Query psy3157
Match_columns 822
No_of_seqs 585 out of 4282
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 17:52:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-27 5.3E-32 270.2 17.6 383 213-806 32-430 (451)
2 3o7q_A L-fucose-proton symport 99.9 4.5E-26 1.5E-30 257.3 24.1 166 213-379 30-226 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.9 1.3E-23 4.4E-28 241.4 32.3 172 213-385 17-199 (491)
4 2gfp_A EMRD, multidrug resista 99.9 2.4E-24 8.2E-29 238.5 13.9 173 213-387 4-179 (375)
5 4gc0_A D-xylose-proton symport 99.9 6.7E-21 2.3E-25 218.5 20.3 144 244-388 54-225 (491)
6 2xut_A Proton/peptide symporte 99.8 1.1E-20 3.8E-25 218.8 19.6 167 213-380 16-196 (524)
7 2cfq_A Lactose permease; trans 99.8 4.4E-22 1.5E-26 224.5 4.8 164 213-378 11-183 (417)
8 2i9s_A MESD, mesoderm developm 99.7 2.7E-18 9.1E-23 145.4 6.7 96 65-160 1-96 (97)
9 3ofg_A BOCA/MESD chaperone for 99.6 5E-16 1.7E-20 128.6 2.6 87 74-160 3-95 (95)
10 3ofh_A LDLR chaperone MESD; mo 99.6 9.4E-16 3.2E-20 127.3 4.3 88 73-160 2-89 (89)
11 3off_A LDLR chaperone BOCA; ME 99.6 1.2E-15 4.2E-20 127.1 3.7 87 73-159 3-89 (90)
12 2kgl_A Mesoderm development ca 99.6 1.9E-15 6.5E-20 143.5 5.3 109 54-162 48-156 (195)
13 1pw4_A Glycerol-3-phosphate tr 99.3 5.5E-11 1.9E-15 133.8 18.2 169 213-382 256-433 (451)
14 2cfq_A Lactose permease; trans 99.2 1.6E-10 5.3E-15 129.8 17.3 161 226-387 237-404 (417)
15 3o7q_A L-fucose-proton symport 99.2 6.2E-10 2.1E-14 124.8 20.4 162 213-377 262-427 (438)
16 4gc0_A D-xylose-proton symport 98.9 7.7E-08 2.6E-12 109.5 22.2 162 227-389 295-469 (491)
17 4aps_A DI-OR tripeptide H+ sym 98.8 4.2E-09 1.4E-13 120.2 9.1 167 218-386 292-475 (491)
18 2gfp_A EMRD, multidrug resista 98.5 4.2E-08 1.4E-12 107.7 2.6 153 214-369 204-363 (375)
19 2xut_A Proton/peptide symporte 98.2 5.8E-07 2E-11 103.3 5.1 169 587-805 14-194 (524)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.5e-27 Score=270.20 Aligned_cols=383 Identities=13% Similarity=0.096 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.........+.+|.+.+ ++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777776554 47 999999999999999999999999999999999999999999999999999
Q ss_pred Hh----hchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHH
Q psy3157 293 GL----YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG-FFYI 364 (822)
Q Consensus 293 ~~----a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w~~~ 364 (822)
++ +++++.++++|++.|++.+. .+...+++.|++|++ ++++|+...+..+|.++||++++++.+.. | ||+.
T Consensus 110 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~ 188 (451)
T 1pw4_A 110 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAA 188 (451)
T ss_dssp HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTC
T ss_pred HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 99 99999999999999999986 888999999999865 45689999999999999999999988876 7 9999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccccCCCCCCCCCCCCchhhHHhhhhccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy3157 365 CCMTSALFVVNFVYTYWVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLV 444 (822)
Q Consensus 365 f~i~~~~~li~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 444 (822)
|++.+++.++..++.++++||+++.......+..... ..
