RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3156
(557 letters)
>gnl|CDD|216362 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.28) is known
to recycle trehalose to glucose. Trehalose is a
physiological hallmark of heat-shock response in yeast
and protects of proteins and membranes against a variety
of stresses. This family is found in conjunction with
pfam07492 in fungi.
Length = 509
Score = 545 bits (1406), Expect = 0.0
Identities = 231/516 (44%), Positives = 305/516 (59%), Gaps = 15/516 (2%)
Query: 14 NDSKSFVDLKLKQPEDVILAKFRALLTN-NADPDTTTLTNFVNEYF-EAGNELQVWSPPD 71
DSK+FVD+ LK + IL FRA + L FV++ F E G+EL+++ PPD
Sbjct: 4 PDSKTFVDMPLKNDPNRILRLFRAQFWDLTRRITGFDLRAFVDDNFDEPGDELRIYVPPD 63
Query: 72 FTSNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGGR 131
+ P KI D R +A L+ +W L R VK+ V P+ SL+ PN F +PGGR
Sbjct: 64 WKEQPEFLAKIEDPSLRLWAEHLHALWPALVRKVKKKVGLLPEASSLLPVPNPFVVPGGR 123
Query: 132 FRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLLI 191
FRE YYWD+YWI+ G+L M D+ARG++EN I L+D++GF+PNG R YYL RSQPP L
Sbjct: 124 FREFYYWDSYWIILGLLASGMHDTARGMVENFIYLIDKYGFIPNGNRSYYLNRSQPPFLT 183
Query: 192 PMAASYAKYTGDTNFIRTHLKSLTNEFEYWM-KRHMVTVEKNGKYYTMARYYAPSRGPRP 250
M Y + T D +R +L +L E+ +WM + + V Y + RY P PRP
Sbjct: 184 LMVLLYYEKTEDDALVRRYLPALKKEYAFWMAEPRLDPVTGLSDGYLLNRYGDPPETPRP 243
Query: 251 ESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGLKYIRTTSI 310
ESYRED A L TE K + Y +LK+ AE+GWDFSSRWF G + G L IRTTSI
Sbjct: 244 ESYREDVETAEKLPTERPKAYNYRDLKSAAESGWDFSSRWFRD-SGHDTGYLSSIRTTSI 302
Query: 311 IPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQVGVWLDYDI 370
+PVDLNA+L N ++ ++ G+ + SA +++ A +AI + LWNE+ G+W DYD+
Sbjct: 303 VPVDLNALLYKNEKIIAFFYDVLGDSETSAIWEERAEARRDAIDKYLWNEEDGIWYDYDL 362
Query: 371 KNKKPRNYFYVSNITPLWTLSYKFSKQYVAERVLQYLRDNEIITKDNQVKFYGTPTSLFN 430
K +K RNYF SN PLW + +VL YL + ++ G PTSL
Sbjct: 363 KKQKHRNYFSASNFVPLWAGLASPDQAAKVAKVLPYLERSGLLVYP-----GGIPTSLLK 417
Query: 431 STQQWDYPNAWAPLQAFIIQGLD-YTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKY 489
S QQWDYPN WAPLQ ++GL Y D+LA+ RLA +WLFTN + + M EKY
Sbjct: 418 SGQQWDYPNGWAPLQHLAVEGLRRYGYDELAE----RLAYRWLFTNTKAFVDTGKMVEKY 473
Query: 490 DVELIGKTGN-GGEYEAQTGFGWTNGFAFELLNRYG 524
DV G+ GN GGEY Q GFGWTNG +LL+ YG
Sbjct: 474 DVTRGGEYGNGGGEYVVQEGFGWTNGVYLDLLDLYG 509
>gnl|CDD|215307 PLN02567, PLN02567, alpha,alpha-trehalase.
