RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3157
(822 letters)
>2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold,
chaperone; NMR {Mus musculus}
Length = 97
Score = 164 bits (416), Expect = 5e-48
Identities = 53/94 (56%), Positives = 73/94 (77%)
Query: 68 DPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIF 127
PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V RAIF
Sbjct: 4 KPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIF 63
Query: 128 LFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGK 161
+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 64 MLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGK 97
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 158 bits (401), Expect = 9e-45
Identities = 54/101 (53%), Positives = 74/101 (73%)
Query: 65 DNPDPESLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSR 124
D PES+LK++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V R
Sbjct: 59 DPGKPESILKMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDR 118
Query: 125 AIFLFKDGSQAWDAKDYLVQQERCKSVTIENKVYPGKLTKE 165
AIF+ +DGS AW+ KD+LV Q+RC VT+E ++YPGK
Sbjct: 119 AIFMLRDGSYAWEIKDFLVSQDRCAEVTLEGQMYPGKGGGS 159
Score = 49.8 bits (118), Expect = 6e-07
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 686 KEGEEKPKWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLNLDLGQI 743
P KKD+ YNDAD+ RL +QWE D +HK P+ +D ++
Sbjct: 4 PGEATPPPRKKKDIRDYNDADMARLLEQWEKD---DDIEEGDLPEHKRPSAPIDFSKL 58
Score = 44.8 bits (105), Expect = 3e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 450 KEGEEKPKWAKKDLSFYNDADLERLFDQWE 479
P KKD+ YNDAD+ RL +QWE
Sbjct: 4 PGEATPPPRKKKDIRDYNDADMARLLEQWE 33
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding,
YWTD propeller; 2.00A {Drosophila melanogaster} PDB:
3ofe_A*
Length = 90
Score = 154 bits (390), Expect = 1e-44
Identities = 68/90 (75%), Positives = 81/90 (90%)
Query: 71 SLLKLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFK 130
K KKGRTLM FVSV G+PTR+E+++ITKLWQTSL+N+HIQAERYMV+D+RAIFLFK
Sbjct: 1 GSQKHMKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFK 60
Query: 131 DGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
DG+QAWDAKD+L++QERCK VTIENK YPG
Sbjct: 61 DGTQAWDAKDFLIEQERCKGVTIENKEYPG 90
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD
propeller; 2.01A {Mus musculus}
Length = 89
Score = 151 bits (382), Expect = 1e-43
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 74 KLSKKGRTLMVFVSVDGDPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGS 133
++KKG+TLM+FV+V G+PT E E IT LWQ SLFN++ +R++V RAIF+ +DGS
Sbjct: 3 HMTKKGKTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGS 62
Query: 134 QAWDAKDYLVQQERCKSVTIENKVYPG 160
AW+ KD+LV Q+RC VT+E ++YPG
Sbjct: 63 YAWEIKDFLVSQDRCAEVTLEGQMYPG 89
>3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular
chaperone, protein folding, YWTD propeller, LDLR; HET:
MSE; 1.37A {Caenorhabditis elegans}
Length = 95
Score = 140 bits (354), Expect = 1e-39
Identities = 38/93 (40%), Positives = 63/93 (67%), Gaps = 6/93 (6%)
Query: 74 KLSKKGRTLMVFVSVDGDPTRDEA------ESITKLWQTSLFNSHIQAERYMVEDSRAIF 127
+SKKG+TLM+FV V D + E T++WQ+ L+N+H+ + ++++D+RAIF
Sbjct: 3 HMSKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIF 62
Query: 128 LFKDGSQAWDAKDYLVQQERCKSVTIENKVYPG 160
+FK+G QA++AK +L++QE VTIE + + G
Sbjct: 63 MFKNGEQAFEAKKFLLKQEFVSEVTIEGQSFDG 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 6e-12
Identities = 97/521 (18%), Positives = 163/521 (31%), Gaps = 168/521 (32%)
Query: 85 FVSVDGDPTR-----DEAESITKLWQTSLFNSHIQAERYMVEDSRA--------IFL--F 129
F + +PT DE + +L F ++ + VE S+ + L F
