RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3157
(822 letters)
>gnl|CDD|220622 pfam10185, Mesd, Chaperone for wingless signalling and trafficking
of LDL receptor. Mesd is a family of highly conserved
proteins found from nematodes to humans. The final
C-terminal residues, KEDL, are the endoplasmic reticulum
retention sequence as it is an ER protein specifically
required for the intracellular trafficking of members of
the low-density lipoprotein family of receptors (LDLRs).
The N- and C-terminal sequences are predicted to adopt a
random coil conformation, with the exception of an
isolated predicted helix within the N-terminal region,
The central folded domain flanked by natively
unstructured regions is the necessary structure for
facilitating maturation of LRP6 (Low-Density Lipoprotein
Receptor-Related Protein 6 Maturation).
Length = 156
Score = 180 bits (457), Expect = 9e-53
Identities = 68/104 (65%), Positives = 83/104 (79%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D +PE LLK+SKKG+TLM FV+V G+PTR E E ITKLWQ SLFN+HI A+R++V+D+R
Sbjct: 48 DAKNPEDLLKMSKKGKTLMTFVTVSGNPTRKETEEITKLWQGSLFNNHIDAQRFVVDDNR 107
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKEIKS 168
AIF+FKDGSQAW+AKD+LV QERC VTIE + YPGK S
Sbjct: 108 AIFMFKDGSQAWEAKDFLVSQERCAEVTIEGQEYPGKADARAGS 151
Score = 43.7 bits (103), Expect = 6e-05
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 695 AKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHET-KHKDPNLNLDLGQI 743
KKD+ YNDAD+ERL +QWE D E +HK P +DL ++
Sbjct: 1 KKKDIRDYNDADMERLLEQWE---EDDDDLEEDELPEHKRPPPPIDLSKL 47
Score = 42.9 bits (101), Expect = 1e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 459 AKKDLSFYNDADLERLFDQWE 479
KKD+ YNDAD+ERL +QWE
Sbjct: 1 KKKDIRDYNDADMERLLEQWE 21
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 94.8 bits (236), Expect = 7e-21
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 5/192 (2%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FL SL+ P + YL + +S IG + + FSL ++ P G LSD +G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK-HTQVLCKAYISDICVDS--T 330
R+ +LL L + LLL S++++ +R+L GL A I+D
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 331 KAFSQLMMVTFLGFFIGPAIGGHVIHYEN--GFFYICCMTSALFVVNFVYTYWVVTDVKK 388
+A L LG +GP +GG + F I + + L V K
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESK 180
Query: 389 YPTRTSLSPNGL 400
P +P L
Sbjct: 181 RPKPAEEAPAPL 192
Score = 45.9 bits (109), Expect = 5e-05
Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 16/144 (11%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FA +PL L LS G + LL I +G LSD G
Sbjct: 210 ALLLFGFAFFALLTYLPLYQEVLG----LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265
Query: 274 RKTILLTCLFTCIVSYLLLGL-------YKSVYVIFFVRILLGLFKHTQVLCKAYISDIC 326
R+ LL L I++ L L L + + + GL A +SD+
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGL---VFPALNALVSDLA 322
Query: 327 VDS--TKAFSQLMMVTFLGFFIGP 348
A LG +GP
Sbjct: 323 PKEERGTASGLYNTAGSLGGALGP 346
Score = 37.4 bits (87), Expect = 0.024
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 590 IFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLI-----HID 644
+FL FL L SL L + + G ++ L + + L
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 645 SRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLV 680
R +L + +L L + +L+L ++L V
Sbjct: 61 RRRVLLI---GLLLFALGLLLLLFASSLWLLLVLRV 93
Score = 33.6 bits (77), Expect = 0.36
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 760 GIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTRVVMMKSRR 815
G+ ++ + + PLLGG+++ ++ FL+ + + V +++ +
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLF--GWRAAFLILAILALLAAVLAALLLPRPPP 177
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 90.8 bits (226), Expect = 1e-19
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 6/175 (3%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ FL L+ P + + LS G I S FSL + + GYLSD +G
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDS--T 330
R+ +LL L + LLL S++++ R LLGL A I++
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 331 KAFSQLMMVTFLGFFIGPAIGGHVIHYEN--GFFYICCMTSALFVVNFVYTYWVV 383
+A LG +GP +GG + F I + L + ++ ++
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLL 177
Score = 72.3 bits (178), Expect = 2e-13
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 5/174 (2%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
++ FL F ++ + YL+ + LS G + S F L I+ A G LSD G
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 274 RKTILLT-CLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK-HTQVLCKAYISDIC--VDS 329
R+ +LL L + LLL L S+ ++ +LLG S++
Sbjct: 240 RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299
Query: 330 TKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
A LG +GP + G ++ G+ + + +AL ++ + +
Sbjct: 300 GTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALLLLLLP 352
Score = 44.6 bits (106), Expect = 1e-04
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 54/222 (24%)
Query: 586 AYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIHIDS 645
+ L FL + + L ++ G +S GL G +L + S
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 646 R---NSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFY 702
L +L + +L L ++ +L L ++ L+
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLL-------------------- 275
Query: 703 NDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIY 762
G F FP A + + G+ SG++
Sbjct: 276 --------------GFG-LGFAFP-------------ALLTLASELAPPEARGT-ASGLF 306
Query: 763 NSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVV 804