Length = 554
Score = 475 bits (1225), Expect = e-163
Identities = 214/532 (40%), Positives = 304/532 (57%), Gaps = 37/532 (6%)
Query: 15 DSKSFVDLKLKQPEDVILAKFRALLTNNAD--PDTTTLTNFVNEYFE-AGNELQVWSPPD 71
D K +VDL LK F AL +N + L FV EYF+ AG++L ++PPD
Sbjct: 29 DPKLYVDLPLKFSLSETEKAFDALPRSNINGSVPVEELEEFVAEYFDVAGSDLLPYTPPD 88
Query: 72 FTSNPS-IENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGG 130
F P K+ + + R++AL ++ +WK L R V V + P ++L+ PN +PG
Sbjct: 89 FVPEPPGFLPKVENPEAREWALKVHSLWKNLARKVSDSVEERPDRHTLLPLPNPVVVPGS 148
Query: 131 RFRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLL 190
RFRE+YYWD+YW+++G+L M ++A+GV+EN++ LVD +GF+PNGAR YY RSQPPLL
Sbjct: 149 RFREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLVDTYGFVPNGARAYYTNRSQPPLL 208
Query: 191 IPMAASYAKYTGDTNFIRTHLKSLTNEFEYWMK-RHMVTV-EKNGKYYTMARYYAPSRGP 248
M + T D +R L +L E +W RH VT+ + NG + ++RYYA P
Sbjct: 209 SAMVLAVYAATKDVELVRRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWDKP 268
Query: 249 RPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGLKYIRTT 308
RPES R D A+ + EK LY ++ + AE+GWDFSSRW RDGSN L +RTT
Sbjct: 269 RPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWM--RDGSN---LTTLRTT 323
Query: 309 SIIPVDLNA-ILQMNAN--YLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQVGVW 365
SI+PVDLNA +L+M + + ++ G+K + ++ K A AI+ VLWNE++G W
Sbjct: 324 SILPVDLNAFLLKMELDIAFFAK---LLGDKATAERFLKAAKARKRAINAVLWNEEMGQW 380
Query: 366 LDYDIKN----KKPRNYF---------YVSNITPLWTLSYKFSKQYVAERVLQYLRDNEI 412
LDY + + + Y SN PLW E+V++ L+ + +
Sbjct: 381 LDYWLPPNGATCQESYTWDAENQNTNVYASNFVPLWCGVVP-PGDAKVEKVVESLKSSGL 439
Query: 413 ITKDNQVKFYGTPTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWL 472
+ G TSL N+ QQWD+PNAWAPLQ I++GL + K K +A +A +WL
Sbjct: 440 VLPA------GIATSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKEGKALAEDIARRWL 493
Query: 473 FTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 524
+NY+ Y+ + AM EKYD G+ G GGEY QTGFGW+NG LL +G
Sbjct: 494 RSNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEFG 545
>gnl|CDD|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and
metabolism].
Length = 558
Score = 287 bits (737), Expect = 4e-90
Identities = 158/450 (35%), Positives = 219/450 (48%), Gaps = 39/450 (8%)
Query: 89 QFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNG-FFIPGGRFRELYYWDTYWIVQGI 147
++Q+W L R +V D P+ SL+ P + +PGGRF ELYYWD+Y+ + G+
Sbjct: 129 SLYEHIDQLWPALTR----EVEDLPKESSLLPLPGYPYVVPGGRFNELYYWDSYFTMLGL 184
Query: 148 LLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLLIPMAASYAKYTGDTNFI 207
D A+G+++N ++ +G +PNG R YYL RSQPP M A++ G
Sbjct: 185 AESGRWDLAKGMVDNFAYEIETYGHIPNGNRTYYLSRSQPPFFALMVELVAEHEGVAALK 244
Query: 208 RTHLKSLTNEFEYWMK-----------RHMVTVEKNGKYYTMARYYAPSRGPRPESYRED 256
R L +L E+ YWM +VT+ + RY+ PR ESY E
Sbjct: 245 RY-LPALIKEYAYWMDGVPSLQPKQGYSRVVTLGDGSPPEVLNRYWDDRDTPRQESYHET 303
Query: 257 YHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGLKYIRTTSIIPVDLN 316
A Y + +AG E+GWDFSSRW L IRTTSI+PVDLN
Sbjct: 304 IATAKHNPERPLDEI-YRDDRAGRESGWDFSSRWL-----GVPAPLASIRTTSILPVDLN 357
Query: 317 AILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQVGVWLDYDIKNKKPR 376
A+L ++ G+K+ + +Y++ A AI++ LW+++ G + DYD K KK R
Sbjct: 358 ALLYKLEEIIANISAIKGDKETAERYQRKAEARRCAINKYLWDDEAGQYNDYDWKLKKRR 417
Query: 377 NYFYVSNITPLWT-LSYKFSKQYVAERVLQYLRDNEIITKDNQVKFYGTPTSLFNSTQQW 435
Y + + PLW L+ Q +A+ L L + G S S QQW
Sbjct: 418 AYLSAAALWPLWVGLATPERAQRLADAALSML-EQPG----------GLSASTPRSGQQW 466
Query: 436 DYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDV-ELI 494
DYPN WAPLQ QGL + +A +A +WL Y+ + EKYDV
Sbjct: 467 DYPNGWAPLQWIATQGL---KRYGYDILADDIARRWLTNVEQFYDYEGKLVEKYDVSRGT 523
Query: 495 GKTGNGGEYEAQTGFGWTNGFAFELLNRYG 524
G G GGEY Q GFGWTNG +LL+ YG
Sbjct: 524 GPGGGGGEYPLQDGFGWTNGVVLKLLDLYG 553
>gnl|CDD|183936 PRK13272, treA, trehalase; Provisional.