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELV--GKFLGYVSSL---VEPSKVGQFDQVLNLCLTEF 91
Query: 130 KDGSQAWDAKDYLVQQE---RCKSVTIENKVYPGKLTKEIKSLLGQQERCKSVTIENKVY 186
++ YL + + EN K + IK+ + R + +K
Sbjct: 92 EN--------CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TARIMAKRPFDKKS 141
Query: 187 PGKLTKEVSVG-LTIIPTFTMG-------------SL----TPHKISFICFLDLFAASLI 228
L + V G ++ F G L I F +A +
Sbjct: 142 NSALFRAVGEGNAQLVAIF--GGQGNTDDYFEELRDLYQTYHVLVGDLIKF----SAETL 195
Query: 229 VPLVNNYLRTQVLLSNFTIGAIASTFSLLQII----SAPTVGYLSDLYGRKTILLTCLFT 284
L+ L + + FT G ++L+ + + P YL +
Sbjct: 196 SELIRTTLDAEKV---FTQG-----LNILEWLENPSNTPDKDYLL--------------S 233
Query: 285 CIVSYLLLGLYKSV-YVIF----------FVRILLGLFKHTQ-VLCKAYISDICVDSTKA 332
+S L+G+ + YV+ L G H+Q ++ I+ DS ++
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA--ETDSWES 291
Query: 333 FSQLM--MVTFLGFFIG-------P--AIGGHVIHY--ENGFFYICCMTSALFVVNFVYT 379
F + +T L FFIG P ++ ++ EN M ++ +
Sbjct: 292 FFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSISNLTQ 346
Query: 380 YWVVTDVKKYPTRTSLSPNG-LESSDVN----------PL-LQ------EEIDMDMGNDR 421
V V K T + L +E S VN P L + G D+
Sbjct: 347 EQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 422 PRDIKEERHLVII--FLSV-----CHLGLVSCKKFKEGEEKPK---WAKKDL-----SFY 466
R ER L FL V HL LV + + KD+ +
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 467 NDADL--------ERLFDQ-------WEVSFQVPFWQLHLV 492
+ +DL ER+ D WE + F H++
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETT--TQFKATHIL 502
Score = 57.8 bits (139), Expect = 1e-08
Identities = 105/662 (15%), Positives = 189/662 (28%), Gaps = 271/662 (40%)
Query: 223 FAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSD--------LYGR 274
L+VP ++ L F +I+ PT G+ +D L G+
Sbjct: 16 LEHVLLVP-TASFFIASQLQEQFN-----------KILPEPTEGFAADDEPTTPAELVGK 63
Query: 275 KTILLTCLFTCIVSYLL----LGLYKSVYVIFFVRILLGLFKHTQVLCK----AYISDIC 326
F VS L+ +G + V + + L F L A + +
Sbjct: 64 --------FLGYVSSLVEPSKVGQFDQV-----LNLCLTEF-ENCYLEGNDIHALAAKLL 109
Query: 327 VDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALF----------VVNF 376
++ + + + + ++ SALF V F
Sbjct: 110 QENDTTLVKTKEL-IKNYITARIMAKRPFDKKS--------NSALFRAVGEGNAQLVAIF 160
Query: 377 ---------------VY-TY-WVVTDVKKYPTRTSLSPNGLESSDVNPLLQEEIDMDMGN 419
+Y TY +V D+ K+ + +LS + D + + +++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 420 DRPRDIKEERHLV-------IIFL-SVCHLGLVSCKK--FKEGEEKPK------------ 457
+ P + ++ +L+ +I + + H +V+ K F GE +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 458 ----------WAKKDLSFYNDAD--LERLFDQWEVSFQVPFWQLHLVSRVYAFCFPHETK 505
W SF+ + LF + R C +E
Sbjct: 279 TAVAIAETDSWE----SFFVSVRKAITVLF--------------FIGVR----C--YEAY 314
Query: 506 HKDPNLNLDLEHIVKPPAFSLESSDVNPLLQEEIDMDMGNDRP----RDIKEERHVEKD- 560
PN +L PP+ +L++ ++ + G P ++ +E V+
Sbjct: 315 ---PNTSL-------PPS----------ILEDSLENNEGVPSPMLSISNLTQE-QVQDYV 353
Query: 561 SRARVSLSQSSFLTYCRETFNIDWSAYWGIFLIKFLYALAMSLF--YSNYISVLTHNFHA 618
++ L + +SL N +
Sbjct: 354 NKTNSHLPAGK--------------------------QVEISLVNGAKNLV--------- 378
Query: 619 NSQVTGYTVSFQGLVGSFSNV--LIHID-SRNSYS----SLYYSFILLTVSILALYVSVN 671
V+G S GL + +D SR +S F L V+ + + S
Sbjct: 379 ---VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVA--SPFHS-- 429
Query: 672 LYLFVLLLVSCKKFKEGEEKPK---WAKKDL-----SFYNDADL--------ERLFDQ-- 713
LLV + + KD+ ++ +DL ER+ D
Sbjct: 430 -----HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 714 -----WEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQKCQGDVFGSNISGIYNSLTSI 768
WE + A T H LD G G SG+ LT
Sbjct: 485 RLPVKWETTTQFKA------T-HI-----LDFG--------PGGA-----SGL-GVLTHR 518