N+ S+ + PLL G++ D Y FL+ + +
Sbjct: 307 NTFGSLGGALGPLLAGLLLDTG--GYGGVFLILAALALLAAL 346
Score = 30.7 bits (70), Expect = 2.8
Identities = 9/46 (19%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 759 SGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVV 804
G++++ + ++ PLLGG++++ + ++ FL+ + G + +
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESL--GWRWLFLILAILGLLLAL 168
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 62.7 bits (153), Expect = 1e-11
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 248 GAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRIL 307
G + + ++L Q+I +P G L+D +GRK +LL LF ++S + L ++ V+ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 308 LGLFKHT-QVLCKAYISDICVD--STKAFSQLMMVTFLGFFIGPAIGGHVIHYEN---GF 361
G V A I+DI A + LG +GP +GG + + F
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 362 FYICCMTSALFVV 374
++ + A F++
Sbjct: 121 LFLAILALAAFIL 133
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 57.0 bits (136), Expect = 2e-08
Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 8/185 (4%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVL-LSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
++ L L+ P + L T L G + S F L I + G L D Y
Sbjct: 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY 66
Query: 273 GRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLFKHTQ-VLCKAYISDICVDS 329
GR+ +L+ L ++ LLL L + ++ +R+L GL + A +S+ ++
Sbjct: 67 GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEA 126
Query: 330 TKAFSQL----MMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTD 385
T+ + + LG +GP + G ++ + + +AL + + ++
Sbjct: 127 TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLDL 186
Query: 386 VKKYP 390
+ P
Sbjct: 187 LLAAP 191
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 56.5 bits (137), Expect = 3e-08
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 24/215 (11%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL--YKSVY 299
S G I S FS+ +I + G L D +GRK LL ++ LL G KS Y
Sbjct: 43 ASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFY 102
Query: 300 VIFFVRILLGLF-KHTQVLCKAYISDICVDSTK----AFSQLMMVT--FLGFFIGPAIGG 352
++ R+++GL VL YIS+I + + QL + + IG +
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162
Query: 353 HVIHYENGF---FYICCMTSALFVVNFVYT----YWVVTDVKKYPTRTSLSPNGLESSDV 405
+G+ + + + L ++ ++ W+V K R L+ SDV
Sbjct: 163 --YSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA-KLRGVSDV 219
Query: 406 NPLLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCH 440
+ +QEE D R ++ E+ +
Sbjct: 220 DQEIQEEKDSLE-----RSVEAEKASWLELFRGKT 249
Score = 32.7 bits (75), Expect = 0.96
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 30/117 (25%)
Query: 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGL 294
+ + LS+ + I ++ + +L D +GR+ +LL + +L+LG
Sbjct: 278 TIFETLGLSDSLLVTII--VGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG- 334
Query: 295 YKSVYVIFFVRILLGLFKHTQVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIG 351
++ + V +K + +V L F A+G
Sbjct: 335 ---------------------------VALLGVAKSKGAGIVAIVFILLFIAFFALG 364
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 49.7 bits (119), Expect = 4e-06
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 238 TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKS 297
Q+ L+ + +G F+ Q++ G LSD YGR+ +LL LF +S L L L +
Sbjct: 42 VQMTLTLYLLG-----FAAGQLL----WGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92
Query: 298 VYVIFFVRILLGLFKHT-QVLCKAYISDICV--DSTKAFSQLMMVTFLGFFIGPAIGGHV 354
+ + +R + V+ +A + DI + ++ +S LM V L + P +GG++
Sbjct: 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152
Query: 355 IHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTRTSLS 396
+ + + I S ++ ++++ + Y R +S
Sbjct: 153 LVWL-SWHAIFAFLSLAGILLSALIFFILPETLPYEARIQIS 193
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 48.1 bits (115), Expect = 1e-05
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 216 FICFLD--LFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+L FA ++ YL ++ LS +G + S+FS+ IS +G +SD
Sbjct: 5 AAYYLVRKNFALAM------PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN 58
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF 311
+ L L C + L G S++V+ + L G+F
Sbjct: 59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF 96
Score = 33.5 bits (77), Expect = 0.48
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 213 KISFICFLDLFAASL---IVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLS 269
+ +I +F + I+ YL + S + + L ++ G+LS
Sbjct: 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLS 276
Query: 270 D-LYGRKTILLTCLFTC------IVSYLLLGLYKSVYVIFFVRILLGLF 311
D L+ + L F +V +L + +I LG
Sbjct: 277 DKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL--FALGFL 323
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 48.1 bits (115), Expect = 1e-05
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK-TILLTCLFTCIVSYLLLGLYK---S 297
S+ G + S F + I A G+LSD +GRK ++L+ L ++ +L+GL S
Sbjct: 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF-VIGAILMGLAAFALS 126
Query: 298 VYVIFFVRILLGLF-KHTQVLCKAYISDICVDSTKA----FSQLMMVT--FLGFFIGPAI 350
V ++ R+LLG+ L Y+S+I + + QL + + + G
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG--S 184
Query: 351 GGHVIHYENGF---FYICCMTSALFVV 374
G ++ G+ + + + L +
Sbjct: 185 GKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Score = 32.7 bits (75), Expect = 0.87
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 28/162 (17%)
Query: 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG----- 293