Length = 542
Score = 255 bits (653), Expect = 5e-78
Identities = 173/526 (32%), Positives = 241/526 (45%), Gaps = 66/526 (12%)
Query: 14 NDSKSFVD-LKLKQPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPPDF 72
+D K FVD L L+ P A A + L FV+ FE SPP
Sbjct: 63 DDQKHFVDALPLRDP-----ALINADYLAQHEHPGFDLRKFVDANFEE-------SPPVQ 110
Query: 73 TSNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGGRF 132
T D R+ L W +L R +Q P SL+ P+ + +PGGRF
Sbjct: 111 TDAIR-----QDTALREHIDAL---WPKLVRSQEQ----VPAHSSLLALPHPYVVPGGRF 158
Query: 133 RELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLLIP 192
RE+YYWD+Y+ + G++ +R +++N L+D +G +PNG R YYL RSQPP
Sbjct: 159 REVYYWDSYFTMLGLVKSGQTTLSRQMLDNFAYLIDTYGHIPNGNRTYYLSRSQPPFFSY 218
Query: 193 MAASYAKYTGDTNFIRTHLKSLTNEFEYWM-----------KRHMVTVEKNGKYYTMARY 241
M A GD + R +L L E+ YWM RH+V + + RY
Sbjct: 219 MVELQAGVEGDAAYQR-YLPQLQKEYAYWMQGSDDLQPGQAARHVVRLADGS---LLNRY 274
Query: 242 YAPSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGG 301
+ PRPE++ D AA+ + +Y +L+AGAE+GWD+SSRW DG
Sbjct: 275 WDERDTPRPEAWLHDTRTAAEAKDRPAAE-VYRDLRAGAESGWDYSSRWL--ADGKT--- 328
Query: 302 LKYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQ 361
L IRTT+I+PVDLN++L L++ G S Y +A Q +AI LWN
Sbjct: 329 LASIRTTAIVPVDLNSLLYHLERTLAQACASSGLAACSQDYAALAQQRKQAIDAHLWNP- 387
Query: 362 VGVWLDYDIKNKKPRNYFYVSNITPLWT--LSYKFSKQYVAERVLQYLRDNEIITKDNQV 419
G + DYD + + + + PL+ S +K+ Q LR
Sbjct: 388 AGYYADYDWQTRTLSEQVTAAALYPLFAGLASDDRAKRTADSVRAQLLRPG--------- 438
Query: 420 KFYGTPTSLFNSTQQWDYPNAWAPLQAFIIQGLD-YTQDKLAKQVAYRLAEKWLFTNYMG 478
G T+ + QQWD PN WAPLQ + GL Y +D LA+ + E++L
Sbjct: 439 ---GLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGEDALAR----TIGERFLAQVQAL 491
Query: 479 YETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 524
+ + EKY ++ G GGEY Q GFGWTNG LLN Y
Sbjct: 492 FAREHKLVEKYGLDGNAAGGGGGEYALQDGFGWTNGVTLMLLNLYP 537
>gnl|CDD|237326 PRK13271, treA, trehalase; Provisional.