Query: 769 AK 770
K
Sbjct: 519 NK 520
Score = 46.6 bits (110), Expect = 3e-05
Identities = 56/383 (14%), Positives = 111/383 (28%), Gaps = 145/383 (37%)
Query: 515 LEHIVKPPAFSLESSDVNPLLQEEID----MDMGNDRPRDIKEERHVEKD--SRARVS-- 566
L +++ D + + ++ ++ ++ P +KD +S
Sbjct: 195 LSELIRTT------LDAEKVFTQGLNILEWLENPSNTP---------DKDYLLSIPISCP 239
Query: 567 ---LSQ-SSFLTYCRETFNIDWSAYWGIFLIKF----------LYALAMSL------FYS 606
+ Q + ++ + + ++ G + A+A++ F+
Sbjct: 240 LIGVIQLAHYVVTAK---LLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 607 NYISVLTHNFH--ANSQVT----------------------GYTVSFQGLVGSFSNVLIH 642
+ +T F +S L + V +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL--TQEQVQDY 352
Query: 643 IDSRNSYSSLYYSFILLTVSILALY-------VS---VNLYLFVLLLVSCK--------K 684
++ NS+ V I +L VS +LY L L K +
Sbjct: 353 VNKTNSHLPAGKQ-----VEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 685 FKEGEEKPKWAKKDL-------SFYNDADLERLFDQWEVSLGKDAFCFPHETKHKDPNLN 737
E K K++ + L S L D L K+ F +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHL----LVPASDLINKDLVKNNVSFNAK--------- 453
Query: 738 LDLGQIFAIQKCQGDVF----GSNISGIYNSLT-SIAKVIT--PLLGGIISDWVQ-DNYK 789
D+ I V+ GS++ + S++ I I P+ W +K
Sbjct: 454 -DI----QIP-----VYDTFDGSDLRVLSGSISERIVDCIIRLPV------KWETTTQFK 497
Query: 790 VTFLVAFLFGA---VGVVTTRVV 809
T ++ F G +GV+T R
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNK 520
Score = 37.7 bits (87), Expect = 0.019
Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 51/146 (34%)
Query: 3 NGR---------ESLKGEAILHSASSDSETKSGLESSFIVHFSRPGPRKLSIRIN----- 48
NG +SL G L+ ++ SGL+ S I FS RKL
Sbjct: 372 NGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRI-PFSE---RKLKFSNRFLPVA 424
Query: 49 ------YRTSAKKLSDLRLKFKDNPDPESLLKLSKKGRTLM--VFVSVDGDPTRDEAESI 100
A L + L + +S + + V+ + DG R + SI
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNN---------VSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 101 TKL-----------WQTSLFN--SHI 113
++ W+T+ +HI
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHI 501
Score = 37.3 bits (86), Expect = 0.028
Identities = 47/264 (17%), Positives = 80/264 (30%), Gaps = 94/264 (35%)
Query: 30 SFIVHFSRPGPRKLSIRINYRTSAKKLSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVD 89
+ +HF G + IR NY + F+ D K +T +F ++
Sbjct: 1671 NLTIHF--GGEKGKRIRENY---------SAMIFETIVD--------GKLKTEKIFKEIN 1711
Query: 90 GDPT----RDEAESITKLWQTSLFNSHIQ-AERYMVEDSRAIF--LFKDGSQAWDAK--- 139
T R E L T + Q A + +A F L G DA
Sbjct: 1712 EHSTSYTFRSEKG---LLSATQ--FT--QPA---LTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 140 ----DY--LVQQERCKS--VTIENKVYPGKLTKEIKSLLGQQERCKSVTIENKVYPGKLT 191
+Y L + ++IE+ V ++ R G
Sbjct: 1762 HSLGEYAALA----SLADVMSIESLV---EVVF---------YR------------GMTM 1793
Query: 192 KE-VSVGLTIIPTFTMGSLTPHKISFICFLDLFAASLIVPLVNNYLRTQVLLS--NFTI- 247
+ V + M ++ P +++ + A +V V RT L+ N+ +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGK--RTGWLVEIVNYNVE 1849
Query: 248 GAIASTFSLLQIISAPTVGYLSDL 271
Q ++A G L L
Sbjct: 1850 NQ--------QYVAA---GDLRAL 1862
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 63.4 bits (155), Expect = 9e-11
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 239 QVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSV 298
Q ++ + + + + Q+ G +SD GR+ ++L + +++ L+ S+
Sbjct: 38 QSVMGAYLLT-----YGVSQLF----YGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88
Query: 299 YVIFFVRILLGLFK-HTQVLCKAYISDIC--VDSTKAFSQLMMVTFLGFFIGPAIGGHVI 355
V+ + G+ V+ + D+ A S L M + + P IGG +
Sbjct: 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148
Query: 356 HY 357
Sbjct: 149 TM 150