L + +GA+ F+ + I +L D +GR+ +LL + +LG
Sbjct: 320 HAFLVSIIVGAVNFAFTFVAI-------FLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372
Query: 294 -----LYKSVYVIFFVRILLGLFKHTQVLCKAYI--SDICVDSTKAFSQLMMVT---FLG 343
S V +L F ++ S+I S + + V
Sbjct: 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432
Query: 344 FFIGPA--IGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
F +G I F + + V+ ++ Y+ +
Sbjct: 433 FIVGFLFPTMLESIGVGGVFIFFGGLN----VLGLIFVYFFL 470
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 45.5 bits (108), Expect = 8e-05
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 217 ICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-RK 275
+ FL A +L P ++ +L +V IG + +++ I + + SD G RK
Sbjct: 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK 64
Query: 276 TILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV-----LCKAYISDICVDST 330
++L C ++ LL ++ +++ + +LL F T L + + ++
Sbjct: 65 GLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAV 124
Query: 331 KAFSQLMMVTFLGFFIGPAIGG 352
S + L + IGP +
Sbjct: 125 MFSSVMRAQISLAWVIGPPLAF 146
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 44.5 bits (105), Expect = 2e-04
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 218 CFLDLFAASLIVPLVNNYLR----TQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
CFL A SL++P + Y+ T N G + S L I++P G L+D G
Sbjct: 23 CFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG 82
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDICV--DSTK 331
RK +LL + +L+GL ++++ +R LLGL A I+ S
Sbjct: 83 RKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGW 142
Query: 332 AFSQLMMVTFLGFFIGPAIGGHVI-HYENGFFYICCMTSALFVVNFVYTYWVVTD 385
A L G +GP GG + Y G + +T+++ + F+ T + + +
Sbjct: 143 ALGTLSTGGVSGALLGPLAGGLLADSY--GLRPVFFITASVLFLCFLVTLFCIRE 195
Score = 43.4 bits (102), Expect = 4e-04
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 220 LDLFAASLIV--------PLVNNYLRTQVLLSN-----FTIGAIASTFSLLQIISAPTVG 266
L LF +LI+ P++ Y+R L N F G IAS + ++SAP +G
Sbjct: 222 LSLFVTTLIIQVATGSIAPILTLYVRE--LAGNVSNIAFISGMIASVPGVAALLSAPRLG 279
Query: 267 YLSDLYGRKTILLTCLFTCIVSYLLL---GLYKSVYVIFFVRILLG-----LFKHTQVLC 318
L D G + IL+T L I S LLL ++ + +R LLG L Q L
Sbjct: 280 KLGDRIGPEKILITAL---IFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336
Query: 319 KAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVY 378
Y S + + + FS +G GP +G I GF + +T+ + + N VY
Sbjct: 337 -VYNSSNQI-AGRIFSYNQSFRDIGNVTGPLMGA-AISANYGFRAVFLVTAGVVLFNAVY 393
Query: 379 TY 380
++
Sbjct: 394 SW 395
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 43.8 bits (104), Expect = 3e-04
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
F F S +P YL TQ LS T G IA F L+ ++ P G+LSD G +
Sbjct: 228 FATFGGFVGFSAYLP---MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR 284
Query: 276 TILL-----TCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV---LCKAYISDICV 327
+ L L ++S L G + FV + L LF + I I
Sbjct: 285 RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVI-- 342
Query: 328 DSTKAFSQLMMVTFLGFFIGP--AIGGHVIHYENGFFY-------ICCMT-SALFVVNFV 377
F + + +G +GG + G M A ++V V
Sbjct: 343 -----FPK--ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395
Query: 378 YTYWV 382
T+ +
Sbjct: 396 LTWAL 400
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 41.8 bits (99), Expect = 0.001
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 246 TIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVR 305
G + + ++L + AP + L+ R+ +LL L IVS LL L S V+ R
Sbjct: 49 AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR 108
Query: 306 ILLGL-----FKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIG---GHVI 355
L GL + + A + + +A + + L +G +G G +
Sbjct: 109 ALAGLAHGVFW----SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 356 HYENGFFYICCMTSALFVVNF 376
+ F I + ++ +
Sbjct: 165 GWRATFLAIAVLALLALLLLW 185
Score = 32.2 bits (74), Expect = 1.1
Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 12/173 (6%)
Query: 214 ISFICFLDLFAA-SLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
+F+ FA + I P +L + S + + F + I G L+D
Sbjct: 219 ATFLFMTGHFALYTYIRP----FLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRG 274
Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT--QVLCKAYISDICVDST 330
R+ ++ L ++ L L + + + L F + + ++ + D+
Sbjct: 275 PRRALIAALLLL-ALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAA 333
Query: 331 KAFSQLMMVTF-LGFFIGPAIGGHVI-HYENGFFYICCMTSALFVVNFVYTYW 381
L + F LG +G A+GG V+ G+ + +AL ++ +
Sbjct: 334 DLAGSLNVAAFNLGIALGAALGGLVLDAL--GYAATGWVGAALLLLALLLALL 384
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 219 FLDLFAASLIVPLVNN-------YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDL 271
L L L+ L Y T VL + + ++ I+ AP +L+
Sbjct: 224 LLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKR 283
Query: 272 YGRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLF 311
+G+K L + + +LL S+++ + +L G+
Sbjct: 284 FGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIG 325
Score = 34.5 bits (80), Expect = 0.24
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 558 EKDSRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVLTHNFH 617
E+ S + S + F + L+ L ALAM++ + T+
Sbjct: 197 ERVSVPPEQKEKVSLRDMFKALFKNR--PLLILLLLYLLNALAMAVRNGLLLYYFTYVLG 254
Query: 618 ANSQVTGYTVSFQ--GLVGS--FSNVLIHIDSRNSYSSLYYSFILLTVSILALYV--SVN 671
+ + ++G+ + + + ++ +L + ++ L+ +
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTF---LLGMLLAAIGLVLLFFLPPGS 311
Query: 672 LYLFVLLLV 680
L+LF++L+V
Sbjct: 312 LWLFLVLVV 320
Score = 33.7 bits (78), Expect = 0.38
Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 238 TQVL-LSNFTIGAIASTFSLLQIISAPTVGYLSD----LYG--RKTILLTCLFTCIVSYL 290
T VL LS +G I + + P VG + D +G R +L+ + I L
Sbjct: 27 TDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVL 86
Query: 291 L----LGLYKSVYVIFF--VRILLGLFKH-TQVLCKAYISDICVDS---TKAFSQLMMVT 340
L GL + +I+ ILLGL + + I + D T S +
Sbjct: 87 LFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLASYRRIGA 146
Query: 341 FLGFFIGPAIGGHVIHY------ENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTR 392
+G + I ++ G+F + + L VV F+ + + P
Sbjct: 147 TIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVPPE 204
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 41.8 bits (99), Expect = 0.001
Identities = 49/193 (25%), Positives = 71/193 (36%), Gaps = 48/193 (24%)
Query: 218 CFLDLFAASLIVPL-VNN----YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
+ S V L ++N Y + LS T GAIA++F L+ + + P GYLSD+
Sbjct: 256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA 315
Query: 273 GRK------TILLTCLFT-----CIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKA- 320
R+ L + T CI LG S+ V IL +F Q C A
Sbjct: 316 ARRFGMRGRLWALWIVQTLGGVFCIW----LGRANSLGAAIVVMILFSIF--VQAACGAT 369
Query: 321 -----YISDICVDSTKAFSQLM--------MVTFLGFFIGPAIGGHVIHYENGFFY---- 363
++S S S L ++T L FF G + E G
Sbjct: 370 FGIVPFVSR---RSLGVISGLTGAGGNVGAVLTQLLFFTGSS-----YSTETGISLMGVM 421
Query: 364 ICCMTSALFVVNF 376
I T + ++F
Sbjct: 422 IIACTLPVAFIHF 434
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 41.6 bits (98), Expect = 0.001
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 20/202 (9%)
Query: 208 SLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGY 267
SL I+F FL L +P++ ++ + N +G L +++ G
Sbjct: 16 SLFR--IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGR 73
Query: 268 LSDLYGRKTILLTCLFTCIVS---YLLLGLYKSVYVIFFV-----RILLGLFKHTQVLCK 319
L+D YG K L + C ++ YLL + F R++LG F +Q+L
Sbjct: 74 LADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILG-FGESQLLTG 132
Query: 320 AYISDI-CVDSTKAFSQLMMVTFLGFFIGPAIG---GHVIHYENGFFYICCMTSALFVVN 375
A + V + ++M + + A G G ++H GF + T L ++
Sbjct: 133 ALTWGLGLVGPKHS-GKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA 191
Query: 376 FVYTYWVVTDVKKYPTRTSLSP 397
+ + V+K P P
Sbjct: 192 WAFNGT----VRKVPAHAGERP 209
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 234 NYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLG 293
+ + Q LS T GA AS LL ++ P G +SD G LL + L+
Sbjct: 250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309
Query: 294 LYKSVYVIFFVRILLGLF 311
L + V I+L +
Sbjct: 310 LGLVSPLSLAVFIVLFVA 327
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 40.4 bits (95), Expect = 0.003
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 24/144 (16%)
Query: 248 GAIASTFSLLQ----IISAPTVGYLSDLYGRKTI-----LLTCLFTCIVS-YLLLGLYK- 296
++ S +L ++ +P G L+D Y RK + L+ + ++ LLG
Sbjct: 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92
Query: 297 -SVYVIFFVRILLGLFKHTQVLCKAYISDICVDS--TKAFSQLMMVTFLGFFIGPAIGGH 353
VYV+ + + F +A + D+ + T+A S V L + +GP IG
Sbjct: 93 WQVYVLAGILAIAQAFFTPAY--QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG-- 148
Query: 354 VIHYENGFFYICCMTSALFVVNFV 377
G Y V+ V
Sbjct: 149 ------GLMYATLGIKWAIWVDAV 166
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 39.6 bits (93), Expect = 0.006
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 231 LVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYL 290
L L LS +G + S FS+ +S +G LSD + + L + +
Sbjct: 50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNI 109
Query: 291 LLGLYKSVYVIFFVRILLGLF 311
L G S+++ + +L G F
Sbjct: 110 LFGFSPSLFLFAVLWVLNGWF 130
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 38.5 bits (90), Expect = 0.011
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLS----NFTIGAIAST-FSLLQIISAPTVGY 267
+I+ + +L F + V + N+L L+ + ++ A F+ +I + G+
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWL--PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307
Query: 268 LSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDIC 326
L+D G + L L + + L+ S ++ + + G F + Q A ++
Sbjct: 308 LADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367
Query: 327 VDSTKAFSQLMMVTF--LGFFIGPAIGGHVI 355
+ +A + LG IGP + G+++
Sbjct: 368 PTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
Score = 35.0 bits (81), Expect = 0.17
Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 15/144 (10%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
I + DL A P + + L +G + S + A G L+D G
Sbjct: 25 IMLMDGYDLAAMGFAAPA----ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIG 80
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGL-----FKHTQVLCKAYISDICVD 328
R+ +LL + V LL L +V + +R L GL + L Y
Sbjct: 81 RRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK---- 136
Query: 329 STKAFSQLMMVTFLGFFIGPAIGG 352
+ + + F G+ IG A+GG
Sbjct: 137 --RFRGTAVGLMFCGYPIGAAVGG 158
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 38.1 bits (89), Expect = 0.019
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 260 ISAPTVGYLSDLYGRKTILL-TCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLC 318
+ + GYLSD +GRK +LL + L T + S +L + V R+L+G+ +
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAV-SGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
Query: 319 KAYI--SDICVDSTKAFSQLMMVTF--LGFFIGPAIGGHVIHYENGFFYICCMTSALFVV 374
A + ++ +A ++ F LG + P + + + ++ S +
Sbjct: 201 -AVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWR----WLQLAVSLPTFL 255
Query: 375 NFVYTYWV 382
F+ +++V
Sbjct: 256 FFLLSWFV 263
>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional.
