYK 83
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF FD +G+I ++ G +D ++ L+ + D D G+++++ F +
Sbjct: 101 LFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYNEFVAM 158
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 106 bits (267), Expect = 9e-31
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
++AF M D + GFI + + +++G++ D EL A++ E G++NF F +
Sbjct: 19 KEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLF 74
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
+ D E + L+ AF ++D +G G+I L+++L + D + E++ + ++
Sbjct: 75 GEKVSGTDPE---DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAP 131
Query: 122 TDGSGTVDFD 131
+ +++
Sbjct: 132 LK-NKQFNYN 140
Score = 54.8 bits (133), Expect = 9e-11
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R AF MFD GFI + +L MG F E++ + + + N++ I
Sbjct: 87 LRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI 145
Query: 61 ATHFLEED 68
+ED
Sbjct: 146 KGKAEDED 153
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ +ELKEAF + D++ +G+I L+++ ++L ++L+ +++E G ++F
Sbjct: 12 QRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNF 67
Query: 131 D 131
Sbjct: 68 T 68
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 107 bits (270), Expect = 9e-31
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + F+ DT +G I +++ L++ G F + L+ D + +G++ FD F +
Sbjct: 29 LMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDL 88
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
++E FR D G+G + + +R L + +++ + ++++
Sbjct: 89 HHF----------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKF 138
Query: 121 DTDGSGTVDFD 131
D G++ FD
Sbjct: 139 DRQRRGSLGFD 149
Score = 75.4 bits (186), Expect = 3e-18
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
MR+ F+ D++ G +D+ ++ L + G + QAL+ + D G + FD + +
Sbjct: 95 MREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVEL 154
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ ++ F YDRE G +T
Sbjct: 155 SIF----------VCRVRNVFAFYDRERTGQVT 177
Score = 61.5 bits (150), Expect = 6e-13
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+EL E FR D +G+G I+ L L++ + + ++ D + SG + F
Sbjct: 23 MNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITF 82
Query: 131 D 131
D
Sbjct: 83 D 83
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 106 bits (268), Expect = 1e-30
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF + D G ID + MG+L +D +A+G +NF F +
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVK---NEELDAMIKEASGPINFTVFLTM 83
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
L+ D E + + AF++ D +G G I + L E+L + PE++ +
Sbjct: 84 FGEKLKGADPE---DVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140
Query: 121 DTDGSGTVDFD 131
D +G VD+
Sbjct: 141 PPDVAGNVDYK 151
Score = 60.7 bits (148), Expect = 9e-13
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF++ D G I + +L T G F E++ + PD G V++ C +
Sbjct: 97 IMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYV 156
Query: 61 ATHFLEEDD 69
TH + +
Sbjct: 157 ITHGEDAEG 165
Score = 53.0 bits (128), Expect = 6e-10
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E E+ KEAF + D+ +G I LRE AA+ +LN + + + + + SG ++F
Sbjct: 21 ETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAM-GRLNVK--NEELDAMIKEASGPINF 77
Query: 131 D 131
Sbjct: 78 T 78
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 104 bits (262), Expect = 1e-29
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 1 MRKAFQMFDTAKTGFIDT-----LKISTILNTMGQLFDDTELQALI-----DENDPDATG 50
+ F D G I I + + T+ + +
Sbjct: 22 HKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGK 81
Query: 51 KVNFDGFCRIATHFL-------EEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103
++ F F ++ ++E F ++D++G+G IT +
Sbjct: 82 EIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKI 141
Query: 104 LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ ED + + D D +G +D D
Sbjct: 142 SGISPSQEDCEATFRHCDLDNAGDLDVD 169
Score = 52.8 bits (127), Expect = 1e-09
Identities = 16/72 (22%), Positives = 23/72 (31%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
F +FD +G I + G + +A D D G ++ D R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQ 174
Query: 61 ATHFLEEDDAEA 72
F D EA
Sbjct: 175 HLGFWYTLDPEA 186
Score = 48.2 bits (115), Expect = 5e-08
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLR-----EILAALDDKLNPEDL 113
+ A + D + K F D GNG IT + +I A L+
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKR 63
Query: 114 DGIIQEIDTDGSGT-----VDFD 131
+ E G G + F
Sbjct: 64 HQVCVEAFFRGCGMEYGKEIAFP 86
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 101 bits (254), Expect = 7e-29
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AF +FD TG I I +L GQ + T A I E + +V+ + F ++
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQ--NPTL--AEITEIESTLPAEVDMEQFLQV 62
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
D EE + F+++D++ G I LR +L +L +KL+ E++D +++ +
Sbjct: 63 LNRPNGFDMPGD-PEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 121
Query: 121 DTDGSGTVDFD 131
G V++
Sbjct: 122 PVK-DGMVNYH 131
Score = 55.2 bits (134), Expect = 5e-11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 72 AMQ-EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ K+AF L+DR G G I ++ ++L A + I EI++ VD
Sbjct: 1 STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDM 56
Query: 131 D 131
+
Sbjct: 57 E 57
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 98.8 bits (247), Expect = 1e-27
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
K F+ D +G + + ++ +L + +Q +ID D D G+V+F F
Sbjct: 9 GKRFKKLDLDNSGSLSVEE----FMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV 64
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA-----LDDKLNPEDLDGI 116
+ F + D E ++L+ AFR+YD + +GYI+ L ++L L D + +D
Sbjct: 65 SQFSVKGDKE---QKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKT 121
Query: 117 IQEIDTDGSGTVDFD 131
I D DG G + F+
Sbjct: 122 IINADKDGDGRISFE 136
Score = 50.7 bits (122), Expect = 4e-09
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ L + F+ D + +G ++ + + NP + +I DTDG+G VDF
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEFMSLPEL---QQNPL-VQRVIDIFDTDGNGEVDFK 58
Score = 40.3 bits (95), Expect = 2e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALID----ENDPDATGKVNFD 55
+R AF+++D K G+I ++ +L M G DT+LQ ++D D D G+++F+
Sbjct: 77 LRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Query: 56 GFCRI 60
FC +
Sbjct: 137 EFCAV 141
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 99.6 bits (249), Expect = 1e-27
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ F + D G+I ++ L G L+D+ D D +GK+++ F
Sbjct: 54 LKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLLLDQIDSDGSGKIDYTEFIAA 112
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP-----EDLDG 115
A + ++ + + AFR++D + +G ITTA L IL + K N +
Sbjct: 113 ALD--RKQLSK---KLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKR 167
Query: 116 IIQEIDTDGSGTVDFD 131
+I+++D + G +DF
Sbjct: 168 MIRDVDKNNDGKIDFH 183
Score = 62.7 bits (153), Expect = 2e-13
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
IA + D E+LK F + D +G GYIT L++ L KL P + D ++ +
Sbjct: 42 IAQQSNDYD-----VEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL-PYNFDLLLDQ 95
Query: 120 IDTDGSGTVDFD 131
ID+DGSG +D+
Sbjct: 96 IDSDGSGKIDYT 107
Score = 44.9 bits (107), Expect = 9e-07
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQ-----LFDDTELQALIDENDPDATGKVNFD 55
+ AF++FD G I T +++ IL + D ++ +I + D + GK++F
Sbjct: 124 IYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Query: 56 GFCRI 60
F +
Sbjct: 184 EFSEM 188
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 97.7 bits (244), Expect = 3e-27
Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
+ + G I S +G + + + + + ++ +
Sbjct: 18 DVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTYEQYLEYL 73
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEID 121
+ + + D EEL + F +D GY+T + ++ IL D L ++ +
Sbjct: 74 SICVHDKDNV---EELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFS 130
Query: 122 TDGSGTVDFD 131
++ +D+
Sbjct: 131 SE--DNIDYK 138
Score = 49.1 bits (118), Expect = 1e-08
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ K F FD TG++ ++ IL T G D E ++ + +++ FC
Sbjct: 86 LIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE--DNIDYKLFCED 143
Query: 61 ATH 63
Sbjct: 144 ILQ 146
Score = 47.6 bits (114), Expect = 5e-08
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E +E ++ G I+ L + D ++I + +
Sbjct: 11 EEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSID----EKKIKELYGDNLTY 66
Query: 131 D 131
+
Sbjct: 67 E 67
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 98.0 bits (244), Expect = 5e-27
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 17/148 (11%)
Query: 1 MRKAFQMFDTAKTGFIDT-----LKISTILNTMGQLFDDTELQALIDENDPDATG----- 50
+ F D G I ++N +G + + E G
Sbjct: 18 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGV 77
Query: 51 KVNFDGFCRIATHFLEE-------DDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103
+ ++ + + ++ ++ F + D++ NG IT + A
Sbjct: 78 ETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA 137
Query: 104 LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ ED + + D D SG +D D
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVD 165
Score = 50.6 bits (121), Expect = 6e-09
Identities = 12/72 (16%), Positives = 22/72 (30%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
F + D + G I + G + + + D D +G+++ D R
Sbjct: 111 GDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQ 170
Query: 61 ATHFLEEDDAEA 72
F D
Sbjct: 171 HLGFWYTMDPAC 182
Score = 45.2 bits (107), Expect = 7e-07
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 66 EEDDAEAMQEELKEAFRLYDREGNGYITTATL-----REILAALDDKLNPEDLDGIIQEI 120
+ D K F D NG I+ + ++ L E
Sbjct: 7 SDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEA 66
Query: 121 DTDGSGT-----VDFD 131
G+G D+
Sbjct: 67 FFGGAGMKYGVETDWP 82
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 97.3 bits (243), Expect = 6e-27
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCR 59
+ FQ D ++G I ++ L+ F+ ++++I D + VNF F
Sbjct: 9 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 68
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQE 119
+ + + + FR YDR+ +G I L++ L+ +L+ + D +I++
Sbjct: 69 VWKYI----------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRK 118
Query: 120 IDTDGSGTVDFD 131
D G G + FD
Sbjct: 119 FDRQGRGQIAFD 130
Score = 68.4 bits (168), Expect = 1e-15
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+ +D +G ID ++ L+ G D LI + D G++ FD F +
Sbjct: 76 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 135
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ L + FR YD + +G+I
Sbjct: 136 CIVL----------QRLTDIFRRYDTDQDGWIQ 158
Score = 55.3 bits (134), Expect = 1e-10
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAALD-DKLNPEDLDGIIQEIDTDGSGTVDFD 131
Q L F+ D++ +G I+ L++ L+ NP + II D + V+F
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 93.9 bits (234), Expect = 2e-25
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 1 MRKAFQMFDTAKTGFIDT-----------LKISTILNTMGQLFDDTELQALIDENDPDAT 49
+ + F+ D G +D ++ + + E+ ++ D D
Sbjct: 42 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN 101
Query: 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLN 109
G + + F + +E L AF+ +D +G+G IT L + +++
Sbjct: 102 GYIEYSEFVTVCMDKQLLLS----RERLLAAFQQFDSDGSGKITNEELGRLFG--VTEVD 155
Query: 110 PEDLDGIIQEIDTDGSGTVDFD 131
E ++QE D + G VDF+
Sbjct: 156 DETWHQVLQECDKNNDGEVDFE 177
Score = 56.1 bits (136), Expect = 5e-11
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA-----------LDDKL 108
+ + ++ +EL + FR D G+G + L E LD
Sbjct: 29 MGSKLTTLEE----TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQ 84
Query: 109 NPEDLDGIIQEIDTDGSGTVDFD 131
++D I+Q +D D +G +++
Sbjct: 85 IEAEVDHILQSVDFDRNGYIEYS 107
Score = 44.2 bits (105), Expect = 1e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AFQ FD+ +G I ++ + DD ++ E D + G+V+F+ F +
Sbjct: 125 LLAAFQQFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQECDKNNDGEVDFEEFVEM 182
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 92.9 bits (231), Expect = 7e-25
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
F+ D K G++ + L +G L + +I+ PD + +V+F GF R+
Sbjct: 32 HHRFRALDRNKKGYLSRMD----LQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVL 87
Query: 62 THFLEEDDAEA-------------MQEELKEAFRLYDREGNGYITTATLREILAAL-DDK 107
HF +D + + +L AF+LYD + +G I+ + ++L + +
Sbjct: 88 AHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ 147