Length = 569
Score = 254 bits (651), Expect = 1e-77
Identities = 168/520 (32%), Positives = 254/520 (48%), Gaps = 54/520 (10%)
Query: 11 VFPNDSKSFVDLKLKQPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPP 70
+FP D K+F D +ILA +R + N + D L +FVN F E + + PP
Sbjct: 60 LFP-DQKTFADAVPNSDPLMILADYR-MQQNQSGFD---LRHFVNVNFTLPKEGEKYVPP 114
Query: 71 DFTSNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGG 130
S+ I + +W L R + + + SL+ P + +PGG
Sbjct: 115 ---EGQSLREHI------------DGLWPVLTRSTENTEKWD----SLLPLPEPYVVPGG 155
Query: 131 RFRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLL 190
RFRE+YYWD+Y+ + G+ D ++ N +D +G +PNG R YYL RSQPP
Sbjct: 156 RFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTWGHIPNGNRSYYLSRSQPPFF 215
Query: 191 IPMAASYAKYTGDTNFIRTHLKSLTNEFEYWMK--RHMVTVEKNGKYYTMA------RYY 242
M A++ GD ++ +L + E+ YWM+ ++ ++ + + RY+
Sbjct: 216 ALMVELLAQHEGDAA-LKQYLPQMQKEYAYWMEGVENLQPGQQEKRVVKLQDGTLLNRYW 274
Query: 243 APSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGL 302
PRPES+ ED A +Y +L++ A +GWDFSSRW N L
Sbjct: 275 DDRDTPRPESWVEDIATAKS-NPNRPATEIYRDLRSAAASGWDFSSRWM-----DNPQQL 328
Query: 303 KYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQV 362
IRTTSI+PVDLNA++ L+ G+ ++ +Y+ +A +AI + LWN++
Sbjct: 329 NTIRTTSIVPVDLNALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKE 388
Query: 363 GVWLDYDIKNKKPRNYFYVSNITPLWTLSYKFSKQYVAERVLQYLRDNEIITKDNQVKFY 422
G + DYD+K+ K RN + + PL+ + + A +V TK + ++
Sbjct: 389 GWYADYDLKSHKVRNQLTAAALFPLYV---NAAAKDRANKV-------AAATKTHLLQPG 438
Query: 423 GTPTSLFNSTQQWDYPNAWAPLQAFIIQGL-DYTQDKLAKQVAYRLAEKWLFTNYMGYET 481
G T+ S QQWD PN WAPLQ +GL +Y Q ++A V +R T Y+
Sbjct: 439 GLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDVTWRFLTNVQHT----YDR 494
Query: 482 SKAMFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLN 521
K + EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 495 EKKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLD 534
>gnl|CDD|183934 PRK13270, treF, trehalase; Provisional.
Length = 549
Score = 237 bits (605), Expect = 6e-71
Identities = 157/524 (29%), Positives = 245/524 (46%), Gaps = 64/524 (12%)
Query: 15 DSKSFVDLKLK-QPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPPDFT 73
DSK+F D K P D+++ + + D L FV +F +V+S +
Sbjct: 74 DSKTFPDCAPKMDPLDILIRYRKVRRHRDFD-----LRKFVENHFWLP---EVYSSE-YV 124
Query: 74 SNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGGRFR 133
S+P ++Q+W L R + +D+ SL+ P + +PGGRF
Sbjct: 125 SDPQ----------NSLKEHIDQLWPVLTR----EPQDHIPWSSLLALPQSYIVPGGRFS 170
Query: 134 ELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLLIPM 193
E YYWD+Y+ + G+ +D + + +N +++ +G +PNG R YYL RSQPP+ M
Sbjct: 171 ETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALM 230
Query: 194 AASYAKYTGDTNFIRTHLKSLTNEFEYWMK-----------RHMVTVEKNGKYYTMARYY 242
+ + R +L L E+ +WM RH+V + + RY+
Sbjct: 231 VELFEE--DGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGS---LLNRYW 285
Query: 243 APSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGL 302
PR ES+ ED A + N +Y +L+AGA +GWD+SSRW + G L
Sbjct: 286 DDRDTPRDESWLEDVETAK--HSGRPPNEVYRDLRAGAASGWDYSSRWL-----RDTGRL 338
Query: 303 KYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQV 362
IRTT IP+DLNA L + ++ G K+ A +++ A +A++ LW+++
Sbjct: 339 ASIRTTQFIPIDLNAFLYKLESAIANISALKGEKETEALFRQKASARRDAVNRYLWDDEN 398
Query: 363 GVWLDYDIKNKKPRNYFYVSNITPLWTLSYKFSKQYVAERVLQYLRDNEIITKDNQVKFY 422
G++ DYD + ++ F + I PL+ + A+R+ +R +
Sbjct: 399 GIYRDYDWRREQ-LALFSAAAIVPLYV---GMANHEQADRLANAVRSRLLTPG------- 447
Query: 423 GTPTSLFNSTQQWDYPNAWAPLQAFIIQGL-DYTQDKLAKQVAYRLAEKWLFTNYMGYET 481
G S + + +QWD PN WAPLQ IQG Y D L ++A WL T Y+
Sbjct: 448 GILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARS----WLKTVNQFYQE 503
Query: 482 SKAMFEKYDVE-LIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 524
+ EKY + + + G GGEY Q GFGWTNG L+ YG
Sbjct: 504 HHKLIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYG 547
>gnl|CDD|225942 COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport
and metabolism].