Score = 28.8 bits (65), Expect = 7.1
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 752 DVFGSNISGIYNSL----TSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTR 807
D++ NSL ++ ++ PL+GG++ N++ +L + A +
Sbjct: 115 DLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCAGVTFSMA 172
Query: 808 VVMMKSRRIQREMKR 822
M ++R + R
Sbjct: 173 RWMPETRPVDAPRTR 187
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 63.8 bits (155), Expect = 1e-10
Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 10/207 (4%)
Query: 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
F F P +L +S G I + SL ++ P G LSD
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 273 GRKTILLT----CLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQV-----LCKAYIS 323
G + LL L ++ + Y I I+ G++ +A+I
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 324 DICVDSTKAFSQLMMVTFLGFFIGPAIGGHVI-HYENGFFYICCMTSALFVVNFVYTYWV 382
+ S F + M +G+ +G +I G + F++ + + V +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 383 VTDVKKYPTRTSLSPNGLESSDVNPLL 409
+ + L
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELF 217
Score = 45.7 bits (108), Expect = 4e-05
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 7/143 (4%)
Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYKSVYVI 301
G + + LL + + G K LL V + S +
Sbjct: 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV 315
Query: 302 FFVRILLGL-FKHTQVLCKAYISDICVDSTKAFSQLMMVTF---LGFFIGPAIGGHVIH- 356
++ L V C YI+ A L+ F L + G++
Sbjct: 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375
Query: 357 --YENGFFYICCMTSALFVVNFV 377
++ + + + +++
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVF 398
Score = 34.5 bits (79), Expect = 0.14
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 585 SAYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIHID 644
++ + ++K L+ + +T F T Y V F + + + +
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC-FFKQLAMIFMSVL 368
Query: 645 SRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLVSCKKFKEGEE 690
+ N Y S+ + L + ++AL ++ + V L
Sbjct: 369 AGNMYESIGFQGAYLVLGLVALGFTL---ISVFTLSGPGPLSLLRR 411
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-04
Identities = 90/635 (14%), Positives = 193/635 (30%), Gaps = 166/635 (26%)
Query: 56 LSDLRLKFKDNPDPESLLKLSKKGRTLMVFVSVDGD---PTRDEAESITKLWQTSLFNSH 112
LS F DN D + + + K + + D ++D +L+ T L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 113 IQAERYMVEDSRAIFLF-------KDGSQAWDAKDYLVQQER-CKSVTIENK--VYPGKL 162
++++ E R + F + + + Y+ Q++R + K V +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 163 TKEIKSLLGQQERCKSVTIENKVYPGK--LTKEVSVGLTIIPTFTMGSLTPHKISFICFL 220
+++ L + K+V I+ + GK + +V + + KI ++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLK 190
Query: 221 DLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKTILLT 280
+ + ++ ++ L Q + N+T + S+ L+I S L L K
Sbjct: 191 NCNSPETVLEMLQK-LLYQ-IDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKP-YEN 245
Query: 281 CL----------------FTCIVSYLLLGLYKSVYVIFFVRILLGLFKHTQVLCKAYISD 324
CL +C + LL +K V T L A +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQV---------------TDFLSAATTTH 288
Query: 325 ICVD-STKAFSQLMMVTFLGFFIG------P--AIGGHVIHYENGFFYICCMTSALFVVN 375
I +D + + + + L ++ P + + + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--------LSIIAESIRDG 340
Query: 376 FV-YTYWVVTDVKKYPTRTSLSPNGLESS--------------DVN-P--LLQ------- 410
+ W + K T S N LE + + P LL
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 411 EEIDMDMGND--RPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYND 468
+ M + N + ++++ I + +L L + E + + + YN