Query: 108 LNPEDL----DGIIQEIDTDGSGTVDFD 131
+ E L D +QE D DG G V F
Sbjct: 148 VTEEQLENIADRTVQEADEDGDGAVSFV 175
Score = 49.8 bits (119), Expect = 2e-08
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 61 ATHFLEEDDAEAMQ----------EELKEAFRLYDREGNGYITTATLREILAALDDKLNP 110
++H D ++++ L FR DR GY++ L++I A +NP
Sbjct: 5 SSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGAL---AVNP 61
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
D II+ DGS VDF
Sbjct: 62 L-GDRIIESFFPDGSQRVDFP 81
Score = 40.5 bits (95), Expect = 3e-05
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALID----ENDPDATGKVNFD 55
+ AFQ++D + G I ++ +L M G + +L+ + D E D D G V+F
Sbjct: 116 LHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV 175
Query: 56 GFCRIATH 63
F +
Sbjct: 176 EFTKSLEK 183
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 90.0 bits (224), Expect = 5e-24
Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + F DT G + +I T+L ++G ++ ++ D + G + + F
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDRGNITYTEFMAG 98
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+ + LK AF D++ +GYI+ + + ++ D L+ D+D +
Sbjct: 99 CYRWKNIES-----TFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSV 151
Query: 121 DTDGSGTVDFD 131
+ G
Sbjct: 152 HSIKKGIPREH 162
Score = 56.2 bits (136), Expect = 4e-11
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ + E F D NG ++ + +LA++ + D++ I+Q +D + G + +
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASV--GIKKWDINRILQALDINDRGNITYT 93
Score = 38.0 bits (89), Expect = 2e-04
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ AF D + G+I I +++ ++ D+ ++ G +I
Sbjct: 110 LKAAFNKIDKDEDGYISKSDIVSLV--HDKVLDNNDIDNFFLSVHSIKKGIPREHIINKI 167
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 92.2 bits (229), Expect = 1e-23
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+ F + +G + +L + L+ L + D G++++ +
Sbjct: 124 LRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAV 183
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
A L FR D NG ++ RE L D + +
Sbjct: 184 AND----------LAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK-KSVQDALFRYA 232
Query: 121 DTDGSGTVDFD 131
D D S V F
Sbjct: 233 DEDESDDVGFS 243
Score = 89.1 bits (221), Expect = 2e-22
Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 12/132 (9%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+ DT G + + +G + AL D D + V F + +
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFSEYVHL 248
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALD-DKLNPEDLDGIIQE 119
L+ + D + +G ++ ++++L + + +
Sbjct: 249 GLC----------LLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSV 298
Query: 120 IDTDGSGTVDFD 131
+D D S ++ +
Sbjct: 299 VDVDDSKSLSYQ 310
Score = 69.1 bits (169), Expect = 4e-15
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQ---LFDDTELQALIDENDPDATGKVNFDGF 57
+ +D D + + + + L +L+ + + DA+G
Sbjct: 53 QKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRL--- 109
Query: 58 CRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
R + L E+D L++ F G+G + L+++LA D + L +
Sbjct: 110 -RPSKPMLSEED----TNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLF 164
Query: 118 QEIDTDGSGTVDFD 131
++ D G + +
Sbjct: 165 VMVENDTKGRMSYI 178
Score = 46.0 bits (109), Expect = 5e-07
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCR 59
+R + D K+G + ++ +L + + D D + +++ F
Sbjct: 255 LRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVM 314
Query: 60 IATHFLEED 68
+ +D
Sbjct: 315 LVLLMFHDD 323
Score = 31.3 bits (71), Expect = 0.072
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 41 IDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREI 100
+ EN + K++ F E ++E K YD++ E
Sbjct: 17 VHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERAER 76
Query: 101 LAAL---DDKLNPEDLDGIIQEIDTDGSGTVDF 130
D + L ++++++ D SG
Sbjct: 77 EREAARGDAAAEKQRLASLLKDLEDDASGYNRL 109
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 90.7 bits (225), Expect = 2e-23
Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQ------LFDDTELQALIDENDPDATGKVNFD 55
+ + FD +G+++ ++ ++ + Q L E++ +D+ GK+
Sbjct: 19 FEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV 78
Query: 56 GFCRIATHFLEEDDAEAMQ-----EELKEAFRLYDREGNGYITTATLREILAALDDKLNP 110
+ Q EE + +R YD + +G+I T L+ L L +K N
Sbjct: 79 ELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK 138
Query: 111 --------EDLDGIIQEIDTDGSGTVDFD 131
E D +++ D++ G ++
Sbjct: 139 TVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Score = 83.8 bits (207), Expect = 7e-21
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDT--------ELQALIDENDPDATGKV 52
K ++ +DT +GFI+T ++ L + + + T ++ D + GK+
Sbjct: 105 FMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKL 164
Query: 53 NFDGFCRIATH----FLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKL 108
R+ L+ + +E +AF LYD++GNGYI L +L L +K
Sbjct: 165 ELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKN 224
Query: 109 NPEDLDGIIQEI-----DTDGSGTVDFD 131
E I G +
Sbjct: 225 KQELDINNISTYKKNIMALSDGGKLYRT 252
Score = 54.1 bits (130), Expect = 6e-10
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAAL------DDKLNPEDLDGIIQEIDTD 123
+ + E + +D +G+GY+ L+ ++ L ++ + +
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR 70
Query: 124 GSGTVDFD 131
G +
Sbjct: 71 DDGKIGIV 78
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 87.0 bits (216), Expect = 3e-23
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ ++++ E + ++ + ++ ++ EL + F L IT
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFV---SELCKGFSLLADPERHLIT 58
Query: 94 TATLREILAAL-DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+LR L + ++ ED G+++E D DG G ++
Sbjct: 59 AESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Score = 48.5 bits (116), Expect = 2e-08
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMG-QLFDDTELQALIDENDPDATGKVNFDGFCR 59
+ K F + + I + +G + + Q ++ E D D G +N FC
Sbjct: 42 LCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101
Query: 60 I---ATHFLEEDDAEAMQEELKEAFR 82
+ + + ED +++ L +
Sbjct: 102 LMVRLSPEMMEDAETWLEKALTQELC 127
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 88.2 bits (219), Expect = 4e-23
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + F+ D + +D + L +G + D E + + + D + +G ++ + F R
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA-------LDDKLNPEDL 113
+ + + + AF DR G+G +T LR + + + E L
Sbjct: 99 LRPPMSQAR----EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVL 154
Query: 114 DGIIQEID-TDGSGTVDFD 131
+ D ++ G V
Sbjct: 155 RRFLDNFDSSEKDGQVTLA 173
Score = 61.6 bits (150), Expect = 6e-13
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ L FR DR+G+ + R+ LA L L+ + +G+ ++ D +GSGT+D +
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 87.9 bits (218), Expect = 5e-23
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 12/143 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDT---------ELQALIDENDPDATGK 51
M+ Q D GFI I + ++ + E + D+ +
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVR 75
Query: 52 VNFDGFCRIATHFLEEDDAEA---MQEELKEAFRLYDREGNGYITTATLREILAALDDKL 108
++ + AT L + E + + D + +GY++ + L A+ L
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL 135
Query: 109 NPEDLDGIIQEIDTDGSGTVDFD 131
+ +D + +G + D
Sbjct: 136 TDDKAITCFNTLDFNKNGQISRD 158
Score = 47.0 bits (112), Expect = 1e-07
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ DT K G++ + L +G D + + D + G+++ D F
Sbjct: 104 SLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVT 163
Query: 61 ATHFLEEDDAEAM 73
FL + A+
Sbjct: 164 VNDFLFGLEETAL 176
Score = 45.5 bits (108), Expect = 5e-07
Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAAL---------DDKLNPEDLDGIIQEID 121
++K + D G+G+I+ I + + ++ + ++
Sbjct: 10 AYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG 69
Query: 122 TDGSGTVDFD 131
+ +
Sbjct: 70 LAPGVRISVE 79
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 84.6 bits (210), Expect = 8e-23
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP 110
+ + + D +EE++EAFR+ D++GNGYI+ A LR ++ L +KL
Sbjct: 9 HGSSGENLYFQSLMKDTDS----EEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTD 64
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
E++D +I+E D DG G V+++
Sbjct: 65 EEVDEMIREADIDGDGQVNYE 85
Score = 51.9 bits (125), Expect = 4e-10
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF++ D G+I ++ ++ +G+ D E+ +I E D D G+VN++ F ++
Sbjct: 31 IREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90
Query: 61 AT 62
T
Sbjct: 91 MT 92
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 82.9 bits (206), Expect = 2e-22
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVD 129
A A E+L+ AFR +D++G+G+IT LR +A L L E+LD +I+E D D G V+
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 130 FD 131
++
Sbjct: 61 YE 62
Score = 50.2 bits (121), Expect = 1e-09
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ AF+ FD G I ++ + +GQ EL A+I E D D G+VN++ F R+
Sbjct: 8 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARM 67
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 86.8 bits (215), Expect = 2e-22
Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTE---------LQALIDENDPDATGK 51
+ K F FD G ++ ++ + M QL + T+ ++ +
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 52 VNFDGFCRIATHFLEEDDAEA-------MQEELKEAFRLYDREGNGYITTATLREILAAL 104
+ + + F E + + + + D +G+G + L+ ++ A
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
Query: 105 DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
D + E ++ DTD SG ++
Sbjct: 158 D--VPQEAAYTFFEKADTDKSGKLERT 182
Score = 51.7 bits (124), Expect = 3e-09
Identities = 10/101 (9%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 40 LIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLRE 99
+ + + + F ED M L + F +D + +G + +
Sbjct: 1 MTERLNEQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLY 60
Query: 100 ILAALDDKLNPED---------LDGIIQEIDTDGSGTVDFD 131
+ +N D + + + +
Sbjct: 61 WPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
Score = 39.4 bits (92), Expect = 1e-04
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + D G +D ++ T++ ++ D D +GK+ +
Sbjct: 130 SNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTELVHL 187
Query: 61 AT-HFLEEDDAEA 72
++E D +
Sbjct: 188 FRKFWMEPYDPQW 200
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 86.8 bits (215), Expect = 2e-22
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + F D ++G ++ ++ G ++ D D G ++F F +
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
E F + R +G + + L L +N ++ +
Sbjct: 113 YKFM----------ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSL-LLHRL 161
Query: 121 DTDGSGTVDFD 131
G D +
Sbjct: 162 FARGMAFCDLN 172
Score = 54.4 bits (131), Expect = 4e-10
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ + F DR+ +G + L +L+P+ +++ DTD +G + F
Sbjct: 50 YTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFY 107
Score = 45.2 bits (107), Expect = 7e-07
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 16/98 (16%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
F M A++G ++ +I L +G + L + + + I
Sbjct: 119 AYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLH-RLFARGMAFCDLNCWIAI 177
Query: 61 ATHFLEEDDAEAMQEELKEAFRL-----YDREGNGYIT 93
A + + A+++ Y +
Sbjct: 178 C----------AFAAQTRSAYQMIFMNPYYGPMKPFNP 205
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 81.5 bits (202), Expect = 1e-21
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E M E K AF ++D +G G I+T L ++ L E+LD II+E+D DGSGT+DF
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 131 D 131
+
Sbjct: 76 E 76
Score = 57.2 bits (139), Expect = 4e-12
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AF MFD G I T ++ T++ +GQ EL A+I+E D D +G ++F+ F +
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
Query: 61 ATHFLEED 68
++ED
Sbjct: 82 MVRQMKED 89
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 79.6 bits (197), Expect = 7e-21
Identities = 25/58 (43%), Positives = 44/58 (75%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+EELKEAF+++D++ NGYI+ + LR ++ L +KL E+++ +I+E D DG G V+++
Sbjct: 8 EEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE 65
Score = 63.8 bits (156), Expect = 1e-14
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++AF++FD + G+I ++ ++ +G+ D E++ +I E D D G+VN++ F ++
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 70
Query: 61 ATHFLEEDDAEAMQEELKEAFR 82
L+ F
Sbjct: 71 MMTVRGGGGGNG-WSRLRRKFS 91
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 79.4 bits (196), Expect = 5e-20