Length = 641
Score = 43.2 bits (102), Expect = 4e-04
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 10/132 (7%)
Query: 101 LGRIVKQDVRDNPQLYSLIYTPNGFFI---PGGRFRELYYWDTYWIVQGILLCDMKDSAR 157
L ++ D +L + P + + DT G+LL + AR
Sbjct: 247 LNEAFRRAKADLLELTTSTGETGPGLYAGLPIAHWFSPFGRDTLISALGLLLVGRFELAR 306
Query: 158 GVIENIISLVDQFGFMPN------GARVYYLERSQPPLLIPMAASYAKYTGDTNFIRTHL 211
G + N ++ + G +P+ YY PL I + +Y KYTGDT FIR
Sbjct: 307 GTL-NTLARYSEPGKIPHEILLSIPGEPYYNTVDATPLFIYLLGAYLKYTGDTEFIRELW 365
Query: 212 KSLTNEFEYWMK 223
S+ ++ +K
Sbjct: 366 PSVGAALDWILK 377
>gnl|CDD|216429 pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2 &
3. Aldehyde ferredoxin oxidoreductase (AOR) catalyzes
the reversible oxidation of aldehydes to their
corresponding carboxylic acids with their accompanying
reduction of the redox protein ferredoxin. This family
is composed of two structural domains that bind the
tungsten cofactor via DXXGL(C/D) motifs. In addition to
maintaining specific binding interactions with the
cofactor, another role for domains 2 and 3 may be to
regulate substrate access to AOR.
Length = 382
Score = 31.4 bits (72), Expect = 1.3
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 495 GKTGNGGEYEAQTGFGWTNG--------FAFELLNRYG-KTISFNNT 532
G G G EYE G G A L N YG TIS NT
Sbjct: 87 GGEGEGPEYETLAALGSNLGIDDLEAVLKANRLCNDYGLDTISTGNT 133
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 31.2 bits (71), Expect = 1.3
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 4/80 (5%)
Query: 36 RALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPPDFTSNPSIE----NKISDAKYRQFA 91
+ L + + F AG + D K +QF
Sbjct: 23 KELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQQFK 82
Query: 92 LDLNQIWKELGRIVKQDVRD 111
+ ++ + L + V D
Sbjct: 83 KLIRELLELLRELEPDLVVD 102
>gnl|CDD|153348 cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 2. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX2 is a component of the retromer
complex, a membrane coat multimeric complex required for
endosomal retrieval of lysosomal hydrolase receptors to
the Golgi. The retromer consists of a cargo-recognition
subcomplex and a subcomplex formed by a dimer of sorting
nexins (SNX1 and/or SNX2), which ensures effcient cargo
sorting by facilitating proper membrane localization of
the cargo-recognition subcomplex. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 234
Score = 28.9 bits (64), Expect = 7.0
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 59 EAGNELQVWSPPDFTSNPSIENKISDAKYRQFALDLNQIWK----ELGRIVKQDVRD 111
EA +LQ + PD E K +AK +Q D QI K E+GR K+ V+D
Sbjct: 147 EAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 203
>gnl|CDD|236653 PRK10137, PRK10137, alpha-glucosidase; Provisional.
Length = 786
Score = 29.0 bits (65), Expect = 9.3
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 313 VDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQVGVWLDYDIK- 371
VD + + + +YL+E G + + +Y+++A QL + I+ +++E G + YD++
Sbjct: 578 VDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFY--YDVRI 635
Query: 372 NKKP 375
KP
Sbjct: 636 EDKP 639
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,233,363
Number of extensions: 2902248
Number of successful extensions: 2571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2527
Number of HSP's successfully gapped: 23
Length of query: 557
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 455
Effective length of database: 6,413,494
Effective search space: 2918139770
Effective search space used: 2918139770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)