T Consensus 189 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------------------- 227 (451)
T 1pw4_A 189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------YP---------------------------------- 227 (451)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-------cc----------------------------------
Confidence 9999998888777767777776543221110000000 00
Q ss_pred HHHhhhcCCCCCCCccccccchhhhhhhhhhhhcccccccchhhhhhhhhhhccccCccccCCCCCCCcccccccCCCCc
Q psy3157 445 SCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETKHKDPNLNLDLEHIVKPPAF 524 (822)
Q Consensus 445 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (822)
.+.++ +.
T Consensus 228 ------------------------~~~~~-------------------------------~~------------------ 234 (451)
T 1pw4_A 228 ------------------------DDYNE-------------------------------KA------------------ 234 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------ccchh-------------------------------hh------------------
Confidence 00000 00
Q ss_pred ccCCCCCCcchhhhhcccCCCCCCCChhhhhhhcccccccccccchhhhhhhhhhhhchhhhhhHHHHHHHHHHHHHHhh
Q psy3157 525 SLESSDVNPLLQEEIDMDMGNDRPRDIKEERHVEKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLF 604 (822)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 604 (822)
+++. +..+...... ...+.++.+.+..++..+....+
T Consensus 235 ----------------------------~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
T 1pw4_A 235 ----------------------------EQEL---------TAKQIFMQYV------LPNKLLWYIAIANVFVYLLRYGI 271 (451)
T ss_dssp -----------------------------------------CCTHHHHHHT------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hccc---------ccccchHHHH------HcCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000000000 01123466667777777777788
Q ss_pred hhhhHHhhhcccCCCccceeeEEehhhhhccccceeee-ec-cc--CccchhHHHHHHHH-HHHHHHHhhh--HHHHHHH
Q psy3157 605 YSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIH-ID-SR--NSYSSLYYSFILLT-VSILALYVSV--NLYLFVL 677 (822)
Q Consensus 605 ~~~~~~~l~~~~g~s~~~~g~l~si~gi~~~v~~i~~G-~~-~~--~~~~~l~~~~~l~~-~~~~~l~~~~--~~~~~~~ 677 (822)
..++|.|+++.+|+++.++|++.++.+++++++.++.| +. +. ++++.+..+.++.. ++++++.+.+ +.+...+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 88999999998999999999999999999999999999 43 33 44444444444443 4555444432 3333333
Q ss_pred HHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCccccchhhhhhhcccCccccch
Q psy3157 678 LLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSN 757 (822)
Q Consensus 678 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 757 (822)
...+.+.+..+. + + ....+ ..+..+.+...+
T Consensus 352 ~~~~~g~~~~~~----~-------------------------------~-------------~~~~~-~~~~~~~~~~g~ 382 (451)
T 1pw4_A 352 CMIVIGFLIYGP----V-------------------------------M-------------LIGLH-ALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHTHH----H-------------------------------H-------------HHHHH-HHHTSCTTHHHH
T ss_pred HHHHHHHHHhch----H-------------------------------H-------------HHHHH-HHHHhchhhhhh
Confidence 333322111000 0 0 00001 111223232226
Q ss_pred hhhHHHHHhhh-hhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhhh
Q psy3157 758 ISGIYNSLTSI-AKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTT 806 (822)
Q Consensus 758 ~~Gi~~~~~~l-g~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~~ 806 (822)
++|+.+++..+ |.++||.++|++.|.+| |...|++.+++.++++++.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999875 6667888777777776663
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=4.5e-26 Score=257.31 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++..+......+.+|. +.+++|++..+.|++.+++.++.+++++++|+++||+|||++++++.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777776 556799999999999999999999999999999999999999999999999999999
Q ss_pred ---HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHH-hcccc-----
Q psy3157 293 ---GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVI-HYENG----- 360 (822)
Q Consensus 293 ---~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~-~~~~g----- 360 (822)
+++++++.++++|++.|++.|. .+...++++|++|++.| ++++.+.+.++|.++||++++.+. +....