Identities = 33/149 (22%), Positives = 46/149 (30%), Gaps = 20/149 (13%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTE---------------LQALIDEND 45
+ F FD G ID S M F Q L D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIAD 65
Query: 46 PDATGKVNFDGFCRIATHFLEEDD---AEAMQEELKEAFRLYDREGNGYITTATLREILA 102
D ++ + F A L + AE + L A + D +G+G +T A L
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 103 ALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
A + + +DTDG G V
Sbjct: 126 AFG--VPEDLARQAAAALDTDGDGKVGET 152
Score = 47.8 bits (114), Expect = 5e-08
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKL---------------NPEDLDGIIQ 118
+ + F +D++GNG+I + A+ + G+
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 119 EIDTDGSGTVDFD 131
D DG + +
Sbjct: 63 IADRDGDQRITRE 75
Score = 40.9 bits (96), Expect = 2e-05
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ A + DT G + + L G + + D D GKV
Sbjct: 100 LHAALGVADTDGDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPA 157
Query: 61 ATHF 64
+
Sbjct: 158 FARY 161
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 80.3 bits (198), Expect = 7e-20
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTIL-NTMGQLFDDTELQALID---------ENDPDATG 50
+ F+ FD +TG + ++ + + + ++ + + + G
Sbjct: 50 RIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKG 109
Query: 51 KVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDK-LN 109
+F F D EL F D GN + + + L+
Sbjct: 110 SEDFVEFLEFRLMLCYIYD----FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAK 165
Query: 110 PEDLDGIIQEIDTDGSGTVDFD 131
ED + +E+D +G+G+V FD
Sbjct: 166 VEDPAALFKELDKNGTGSVTFD 187
Score = 43.0 bits (101), Expect = 6e-06
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL-FDDTELQALIDENDPDATGKVNFDGFCR 59
+ F D + +D + + + + AL E D + TG V FD F
Sbjct: 132 LTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAA 191
Query: 60 IATHFLEEDDAEAMQEE 76
A+ + D +
Sbjct: 192 WASAVKLDADGDPDNVP 208
Score = 42.6 bits (100), Expect = 7e-06
Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 10/77 (12%)
Query: 65 LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL----------AALDDKLNPEDLD 114
+ + ++ E F+ +D+ G + + + + D
Sbjct: 38 IPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDK 97
Query: 115 GIIQEIDTDGSGTVDFD 131
+ G+ DF
Sbjct: 98 SRTLGSKLENKGSEDFV 114
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 77.0 bits (190), Expect = 1e-19
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 64 FLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTD 123
+ ++D + E KE + +D GNG I +L+ +L L +L +I E+ +
Sbjct: 21 YSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSG 80
Query: 124 GSGTVDFD 131
T +
Sbjct: 81 SGETFSYP 88
Score = 50.1 bits (120), Expect = 3e-09
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ + FD G ID + + +L +G EL+ LI E + ++ F R+
Sbjct: 34 FKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRM 93
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 77.1 bits (190), Expect = 9e-19
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F D + G + I +I+ + +VNF GF R
Sbjct: 31 LYSRFTSLDKGENGTLSREDFQRIPELAINPL----GDRIINAFFSEGEDQVNFRGFMRT 86
Query: 61 ATHFLEEDDAEAM------------QEELKEAFRLYDREGNGYITTATLREILAAL-DDK 107
HF +D E +L AFRLYD + + I+ L ++L +
Sbjct: 87 LAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN 146
Query: 108 LNPEDL----DGIIQEIDTDGSGTVDFD 131
++ E L D IQE D DG + F
Sbjct: 147 ISDEQLGSIADRTIQEADQDGDSAISFT 174
Score = 43.6 bits (103), Expect = 3e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
L F D+ NG ++ + I + L D II ++G V+F
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRIPELAINPL----GDRIINAFFSEGEDQVNFR 81
Score = 37.4 bits (87), Expect = 4e-04
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM-GQLFDDTELQALID----ENDPDATGKVNFD 55
+ AF+++D K I ++ +L M G D +L ++ D E D D ++F
Sbjct: 115 LHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT 174
Query: 56 GFCRIATH 63
F ++
Sbjct: 175 EFVKVLEK 182
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 73.8 bits (182), Expect = 9e-19
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP------EDLDGIIQEIDTD 123
A ++ EL+ AF+ D G+GY+T L+ + LD E +I+ D +
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61
Query: 124 GSGTVDFD 131
G + +
Sbjct: 62 SDGKISKE 69
Score = 41.8 bits (99), Expect = 3e-06
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMG------QLFDDTELQALIDENDPDATGKVNF 54
+ AF+ D G++ L++ T + T+ + LI D ++ GK++
Sbjct: 9 LEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68
Query: 55 DGFCRIATHFLEE 67
+ F L +
Sbjct: 69 EEFLNANAELLCQ 81
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 74.5 bits (184), Expect = 9e-19
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
M ++ ++ I G ++ F + + D ++KE F + D++
Sbjct: 2 MTKVLKADDINKAISAFKDP--GTFDYKRFFHLVGLKGKTD------AQVKEVFEILDKD 53
Query: 88 GNGYITTATLREILAALD---DKLNPEDLDGIIQEIDTDGSGTVDFD 131
+G+I L+ +L LN + ++ D+D G + D
Sbjct: 54 QSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Score = 44.5 bits (106), Expect = 4e-07
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFI--DTLK-ISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGF 57
+++ F++ D ++GFI + LK + + G+ +DTE +AL+ D D GK+ D F
Sbjct: 43 VKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEF 102
Query: 58 CRI 60
++
Sbjct: 103 AKM 105
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 75.9 bits (187), Expect = 1e-18
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 21/150 (14%)
Query: 1 MRKAFQMFDTAKTGFID----TLKISTILNTMGQLFDDTELQALID-----------END 45
++K F +D G ++ + I G+ E+Q L + E
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG 68
Query: 46 PDATGKVNFDGFCRIATHFLEEDD----AEAMQEELKEAFRLYDREGNGYITTATLREIL 101
+ G + + F R+ + + E + +K + D+ +G I L
Sbjct: 69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128
Query: 102 AALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
AL ++ + ++DT+G+G + D
Sbjct: 129 TALG--MSKAEAAEAFNQVDTNGNGELSLD 156
Score = 44.4 bits (105), Expect = 1e-06
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 15/76 (19%)
Query: 71 EAMQEELKEAFRLYDREGNGYIT----TATLREILAALDDKLNPEDL-----------DG 115
+ LK+ F +D +GNG + + I A ++ D
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 116 IIQEIDTDGSGTVDFD 131
+ +E G++ +
Sbjct: 63 LAKEAGVGSDGSLTEE 78
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR- 59
++ M D G I+ + + L +G E ++ D + G+++ D
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTA 161
Query: 60 IATHFLEEDDAEA 72
+ D E
Sbjct: 162 VRDFHFGRLDVEL 174
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 72.6 bits (179), Expect = 2e-18
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 73 MQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
M ++++ F+ +D G+G I+ + L + L L + +++ ++ EIDTDG G +DF+
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFN 58
Score = 49.5 bits (119), Expect = 2e-09
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
M + F+ FDT G I +++ L T+G D E+Q ++ E D D G ++F+ F
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFISF 63
Query: 61 ATHFLEEDDAEAMQEELKEAF 81
+ +++ + F
Sbjct: 64 CN------ANPGLMKDVAKVF 78
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 72.7 bits (179), Expect = 3e-18
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
Q+E KEAF+L+D++ + +T L ++ AL + + I+++ D D SG D
Sbjct: 10 AEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQ 69
Query: 131 D 131
+
Sbjct: 70 E 70
Score = 54.2 bits (131), Expect = 4e-11
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++AFQ+FD + ++ T++ +G ++ ++ + D D +GK + + F I
Sbjct: 16 YKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTI 75
Query: 61 ATHFLEEDDA 70
+ +E D+
Sbjct: 76 MLEYGQEVDS 85
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 78.2 bits (193), Expect = 3e-18
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 1 MRKAFQMFDTAKTGFI--------------DTLKISTILNTMGQLFDDTELQALIDENDP 46
+ + F+ DT G + S L + ++ +L+ D
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM 392
Query: 47 DATGKVNFDGFCRIATHF--LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104
D +G + + F A L + ++ AF+++D++G+G I+T L ++ +
Sbjct: 393 DGSGSIEYSEFIASAIDRTILLSRER------MERAFKMFDKDGSGKISTKELFKLFSQA 446
Query: 105 DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
D + E+L+ II+++D + G VDF+
Sbjct: 447 DSSIQMEELESIIEQVDNNKDGEVDFN 473
Score = 52.4 bits (126), Expect = 4e-09
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
M +AF+MFD +G I T ++ + + EL+++I++ D + G+V+F+ F +
Sbjct: 419 MERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL--------------D 105
+A+ D+ ++L E FR D +G + L +
Sbjct: 320 MASKLTTLDE----TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNE 375
Query: 106 DKLNPEDLDGIIQEIDTDGSGTVDF 130
+ +D ++ +D DGSG++++
Sbjct: 376 GSTIEDQIDSLMPLLDMDGSGSIEY 400
Score = 25.0 bits (55), Expect = 9.8
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 95 ATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
A L + + L + L I +++DT+ G +D D
Sbjct: 315 AALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRD 351
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 73.0 bits (180), Expect = 4e-18
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
L +++ +D + G N F + + ++K+ F+ D +
Sbjct: 3 AKDLLKADDIKKALDAVKAE--GSFNHKKFFALVGLKAMSAN------DVKKVFKAIDAD 54
Query: 88 GNGYITTATLREILAALD---DKLNPEDLDGIIQEIDTDGSGTVDFD 131
+G+I L+ +L + L + ++ D DG G + D
Sbjct: 55 ASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Score = 44.1 bits (105), Expect = 5e-07
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFI--DTLK-ISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGF 57
++K F+ D +GFI + LK + G+ D E +A + D D GK+ D F
Sbjct: 44 VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEF 103
Query: 58 CRI 60
+
Sbjct: 104 ETL 106
Score = 25.6 bits (57), Expect = 3.8
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 103 ALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
A D L +D+ + + + G+ +
Sbjct: 2 AAKDLLKADDIKKALDAVKAE--GSFNHK 28
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 72.7 bits (179), Expect = 6e-18
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
+ D ++ A + + A N+ F +++K+AF + D++
Sbjct: 3 FSGILADADVAAALKACE--AADSFNYKAFFAKVGL------TAKSADDIKKAFFVIDQD 54
Query: 88 GNGYITTATLREILAALD---DKLNPEDLDGIIQEIDTDGSGTVDFD 131
+G+I L+ L L + ++ D+DG G + D
Sbjct: 55 KSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Score = 40.3 bits (95), Expect = 2e-05
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL---FDDTELQALIDENDPDATGKVNFDGF 57
++KAF + D K+GFI+ ++ L D E +A + D D G + D +
Sbjct: 44 IKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEW 103
Query: 58 CRI 60
+
Sbjct: 104 AAL 106
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 71.8 bits (177), Expect = 6e-18
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 47 DATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDD 106
++G ++ D +A EE+ LKE F++ D + +G IT L++ L +
Sbjct: 1 HSSGHIDDDDK-HMAERLSEEE-----IGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 54
Query: 107 KLNPEDLDGIIQEIDTDGSGTVDFD 131
+L ++ ++ D D SGT+D+
Sbjct: 55 ELMESEIKDLMDAADIDKSGTIDYG 79
Score = 49.1 bits (118), Expect = 4e-09
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++ F+M DT +G I ++ L +G ++E++ L+D D D +G +++ F
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84
Query: 61 ATH 63
H
Sbjct: 85 TVH 87
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 73.4 bits (180), Expect = 7e-18
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 64 FLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTD 123
+ ++D + E K + +D GNG I +L+ +L L +L +I+E+ +
Sbjct: 37 YSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSG 96
Query: 124 GSGTVDFD 131
T +
Sbjct: 97 SEETFSYS 104
Score = 46.8 bits (111), Expect = 1e-07
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + FD G ID + + +L +G EL+ LI E + ++ F R+
Sbjct: 50 FKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRM 109
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 73.4 bits (180), Expect = 8e-18
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 64 FLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTD 123
+ +E++ KE + +D G I +L+ ++ L ++ +I E+
Sbjct: 39 YSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG 98
Query: 124 GSGTVDFD 131
S T+ +
Sbjct: 99 VSDTISYR 106
Score = 52.6 bits (126), Expect = 8e-10
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ + FD G ID + + ++ +G E++ +I E + +++ F +
Sbjct: 52 FKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM 111
