BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3156
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 247/523 (47%), Gaps = 56/523 (10%)
Query: 9 GNVFPNDSKSFVDLKLKQPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWS 68
+FP D K+F D +ILA +R + N + D L +FVN F E + +
Sbjct: 24 AKLFP-DQKTFADAVPNSDPLMILADYR-MQQNQSGFD---LRHFVNVNFTLPKEGEKYV 78
Query: 69 PPDFTSNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIP 128
PP+ S ++ +W L R + + SL+ P + +P
Sbjct: 79 PPEGQS---------------LREHIDGLWPVLTR----STENTEKWDSLLPLPEPYVVP 119
Query: 129 GGRFRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPP 188
GGRFRE+YYWD+Y+ + G+ D ++ N +D +G +PNG R YYL RSQPP
Sbjct: 120 GGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPP 179
Query: 189 LLIPMAASYAKYTGDTNFIRTHLKSLTNEFEYWM----------KRHMVTVEKNGKYYTM 238
M A++ GD ++ +L + E+ YWM + V ++G +
Sbjct: 180 FFALMVELLAQHEGDA-ALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTL--L 236
Query: 239 ARYYAPSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSN 298
RY+ PRPES+ ED A +Y +L++ A +GWDFSSRW N
Sbjct: 237 NRYWDDRDTPRPESWVEDIATAKS-NPNRPATEIYRDLRSAAASGWDFSSRWM-----DN 290
Query: 299 RGGLKYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLW 358
L +RTTSI+PVDLN+++ L+ G+ ++ +Y+ +A + I + LW
Sbjct: 291 PQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLW 350
Query: 359 NEQVGVWLDYDIKNKKPRNYFYVSNITPLWTLSYKFSKQYVAERVLQYLRDNEIITKDNQ 418
N+Q G + DYD+K+ K RN + + PL YV TK +
Sbjct: 351 NDQQGWYADYDLKSHKVRNQLTAAALFPL----------YVNAAAKDRANKMATATKTHL 400
Query: 419 VKFYGTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMG 478
++ G T+ S QQWD PN WAPLQ +GL Q+ K+VA ++ +L
Sbjct: 401 LQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGL---QNYGQKEVAMDISWHFLTNVQHT 457
Query: 479 YETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 521
Y+ K + EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 458 YDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 500
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 235/523 (44%), Gaps = 56/523 (10%)
Query: 9 GNVFPNDSKSFVDLKLKQPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWS 68
+FP D K+F D ILA +R + L +FVN F E + +
Sbjct: 24 AKLFP-DQKTFADAVPNSDPLXILADYRXQQNQSG----FDLRHFVNVNFTLPKEGEKYV 78
Query: 69 PPDFTSNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIP 128
PP+ S ++ +W L R + + SL+ P + +P
Sbjct: 79 PPEGQS---------------LREHIDGLWPVLTR----STENTEKWDSLLPLPEPYVVP 119
Query: 129 GGRFRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPP 188
GGRFRE+YYWD+Y+ G+ D + N +D +G +PNG R YYL RSQPP
Sbjct: 120 GGRFREVYYWDSYFTXLGLAESGHWDKVADXVANFAHEIDTYGHIPNGNRSYYLSRSQPP 179
Query: 189 LLIPMAASYAKYTGDTNFIRTHLKSLTNEFEYW----------MKRHMVTVEKNGKYYTM 238
A++ GD ++ +L E+ YW + V ++G +
Sbjct: 180 FFALXVELLAQHEGDA-ALKQYLPQXQKEYAYWXDGVENLQAGQQEKRVVKLQDGTL--L 236
Query: 239 ARYYAPSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSN 298
RY+ PRPES+ ED A +Y +L++ A +GWDFSSRW N
Sbjct: 237 NRYWDDRDTPRPESWVEDIATAKS-NPNRPATEIYRDLRSAAASGWDFSSRWX-----DN 290
Query: 299 RGGLKYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLW 358
L +RTTSI+PVDLN++ L+ G+ + +Y+ +A + I + LW
Sbjct: 291 PQQLNTLRTTSIVPVDLNSLXFKXEKILARASKAAGDNAXANQYETLANARQKGIEKYLW 350
Query: 359 NEQVGVWLDYDIKNKKPRNYFYVSNITPLWTLSYKFSKQYVAERVLQYLRDNEIITKDNQ 418
N+Q G + DYD+K+ K RN + + PL YV TK +
Sbjct: 351 NDQQGWYADYDLKSHKVRNQLTAAALFPL----------YVNAAAKDRANKXATATKTHL 400
Query: 419 VKFYGTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMG 478
++ G T+ S QQWD PN WAPLQ +GL Q+ K+VA ++ +L
Sbjct: 401 LQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGL---QNYGQKEVAXDISWHFLTNVQHT 457
Query: 479 YETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 521
Y+ K + EKYDV G G GGEY Q GFGWTNG + L+
Sbjct: 458 YDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKXLD 500
>pdb|2GAU|A Chain A, Crystal Structure Of Transcriptional Regulator, Crp/fnr
Family From Porphyromonas Gingivalis (apc80792),
Structural Genomics, Mcsg
Length = 232
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 189 LLIPMAASYAKYTGDTNFIRTHLKSLTNEFEYWMKRHMVTVEKN 232
L IP+ A A G+T+F R LK+L E Y +R + +K+
Sbjct: 109 LAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKH 152
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 22 LKLKQPEDVILAKFRALLTNNADPDTTTLTNFV---NEYFEAGNELQVWSPPDFTSNPS 77
++L+ + +L L++N D D+ T T V NE A EL V PP F ++PS
Sbjct: 262 IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS 320
>pdb|3E61|A Chain A, Crystal Structure Of A Putative Transcriptional
Repressor Of Ribose Operon From Staphylococcus
Saprophyticus Subsp. Saprophyticus
pdb|3E61|B Chain B, Crystal Structure Of A Putative Transcriptional
Repressor Of Ribose Operon From Staphylococcus
Saprophyticus Subsp. Saprophyticus
Length = 277
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 3 QKCKVIGNVFPNDSKSFVDLKLKQPEDVILAKFRALLTNNADPD 46
+K K+IG + P+ S F L + EDV LA +L N+D D
Sbjct: 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDND 49
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 341 KYKKIAYQLLEAIHEVLWNEQVGVWLDYDIKNKKPRNYFYVSNITPLWTLSYKFSKQYVA 400
++ K+ + LL+ +H+ + W D D P V WTL F QY
Sbjct: 229 RFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY-FWTLGVYFEPQYSQ 287
Query: 401 ERVLQYLRDNEIITKDNQVKFYGTPTSL---FNSTQQWD 436
RV+ + I D+ YGT L ++ Q+WD
Sbjct: 288 ARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD 326
>pdb|2WVY|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 737
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 21/76 (27%)
Query: 108 DVRDNPQLYS---------LIYTPNGFFIPGGRFRELYYWDTYWIVQGILLCDMKDSARG 158
D + NP YS +YT NGF WDT+ V + + +
Sbjct: 305 DSQGNPVYYSPYDGNVHDGYMYTDNGF------------WDTFRAVHPLFTLLYPEVSER 352
Query: 159 VIENIISLVDQFGFMP 174
V ++II+ ++ GFMP
Sbjct: 353 VTQSIINAYNESGFMP 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,651,085
Number of Sequences: 62578
Number of extensions: 857386
Number of successful extensions: 2060
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 32
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)