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 8889999999999999999986 88899999999997655 589999999999999999999998 55422
Q ss_pred -------------------hHHHHHHHHHHHHHHHHHH
Q psy3157 361 -------------------FFYICCMTSALFVVNFVYT 379 (822)
Q Consensus 361 -------------------w~~~f~i~~~~~li~~ll~ 379 (822)
||+.|++.+++.++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999988887766665543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=1.3e-23 Score=241.36 Aligned_cols=172 Identities=14% Similarity=0.209 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQ-----VLLSNFTIGAIASTFSLLQIISAPTVGYLSDL-YGRKTILLTCLFTCI 286 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr-~Grr~~l~~~~ll~~ 286 (822)
.+.+..++..+......+.++.|+.+. +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 455667777777777888888899887 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccccc--h--HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy3157 287 VSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST--K--AFSQLMMVTFLGFFIGPAIGGHVIHYENGF 361 (822)
Q Consensus 287 i~~ll~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~--r--a~g~~~~~~~iG~~igp~l~g~l~~~~~gw 361 (822)
++.++++++++++.++++|++.|++.|. .+...++++|++|++. | ++++++.+.++|.++||++++.+.+.. ||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~ 175 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GY 175 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hH
Confidence 9999999999999999999999999986 8899999999998754 5 467788999999999999999999886 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q psy3157 362 FYICCMTSALFVVNFVYTYWVVTD 385 (822)
Q Consensus 362 ~~~f~i~~~~~li~~ll~~~~~~e 385 (822)
|+.|++.+++.++..++..+..++
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999888777666654444443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=2.4e-24 Score=238.47 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLL 292 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~ 292 (822)
.+++..++.........|.+|.+. +++|.+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 455667777777888888888754 5699999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy3157 293 GLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTS 369 (822)
Q Consensus 293 ~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~--~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~ 369 (822)
+++++++.+++.|++.|++.+. .+...+++.|++|+ |.+++++.+.+..+|.++||.+++++.+.. +||+.|++.+
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~ 161 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHH
Confidence 9999999999999999999986 88889999999975 456799999999999999999999998876 9999999988
Q ss_pred HHHHHHHHHHhhhcccCC
Q psy3157 370 ALFVVNFVYTYWVVTDVK 387 (822)
Q Consensus 370 ~~~li~~ll~~~~~~e~~ 387 (822)
++.++..++..+.+||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHCcccC
Confidence 888777665555566544
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.86 E-value=6.7e-21 Score=218.52 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH------------------hhchHHHHHHHH
Q psy3157 244 NFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG------------------LYKSVYVIFFVR 305 (822)
Q Consensus 244 ~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~------------------~a~s~~~l~i~r 305 (822)
..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.++.++++ +++|++.++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999988 478999999999
Q ss_pred HHhhcccch-hhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHH
Q psy3157 306 ILLGLFKHT-QVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-------NGFFYICCMTSALFVVN 375 (822)
Q Consensus 306 ~l~Gig~g~-~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-------~gw~~~f~i~~~~~li~ 375 (822)
+++|+|.|. .+...++++|+.|++.| ..++.+.+..+|.++++.++..+.... .+||+.+.+.++..++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 999999997 89999999999998665 478888888999999988888776432 25777777666655554
Q ss_pred HHHHhhhcccCCC
Q psy3157 376 FVYTYWVVTDVKK 388 (822)
Q Consensus 376 ~ll~~~~~~e~~~ 388 (822)
.+ ..++.||+++
T Consensus 214 ~~-~~~~~peSp~ 225 (491)
T 4gc0_A 214 LM-LLYTVPESPR 225 (491)
T ss_dssp HH-HGGGSCCCHH
T ss_pred hh-hhhcCCCChH
Confidence 44 3567788764