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNG 90
LK +++ + N
Sbjct: 112 MLG--------KRSAVLK-LVMMFEGKANE 132
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 71.5 bits (176), Expect = 8e-18
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 67 EDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSG 126
+D + + F+ +D G+G I+++ L + L L + P+++ ++ EIDTDG G
Sbjct: 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDG 61
Query: 127 TVDFD 131
+ FD
Sbjct: 62 FISFD 66
Score = 48.4 bits (116), Expect = 9e-09
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+ FDT G I + ++ L T+G + E++ ++ E D D G ++FD F
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDEFTDF 71
Query: 61 ATHFLEEDDAEAMQEELKEAF 81
A + +++ + F
Sbjct: 72 ARA------NRGLVKDVSKIF 86
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 71.0 bits (175), Expect = 1e-17
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 64 FLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDK-LNPEDLDGIIQEIDT 122
++ +DD +EE+ AF+++D G+G I + I+ + ++ L +++ ++E D
Sbjct: 1 WVRQDD----EEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADE 56
Query: 123 DGSGTVDFD 131
DG+G +D
Sbjct: 57 DGNGVIDIP 65
Score = 46.0 bits (110), Expect = 5e-08
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQ-LFDDTELQALIDENDPDATGKVNFDGFCR 59
+ +AF++FD G ID + I+ +G+ D E++ + E D D G ++ F
Sbjct: 10 ILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69
Query: 60 I 60
+
Sbjct: 70 L 70
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 70.2 bits (173), Expect = 1e-17
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 76 ELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
K F +D+ +G ++ RE+ A ED+ +EID DG+G ++ D
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
Score = 49.8 bits (120), Expect = 1e-09
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ F+ FD K G + + + F ++ +E D D G++N D F
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 71.2 bits (175), Expect = 2e-17
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
+ + +++ A + D A + F +I+ + +LKE FR+ D +
Sbjct: 2 LTDILSPSDIAAALR--DCQAPDSFSPKKFFQISGMSKKSSS------QLKEIFRILDND 53
Query: 88 GNGYITTATLREILAAL---DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+G+I L+ L L + + D DG G + +
Sbjct: 54 QSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Score = 38.4 bits (90), Expect = 7e-05
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM---GQLFDDTELQALIDENDPDATGKVNFDGF 57
+++ F++ D ++GFI+ ++ L ++ +E + + D D GK+ + F
Sbjct: 43 LKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEF 102
Query: 58 CRI 60
+
Sbjct: 103 QEM 105
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 75.9 bits (187), Expect = 2e-17
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 1 MRKAFQMFDTAKTGFI--DTLK------ISTILNTMGQLFDDTELQALIDENDPDATGKV 52
+ F+ D G + L + ++E+ A++ D D G +
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYI 407
Query: 53 NFDGFCRIATHF--LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP 110
++ F +A L D L+ AF+ +D++GNG I+ L + D L
Sbjct: 408 DYSEFVTVAMDRKSLLSKDK------LESAFQKFDQDGNGKISVDELASVFG--LDHLES 459
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
+ +I ID++ G VDF+
Sbjct: 460 KTWKEMISGIDSNNDGDVDFE 480
Score = 50.1 bits (120), Expect = 2e-08
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL--------AALDDKLNPE 111
+A+ +++ +EL + FR D+ G+G + L + A D
Sbjct: 335 MASKLTSQEE----TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIES 390
Query: 112 DLDGIIQEIDTDGSGTVDF 130
++D I+ D D +G +D+
Sbjct: 391 EVDAILGAADFDRNGYIDY 409
Score = 47.0 bits (112), Expect = 3e-07
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ AFQ FD G I +++++ + + +I D + G V+F+ FC++
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVFGLDH--LESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 25.4 bits (56), Expect = 8.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 95 ATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
A L + + L + ++L I + ID +G G +D
Sbjct: 330 AALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQ 366
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 75.1 bits (185), Expect = 4e-17
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 1 MRKAFQMFDTAKTGFI--DTLK---------ISTILNTMGQLFDDTELQALIDENDPDAT 49
+ F D G + L + + + E+ ++D D D
Sbjct: 337 LTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKN 396
Query: 50 GKVNFDGFCRIATHF--LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDK 107
G + + F +A L + L+ AFR++D + +G I++ L I
Sbjct: 397 GYIEYSEFVTVAMDRKTLLSRER------LERAFRMFDSDNSGKISSTELATIFG--VSD 448
Query: 108 LNPEDLDGIIQEIDTDGSGTVDFD 131
++ E ++ E+D + G VDFD
Sbjct: 449 VDSETWKSVLSEVDKNNDGEVDFD 472
Score = 50.1 bits (120), Expect = 2e-08
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL-----------AALDDKL 108
+ + +D+ + EL F D+ G+G + A L E + LD
Sbjct: 324 MGSKLTSQDETK----ELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASA 379
Query: 109 NPEDLDGIIQEIDTDGSGTVDF 130
++D ++ +D D +G +++
Sbjct: 380 VEHEVDQVLDAVDFDKNGYIEY 401
Score = 45.8 bits (109), Expect = 6e-07
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ +AF+MFD+ +G I + +++TI D ++++ E D + G+V+FD F ++
Sbjct: 420 LERAFRMFDSDNSGKISSTELATIFGVSD--VDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
Score = 25.0 bits (55), Expect = 9.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 98 REILAALDDKLNPED----LDGIIQEIDTDGSGTVDFD 131
+ L + KL +D L I ++D +G G +D
Sbjct: 318 QAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRA 355
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 74.7 bits (184), Expect = 5e-17
Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 18/141 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFD--------DTELQALIDENDPDATGKV 52
+ F+ D G +D ++ N + + + E+ ++ E D D G +
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
Query: 53 NFDGFCRIATHF--LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP 110
+ F + L ++ L+ AF L+D + +G IT L + ++
Sbjct: 417 EYSEFISVCMDKQILFSEER------LRRAFNLFDTDKSGKITKEELANLFG--LTSISE 468
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
+ + ++ E D + +DFD
Sbjct: 469 KTWNDVLGEADQNKDNMIDFD 489
Score = 53.2 bits (128), Expect = 2e-09
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL--------DDKLNPE 111
I + ++ ++EL + F+ D+ G+G + L E L + K E
Sbjct: 344 IGSKLTTLEE----RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEE 399
Query: 112 DLDGIIQEIDTDGSGTVDF 130
++D I++E+D D +G +++
Sbjct: 400 EVDNILKEVDFDKNGYIEY 418
Score = 47.8 bits (114), Expect = 2e-07
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+R+AF +FDT K+G I +++ + + ++ E D + ++FD F +
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANLFGLTS--ISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
Score = 25.4 bits (56), Expect = 7.1
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 98 REILAALDDKL-NPEDLDGII---QEIDTDGSGTVDFD 131
+ + + KL E+ + +++D +G G +D
Sbjct: 338 QAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKK 375
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 70.9 bits (174), Expect = 1e-16
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 14/143 (9%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--DDTELQALIDE---------NDPDAT 49
M+ F D K G I + ++ + + L+D
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 50 GKVNFDGFCRIATHFL-EEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKL 108
++ F + + ++ L FR D + I+ L L
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--L 125
Query: 109 NPEDLDGIIQEIDTDGSGTVDFD 131
+ IDT+ G + +
Sbjct: 126 DKTMAPASFDAIDTNNDGLLSLE 148
Score = 38.9 bits (91), Expect = 1e-04
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+ DT + I + +G D T A D D + G ++ + F
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIA 153
Query: 61 ATHFLEEDD 69
+ F D
Sbjct: 154 GSDFFMNDG 162
Score = 37.8 bits (88), Expect = 2e-04
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDD--KLNPEDLDGIIQEI-------- 120
+ +++K F D + +G IT + ++ E ++ +
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFL 61
Query: 121 -DTDGSGTVDFD 131
G +D
Sbjct: 62 TAVAGGKGIDET 73
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 67.9 bits (167), Expect = 2e-16
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E ++E+KEAF L+D G I L+ + AL + ++ ++ E D +G+G + F
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
Query: 131 D 131
D
Sbjct: 63 D 63
Score = 53.3 bits (129), Expect = 8e-11
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+++AF +FDT KTG ID ++ + +G E+ L++E D + G + FD F I
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDI 68
Query: 61 ATHFLEEDD 69
T ++ D
Sbjct: 69 MTEKIKNRD 77
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 70.9 bits (174), Expect = 2e-16
Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
Query: 3 KAFQMFDTAKTGFIDTLKISTILNTMGQL-----FDDTELQALIDENDPDATGKVNFDGF 57
+ + G ID ++ L G F+ + ++ D D +G + F+ F
Sbjct: 36 YGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
Query: 58 CRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
+ ++ F +D + +G + L++ L + +L+P+ ++ I
Sbjct: 96 KELWAVL----------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIA 145
Query: 118 QEIDTDGSGTVDFD 131
+ T+ G + FD
Sbjct: 146 KRYSTN--GKITFD 157
Score = 59.4 bits (144), Expect = 5e-12
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
R+ F FDT ++G +D ++ L TMG + ++ + GK+ FD +
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFDDYIAC 162
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
L ++FR D G +
Sbjct: 163 CVKL----------RALTDSFRRRDTAQQGVVN 185
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 70.6 bits (173), Expect = 2e-16
Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 2 RKAFQMF-DTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ ++ F + +G + + ++A+ D + ++F +
Sbjct: 25 QEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAA 84
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNP---------- 110
L + +LK F++YD++ NG I L +I+ ++
Sbjct: 85 LNLVLRGTL----EHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQ 140
Query: 111 -------EDLDGIIQEIDTDGSGTVDFD 131
E +D I +D +G G + +
Sbjct: 141 GKLLTPEEVVDRIFLLVDENGDGQLSLN 168
Score = 29.4 bits (66), Expect = 0.25
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDAT 49
++ F+++D + G ID ++ I+ ++ +L ++ ++ T
Sbjct: 97 LKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLT 145
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 70.9 bits (173), Expect = 6e-16
Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 25/155 (16%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTE----------LQALIDENDPDATGK 51
+ +Q FD G+I+ ++ M + + ++ + D G+
Sbjct: 14 LQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGR 73
Query: 52 VNFDGFCRIATHFLEEDDAEAMQ-------EELKEAFRLYDREGNGYITTATLREILAAL 104
+ + + E + E + +R YD + +GYI+ A L+ L L
Sbjct: 74 LQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDL 133
Query: 105 DDKLNP--------EDLDGIIQEIDTDGSGTVDFD 131
+ E D +++ D + G +D +
Sbjct: 134 FLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 68.6 bits (167), Expect = 4e-15
Identities = 18/155 (11%), Positives = 51/155 (32%), Gaps = 24/155 (15%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFD--------DTELQALIDENDPDATGKV 52
K ++ +D +G+I ++ L + D A++ D + G++
Sbjct: 106 FMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRL 165
Query: 53 NFDGFCRI--------ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104
+ + RI ++ + + ++ F YD G + + + +
Sbjct: 166 DLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDM 225
Query: 105 DDKLNP--------EDLDGIIQEIDTDGSGTVDFD 131
+ + P + + ++ D + G +
Sbjct: 226 MELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS 260
Score = 46.6 bits (110), Expect = 3e-07
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 70 AEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDG----------IIQE 119
A + ++ +D + NGYI L + + KL P+D +
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 120 IDTDGSGTVDFD 131
D G + +
Sbjct: 66 YDATFDGRLQIE 77
Score = 32.3 bits (73), Expect = 0.024
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFD--------DTELQALIDENDPDATGKV 52
K F +D ++TG ++ ++ + M +L D + L+ D + GK+
Sbjct: 198 FEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKI 257
Query: 53 NFDGFCRI 60
Sbjct: 258 QKSELALC 265
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 67.3 bits (165), Expect = 6e-16
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 27 TMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDR 86
+M L +++ I A + F ++ + D ++K+ F + D+