Length = 417
Score = 37.3 bits (87), Expect = 0.027
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 266 GYLSDLYGRKTILLTCLFTCIVSYLLLGL-----YKSVYVIFFVRILLGLFKHTQV--LC 318
G L+D Y RK ++L TC + ++ L L S+ I+ + + G F V L
Sbjct: 73 GVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALL 132
Query: 319 KAYISDICVDSTKAFSQLMMVTF-LGFFIGPAIGGHVI 355
A + + ++ + M+T LG I PA+GG +I
Sbjct: 133 AATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 36.5 bits (85), Expect = 0.048
Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 46/248 (18%)
Query: 586 AYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQ--VTGYTVSFQGLVGSFSN----- 638
AY +++++ L A + F+ I ++ F A+ + S QGL G
Sbjct: 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140
Query: 639 VLIHIDSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKD 698
+LIH S ++FI+ +L + V F+ + +K KW ++
Sbjct: 141 ILIH-------FSWQWAFIIE--GVLGIIWGVLWLKFI---------PDPPQKAKWLTEE 182
Query: 699 L-SFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNL-NLDLGQIFAIQKCQG----- 751
L + + K KD + L LGQ F + G
Sbjct: 183 EKYIVVGGLLAEQQGKGPSTPKKYQIKE----LLKDRRVWGLALGQ-FLVNIGLGFFLTW 237
Query: 752 ------DVFGSNI--SGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGV 803
G +I +G SL I I +LGG +SD + + + A +
Sbjct: 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL-RRGKSLVFARKTAIIAG 296
Query: 804 VTTRVVMM 811
+ ++M
Sbjct: 297 LVLSLLMF 304
Score = 35.0 bits (81), Expect = 0.14
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG-R 274
I +LD S P L+ + LS G + S FS ++ G+L D +G R
Sbjct: 4 VINYLDRANLSFAAP----MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR 59
Query: 275 KT----ILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF 311
KT I++ +FT + ++ G Y S+Y++ R+LLG
Sbjct: 60 KTLAVFIVIWGVFTGLQAFA--GAYVSLYIL---RVLLGAA 95
Score = 30.8 bits (70), Expect = 3.5
Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 234 NYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKT--ILLTCLFTCI---VS 288
YL + LS G +AS ++ I G LSDL R+ ++ I V
Sbjct: 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299
Query: 289 YLLLGLYKSV----YVIFFVRILLGLF-KHTQVLCKAYISDICVDSTKAFSQLMMVTF-- 341
LL+ V + V LG F + A ISD + + ++ +
Sbjct: 300 SLLMFATNYVNIPYAALALV--ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGN 357
Query: 342 LGFFIGPAIGGHVI----HYENGFFYIC 365
LG +GP + G + + +
Sbjct: 358 LGGIVGPIVIGAIAATTGSFAGALMVVA 385
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 36.0 bits (84), Expect = 0.063
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 237 RTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK 296
Q+ LS + +G F++ Q+ P ++D +GRK ++L ++ + L +
Sbjct: 27 SVQMTLSAYILG-----FAIGQLFYGP----MADSFGRKPVILGGTLVFALAAVACALAQ 77
Query: 297 SVYVIFFVRILLGLFKHT-QVLCKAYISDICV--DSTKAFSQLMMVTFLGFFIGPAIGGH 353
++ + ++R L GL V+ A + D+ + ++ S + +V + + P IGG
Sbjct: 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGW 137
Query: 354 V 354
+
Sbjct: 138 L 138
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 36.4 bits (85), Expect = 0.064
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+FI +L + ++P Y+ Q+ S F G + S L ++S P G +D G
Sbjct: 23 FTFISYLTIGLPLAVLPG---YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLG 79
Query: 274 RKTILLTCLFTCIVSYLLLGL--------YKSVYVIFFVRILLGL 310
K ++ L C +S LL L S+ ++ R+LLG+
Sbjct: 80 PKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI 124
Score = 29.9 bits (68), Expect = 6.4
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 760 GIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTRVVMMKSRRIQRE 819
G Y+ ++ IT L G+++ W Y FL A L +G+ T ++ ++ R E
Sbjct: 341 GAYSVFLDLSLGITGPLAGLVASWF--GYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 35.5 bits (82), Expect = 0.12
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 248 GAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI--FFVR 305
G I S+ QII VGYL+ Y K + +F V +++ + F R
Sbjct: 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCR 138
Query: 306 ILLGLFKHTQVLCKAYISDICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHY---ENGFF 362
++ GL + + I + L M T GF +G I + + G +
Sbjct: 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST-SGFQLGTFIFLPISGWLCESWGGW 197
Query: 363 YIC 365
+
Sbjct: 198 PMI 200
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 35.4 bits (82), Expect = 0.13
Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 14/175 (8%)
Query: 216 FICFLDLFAASLIVPLVNNYLRTQV--LLSNFTIGAIAST-FSLLQIISAPTVGYLSDLY 272
+ L F A L +VN + T L S+ + T + L IS P G+L+ +
Sbjct: 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF 64
Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT-QVLCKAYISDICVDST- 330
G + + L F + LL G+ ++ ++ R++ G L + + +I
Sbjct: 65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR 124
Query: 331 -KAFSQLMMVTFLGFFIGPAIGGHVI-HYENGF-FYI------CCMTSALFVVNF 376
+A + + + +GP +GG +I +Y + F I + A F++
Sbjct: 125 GRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR 179