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=1.1e-20 Score=218.85 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVL------LSNFTIGAIASTFSLLQIISAPTVGYLSDLY-GRKTILLTCLFTC 285 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g------~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~-Grr~~l~~~~ll~ 285 (822)
.+.+..++..++.+...+.++.|+.+++| ++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45667777777888888899999988899 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhc-hHHHHHHHHHHhhcccch-hhHHHHHHHHhccccch--H---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3157 286 IVSYLLLGLYK-SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDSTK--A---FSQLMMVTFLGFFIGPAIGGHVIHYE 358 (822)
Q Consensus 286 ~i~~ll~~~a~-s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~~r--a---~g~~~~~~~iG~~igp~l~g~l~~~~ 358 (822)
+++.++.++++ +++.++++|++.|++.+. .+...+++.|++|++.| + ++++..+.++|.++||.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998 999999999999999986 88999999999997655 3 44488899999999999999998876
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q psy3157 359 NGFFYICCMTSALFVVNFVYTY 380 (822)
Q Consensus 359 ~gw~~~f~i~~~~~li~~ll~~ 380 (822)
||++.|++.+++.++..++.+
T Consensus 176 -g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 176 -GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888766655533
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=4.4e-22 Score=224.46 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH-
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL- 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll- 291 (822)
.+....++...+.+...|++|.|+++++|++..+.|++.+++.+++.++++++|+++||+|||++++++.++++++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~ 90 (417)
T 2cfq_A 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4555556666677778899999998889999999999999999999999999999999999999999888776553221
Q ss_pred --HHhhchHH-HHHHHHHHhhcccch-hhHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy3157 292 --LGLYKSVY-VIFFVRILLGLFKHT-QVLCKAYISDICVD----STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 292 --~~~a~s~~-~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~----~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~ 363 (822)
..++.... .++..+++.|++.|. .+.....+.++.++ +++++|....+..+|.+++|.+++++.+. +|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~ 168 (417)
T 2cfq_A 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQF 168 (417)
T ss_dssp HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhH
Confidence 12222211 234456666666553 33333334444432 23346777777889999999999999874 7999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3157 364 ICCMTSALFVVNFVY 378 (822)
Q Consensus 364 ~f~i~~~~~li~~ll 378 (822)
.|++.+++.++..++
T Consensus 169 ~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 169 VFWLGSGCALILAVL 183 (417)
T ss_dssp HHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998877665444333
No 8
>2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus}
Probab=99.73 E-value=2.7e-18 Score=145.39 Aligned_cols=96 Identities=54% Similarity=1.030 Sum_probs=92.8
Q ss_pred CCCChhHHHhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccc
Q psy3157 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQ 144 (822)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (822)
|+.|||+++++||||+++|+||..+++|+++|.+.++..||.+|.|||.+.++|..+++|++|++++|+++++.++.+.+
T Consensus 1 d~~~pe~llk~sKkGkt~M~FV~v~g~~s~~e~d~it~~WqtsL~Nnhi~~~ry~Id~~r~ifm~~DG~~a~E~kdFL~~ 80 (97)
T 2i9s_A 1 GPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVS 80 (97)
T ss_dssp CTTSCHHHHHHHCSCCCEEEEEECCSSSSHHHHHHHHHHHHHHHHHTTCSEECCEEETTEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhcCCCceEEEEEecCCCCHHHHHHHHHHHHHHHhhCCeeEEEEEEcCCEEEEEEcChHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCC
Q psy3157 145 QERCKSVTIENKVYPG 160 (822)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (822)
++++.+.+.+.+.+++
T Consensus 81 Q~e~~~vtie~q~y~g 96 (97)
T 2i9s_A 81 QDRCAEVTLEGQMYPG 96 (97)
T ss_dssp HSSSCEEECSSSCCSC
T ss_pred CcceeEEEEccEEcCC
Confidence 9999999999887765
No 9
>3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular chaperone, protein folding, YWTD propeller, LDLR; HET: MSE; 1.37A {Caenorhabditis elegans}
Probab=99.57 E-value=5e-16 Score=128.62 Aligned_cols=87 Identities=43% Similarity=0.822 Sum_probs=81.6
Q ss_pred hhhhcCceEEEEEeeCCCCChhhHH------HHHHHHhhhhcccccccccccccCcceeEeecCCCCccccccccccccc