Sbjct: 1 SMTDLLSAEDIKKAIGA--FTAADSFDHKKFFQMVGLKKKSAD------DVKKVFHILDK 52
Query: 87 EGNGYITTATLREILAALD---DKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ +G+I L IL L+ ++ ++ D DG G + +
Sbjct: 53 DKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Score = 41.5 bits (98), Expect = 5e-06
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFI--DTLK-ISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGF 57
++K F + D K+GFI D L I ++ + E + L+ D D GK+ + F
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 58 CRI 60
+
Sbjct: 103 STL 105
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 65.5 bits (160), Expect = 2e-15
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQ 118
R +F D L+ F D +G + R + L + P D + + Q
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQ 68
Query: 119 EIDTDGSGTVDFD 131
+D D G + F
Sbjct: 69 RLDADRDGAITFQ 81
Score = 39.3 bits (92), Expect = 3e-05
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+R F D ++G ++ + + + + +A+ D D G + F F R
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTELRV--RPADAEAVFQRLDADRDGAITFQEFAR 85
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 66.1 bits (162), Expect = 2e-15
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
D ++ A + F + D ++K+AF + D++ +G+I
Sbjct: 8 DADVAAALAACSAA--DSFKHKEFFAKVGLASKSLD------DVKKAFYVIDQDKSGFIE 59
Query: 94 TATLREILAALD---DKLNPEDLDGIIQEIDTDGSGTVDFD 131
L+ L L + + + D DG G + D
Sbjct: 60 EDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD 100
Score = 42.9 bits (102), Expect = 2e-06
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM---GQLFDDTELQALIDENDPDATGKVNFDGF 57
++KAF + D K+GFI+ ++ L + D E +A + + D D G + D F
Sbjct: 43 VKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEF 102
Query: 58 CRI 60
+
Sbjct: 103 AAM 105
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 66.6 bits (163), Expect = 5e-15
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 5 FQMFD--TAKTGFIDTLKISTILNTMGQ-----LFDDTELQALIDENDPDATGKVNFDGF 57
+ F + G +D ++ L G F + +I D D TGK+ F+ F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 58 CRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
+ KE F D++G+G + LR+ + + +L+P+ L I+
Sbjct: 63 KELWAA----------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIV 112
Query: 118 QEIDTDGSGTVDFD 131
+ + G + FD
Sbjct: 113 KRYSKN--GRIFFD 124
Score = 57.4 bits (139), Expect = 2e-11
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ F D +G ++ ++ + MG L ++ + G++ FD +
Sbjct: 72 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFDDYVAC 129
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
L + FR D G
Sbjct: 130 CVK----------LRALTDFFRKRDHLQQGSAN 152
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 67.5 bits (165), Expect = 5e-15
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFD-DTELQALIDENDPDATGKVNFDGFCR 59
+ F M +G + T+L G + + + + D + G V+F F
Sbjct: 24 WYRTFMMEY--PSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIA 81
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED------L 113
++E M+++LK F+LYD +GNG I L ++ A+ + +
Sbjct: 82 AVNLIMQEK----MEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFI 137
Query: 114 DGIIQEIDTDGSGTVDFD 131
+ + +ID + G + +
Sbjct: 138 NLVFHKIDINNDGELTLE 155
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQA------LIDENDPDATGKVNF 54
++ F+++D G ID ++ + + L L + + D + G++
Sbjct: 95 LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTL 154
Query: 55 DGFCRIAT 62
+ F
Sbjct: 155 EEFINGMA 162
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 66.7 bits (163), Expect = 7e-15
Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 13/139 (9%)
Query: 2 RKAFQMF-DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCR 59
+ ++ F +G + + + + + + D + G ++F +
Sbjct: 17 HQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVA 76
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL------DDKLNPEDL 113
+ L+ ++L+ F+LYD +GNG I L I+ A+ ++ + E+
Sbjct: 77 ALSLVLKGKV----DQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEF 132
Query: 114 -DGIIQEIDTDGSGTVDFD 131
+ + +ID +G G + +
Sbjct: 133 TNMVFDKIDINGDGELSLE 151
Score = 32.1 bits (73), Expect = 0.033
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQA-------LIDENDPDATGKVN 53
+R F+++D G ID ++ I+ + + E + D+ D + G+++
Sbjct: 90 LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Query: 54 FDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLRE 99
+ F D +L +L +G E
Sbjct: 150 LEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDGKNPHAPEEAEE 195
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 66.0 bits (161), Expect = 1e-14
Identities = 17/147 (11%), Positives = 38/147 (25%), Gaps = 22/147 (14%)
Query: 5 FQMFDTAKTGFIDTLKISTILNTMGQLFD---------------DTELQALIDENDPDAT 49
+D G I+ + + L L D +
Sbjct: 19 NTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENED 78
Query: 50 GKVNFDGFCRIATHFL-----EEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL 104
+V + + ++ + E E + + + F + D G+ I + +
Sbjct: 79 EQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSY 138
Query: 105 DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ D D + G V +
Sbjct: 139 G--IPKSDCDAAFDTLSDGGKTMVTRE 163
Score = 41.0 bits (96), Expect = 3e-05
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
M F + DT+ ID + ST+ + G ++ A D V + F R+
Sbjct: 111 MNFMFDVNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARL 168
Query: 61 ATHFLEEDDAEA 72
T + +D A
Sbjct: 169 WTEYFVSNDRGA 180
Score = 25.2 bits (55), Expect = 7.9
Identities = 8/82 (9%), Positives = 18/82 (21%), Gaps = 9/82 (10%)
Query: 34 DTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ + D ND ++ + + + + AF G +
Sbjct: 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPK------SDCDAAFDTLSDGGKTMV- 160
Query: 94 TATLREILAALDDKLNPEDLDG 115
T + D
Sbjct: 161 --TREIFARLWTEYFVSNDRGA 180
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 66.0 bits (161), Expect = 2e-14
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 1 MRKAFQMFDT--AKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58
+ + F+ + G I + L + + + D D G + F F
Sbjct: 39 LYELFKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRNGVIEFGEFV 97
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA--------LDDKLNP 110
R F E++K AF+LYD G+I L+E++ A L + +
Sbjct: 98 RSLGVFHPSAPVH---EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIE 154
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
+D + D G +D D
Sbjct: 155 VMVDKAFVQADRKNDGKIDID 175
Score = 35.5 bits (82), Expect = 0.002
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM----GQLFDDTELQALID----ENDPDATGKV 52
++ AF+++D +TGFI+ ++ ++ + + + ++ ++D + D GK+
Sbjct: 113 VKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKI 172
Query: 53 NFDGFCRIA 61
+ D +
Sbjct: 173 DIDEWKDFV 181
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 62.7 bits (153), Expect = 4e-14
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
+ + ++++ + A N+ F + D ++K+ F + D++
Sbjct: 3 ITDILSAKDIESALS--SCQAADSFNYKSFFSTVGLSSKTPD------QIKKVFGILDQD 54
Query: 88 GNGYITTATLREILAAL---DDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+G+I L+ L L + + DTDG G + +
Sbjct: 55 KSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
Score = 38.4 bits (90), Expect = 6e-05
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMG---QLFDDTELQALIDENDPDATGKVNFDGF 57
++K F + D K+GFI+ ++ L ++ E +A + D D GK+ + F
Sbjct: 44 IKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEF 103
Query: 58 CRI 60
+
Sbjct: 104 QSL 106
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 61.5 bits (150), Expect = 6e-14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 74 QEELKEAFRLYD-REGN-GYITTATLREILAALDDKL--NPEDLDGIIQEIDTDGSGTVD 129
EE+K AF ++ +EG+ I+ L+ ++ L L LD +I+E+D +G G V
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 130 FD 131
F+
Sbjct: 64 FE 65
Score = 38.0 bits (89), Expect = 5e-05
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 1 MRKAFQMFDTA--KTGFIDTLKISTILNTMGQLFDDT--ELQALIDENDPDATGKVNFDG 56
++ AF++F I ++ ++ T+G L +I+E D + G+V+F+
Sbjct: 7 IKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEE 66
Query: 57 FCRI 60
F +
Sbjct: 67 FLVM 70
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 62.8 bits (153), Expect = 1e-13
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 5 FQMFD--TAKTGFIDTLKISTILNTMGQL-----FDDTELQALIDENDPDATGKVNFDGF 57
+ F + G ID ++ L G F+ + ++ D D +G + F+ F
Sbjct: 5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 64
Query: 58 CRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGII 117
+ ++ F +D + +G + L++ L + +LNP+ ++ I
Sbjct: 65 KELWAVL----------NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIA 114
Query: 118 QEIDTDGSGTVDFD 131
+ T G + FD
Sbjct: 115 KRYSTSGK--ITFD 126
Score = 57.4 bits (139), Expect = 1e-11
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
R+ F FD+ ++G +D ++ L TMG + + ++ GK+ FD +
Sbjct: 74 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS--GKITFDDYIAC 131
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
L ++FR D G +
Sbjct: 132 CVKL----------RALTDSFRRRDSAQQGMVN 154
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 62.4 bits (152), Expect = 2e-13
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQ--------LFDDTELQALIDENDPDATGKV 52
R+ F + ++ ILN + F ++++ D D TGK+
Sbjct: 6 FRRLFAQLAG-DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL 64
Query: 53 NFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED 112
F+ F + + ++ + ++ +D + +G I ++ L A LN
Sbjct: 65 GFEEFKYLWNNI----------KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHL 114
Query: 113 LDGIIQEIDTDGSGTVDFD 131
II+ +D G +DFD
Sbjct: 115 YSMIIRR-YSDEGGNMDFD 132
Score = 51.7 bits (124), Expect = 2e-09
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ ++ FD ++G I + ++ G ++ +I D G ++FD F
Sbjct: 79 WQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISC 137
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ + AF+ D++G G I
Sbjct: 138 LVRL----------DAMFRAFKSLDKDGTGQIQ 160
Score = 37.4 bits (87), Expect = 4e-04
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAAL--------DDKLNPEDLDGIIQEIDTDGS 125
+ + F + + ++ L IL + D + ++ +D+D +
Sbjct: 3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 126 GTVDFD 131
G + F+
Sbjct: 62 GKLGFE 67
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 61.7 bits (150), Expect = 4e-13
Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 8 FDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEE 67
+++ + +I ++ F + + + + ++F+ F + + F +
Sbjct: 37 VESSLRAQVPFEQILSLPELKANPFKE-RICRVFSTSPAK--DSLSFEDFLDLLSVFSDT 93
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDL---------DGIIQ 118
+ + AFR++D + +G + L ++ L + L D I++
Sbjct: 94 ATPD---IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILE 150
Query: 119 EIDTDGSGTVDFD 131
E D D GT++
Sbjct: 151 ESDIDRDGTINLS 163
Score = 33.2 bits (76), Expect = 0.011
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM-----GQLFDDTELQALID----ENDPDATGK 51
AF++FD G ++ +S ++N + +E++ LID E+D D G
Sbjct: 100 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 159
Query: 52 VNFDGFCRIATH 63
+N F + +
Sbjct: 160 INLSEFQHVISR 171
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 60.0 bits (146), Expect = 4e-13
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 28 MGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDRE 87
+ + ++ A + + F T L + A ++K+ FR D +
Sbjct: 2 ITDILSAEDIAAALQ--ECQDPDTFEPQKF--FQTSGLSKMSAS----QVKDIFRFIDND 53
Query: 88 GNGYITTATLREILAALDD---KLNPEDLDGIIQEIDTDGSGTVDFD 131
+GY+ L+ L +L + ++ D DG G + D
Sbjct: 54 QSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Score = 40.0 bits (94), Expect = 2e-05
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL---FDDTELQALIDENDPDATGKVNFDGF 57
++ F+ D ++G++D ++ L ++E ++L+D D D GK+ D F
Sbjct: 43 VKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEF 102
Query: 58 CRI 60
+
Sbjct: 103 QEM 105
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 62.1 bits (151), Expect = 5e-13
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 1 MRKAFQMFDTA--KTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58
+ + F+ +A G I+ + L + + D D G + F+ F
Sbjct: 50 LYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILGFEEFA 108
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA--------LDDKLNP 110
R + F + +++ +F+LYD + G+I +++++ A L D +
Sbjct: 109 RALSVFHPNAPID---DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIE 165
Query: 111 EDLDGIIQEIDTDGSGTVDFD 131
+ +D +E DT G +D +
