RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3156
(557 letters)
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 410 bits (1055), Expect = e-139
Identities = 159/520 (30%), Positives = 236/520 (45%), Gaps = 53/520 (10%)
Query: 14 NDSKSFVDLKLKQPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPPDFT 73
D K+F D +ILA +R + L +FVN F E + + PP+
Sbjct: 22 PDQKTFADAVPNSDPLMILADYRMQ----QNQSGFDLRHFVNVNFTLPKEGEKYVPPEG- 76
Query: 74 SNPSIENKISDAKYRQFALDLNQIWKELGRIVKQDVRDNPQLYSLIYTPNGFFIPGGRFR 133
+ ++ +W L R + + SL+ P + +PGGRFR
Sbjct: 77 --------------QSLREHIDGLWPVLTRSTENT----EKWDSLLPLPEPYVVPGGRFR 118
Query: 134 ELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMPNGARVYYLERSQPPLLIPM 193
E+YYWD+Y+ + G+ D ++ N +D +G +PNG R YYL RSQPP M
Sbjct: 119 EVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALM 178
Query: 194 AASYAKYTGDTNFIRTHLKSLTNEFEYWMKRHMVT--------VEKNGKYYTMARYYAPS 245
A++ GD ++ +L + E+ YWM V K + RY+
Sbjct: 179 VELLAQHEGDA-ALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDR 237
Query: 246 RGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNRGGLKYI 305
PRPES+ ED A +Y +L++ A +GWDFSSRW N L +
Sbjct: 238 DTPRPESWVEDI-ATAKSNPNRPATEIYRDLRSAAASGWDFSSRWM-----DNPQQLNTL 291
Query: 306 RTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAIHEVLWNEQVGVW 365
RTTSI+PVDLN+++ L+ G+ ++ +Y+ +A + I + LWN+Q G +
Sbjct: 292 RTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWY 351
Query: 366 LDYDIKNKKPRNYFYVSNITPLWT-LSYKFSKQYVAERVLQYLRDNEIITKDNQVKFYGT 424
DYD+K+ K RN + + PL+ + K +A +L G
Sbjct: 352 ADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQP-----------GGL 400
Query: 425 PTSLFNSTQQWDYPNAWAPLQAFIIQGLDYTQDKLAKQVAYRLAEKWLFTNYMGYETSKA 484
T+ S QQWD PN WAPLQ +GL K+VA ++ +L Y+ K
Sbjct: 401 NTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHTYDREKK 457
Query: 485 MFEKYDVELIGKTGNGGEYEAQTGFGWTNGFAFELLNRYG 524
+ EKYDV G G GGEY Q GFGWTNG ++L+
Sbjct: 458 LVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLIC 497
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio
proteolyticus [TaxId: 671]}
Length = 531
Score = 36.0 bits (82), Expect = 0.012
Identities = 27/264 (10%), Positives = 68/264 (25%), Gaps = 28/264 (10%)
Query: 115 LYSLIYTPNGFFIPGGRFRELYYWDTYWIVQGILLCDMKDSARGVIENIISLVDQFGFMP 174
++++ FI G L Y DT + + + R I +++ + G+
Sbjct: 56 ETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHAN-PEMTRKRIVDLLRGQVKAGYGL 114
Query: 175 NGARVY---YLERSQPPLLIPMAASYAKYTGDTNFIRTHLKSLTNEFEYWMKRHMVTVEK 231
+ + P P + I+ + +++
Sbjct: 115 HLFDPDWFDPEKEDVAPSKSPTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYV----- 169
Query: 232 NGKYYTMARYYAPSRGPRPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWF 291
T + P + +E + ++ + +
Sbjct: 170 ---METGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGI--CKGLRADWNDCL 224
Query: 292 IARDGSNRGGLKYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLE 351
G + ++ + + G Y ++A + E
Sbjct: 225 NLGGGES--------------SMVSFLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVRE 270
Query: 352 AIHEVLWNEQVGVWLDYDIKNKKP 375
A LW+++ G ++ KN
Sbjct: 271 ACETHLWDDEGGWYIRGLTKNGDK 294
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 30.9 bits (70), Expect = 0.33
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 8/122 (6%)
Query: 158 GVIENIISLVDQFGFMPN--GARVYYLERSQPPLLIPMAASYAKYTGDTNFIRTHLKSLT 215
G ++ + + F+ N V Y+E S + A Y + T L +L+
Sbjct: 39 GEYKDFLEIAQIPTFIGNKVPNAVPYIEASNTAVKTQPLAVYQVTLSCSCLANTFLAALS 98
Query: 216 NEFEYWMKRHMVTVEKNGKYYTMARY---YAPSRGPRPESYRED---YHEAADLQTEDEK 269
F + + T G ++ Y P +P S + + DL
Sbjct: 99 RNFAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSY 158
Query: 270 NF 271
+F
Sbjct: 159 SF 160
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 319
Score = 28.5 bits (63), Expect = 1.9
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 62 NELQVWSPPDFTSNPS-IENKISDAKYRQFALDLNQIWKELGRIVKQDVRD 111
N + + P D T+NPS I Y++ + K+LG ++ +++
Sbjct: 20 NAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKN 70
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 28.6 bits (64), Expect = 2.2
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 301 GLKYIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLS-------AKYKKIAYQLLEAI 353
G K I T I N ++ E +L FG DL+ + I
Sbjct: 222 GAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKI 281