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYN- 454
Query: 469 ADLERLFDQWEVSFQVP----FWQL--HLVSRVYAFCFPHETKHKDPNLNLDLEHI---V 519
+ + FD ++ + + HL + E + LD + +
Sbjct: 455 --IPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFLEQKI 507
Query: 520 KPPAFSLE-SSDVNPLLQEEIDMDMGNDRPRDIKE-ERHVEKDSRARVSLSQSSFLTYCR 577
+ + + S + LQ +K + ++ + L +
Sbjct: 508 RHDSTAWNASGSILNTLQ-------------QLKFYKPYICDNDPKYERLVNA------- 547
Query: 578 ETFNIDWSAYWGIFLIKFLYALAMSLFYSNYISVL 612
++ FL + +L S Y +L
Sbjct: 548 --------------ILDFLPKIEENLICSKYTDLL 568
Score = 37.5 bits (86), Expect = 0.021
Identities = 53/345 (15%), Positives = 93/345 (26%), Gaps = 112/345 (32%)
Query: 502 HETKHKDPNLNLDLEHIVKPPAFSLESSDVNPLLQEEI--DMDMGN--DRPRDI--KEE- 554
H H D + ++ K D+ + ++ + D + D P+ I KEE
Sbjct: 2 HHHHHMDFETG-EHQYQYK---------DILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 555 RHV--EKDSRARVSLSQSSFLTYCRETF-----NIDWSAYWGIFLIKFLYA------LAM 601
H+ KD+ + + L+ E + Y KFL +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQRQP 105
Query: 602 SLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLIHIDSRNSYSSLYYSFILLTV 661
S+ YI ++ N Y VS L+ + + +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKN---------VLI 155
Query: 662 --------SILALYVSVNLYLFVLLLVSCKKFKEGEEKPKWAKKDLSFYNDADLERLFDQ 713
+ +AL V ++ D
Sbjct: 156 DGVLGSGKTWVALDV---------------------------------CLSYKVQCKMDF 182
Query: 714 ---WEVSLGKDAFCFPHETKHKDPNLNLDLGQIFAIQ-KCQGDVFGSNISGIYNSLTSIA 769
W ++L P L++ Q Q + S I + SI
Sbjct: 183 KIFW-LNLKNC----------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 770 KVITPLLGG-------IISDWVQDNYKVTFLVAFLFGAVGVVTTR 807
+ LL ++ VQ+ K AF ++TTR
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNA-KA--WNAFNLSCKILLTTR 273
Score = 32.5 bits (73), Expect = 0.70
Identities = 42/327 (12%), Positives = 88/327 (26%), Gaps = 96/327 (29%)
Query: 13 ILHSASSD--SETKSG--LESSFIVHFSRPGPRKLSIRINY--RTSAKKLSDLRLKFKDN 66
L D E + S I R G + + KL+ + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL----ATWDNWKHVNCDKLTTIIESSLNV 365
Query: 67 PDPESLLKLSKKGRTLMVF-VSVD----------GDPTRDEAESI-TKLWQTSLFNSHIQ 114
+P K+ + L VF S D + + + KL + SL +
Sbjct: 366 LEPAEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 115 AERYMVEDSRAIFLFKDGSQAWDAKDYL----VQQERCKSVTIENKVYPGKLTKEIKSLL 170
+ ++ + + + L V + + P L + S +
Sbjct: 423 ESTISIPS-----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 171 G----QQERCKSVTIENKVYPGKLTKEVSVGLTIIPTFTMGSLTPHKISFICFLDLFAAS 226
G E + +T+ V+ LD
Sbjct: 478 GHHLKNIEHPERMTLFRMVF---------------------------------LDF---- 500
Query: 227 LIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQ--------II-SAPTV-GYLSD----LY 272
+L ++ + A S + LQ I + P ++ L
Sbjct: 501 -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVY 299
+ L+ +T ++ L+ ++++
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIF 580
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 44.2 bits (104), Expect = 1e-04
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
+ + FL A +L L + L+NF G I S F I G L
Sbjct: 31 LCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS 89
Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKHT------QVLCKAYISDICV 327
K ++T LF + L + + ++ + L+GLF + +++ +
Sbjct: 90 YKAGIITGLFLYALGAAL--FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147
Query: 328 DSTKAFSQLMMVTF--LGFFIGPAIGGHVI 355
+S+ F + TF G I G +I
Sbjct: 148 ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 43.1 bits (102), Expect = 3e-04
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 242 LSNFTIGAIASTFS----LLQIISAPTVGYLSDLYGRKTILLTCLFTCIVSYLLLGLYK- 296