Sbjct: 166 DIIDKTFEEADTKHDGKIDKE 186
Score = 35.6 bits (82), Expect = 0.002
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTM----GQLFDDTELQALID----ENDPDATGKV 52
+ +FQ++D + GFI+ ++ ++ G DT ++ +ID E D GK+
Sbjct: 124 IHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKI 183
Query: 53 NFDGFCRIA 61
+ + + +
Sbjct: 184 DKEEWRSLV 192
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 59.0 bits (143), Expect = 1e-12
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ + F +D I+ R I L E D + E+ + G + +
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP 80
Score = 48.6 bits (116), Expect = 1e-08
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCR 59
+ + F+ FDT KT I + I N Q+ D + L +E +A G++ + F
Sbjct: 26 ITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84
Score = 24.7 bits (54), Expect = 6.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 95 ATLREILAALDDKL--NPEDLDGIIQEIDTDGSGTVDFD 131
R+ILA L + + + + DT + T+ +
Sbjct: 6 TADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISRE 44
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 60.7 bits (147), Expect = 1e-12
Identities = 20/152 (13%), Positives = 43/152 (28%), Gaps = 23/152 (15%)
Query: 1 MRKAFQ-MFDTAKTGFIDTLKISTILNTMGQLFD---------------DTELQALIDEN 44
++ F D G I ++ ++ + E + L
Sbjct: 10 IKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRA 69
Query: 45 DPDATGKVNFDGFCRIATHFL-----EEDDAEAMQEELKEAFRLYDREGNGYITTATLRE 99
D + V+++ + + + D Q + F+ D G+G + +
Sbjct: 70 DINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN 129
Query: 100 ILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
L D+ + I G T D +
Sbjct: 130 YCKNFQ--LQCADVPAVYNVITDGGKVTFDLN 159
Score = 41.4 bits (97), Expect = 1e-05
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F+ D + G +D + ++ A+ + + + + +
Sbjct: 107 IPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKEL 164
Query: 61 ATHFLEEDDAEA 72
L A+A
Sbjct: 165 YYRLLTSPAADA 176
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 59.1 bits (143), Expect = 6e-12
Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 8 FDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEE 67
+++ + +I ++ F + + + + ++F+ F + + F +
Sbjct: 68 VESSLRAQVPFEQILSLPELKANPFKE-RICRVFSTSPAK--DSLSFEDFLDLLSVFSDT 124
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDL---------DGIIQ 118
+ + AFR++D + +G + L ++ L + L D I++
Sbjct: 125 ATPD---IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILE 181
Query: 119 EIDTDGSGTVDFD 131
E D D GT++
Sbjct: 182 ESDIDRDGTINLS 194
Score = 32.9 bits (75), Expect = 0.018
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 4 AFQMFDTAKTGFIDTLKISTILNTM-----GQLFDDTELQALID----ENDPDATGKVNF 54
AF++FD G ++ +S ++N + +E++ LID E+D D G +N
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 55 DGFCRIATH 63
F + +
Sbjct: 194 SEFQHVISR 202
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 57.5 bits (139), Expect = 2e-11
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 5 FQMF-DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCRIAT 62
++ F +G + + I D ++ + + D + G ++F F +
Sbjct: 31 YKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS 90
Query: 63 HFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL-----------DDKLNPE 111
++++LK AF +YD +GNGYI+ A + EI+ A+ +D+ PE
Sbjct: 91 VTSRGK----LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPE 146
Query: 112 DL-DGIIQEIDTDGSGTVDFD 131
+ I +++DT+ G + +
Sbjct: 147 KRTEKIFRQMDTNRDGKLSLE 167
Score = 27.1 bits (60), Expect = 1.6
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
++ AF M+D G+I ++ I+ + ++ D++ + + + D +
Sbjct: 101 LKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNR 160
Query: 49 TGKVNFDGFCRIA 61
GK++ + F R A
Sbjct: 161 DGKLSLEEFIRGA 173
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 56.0 bits (135), Expect = 6e-11
Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 2 RKAFQMF-DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCR 59
++ ++ F +G ++ + I D + + + + D D G ++F F
Sbjct: 28 QQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFIC 87
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL-----------DDKL 108
+ + + ++L AF+LYD + NG I+ + I+ A+ +D+
Sbjct: 88 ALSVTSRGE----LNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDED 143
Query: 109 NPEDL-DGIIQEIDTDGSGTVDFD 131
PE + I +D + G + +
Sbjct: 144 TPEKRVNKIFNMMDKNKDGQLTLE 167
Score = 28.6 bits (64), Expect = 0.48
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
+ AFQ++D G I ++ I++ + ++ D+ + ++ D +
Sbjct: 101 LIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNK 160
Query: 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85
G++ + FC + + A LYD
Sbjct: 161 DGQLTLEEFCEGSKRD----------PTIVSALSLYD 187
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 54.6 bits (132), Expect = 5e-10
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 16/130 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
++ Q+ + G ++ D + A E + ++F F
Sbjct: 321 IKVTEQLIEAISNGDFESYTKMC----------DPGMTAFEPEALGNLVEGLDFHRF--Y 368
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+ + + + + + I + + LD P +
Sbjct: 369 FENLWSRNSKP-VHTTILNPHIHLMGDESACIAYIRITQ---YLDAGGIPRTAQSEETRV 424
Query: 121 DTDGSGTVDF 130
G
Sbjct: 425 WHRRDGKWQI 434
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 53.3 bits (128), Expect = 6e-10
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 9 DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCRIATHFLEE 67
+G +D I D T+ + + D + G++ F F + +
Sbjct: 36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG 95
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAAL-----------DDKLNPEDL-DG 115
+ E+L+ AF+LYD + +GYIT + +I+ A+ +++ PE D
Sbjct: 96 T----LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDR 151
Query: 116 IIQEIDTDGSGTVDFD 131
I +D + G +
Sbjct: 152 IFAMMDKNADGKLTLQ 167
Score = 27.9 bits (62), Expect = 0.72
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 22/97 (22%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
+R AF+++D G+I ++ I++ + Q+ ++ + +D D +A
Sbjct: 101 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNA 160
Query: 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85
GK+ F + D + +A LYD
Sbjct: 161 DGKLTLQEFQ----EGSKAD------PSIVQALSLYD 187
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 52.9 bits (127), Expect = 1e-09
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 18/144 (12%)
Query: 2 RKAFQMF-DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCR 59
++ + F +G + I + L D D G ++F+ F
Sbjct: 28 QQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFIT 87
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA------------LDDK 107
+ + ++E+L AF LYD +GYIT + I+A+ D+
Sbjct: 88 VLSTTSRGT----LEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEA 143
Query: 108 LNPEDLDGIIQEIDTDGSGTVDFD 131
+ I + +D + G + D
Sbjct: 144 TPEMRVKKIFKLMDKNEDGYITLD 167
Score = 30.2 bits (68), Expect = 0.13
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
+ AF+++D G+I ++ TI+ ++ ++ D+ + + D +
Sbjct: 101 LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNE 160
Query: 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85
G + D F + D + A LYD
Sbjct: 161 DGYITLDEFR----EGSKVD------PSIIGALNLYD 187
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 49.5 bits (119), Expect = 2e-09
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 77 LKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ F+ D G+G ++ ++ ++ N + L I + ID DG+G +D +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 36.8 bits (86), Expect = 1e-04
Identities = 9/60 (15%), Positives = 24/60 (40%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
F+ D G + ++ ++ + ++ LQ + D D G+++ + F +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 33.3 bits (77), Expect = 0.003
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 37 LQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTAT 96
+AL E D + G V+++ F+ + A ++ L+ F+ D +GNG I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEV----KAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNE 57
Query: 97 LREILAAL 104
+ ++
Sbjct: 58 FAKFYGSI 65
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 50.3 bits (120), Expect = 1e-08
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCR 59
+ + F+ +G ++ I + D T L + D D G V+F+ F +
Sbjct: 69 LYRGFKNEC--PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIK 126
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED------- 112
+ L +QE+L AF LYD +GYIT + +I+ A+ D +
Sbjct: 127 GLSILLRGT----VQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKED 182
Query: 113 -----LDGIIQEIDTDGSGTVDFD 131
++ Q++D + G V D
Sbjct: 183 APRQHVETFFQKMDKNKDGVVTID 206
Score = 26.0 bits (57), Expect = 4.5
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
+ AF ++D K G+I ++ I+ + + + + ++ + D +
Sbjct: 140 LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK 199
Query: 49 TGKVNFDGFCRIA 61
G V D F
Sbjct: 200 DGVVTIDEFIESC 212
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 50.4 bits (120), Expect = 1e-08
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + F+ DT K+ Q T L + D D G ++F+ F
Sbjct: 96 LYRGFKNECPTGLVDEDTFKL-IYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVG 154
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED-------- 112
+ L + E+LK AF LYD +G IT + I+ ++ D +
Sbjct: 155 LSILLRGT----VHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDA 210
Query: 113 ----LDGIIQEIDTDGSGTVDFD 131
++ Q++D + G V D
Sbjct: 211 PLEHVERFFQKMDRNQDGVVTID 233
Score = 25.4 bits (55), Expect = 7.2
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
++ AF ++D K G I ++ I+ ++ + + ++ + D +
Sbjct: 167 LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ 226
Query: 49 TGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85
G V D F ++D E + + +L++
Sbjct: 227 DGVVTIDEFL----ETCQKD------ENIMNSMQLFE 253
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 49.6 bits (118), Expect = 3e-08
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 26 NTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYD 85
T L + D TG V F+ F + L + E+L+ F LYD
Sbjct: 80 QFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGT----VHEKLRWTFNLYD 135
Query: 86 REGNGYITTATLREILAALDDKLNPED------------LDGIIQEIDTDGSGTVDFD 131
+GYI + +I+ A+ D + +D Q++D + G V D
Sbjct: 136 INKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
Score = 25.3 bits (55), Expect = 6.9
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLF--------DDTELQALID----ENDPDA 48
+R F ++D K G+I+ ++ I+ + + + + +D + D +
Sbjct: 127 LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK 186
Query: 49 TGKVNFDGFCRIA 61
G V D F
Sbjct: 187 DGIVTLDEFLESC 199
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 48.4 bits (115), Expect = 5e-08
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 9 DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCRIATHFLEE 67
TG I + +I D Q + D + G ++F +
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAG 103
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDL-------------- 113
++L+ AF LYD +GNG I+ + EI+ A+ + PED+
Sbjct: 104 K----TNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRA 159
Query: 114 DGIIQEIDTDGSGTVDFD 131
+ I + + +
Sbjct: 160 EKIWKYFGKNDDDKLTEK 177
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 48.4 bits (114), Expect = 1e-07
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
R +F FD KTG +D L +MG + E ++ DP+ G V F F
Sbjct: 727 FRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDF 786
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAA 103
+ + D +++ +F++ YIT LR L
Sbjct: 787 MSRETADTDT---ADQVMASFKILA-GDKNYITVDELRRELPP 825
Score = 37.6 bits (86), Expect = 5e-04
Identities = 12/66 (18%), Positives = 27/66 (40%)
Query: 66 EEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGS 125
+ ++ E + +F +DR+ G + R L ++ + + I+ +D +
Sbjct: 716 AKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRM 775
Query: 126 GTVDFD 131
G V F
Sbjct: 776 GVVTFQ 781
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 47.1 bits (112), Expect = 1e-07
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 17/136 (12%)
Query: 9 DTAKTGFIDTLKISTILNTMGQLFDDTEL-QALIDENDPDATGKVNFDGFCRIATHFLEE 67
+ +G ++ I D + L + D TG V F+ F + L
Sbjct: 29 NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRG 88
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED------------LDG 115
+ E+L+ F LYD +GYI + +I+ A+ D + +D
Sbjct: 89 T----VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDV 144
Query: 116 IIQEIDTDGSGTVDFD 131