Score = 33.5 bits (77), Expect = 0.42
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 204 FTMGSLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAP 263
FT+G + + L L+ + ++PL YL+ + + G L ++S+P
Sbjct: 257 FTIGCVY----MSLLGLGLYGSFYLLPL---YLQQVLGYTALQAGLHILPVGLAPMLSSP 309
Query: 264 TVGYLSDLYGRKTILL 279
G + D + ++
Sbjct: 310 IAGRMGDKIDPRKLVT 325
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 33.8 bits (78), Expect = 0.36
Identities = 31/143 (21%), Positives = 47/143 (32%), Gaps = 43/143 (30%)
Query: 196 VGLTIIPTFTMGSLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFT--------- 246
+G+ +I F L K + + A+LIV ++ L+ F
Sbjct: 1 LGILMILVFLE--LIMRK-----RISVIIAALIVAIL------AALIGGFGADLGPMMED 47
Query: 247 -IGAIASTFSLLQIISAPTVGYLSD--------------LYGR--KTILLTCLFTCIVSY 289
I IA TF +L + G + D G K I+ T L T I+S
Sbjct: 48 GISWIAPTFLML-LFGIMFGGIMEDTGLFDPLAVKILRISKGDPWKLIVGTALLTAILSL 106
Query: 290 LLLGLYKSVYVIFFVRILLGLFK 312
L + L L+K
Sbjct: 107 DGDNLT--TVL-IATPAALPLYK 126
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 33.5 bits (77), Expect = 0.45
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 221 DLFAASLIVPLVNN-YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL 279
DLF SL+ ++ Y + L + A+ + S+ + G+L+D GRK +
Sbjct: 31 DLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90
Query: 280 TCLFTCIVSYLLLGL-YKS-----VYVIFFVRILLG 309
L I++ + GL S + + F R LG
Sbjct: 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 32.2 bits (74), Expect = 1.0
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 251 ASTFSLLQIISAPTVGYLSDLYGRKTILL--TCLFTCIVSYLLLGLYKSVYVIFFVRILL 308
A LL A G L+D GRK IL+ LF + S L + R+L
Sbjct: 58 AGILGLL--PGALLGGRLADRIGRKRILIVSVALFG-LFS-LATAQAWDFPSLLVARLLT 113
Query: 309 GL 310
G+
Sbjct: 114 GV 115
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 32.2 bits (73), Expect = 1.1
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 266 GYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISDI 325
G L+D +GRK +++ + V L GL V ++ R ++G+ + C S
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACA---STY 130
Query: 326 CVDSTKAFSQLMMVTFL--GFFIGPAIGGHVI 355
V+S + FL GF IG I + +
Sbjct: 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 31.6 bits (72), Expect = 1.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 333 FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPTR 392
FS LMM G IG +G ++ Y+ F +C + LFV+ + W++ K R
Sbjct: 137 FSLLMMQDSAGAVIGALLGSWLLQYD--FRLVCATGAVLFVLAAAFNAWLLPAYKLSTVR 194
Query: 393 TSL 395
T +
Sbjct: 195 TPV 197
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 31.3 bits (71), Expect = 2.0
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTIL 278
F L+ A + P N TQ+L T G A+ F L++ I G ++D +GRK +
Sbjct: 43 FCSLYFAHIFFPSGNT--TTQLLQ---TAGVFAAGF-LMRPIGGWLFGRIADKHGRKKSM 96
Query: 279 L--TCLF-------TCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKA-YISDICVD 328
L C+ C+ Y +G + ++ R+ GL + A Y+S++ V+
Sbjct: 97 LISVCMMCFGSLVIACLPGYETIGTWAPA-LLLLARLFQGLSVGGEYGTSATYMSEVAVE 155
Query: 329 STKAF-SQLMMVTFLG 343
K F + VT +G
Sbjct: 156 GRKGFYASFQYVTLIG 171
>gnl|CDD|236743 PRK10719, eutA, reactivating factor for ethanolamine ammonia lyase;
Provisional.
Length = 475
Score = 31.4 bits (72), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 238 TQVLLSNFTIGAIASTFSLLQI-ISAPTVGYLSDLY 272
TQV+ S + AS F + +I I + Y S +Y
Sbjct: 18 TQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIY 53
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 31.3 bits (71), Expect = 2.4
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 751 GDVFGSNISGIYNSLTSIAKVITPLLGGIISDWVQDNY--KVTFLVAFLF 798
D+FG S AK + + GG+I+ + TF+V F
Sbjct: 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF 370
Score = 31.3 bits (71), Expect = 2.4
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 12/156 (7%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGR-KTI 277
FL+ + L++ L Y + + LS+ + S S+ P +G LSD GR KT+
Sbjct: 215 FLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM 273
Query: 278 LLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFK--HTQVLCKAYISDICVDSTKAFSQ 335
+ + + +L + V+F + L F T L + +SDI +
Sbjct: 274 SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF--GPANSAA 331
Query: 336 LMMVTFLGFFIGPAIGGHVIHY---ENGF---FYIC 365
+ + GG + + E GF F +
Sbjct: 332 NYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVT 367
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.0 bits (70), Expect = 2.5
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 221 DLFAASLIV-PLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL 279
D F +L++ + + T V ++ A+ S + A G D YGR+ ++
Sbjct: 27 DFFLVALVLAEVAGEFGLTTVDAASLISAALIS-----RWFGALMFGLWGDRYGRRLPMV 81
Query: 280 TCLFTCIVSYLLLGLYKSVYVIFFVRILLGL 310
T + L G +F R+++G+
Sbjct: 82 TSIVLFSAGTLACGFAPGYITMFIARLVIGI 112
>gnl|CDD|151367 pfam10920, DUF2705, Protein of unknown function (DUF2705). This
bacterial family of proteins has no known function.