Query: 354 HEVLWNEQVGVWLDYDIKNKKPRNYFYVSNITPLWTLSY-KFSKQY 398
L QV L K+ Y + + +++++ KF+ +
Sbjct: 282 ASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINKFNDIF 327
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 28.3 bits (63), Expect = 2.6
Identities = 15/62 (24%), Positives = 20/62 (32%)
Query: 453 DYTQDKLAKQVAYRLAEKWLFTNYMGYETSKAMFEKYDVELIGKTGNGGEYEAQTGFGWT 512
D Q + A W TN G K+ L+G+T E A +
Sbjct: 125 DTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQ 184
Query: 513 NG 514
NG
Sbjct: 185 NG 186
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 27.4 bits (61), Expect = 2.9
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 249 RPESYREDYHEAADLQTEDEKNFLYSELKAGAETGWDFSSRWFIARDGSNR-----GGLK 303
P+ R + Q E+NF E+ R +I + + L+
Sbjct: 14 HPDDKRPIHRREPLAQVVGERNFTLLEVSIRKGKQPLVMDRVYIGKGERDVVYKIKRRLR 73
Query: 304 YIRTTSIIPVDLNAILQMNANYLSEWWLKFGNKDLSAKYKKIAYQLLEAI 353
Y T +L +++ + ++ F NK S + +LL +
Sbjct: 74 YEDLTPAAKTELPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGV 123
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 27.8 bits (61), Expect = 3.8
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 62 NELQVWSPPDFTSNPSIENK-ISDAKYRQFALDLNQIWKELGRIVKQDVRD-NPQLYSLI 119
++++ P D T+NPS+ +YR+ D K+ Q + D +L I
Sbjct: 21 AAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNI 80
Query: 120 YTPNGFFIPGGRFREL---YYWDTY-WIVQGILLCDMKDSARGVIENII 164
+PG E+ +DT I + L + + A + I+
Sbjct: 81 GLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRIL 129
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 28.1 bits (61), Expect = 3.9
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 26 QPEDVILAKFRALLTNNADPDTTTLTNFVNEYFEAGNELQVWSPPDFTSNPSIENKISDA 85
+P++ L + LL + PDTT + + + + + K D
Sbjct: 4 KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNN---YLIFVLTKLKSEDE 60
Query: 86 KYRQFALDL--NQI---WKELGRIVKQDVRDN 112
R + + N + ++ V ++
Sbjct: 61 PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSE 92
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 27.1 bits (60), Expect = 5.5
Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 158 GVIENIISLVDQFGFMPNGARVYYLERSQPPLLIPMAASYAKYT----------GDTNFI 207
G + N++ + + MP S + ++ + T ++
Sbjct: 38 GEVRNLMEIAEVDSVMPINNDSAAKVSSMEAYRVELSTNTNAGTQVFGFQLNPGAESVMN 97
Query: 208 RTHLKSLTNEFEYWMKRHMVTVEKNGKYYTMARY---YAPSRGPRPESYRED---YHEAA 261
RT + + N + +W +T G T ++ YAP P++ ++ H
Sbjct: 98 RTLMGEILNYYAHWSGSIKITFVFCGSAMTTGKFLLSYAPPGAGAPKTRKDAMLGTHVVW 157
Query: 262 DLQTEDEKNF 271
D+ +
Sbjct: 158 DVGLQSSCVL 167
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG,
OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 115
Score = 26.0 bits (57), Expect = 5.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 312 PVDLNAILQMNANYLSEWWL 331
++ A L LSE W
Sbjct: 89 TTEMRAALVNADQTLSETWS 108
>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 236
Score = 26.3 bits (58), Expect = 8.2
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 158 GVIENIISLVDQFGFMP-------NGARVYYLERSQPPLLIPMAASYAKYTGDTNFIRTH 210
G + N++ ++ +P + Y + + + + GD F T
Sbjct: 38 GKVHNLLEIIQVDTLIPMNNTHTKDEVNSYLIPLNANRQNEQVFG-TNLFIGDGVFKTTL 96
Query: 211 LKSLTNEFEYWMKRHMVTVEKNGKYYTMARY---YAPSRGPRPESYRED---YHEAADLQ 264
L + + +W ++ G + A+ Y P P+ RE H D+
Sbjct: 97 LGEIVQYYTHWSGSLRFSLMYTGPALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIG 156
Query: 265 TEDEKNF 271
+
Sbjct: 157 LQSTIVM 163
>d1tme3_ b.121.4.1 (3:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 232
Score = 26.3 bits (58), Expect = 9.1
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 11/124 (8%)
Query: 158 GVIENIISLVDQFGFMP----NGARVYYLERSQPPLLIPMAASYAKYTGDTNFIRTHLKS 213
G +++ L F+ N R Y + + Y + + L +
Sbjct: 39 GEFSDLLELCKLPTFLGNPNSNNKRYPYFSATNSVPTTSLVD-YQVALSCSCMCNSMLAA 97
Query: 214 LTNEFEYWMKRHMVTVEKNGKYYTMARY---YAPSRGPRPESYRED---YHEAADLQTED 267
+ F + G ++ Y P +P + + + DL
Sbjct: 98 VARNFNQYRGSLNFLFVFTGAAMVKGKFLIAYTPPGAGKPTTRDQAMQATYAIWDLGLNS 157
Query: 268 EKNF 271
F
Sbjct: 158 SFVF 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,207,084
Number of extensions: 109259
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 22
Length of query: 557
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 467
Effective length of database: 1,171,896
Effective search space: 547275432
Effective search space used: 547275432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)