Q++D + G V D
Sbjct: 145 FFQKMDKNKDGIVTLD 160
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 45.1 bits (107), Expect = 2e-07
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
++ + + ++ F +D+ +G++T R IL L L I D D G +
Sbjct: 10 QSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQS--SLPQAQLASIWNLSDIDQDGKLTA 67
Query: 131 D 131
+
Sbjct: 68 E 68
Score = 37.8 bits (88), Expect = 1e-04
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
R+ F D +G + + TIL +L ++ + +D D GK+ + F +A
Sbjct: 17 RQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTAEEFI-LA 73
Query: 62 THFLE 66
H ++
Sbjct: 74 MHLID 78
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 46.7 bits (110), Expect = 4e-07
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 21 ISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEA 80
++ + F + ++D D D +GK+ F + T ++ ++
Sbjct: 561 LAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI----------QKYQKI 610
Query: 81 FRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+R D + +G + + +R+ L KL + I+ D +DFD
Sbjct: 611 YREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFD 660
Score = 43.3 bits (101), Expect = 7e-06
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+K ++ D ++G +++ ++ L G Q ++ D ++FD F R
Sbjct: 607 YQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRC 665
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
E L + F+ D E G I
Sbjct: 666 LVRL----------EILFKIFKQLDPENTGTIQ 688
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 43.5 bits (103), Expect = 7e-07
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
A + + E F D++ +G+++ +REI L L I DT G +
Sbjct: 6 PAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLSK 63
Query: 131 D 131
D
Sbjct: 64 D 64
Score = 34.7 bits (80), Expect = 0.002
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
+ F D GF+ L++ I G T L + D GK++ D F +A
Sbjct: 13 DEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFA-LA 69
Query: 62 THFLE 66
H +
Sbjct: 70 FHLIS 74
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 44.0 bits (104), Expect = 7e-07
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
E +E FR + + +I+ + + KL+ +L I + D D G +
Sbjct: 18 EEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALTL 75
Query: 131 D 131
Sbjct: 76 P 76
Score = 34.3 bits (79), Expect = 0.003
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
F+ + FI EL + + +D D G + FC A
Sbjct: 25 VNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFC-AA 81
Query: 62 THFLE 66
H +
Sbjct: 82 FHLIV 86
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 45.2 bits (106), Expect = 1e-06
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL--------FDDTELQALIDENDPDATGKV 52
RK F + ++ ILN + F ++++ D D TGK+
Sbjct: 733 FRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL 791
Query: 53 NFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPED 112
F+ F + + ++ + ++ ++ + +G I + L A LN
Sbjct: 792 GFEEFKYLWNNI----------KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHI 841
Query: 113 LDGIIQEIDTDGSGTVDFD 131
II+ D +G +DFD
Sbjct: 842 YSMIIRRYS-DETGNMDFD 859
Score = 43.6 bits (102), Expect = 4e-06
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
+ ++ F+T ++G I + ++ G + +I D TG ++FD F
Sbjct: 807 QGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS-DETGNMDFDNFISCL 865
Query: 62 THFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
+ + AFR D+ G G I
Sbjct: 866 VRL----------DAMFRAFRSLDKNGTGQIQ 887
Score = 42.8 bits (100), Expect = 8e-06
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 38 QALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATL 97
+++++ D D GK+ F + FR +D + +G ++ +
Sbjct: 580 RSMVNLMDRDGNGKLGLVEFNILWNRI----------RNYLTIFRKFDLDKSGSMSAYEM 629
Query: 98 REILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
R + A KL + I+ D +DFD
Sbjct: 630 RMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFD 662
Score = 39.0 bits (90), Expect = 2e-04
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
F+ FD K+G + ++ + G Q ++ D ++FD F R
Sbjct: 609 YLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRC 667
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYIT 93
E L + F+ D E G I
Sbjct: 668 LVRL----------EILFKIFKQLDPENTGTIQ 690
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 42.4 bits (100), Expect = 2e-06
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ ++ F+ + NG+I + +E KL +L I + D D G +
Sbjct: 5 DEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALTL 62
Query: 131 D 131
D
Sbjct: 63 D 63
Score = 34.7 bits (80), Expect = 0.002
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIA 61
F+ GFI EL + + +D D G + D FC A
Sbjct: 12 VNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFC-AA 68
Query: 62 THFLE 66
H +
Sbjct: 69 FHLVV 73
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 41.4 bits (96), Expect = 3e-05
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ + D K ++ ++ L + DD + + E D T + +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 61 ATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL 101
+ + E+ AF ++ L L
Sbjct: 73 YKMLTQ-------RAEIDRAFEEAAGSAE-TLSVERLVTFL 105
Score = 38.0 bits (87), Expect = 4e-04
Identities = 10/64 (15%), Positives = 28/64 (43%)
Query: 68 DDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGT 127
D + +Q + R D+ + + L++ L L+ +++ I +E D + +
Sbjct: 4 DQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDS 63
Query: 128 VDFD 131
++ +
Sbjct: 64 LEDE 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-05
Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 49/150 (32%)
Query: 4 AFQMFDTAKTGFIDTLKISTILN-------TMGQLFDDTELQALIDENDPDATGKVNFDG 56
A +++ A F DT S IL+ + F + + I EN + DG
Sbjct: 1642 AQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEKGKR-IRENYSAMIFETIVDG 1699
Query: 57 FCRIATHFLEEDDA------EAMQEELKE--------------AFRLYDREGN------- 89
+ F E ++ + + L AF +G
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 90 -G-----YITTATLREILAALDDKLNPEDL 113
G Y A LA+L D ++ E L
Sbjct: 1760 AGHSLGEY--AA-----LASLADVMSIESL 1782
Score = 30.0 bits (67), Expect = 0.25
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 55 DGFCRI---ATHFLEEDDAEAMQEELKEAFRLY----DREGNGYITTATLREILAALDDK 107
+ F +I T DD EL F Y L L ++
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 108 -LNPEDLDGIIQEIDTDGSGTV 128
L D+ + ++ + T+
Sbjct: 95 YLEGNDIHALAAKLLQENDTTL 116
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 75 EELKEAFRLYDREGNGYITTA--TLREILAALDD--KLNPEDLD 114
EEL++ ++ Y I + TL E++ D K+ + L+
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 38.3 bits (89), Expect = 7e-05
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ +R + G + L L L I DTDG G +
Sbjct: 15 KYYRQVEAGNTGRVLALDAAAFLKKS--GLPDLILGKIWDLADTDGKGVLSKQ 65
Score = 32.9 bits (75), Expect = 0.007
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58
K ++ + TG + L + L G D L + D D D G ++ F
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFF 68
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/73 (19%), Positives = 26/73 (35%)
Query: 57 FCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGI 116
+ +A H+L DD E M + + N + E+ +D L
Sbjct: 219 YVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES 278
Query: 117 IQEIDTDGSGTVD 129
+ ID +G++
Sbjct: 279 QEMIDRLMAGSLT 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 2e-04
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 46/160 (28%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC--- 58
+ +F+ A F+D + + + E+ +I D + F
Sbjct: 19 KDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 59 -RIATHFLEEDD-------AEAMQEELKE---AFRLY----DREGNG------YITT--- 94
+ F+EE ++ E ++ R+Y DR N Y +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 95 --ATLREILAALDDKLNPED---LDGIIQEIDTDGSG-TV 128
LR+ L +L P +DG++ GSG T
Sbjct: 136 PYLKLRQALL----ELRPAKNVLIDGVL------GSGKTW 165
Score = 28.7 bits (63), Expect = 0.72
Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 38/136 (27%)
Query: 19 LKISTILNTMGQLFDDTELQ-ALI---DENDPDATGKVN-FDGFCRI------------- 60
L+I +I + +L + L+ + + A N F+ C+I
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVTDFL 281
Query: 61 ----ATHFLEEDDAEAM-QEELKEAFRLYDREGNGYITTATL-REILAALDDKLNPEDLD 114
TH + + + +E+K Y L RE+L NP L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----CRPQDLPREVL-----TTNPRRL- 330
Query: 115 GIIQEIDTDGSGTVDF 130
II E DG T D
Sbjct: 331 SIIAESIRDGLATWDN 346
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 37.6 bits (87), Expect = 3e-04
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 65 LEEDDAEAMQEELK-EAFRLYDREGNGYITTATLREILAALDDKLNPED----------- 112
+ + +AE +EL+ F+++D +GN + L + + + E
Sbjct: 57 INKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELIN 116
Query: 113 -LDGIIQEIDTDGSGTVDFD 131
+DG++++ D + G +D+
Sbjct: 117 IIDGVLRDDDKNNDGYIDYA 136
Score = 29.6 bits (66), Expect = 0.16
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTILNTM--------GQLFDDTELQALID----ENDPDAT 49
F+M D +D L++ST + + L + EL +ID ++D +
Sbjct: 71 LHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNND 130
Query: 50 GKVNFDGFCR 59
G +++ F +
Sbjct: 131 GYIDYAEFAK 140
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 36.0 bits (83), Expect = 8e-04
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 71 EAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ + + F +G+IT R L L I D + G +D
Sbjct: 29 VEERAKHDQQFHSLKP-ISGFITGDQARNFF--FQSGLPQPVLAQIWALADMNNDGRMDQ 85
Query: 131 D 131
Sbjct: 86 V 86
Score = 28.7 bits (64), Expect = 0.33
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 6 QMFDT--AKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATH 63
Q F + +GFI + G L + D + G+++ F IA
Sbjct: 37 QQFHSLKPISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQVEFS-IAMK 93
Query: 64 FLE 66
++
Sbjct: 94 LIK 96
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 35.2 bits (81), Expect = 0.001
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 74 QEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ + F NG+++ ++ +L L+ KL + L + + D D G +D D
Sbjct: 14 KAKYDAIFDSLSP-VNGFLSGDKVKPVL--LNSKLPVDILGRVWELSDIDHDGMLDRD 68
Score = 25.1 bits (55), Expect = 4.8
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 6 QMFDT--AKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFC 58
+FD+ GF+ K+ +L L + + +D D G ++ D F
Sbjct: 19 AIFDSLSPVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDRDEFA 71
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 75 EELKEAFRLYDREGNGYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGTVD 129
E + F + + GY+T LR ++ L+++ +P +D I++++D G V
Sbjct: 9 ETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG 67
Query: 130 FD 131
F
Sbjct: 68 FQ 69
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 34.2 bits (79), Expect = 0.002
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 75 EELKEAFRLYD-REGN-GYITTATLREILAAL--DDKLNPEDLDGIIQEIDTDGSGTVDF 130
ELK F Y +EG+ ++ L++++ A P LD + QE+D +G G V F
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 131 D 131
+
Sbjct: 67 E 67
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 33.3 bits (76), Expect = 0.006
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 69 DAEAMQEELKEAFRLY-DREGN-GYITTATLREILAA-----LDDKLNPEDLDGIIQEID 121
E + + F Y +EG+ + + L+E+L L + + ++ +D
Sbjct: 7 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLD 66
Query: 122 TDGSGTVDFD 131
++ VDF
Sbjct: 67 SNRDNEVDFQ 76
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 32.8 bits (75), Expect = 0.006
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 75 EELKEAFRLY-DREGNG-YITTATLREILAA-LDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
+ + + Y +GN + L+++L + + D +E+D + G V+F
Sbjct: 10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 33.4 bits (76), Expect = 0.007
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 69 DAEAMQEELKEAFRLY-DREGN-GYITTATLREIL-----AALDDKLNPEDLDGIIQEID 121
E + + F Y +EG+ + + L+E+L + L + + ++ +D
Sbjct: 16 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLD 75
Query: 122 TDGSGTVDFD 131
++ VDF
Sbjct: 76 SNRDNEVDFQ 85
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 33.8 bits (77), Expect = 0.008
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFD---DTELQALIDENDPDATGKVNFDGF 57
+ FQ T G + + + + L EL L+ D+ G+V+F
Sbjct: 78 YQHVFQKVQT-SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSL 136
Query: 58 CRIATHFLEEDDAEAMQEELKEAFRLYDREGNG 90
E + + FR ++G G
Sbjct: 137 VCFLMRL----------EAMAKTFRNLSKDGKG 159
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 32.6 bits (74), Expect = 0.014