Q psy3157 74 KLSKKGRTLMVFVSVDGDPTRDEAE------SITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQER 147 (822)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (822)
++||||+++|+|+.+.++|+++|++ .++..||.+|.|||.+.+||..+++|+++++++|+++|+.++.+.++++
T Consensus 3 ~~sKKGktlMmFV~v~g~~t~~e~d~~~~~e~it~lWq~sL~NnHi~~qrf~I~d~raiFmf~DGsqAweakdfL~~Qd~ 82 (95)
T 3ofg_A 3 HMSKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMFKNGEQAFEAKKFLLKQEF 82 (95)
T ss_dssp --CCSSCCCEEEEEECCTTSTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEESSGGGHHHHHHHHHTSTT
T ss_pred ccccCCCeEEEEEEecCCCChhhhcccchHHHHHHHHHHHHhhcceeEEEEEecCCEEEEEEcChHHHHHHHHHHhcCcc
Confidence 6899999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCC
Q psy3157 148 CKSVTIENKVYPG 160 (822)
Q Consensus 148 ~~~~~~~~~~~~~ 160 (822)
+.+++.|.+.+++
T Consensus 83 ~~~VtiEgq~y~G 95 (95)
T 3ofg_A 83 VSEVTIEGQSFDG 95 (95)
T ss_dssp EEEEEEECCSSCC
T ss_pred eeEEEEeccccCC
Confidence 9999998887653
No 10
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=99.57 E-value=9.4e-16 Score=127.28 Aligned_cols=88 Identities=53% Similarity=1.036 Sum_probs=82.6
Q ss_pred HhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccccccccccc
Q psy3157 73 LKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVT 152 (822)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (822)
.++||||+++|+|+.+.++|+++|.+.++..||.+|.|||.+.+||..+++|++|++++|+++++.++.+.+++++.+.+
T Consensus 2 ~k~sKkgkt~M~FV~v~g~~t~~e~e~it~~WqtsL~Nnhi~~~ry~I~~dr~ifm~~DGs~awe~kdFL~~Q~~v~~vt 81 (89)
T 3ofh_A 2 SHMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVSQDRCAEVT 81 (89)
T ss_dssp --CCCCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCEEEEECSTTEEEEEESCGGGHHHHHHHHHTSTTEEEEE
T ss_pred CccccCCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCceEEEEEecCCEEEEEEcChHHHHHHHHHHHcCcceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCC
Q psy3157 153 IENKVYPG 160 (822)
Q Consensus 153 ~~~~~~~~ 160 (822)
.+.+.+++
T Consensus 82 iegq~y~g 89 (89)
T 3ofh_A 82 LEGQMYPG 89 (89)
T ss_dssp ETTEEECC
T ss_pred EeccCcCC
Confidence 88876653
No 11
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=99.56 E-value=1.2e-15 Score=127.11 Aligned_cols=87 Identities=77% Similarity=1.248 Sum_probs=80.9
Q ss_pred HhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCCCcccccccccccccccccc
Q psy3157 73 LKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDAKDYLVQQERCKSVT 152 (822)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (822)
.++|||||++|+|+...++|+++|.+.++..||.++.|||.+.++|..+++|+++++++|+++++.++.+.+++++.+.+
T Consensus 3 ~k~sKKGktlMmFV~v~~~~t~~e~d~lt~lWqtsL~Nnhi~~~ry~Id~dr~ifmf~DGs~a~e~kdfL~~Q~~~~~vt 82 (90)
T 3off_A 3 QKHMKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVT 82 (90)
T ss_dssp ---CCTTCCEEEEEEESSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEESSGGGHHHHHHHHTTSTTEEEEE
T ss_pred cccccCCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCCEEEEEEcChHHHHHHHHHHhcCcceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCC
Q psy3157 153 IENKVYP 159 (822)
Q Consensus 153 ~~~~~~~ 159 (822)
.+.+.++
T Consensus 83 iE~q~y~ 89 (90)
T 3off_A 83 IENKEYP 89 (90)
T ss_dssp ETTEEEE
T ss_pred EeccCcC
Confidence 8876654
No 12
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=99.55 E-value=1.9e-15 Score=143.45 Aligned_cols=109 Identities=50% Similarity=0.916 Sum_probs=103.7
Q ss_pred cccccccccccCCCChhHHHhhhhcCceEEEEEeeCCCCChhhHHHHHHHHhhhhcccccccccccccCcceeEeecCCC
Q psy3157 54 KKLSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGS 133 (822)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (822)
|+..++|++++|..||+++++++|||+++|+||.++++++++|.+.++..||.++.|||.+..+|.++++|++|++++|+
T Consensus 48 Rp~pp~D~skldp~~pe~~lk~sKKGk~lMmFV~v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id~dr~iFm~~DGs 127 (195)
T 2kgl_A 48 RPSAPIDFSKLDPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGS 127 (195)
T ss_dssp CCCCSCCCCCSSSSCCSHHHHHCCCCSCCEEEEESSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEETTEEEEEEESCSH
T ss_pred cCCCCCCcccCCccCHHHHHHHhhcCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCCeEEEEeCchH
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccCCCCc
Q psy3157 134 QAWDAKDYLVQQERCKSVTIENKVYPGKL 162 (822)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (822)
++++.++.+..++++.+++.+...+++..