Length = 247
Score = 30.6 bits (69), Expect = 2.9
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 13/179 (7%)
Query: 221 DLFAASLIVPLVNNYLRTQVLLSNFTIGAIAST-FSLLQIISAPTVGYLSDLYGRKTILL 279
DL + + + + + + L+ F I I F+LLQI + ++ L + +
Sbjct: 70 DLLISYEFLKISREFKKEKWLMKQFLIIFIRLIIFTLLQI----AIFFIFSLVSLHNLDI 125
Query: 280 TCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV---LCKAYISDICVDSTKAFSQL 336
+ L+LG ++ IF ++ L LF Q+ L YI + QL
Sbjct: 126 NSVINAPFLMLILGYSIMLFNIFSFQLFLELFIDAQIALLLINGYII-FSIILADKIVQL 184
Query: 337 MMVTFLGFFIGPAIGG----HVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKKYPT 391
+ +F+ P G +I + N I LF++ + + +KK+
Sbjct: 185 NSPKVIHYFLIPNYGMGFRTGLIPFSNSGTAIIEPLLGLFIIIILLICIFILAIKKFKK 243
>gnl|CDD|241071 cd12627, RRM1_IGF2BP3, RNA recognition motif 1 in vertebrate
insulin-like growth factor 2 mRNA-binding protein 3
(IGF2BP3). This subgroup corresponds to the RRM1 of
IGF2BP3 (IGF2 mRNA-binding protein 3 or IMP-3), also
termed KH domain-containing protein overexpressed in
cancer (KOC), or VICKZ family member 3, an RNA-binding
protein that plays an important role in the
differentiation process during early embryogenesis. It
is known to bind to and repress the translation of IGF2
leader 3 mRNA. IGF2BP3 also acts as a
Glioblastoma-specific proproliferative and proinvasive
marker acting through IGF2 resulting in the activation
of oncogenic phosphatidylinositol
3-kinase/mitogen-activated protein kinase (PI3K/MAPK)
pathways. IGF2BP3 contains four hnRNP K-homology (KH)
domains, two RNA recognition motifs (RRMs), also termed
RBDs (RNA binding domains) or RNPs (ribonucleoprotein
domains), and a RGG RNA-binding domain. .
Length = 77
Score = 28.4 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 470 DLERLFDQWEVSFQVPFWQLHLVSRVYAF 498
DLE +F ++ F PF LV YAF
Sbjct: 17 DLESIFKDSKIPFSGPF----LVKSGYAF 41
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 29.8 bits (67), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 460 KKDLSFYNDADLERLFDQWEVSFQVP----FW 487
LSFY+ + ERL ++EVSF P FW
Sbjct: 124 NGTLSFYSVDNQERLLHEFEVSFSSPLYPAFW 155
>gnl|CDD|223940 COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M)
[Energy production and conversion].
Length = 497
Score = 30.3 bits (69), Expect = 4.4
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 204 FTMGSL-TPHKISFIC-FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIAS-TFSLLQ-- 258
F M SL P F+ FL L + + P V L+ F + A + Q
Sbjct: 378 FAMASLGLPGTSGFVGEFLILLGSFQVFPWV-------AFLAAFGLILTAVYMLWMYQRV 430
Query: 259 ---IISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295
+ ++ L DL GR+ +L L +V L LG+Y
Sbjct: 431 FFGPLKEGSLAELPDLNGREVFILAPL---VVLILFLGVY 467
>gnl|CDD|200147 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
oxidoreductase, chain M. This model describes the 13th
(based on E. coli) structural gene, M, of bacterial NADH
dehydrogenase I, as well as chain 4 of the corresponding
mitochondrial complex I and of the chloroplast NAD(P)H
dehydrogenase complex [Energy metabolism, Electron
transport].
Length = 481
Score = 30.3 bits (69), Expect = 4.8
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 197 GLTIIPTFTMGSL-TPHKISFIC-FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIAS-T 253
++ F M SL P F+ FL L + + P+V L+ I A+
Sbjct: 368 AFFML--FAMASLGLPGTSGFVGEFLILLGSFKVNPVV-------AFLAALGIVLAAAYM 418
Query: 254 FSLLQ-----IISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLY 295
+L + +S P V DL GR+ +L L +V L LGLY
Sbjct: 419 LTLYKRVFFGELSNPEVAEFPDLNGREIAVLAPL---VVLILFLGLY 462
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 30.4 bits (69), Expect = 4.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 751 GDVFGSNISGIYNSLTSIAKVIT----PLLGGIISDWVQD 786
G +FGS+ GI L ++AK +T PL G I+ + V D
Sbjct: 270 GSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWD 309
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 29.9 bits (68), Expect = 5.7
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 212 HKISFICFL--DLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLS 269
+ + S++V V L L + + +AS L +I L
Sbjct: 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFA--YLLLLASGAGL--LIGLILWPRLV 296
Query: 270 DLYGRKTILLTCLFTCIVSYLLLGL--YKSVYVIFFVRILLGLFKHTQ-VLCKAYISDIC 326
+G+K + L L V YLLL SV +I I+ G+ L A ++D
Sbjct: 297 KKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADT- 355
Query: 327 VD----STKAFSQLMMVTFLGFF--IGPAIGGHVI 355
VD T + ++ + + FF +G A+ G +
Sbjct: 356 VDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390
>gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin.