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 79 EAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
E F NG IT A ++ + + KL L I + D D G +D +
Sbjct: 55 EIFYTLS-PVNGKITGANAKKEM--VKSKLPNTVLGKIWKLADVDKDGLLDDE 104
Score = 25.3 bits (55), Expect = 5.8
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 6 QMFDT--AKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATH 63
++F T G I + +T L + D D G ++ + F +A H
Sbjct: 55 EIFYTLSPVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDDEEFA-LANH 111
Query: 64 FLE 66
++
Sbjct: 112 LIK 114
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 31.7 bits (72), Expect = 0.016
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 69 DAEAMQEELKEAFRLY-DREGN-GYITTATLREIL-----AALDDKLNPEDLDGIIQEID 121
E + + F Y +EG+ + + L+E+L + L + + ++ +D
Sbjct: 4 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLD 63
Query: 122 TDGSGTVDFD 131
++ VDF
Sbjct: 64 SNRDNEVDFQ 73
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 31.7 bits (72), Expect = 0.017
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREIL-----AALDDKLNPEDLDGIIQEIDTDGSGT 127
E L F + +EG+ ++ L+++L + LD + + + +D I++E+D +G G
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
Query: 128 VDFD 131
VDF
Sbjct: 69 VDFQ 72
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 31.8 bits (72), Expect = 0.023
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGNGY-ITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGT 127
+ F+ Y R G+ Y + A L+E+L + D + + +DT+
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69
Query: 128 VDFD 131
VDF
Sbjct: 70 VDFV 73
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 30.5 bits (69), Expect = 0.044
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREIL-----AALDDKLNPEDLDGIIQEIDTDGSGT 127
L + F Y REG+ + + L+E++ L++ E +D +++ +D++G G
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGE 68
Query: 128 VDFD 131
DF
Sbjct: 69 CDFQ 72
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 30.5 bits (69), Expect = 0.048
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 69 DAEAMQEELKEAFRLY-DREGNGY-ITTATLREILAA-----LDDKLNPEDLDGIIQEID 121
E E + F Y R+G+ ++ L+++L + + + +D I Q +D
Sbjct: 6 KLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLD 65
Query: 122 TDGSGTVDFD 131
+ VDF
Sbjct: 66 ANQDEQVDFQ 75
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 30.6 bits (69), Expect = 0.055
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGT 127
+ L F Y EG+ ++ L+E+L A L + +P ++ I+ ++D++
Sbjct: 10 DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNE 69
Query: 128 VDFD 131
VDF+
Sbjct: 70 VDFN 73
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 30.2 bits (68), Expect = 0.062
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSGT 127
E L F+ + R+GN I+ + ++ +P LD +++++D D G
Sbjct: 13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQ 72
Query: 128 VDFD 131
+DF
Sbjct: 73 LDFQ 76
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 30.2 bits (68), Expect = 0.070
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREILAA-LDDKL-NPEDLDGIIQEIDTDGSGTVDF 130
E + F + +EG ++ +E++ L L + LD ++ +D + + F
Sbjct: 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKF 81
Query: 131 D 131
+
Sbjct: 82 N 82
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 30.1 bits (68), Expect = 0.071
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREIL---AALDDKLNPEDLDGIIQEIDTDGSGTVD 129
L F Y REG+ ++ L+E++ + KL ++ +++++D + V+
Sbjct: 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
Query: 130 FD 131
F
Sbjct: 70 FQ 71
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 30.2 bits (68), Expect = 0.074
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 69 DAEAMQEELKEAFRLY-DREGN-GYITTATLREILAA-----LDDKLNPEDLDGIIQEID 121
E L F Y +EG+ ++ ++E+L + +K++ E L ++ +D
Sbjct: 5 SLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLD 64
Query: 122 TDGSGTVDFD 131
+ VDF
Sbjct: 65 ENSDQQVDFQ 74
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 30.2 bits (68), Expect = 0.079
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 75 EELKEAFRLY-DREGN--GYITTATLREILAA-----LDDKLNPEDLDGIIQEIDTDGSG 126
L E F Y + I+ ++ RE+L L D N + D +IQ +D + G
Sbjct: 11 IVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDG 70
Query: 127 TVDFD 131
+ FD
Sbjct: 71 RISFD 75
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 30.3 bits (68), Expect = 0.082
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREILAA------LDDKLNPEDLDGIIQEIDTDGSG 126
E + F Y + G+ + +E++ + N + ++ I++++DT+
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADK 71
Query: 127 TVDFD 131
+ F+
Sbjct: 72 QLSFE 76
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.7 bits (67), Expect = 0.086
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREILAA--LDDKLNPEDLDGIIQEIDTDGSGTVDF 130
+ F Y REG+ ++ L+E++ ++ +D +++ +D + +DF
Sbjct: 10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDF 69
Query: 131 D 131
Sbjct: 70 K 70
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 30.4 bits (68), Expect = 0.11
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 29 GQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREG 88
Q+FD + + D F E+ + L+ F + D+
Sbjct: 62 VQMFD------SLARKRGIVKQVLTKDEL----KDFYEQLTDQGFDNRLRTFFDMVDKNA 111
Query: 89 NGYITTATLREILAALDDKLNPEDLD--------GIIQEIDTDGSGTVDFD 131
+G +T ++EI+A + I++E+D G ++ +
Sbjct: 112 DGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEME 162
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.0 bits (65), Expect = 0.18
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 75 EELKEAFRLY-DREGN-GYITTATLREIL-----AALDDKLNPEDLDGIIQEIDTDGSGT 127
+ + F Y EG+ +T L+ ++ L + + +D +++++D +G
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQ 68
Query: 128 VDFD 131
VDF
Sbjct: 69 VDFS 72
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.8 bits (64), Expect = 0.22
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 66 EEDDAEAMQE-ELKEAFRLYDREGNGYITTATLREILAALDDKL----NPED-------- 112
EE D K F L+D +G + L + +K+ N ED
Sbjct: 10 EELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEE 69
Query: 113 ----LDGIIQEIDTDGSGTVDFD 131
+ +++ +DT+ V +
Sbjct: 70 RLRMREHVMKNVDTNQDRLVTLE 92
Score = 24.5 bits (53), Expect = 8.5
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRI 60
+ F + D G +D ++ + EL+ + D + + + + R+
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFT--------KELEKVYDPKNEEDDMREMEEERLRM 73
Query: 61 ATHFLEEDD 69
H ++ D
Sbjct: 74 REHVMKNVD 82
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 28.9 bits (64), Expect = 0.46
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 28/140 (20%)
Query: 2 RKAFQMFDTAKTGFIDTLKISTI--------LNTMGQLFDDTELQALIDE----NDPDAT 49
R A ++ K +D L +S L Q D ++ + + +
Sbjct: 62 RTAMKLRRLQKALCLDLLSLSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHN 121
Query: 50 GKVNFDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLN 109
VN + ++L +YD G I + + + +L
Sbjct: 122 NLVNVPLCVDMCLNWL---------------LNVYDTGRTGRIRVLSFKTGIISLCKAHL 166
Query: 110 PEDLDGIIQEIDTDGSGTVD 129
+ + +++ +G D
Sbjct: 167 EDKYRYLFKQVA-SSTGFCD 185
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis
receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A
{Vibrio parahaemolyticus}
Length = 146
Score = 28.1 bits (63), Expect = 0.51
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGY--ITTATLREILAALDDKL------NPE 111
+ D + ++ KE + E +GY + L A+ L + +
Sbjct: 28 AIKPLYDSDVNGSNKQAAKEILKAMRFESDGYFFAYDSQGINTLHAIKPSLEGKNLYDLK 87
Query: 112 DLDG--IIQEIDT---DGSGTVDF 130
D +G +I + G G + F
Sbjct: 88 DENGVAVIAGLIDASQKGDGFLYF 111
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 28.8 bits (65), Expect = 0.52
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 57 FCRIATHFLEEDDAEAMQEELKEAF------------RLYDREGNGYITTATLREILAAL 104
IATHF++ + ++E+L + + L E + +
Sbjct: 179 RAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKI 238
Query: 105 DDKLNPEDLDGIIQEIDTDGS 125
+ + ++ II+ + DGS
Sbjct: 239 NSCFSANTVEEIIENLQQDGS 259
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 28.4 bits (62), Expect = 0.68
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 1 MRKAFQMFDTAKTGFIDTLKISTILNTMGQL--FDDTELQALIDENDPDATGKVNFDGFC 58
R + K K + ++ +ND +FD F
Sbjct: 160 FRLTTVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFF 219
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREIL------AALDDKLNPED 112
+ LE + E++ F+ + G ITT R+ L +L L P
Sbjct: 220 KFYLALLE-------RSEIEGIFKELSKNK-GNITTVMFRDFLNDMQRHPSLHKTLFPLY 271
Query: 113 LDGIIQEI 120
D + +
Sbjct: 272 TDAQCEAL 279
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 28.1 bits (62), Expect = 1.1
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 73 MQEELKEAFRLYDREG--NGYITTATLREILAALDDKLNPEDLDGIIQEIDTDG 124
M++ + +L G GY+T A + + L +D ++ + ++ IIQ I+ G
Sbjct: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLP--EDIVDSDQIEDIIQMINDMG 52
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 27.3 bits (60), Expect = 1.4
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 89 NGYITTATLREILAALDDKLNPEDLDGIIQEI 120
+G I+ + EI + ++ +++ G ++EI
Sbjct: 102 SGNISLDDVIEIARIMRNRSMAKEMAGTVKEI 133
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 26.7 bits (59), Expect = 1.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 97 LREILAALDDKLNPEDLDGIIQEIDTDGSGTVDFD 131
L+A D K L + ++ D + +DF
Sbjct: 39 FPNFLSACDKK-GTNYLADVFEKKDKNEDKKIDFS 72
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2,
MCSG, protein structur initiative; 1.91A {Vibrio
parahaemolyticus}
Length = 174
Score = 27.0 bits (60), Expect = 1.6
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 60 IATHFLEEDDAEAMQEELKEAFRLYDREGNGY--ITTATLREILAALD------DKLNPE 111
+ D + ++ KE + E +GY + L A+ + + +
Sbjct: 35 AIKPLYDSDVNGSNKQAAKEILKAMRFESDGYFFAYDSQGINTLHAIKPSLEGKNLYDLK 94
Query: 112 DLDG--IIQEIDT---DGSGTVDF 130
D +G +I + G G + F
Sbjct: 95 DENGVAVIAGLIDASQKGDGFLYF 118
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily,
SH3-like domain, produc structure, DNA damage, DNA
repair, exonuclease; HET: TMP; 1.50A {Escherichia coli}
SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A*
3hp9_A*
Length = 482
Score = 26.5 bits (57), Expect = 3.6
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 1/104 (0%)
Query: 20 KISTILNTMGQLFDDTELQALIDENDPDATGKVNFDGFCRIATHFLEEDDAEAMQEELKE 79
K+ I + A + + L D + + +++
Sbjct: 346 KVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEK 405
Query: 80 -AFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDT 122
F R G + A + L PE L G E+
Sbjct: 406 LLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQM 449
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA,
transcription, arrest, BACKTRACKING cleavage,
transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A
{Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S*
1enw_A
Length = 178
Score = 25.9 bits (56), Expect = 3.7
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 54 FDGFCRIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPE 111
+D + + H + A E E ++ + + N A R I + + K NP+
Sbjct: 26 YDVLAKESEHPPQSILHTAKAIE-SEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPD 82
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 25.6 bits (57), Expect = 5.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 97 LREILAALDDKLNPEDLDGI 116
L+ + +L +L+ + L I
Sbjct: 315 LKTNIESLHLELSEDVLAEI 334
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 25.8 bits (56), Expect = 5.5
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 59 RIATHFLEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDD 106
R + + + E M+ L+ + A +E AL+
Sbjct: 16 RGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALEL 63
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 8.0
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 65 LEEDDA--EAMQEELKEAFR 82
L+E DA + M++E +E +
Sbjct: 98 LQELDAASKVMEQEWREKAK 117
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 25.3 bits (54), Expect = 8.3
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 65 LEEDDAEAMQEELKEAFRLYDREGNGYITTATLREILAALDDKLNPEDLDGIIQEIDT 122
E + ++ KEA Y ++ + + D ++ + +E+
Sbjct: 73 EAERIEQKLERSEKEALESYKKDSVEI--SKYSQTRNYFYDYQIEANSREKEYKELRN 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.386
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,230,121
Number of extensions: 137730
Number of successful extensions: 1559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 395
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)