T Consensus 128 ~a~E~KdFLl~Q~e~~eVtiE~q~y~G~~ 156 (195)
T 2kgl_A 128 YAWEIKDFLVSQDRCAEVTLEGQMYPGKG 156 (195)
T ss_dssp HHHHHHHHHHHHSSEEEEECCSSSCCSSS
T ss_pred HHHHHHHHHhcCcceeEEEEcCEeccCCC
Confidence 99999999999999999999999887664
No 13
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.28 E-value=5.5e-11 Score=133.84 Aligned_cols=169 Identities=13% Similarity=0.095 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY--GRKTILLTCLFTCI-VSY 289 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~--Grr~~l~~~~ll~~-i~~ 289 (822)
.+.+..++..........++|.|+++.+|.+..+.+++.+...++.+++.+++|+++||+ |||+.+.++.++.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 444555666666677778888888877899999999999999999999999999999999 99999888777766 666
Q ss_pred HHHHhh--chHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHH-HHHHHHHHHHHHHhcccchHH
Q psy3157 290 LLLGLY--KSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFL-GFFIGPAIGGHVIHYENGFFY 363 (822)
Q Consensus 290 ll~~~a--~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~i-G~~igp~l~g~l~~~~~gw~~ 363 (822)
++..+. .+.+.+++..++.|++.+. .+....++.|.+|++ ++++|+.+....+ |..++|.++|.+.+.. ||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 414 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 414 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH
Confidence 666555 3677788888888988775 777889999999975 5568999999999 9999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy3157 364 ICCMTSALFVVNFVYTYWV 382 (822)
Q Consensus 364 ~f~i~~~~~li~~ll~~~~ 382 (822)
.|++.+++.++..++.++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888887777665443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=1.6e-10 Score=129.75 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy3157 226 SLIVPLVNNYLRTQVLL---SNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIF 302 (822)
Q Consensus 226 ~~~~~~l~~~l~~~~g~---s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a~s~~~l~ 302 (822)
......+|.|+.+.++. +....+++.++..++.+++.++.|+++||+|||+++.++.++.+++.++.++.++.+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33344567777665542 234567888888888899999999999999999999988888888877777778888887
Q ss_pred HHHHHhhcccch-hhHHHHHHHHhccccchH--HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q psy3157 303 FVRILLGLFKHT-QVLCKAYISDICVDSTKA--FSQ-LMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378 (822)
Q Consensus 303 i~r~l~Gig~g~-~~~~~~~i~e~~p~~~ra--~g~-~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~i~~~~~li~~ll 378 (822)
+..++.+++.+. .+....++.|.+|++.|+ .++ ++.+..+|.++||.++|++.+.. |+...|.+.+++.++..++
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHH
Confidence 777777877664 566788999999987664 566 46778899999999999999876 8999999888888877776
Q ss_pred HhhhcccCC
Q psy3157 379 TYWVVTDVK 387 (822)
Q Consensus 379 ~~~~~~e~~ 387 (822)
.++..++.+
T Consensus 396 ~~~~~~~~~ 404 (417)
T 2cfq_A 396 SVFTLSGPG 404 (417)
T ss_dssp HTTSSCCSC
T ss_pred HHhhhcCCC
Confidence 555555533
No 15
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.18 E-value=6.2e-10 Score=124.81 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q psy3157 213 KISFICFLDLFAASLIVPLVNNY-LRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLL 291 (822)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll 291 (822)
...+..++..........+++.| +++.+|.+..+.+++.+...++.+++.+++|+++||+|||+++.++.++.+++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34444555555566667888888 88777999999999999999999999999999999999999999999999999888
Q ss_pred HHhhchHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHH
Q psy3157 292 LGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS-TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG-FFYICCMT 368 (822)
Q Consensus 292 ~~~a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~-~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g-w~~~f~i~ 368 (822)
..+.++.+.++.. ++.|++.+. .+...++..|.+|++ .++.++.. ...+|..++|.+.|.+.+.. | ++..|++.