S +G S S + I G +SD + L L L +G
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIM----GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114
Query: 297 ---SVYVIFFVRILLGLF 311
S+ V+F + L G F
Sbjct: 115 ATSSIAVMFVLLFLCGWF 132
Score = 36.2 bits (84), Expect = 0.046
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 16/161 (9%)
Query: 235 YLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRKT-----ILLTCLFTCIVSY 289
YL+ + + I G++SD R + L T
Sbjct: 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337
Query: 290 LLLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDIC----VDSTKAFSQLMMVTFLGF 344
+ + V I++G + +L + ++ + F + G
Sbjct: 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF-TGLFGYLGGS 396
Query: 345 FIGPAIGGHVI---HYENGFFYICCMTSALFVVNFVYTYWV 382
AI G+ + ++ GF + + ++ V + +
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVM--IGGSILAVILLIVVMI 435
Score = 29.6 bits (67), Expect = 4.2
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 752 DVFGSN----ISGIYNSLTSI-AKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTT 806
++ +G + V + G D+ + F+V + V+
Sbjct: 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILL 430
Query: 807 RVVMMKSRRIQREMKR 822
VVM+ +R ++ +
Sbjct: 431 IVVMIGEKRRHEQLLQ 446
Score = 28.9 bits (65), Expect = 8.8
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 758 ISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVV 804
I ++N ++ I PLL + W D + + + +
Sbjct: 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVAL 201
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.020
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 15/86 (17%)
Query: 91 DPTRDEAESITKLWQTSLFNSHIQAERYMVEDSRAIFLFKDGSQAWDA--KDYLVQQERC 148
D E ESI K W+ +Q E + + + + Q E+
Sbjct: 78 DRLTQEPESIRK-WREE-QRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 149 KSVTIENKVYPGKLTKEIKSLLGQQE 174
K N+ K+ Q +
Sbjct: 135 KI---NNR-------IADKAFYQQPD 150
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Length = 249
Score = 35.2 bits (82), Expect = 0.057
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 635 SFSNVLIHIDSRNSYSSLYYSFILLTVSILALYVSVNLY-LFVLLLVSCKKFKEGEEKPK 693
+ +N ++ + + SL LA V + Y + + +
Sbjct: 128 ALANAIVTVPVNPEFFSL----------NLAQCVLLLAYEWRRQHDETPPEVIDMARVD- 176
Query: 694 WAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHK 732
+A ++E+L D +E L F FP E
Sbjct: 177 FASGL-------EVEKLGDHFEEKLEAAGFFFPPEKAPG 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 96 EAESITKLWQTSLFNSHIQAERYMVEDSR---AI 126
E +++ KL Q SL + Y +DS AI
Sbjct: 18 EKQALKKL-QASL-------KLY-ADDSAPALAI 42
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004,
methylase family protein, haemophilus influenzae R
structural genomics; 2.01A {Haemophilus influenzae}
Length = 244
Score = 28.3 bits (64), Expect = 9.4
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 19/100 (19%)
Query: 635 SFSNVLIHIDSRNSYSSLYYSFILLTVSILALYVSVNLY-LFVLLLVSCKKFKEGE-EKP 692
+ ++I + YSSL LA+ V + Y L + LV K +
Sbjct: 126 LKCHYHLNIPANPDYSSLN----------LAMAVQLVSYELRMAFLVQNNKKNSLSLIEK 175
Query: 693 KWAKKDLSFYNDADLERLFDQWEVSLGKDAFCFPHETKHK 732
+ D L FD E F K
Sbjct: 176 NYPTTD-------QLAYFFDYTERIYQSLGFIQNQGVMRK 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,315,246
Number of extensions: 739114
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1198
Number of HSP's successfully gapped: 40
Length of query: 822
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 720
Effective length of database: 3,853,851
Effective search space: 2774772720
Effective search space used: 2774772720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)