Peroxisomes play diverse roles in the cell,
compartmentalising many activities related to lipid
metabolism and functioning in the decomposition of toxic
hydrogen peroxide. Sequence similarity was identified
between two hypothetical proteins and the peroxin
integral membrane protein Pex24p.
Length = 360
Score = 29.7 bits (67), Expect = 6.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 276 TILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKH 313
+ LL F C+V YLLL ++F + + L++H
Sbjct: 46 SFLLVYTFICLVPYLLLVSLPLGPLLFGIMVPGYLWRH 83
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 29.7 bits (67), Expect = 6.7
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 54/170 (31%)
Query: 241 LLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILL--------------TCLFTCI 286
LL +G I TF++L I+ TV D +GRK + + T +T
Sbjct: 309 LLQTIIVGVINLTFTVLAIM---TV----DKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361
Query: 287 VSYLLLGLYKSVYVIFFVR-------ILLG-LFKHT---QVLCKA----YISDICVDSTK 331
+ L L YV F +LL +F + + L A +I++ V T
Sbjct: 362 PGIVAL-LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT- 419
Query: 332 AFSQLMMVTFLGFFIGPAIGGHVIHYENGFFY----ICCMTSALFVVNFV 377
F + ++L V H+ NGF Y + +ALF+ FV
Sbjct: 420 -FPMMDKNSWL-----------VAHFHNGFSYWIYGCMGVLAALFMWKFV 457
>gnl|CDD|226899 COG4512, AgrB, Membrane protein putatively involved in
post-translational modification of the autoinducing
quorum-sensing peptide [Posttranslational modification,
protein turnover, chaperones / Signal transduction
mechanisms / Transcription].
Length = 198
Score = 29.0 bits (65), Expect = 7.2
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 589 GIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLV-GSFSNVLIHIDSRN 647
+ L L + L Y+ ++ V HA + +S V + V +ID+ N
Sbjct: 50 SLLHGLILLTLQIHLSYT-FLRVNAFGAHAKHSIGCTLLSLLMFVLIPY--VPFNIDANN 106
Query: 648 SYSSLYYSFILLTVSILA 665
Y+ LL + A
Sbjct: 107 YAVLAYFIIGLLLIFKYA 124
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Streptococcus aureus MepA. The integral membrane
proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Streptococcus aureus
MepA and Vibrio vulnificus VmrA and functions most
likely as a multidrug efflux pump.
Length = 426
Score = 29.4 bits (67), Expect = 7.5
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 38/149 (25%)
Query: 219 FLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVG------------ 266
FL ++S++ ++N L + + A +L + P +G
Sbjct: 236 FLMQLSSSVVTIVLNLTLLG--YGGDIGVAAFGIVTRILTFLFLPLIGLSQGLQPIIGYN 293
Query: 267 YLSDLYGR-----KTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAY 321
Y + Y R K L+ L +V +L+L + F ++ LF L
Sbjct: 294 YGAGNYDRVKQALKLALIVALIYGLVLFLIL--------LLFPEQIVSLFTDDPEL---- 341
Query: 322 ISDICVDSTKAFSQLMMVTFLGFFIGPAI 350
+ ++ ++ F G I
Sbjct: 342 -----IALAARILRIFLLAF--PLAGINI 363
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 29.5 bits (67), Expect = 8.0
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 339 VTFLGFFIGPAI----GGHVIHYENGFFYICCMTSALFVVNFVY 378
V FF+G I GG + Y F Y+ ++ L ++ F +
Sbjct: 697 VGITSFFVGEGIKYVGGGRISSY--LFLYLFYVSIFLLILYFFF 738
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 29.6 bits (67), Expect = 8.2
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301
LS+ + I S++ + A G+L + +G K +L+ L ++ L L +
Sbjct: 285 LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDF 344
Query: 302 FFVRILLGLFK-HTQVLCKAYIS 323
+ + +L+G Q ++Y++
Sbjct: 345 WILGLLVGTSLGGAQASSRSYLA 367
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 29.5 bits (67), Expect = 8.4
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 234 NYLRTQVLLSN--FTIGAIASTFSLLQIISAPTVGYLSDLYGRKT--ILLTCLFTCIVSY 289
YL + LS + + S I P G LSD GR+ I+ T L +
Sbjct: 244 TYLTQTLGLSANSALLVLMLSLILFFITI--PLSGALSDRIGRRPVLIIFTVLAALLAVP 301
Query: 290 LLLGLYKS--VYVIFFVRILLGLF 311
LL+ L S + FF+ + + L
Sbjct: 302 LLMALLDSGSFTLFFFLVLGMALI 325
>gnl|CDD|179568 PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiporter;
Provisional.
Length = 504
Score = 29.3 bits (66), Expect = 9.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 658 LLTVSILALYVSVNLYLFVLLLVSCKKFKEGEEKPKW 694
+ +A +N + L + +C++ ++GEE P
Sbjct: 411 FFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLL 447
>gnl|CDD|184973 PRK15011, PRK15011, sugar efflux transporter B; Provisional.
Length = 393
Score = 29.1 bits (65), Expect = 9.5
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 209 LTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYL 268
LT + FL A +L P ++ +L +V +G + +++ I+ + +
Sbjct: 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR 74
Query: 269 SDLYG-RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT 314
SD G RK++++ C +++ L ++ +V+ FV + L F T
Sbjct: 75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGST 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,661,371
Number of extensions: 4159156
Number of successful extensions: 4115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4080
Number of HSP's successfully gapped: 159
Length of query: 822
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 717
Effective length of database: 6,280,432
Effective search space: 4503069744
Effective search space used: 4503069744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.0 bits)