T Consensus 342 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~ 418 (438)
T 3o7q_A 342 SAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAA-GNIPTAELIP 418 (438)
T ss_dssp HHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHH-TSSGGGGHHH
T ss_pred HHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHh-cchHHHHHHH
Confidence 8888877665544 778888875 788888989988865 34456555 56699999999999999987 6 99888876
Q ss_pred HHHHHHHHH
Q psy3157 369 SALFVVNFV 377 (822)
Q Consensus 369 ~~~~li~~l 377 (822)
+++.++.++
T Consensus 419 ~~~~~~~~~ 427 (438)
T 3o7q_A 419 ALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544433
No 16
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=7.7e-08 Score=109.54 Aligned_cols=162 Identities=9% Similarity=0.073 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh-----chHHHH
Q psy3157 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY-----KSVYVI 301 (822)
Q Consensus 227 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll~~i~~ll~~~a-----~s~~~l 301 (822)
.+..+.+ ++.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.. .+...+
T Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 295 VVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 3333334 3444578888888888888888999999999999999999999998888877776665442 122222
Q ss_pred H-HHHHHhhcccchhhHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHH
Q psy3157 302 F-FVRILLGLFKHTQVLCKAYISDICVDSTK--AFSQLMMVTFLGFFIGPAIGGHVIHYE-----NGFFYICCMTSALFV 373 (822)
Q Consensus 302 ~-i~r~l~Gig~g~~~~~~~~i~e~~p~~~r--a~g~~~~~~~iG~~igp~l~g~l~~~~-----~gw~~~f~i~~~~~l 373 (822)
+ +..+..+++.+..+..+.+.+|.+|.+.| ++|+......+|.++++.+...+.+.. .++.+.|++.+++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 22223333334456778999999998766 477777778888888877766554321 145667888888888
Q ss_pred HHHHHHhhhcccCCCC
Q psy3157 374 VNFVYTYWVVTDVKKY 389 (822)
Q Consensus 374 i~~ll~~~~~~e~~~~ 389 (822)
+..++.++++||++.+
T Consensus 454 ~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 454 LAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHCCCCTTC
T ss_pred HHHHHHHheecCCCCC
Confidence 8888888999998754
No 17
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.84 E-value=4.2e-09 Score=120.20 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHHHHHHHH
Q psy3157 218 CFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL-----TCLFTCIVSYLLL 292 (822)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~-----~~~ll~~i~~ll~ 292 (822)
.++...........++.|..+.++.+....+++.+...++..++.++.|+++||+|||+... ++.++.+++.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM 371 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence 33334444445566777887777777667788888899999999999999999999986554 6666666666655
Q ss_pred Hhhc---------hHHHHHHHHHHhhcccch-hhHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy3157 293 GLYK---------SVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGHVIHYENG 360 (822)
Q Consensus 293 ~~a~---------s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~~--~ra~g~~~~~~~iG~~igp~l~g~l~~~~~g 360 (822)
.+.. +.+.+++..++.|++.+. .+...+++.|.+|++ ++++|+.+....+|..+||.+++.+.+. +
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~ 449 (491)
T 4aps_A 372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--S 449 (491)
T ss_dssp HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--S
T ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 5532 667777888889999886 788899999999975 4568999999999999999999888765 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC
Q psy3157 361 FFYICCMTSALFVVNFVYTYWVVTDV 386 (822)
Q Consensus 361 w~~~f~i~~~~~li~~ll~~~~~~e~ 386 (822)
+.+.|++.+++.++..++.+++.++.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 450 EVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877777766655555543
No 18
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.46 E-value=4.2e-08 Score=107.65 Aligned_cols=153 Identities=9% Similarity=-0.054 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHH--
Q psy3157 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFT-CIVSYL-- 290 (822)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~ig~~~~G~LsDr~Grr~~l~~~~ll-~~i~~l-- 290 (822)
..+..++..........++|.|+++.+|.+..+.+++.+...++..++.++.|++.||+|++. ..+..+ ..++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344455555566666777788888778999999999999999999999999999999998733 222222 222221
Q ss_pred HHHh--hchHHHHHHHHHHhhcccch-hhHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy3157 291 LLGL--YKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVD-STKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICC 366 (822)
Q Consensus 291 l~~~--a~s~~~l~i~r~l~Gig~g~-~~~~~~~i~e~~p~-~~ra~g~~~~~~~iG~~igp~l~g~l~~~~~gw~~~f~ 366 (822)
.... .++.+.+++..++.|++.+. .+...+++.|.+|+ ++++.|+.+....+|..++|.+.+.+.+.. +|...++
T Consensus 282 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~ 360 (375)
T 2gfp_A 282 IPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHH
T ss_pred HHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHH
Confidence 2222 23677777788889998886 78888999999884 455689999999999999999999998765 7877776
Q ss_pred HHH
Q psy3157 367 MTS 369 (822)
Q Consensus 367 i~~ 369 (822)
+.+
T Consensus 361 ~~~ 363 (375)
T 2gfp_A 361 MTL 363 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 19
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.23 E-value=5.8e-07 Score=103.27 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHhhhcccC------CCccceeeEEehhhhhccccceeee--eccc-CccchhHHHHH
Q psy3157 587 YWGIFLIKFLYALAMSLFYSNYISVLTHNFH------ANSQVTGYTVSFQGLVGSFSNVLIH--IDSR-NSYSSLYYSFI 657 (822)
Q Consensus 587 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~g------~s~~~~g~l~si~gi~~~v~~i~~G--~~~~-~~~~~l~~~~~ 657 (822)
+|.+++..++..++...+..+++.|+++.+| +++.+.|++.++..++..++.++.| .|+. ++++.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3667777778888888888889999998889 9999999999999999999999999 5555 66666677777
Q ss_pred HHHHHHHHHHhhh-HHHHHHHHHHhhhccccCCCCccccccccccccccchhhhhhhhhhccCCccccccccccCCCCCc
Q psy3157 658 LLTVSILALYVSV-NLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNL 736 (822)
Q Consensus 658 l~~~~~~~l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (822)
+.+++.+++.+.. +.+.+.+..++.+...+. ..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~-------------------------------------------- 128 (524)
T 2xut_A 94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGG-IKP-------------------------------------------- 128 (524)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHT-THH--------------------------------------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccc-cch--------------------------------------------
Confidence 7777777777766 666555544443321111 000
Q ss_pred cccchhhhhhhcccCcccc--chhhhHHHHHhhhhhhhccchhhhHhhhccCcccchhhHHHHHHHHHHhh
Q psy3157 737 NLDLGQIFAIQKCQGDVFG--SNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVT 805 (822)
Q Consensus 737 ~~~~~~~~~~~~~~g~~~~--~~~~Gi~~~~~~lg~~igP~i~G~i~d~~~~~~~~~f~~~~~~~l~~~~~ 805 (822)
....+..+....++.+ ...+|+.+...++|.++||+++|++.+..+ |...|++.+++.++++++
T Consensus 129 ---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 129 ---LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp ---HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHH
Confidence 0000111111222222 124555999999999999999999998754 666777777766666554
Done!