RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3157
         (822 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 75.6 bits (184), Expect = 6e-15
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 9/181 (4%)

Query: 213 KISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLY 272
                 F   F      P    +L     +S    G I +  SL  ++  P  G LSD  
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 273 GRKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLF---------KHTQVLCKAYIS 323
           G +  LL  +   +V +    ++    ++ +  ++  +                 +A+I 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 324 DICVDSTKAFSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
            +   S   F +  M   +G+ +G +I G +    N F +      AL +   ++     
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 384 T 384
            
Sbjct: 191 A 191



 Score = 34.7 bits (78), Expect = 0.039
 Identities = 21/174 (12%), Positives = 41/174 (23%), Gaps = 5/174 (2%)

Query: 214 ISFICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYG 273
                                             G + +   LL          + +  G
Sbjct: 228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287

Query: 274 RKTILLTCLFTCIVSYLLLGLYKSVYVIFFVRILLGLFKH-TQVLCKAYISDICVDSTKA 332
            K  LL       V  +      S   +  ++ L         V C  YI+        A
Sbjct: 288 GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347

Query: 333 FSQLMMVTF---LGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVV 383
              L+   F   L       + G++     GF     +   + +   + + + +
Sbjct: 348 TIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTL 400



 Score = 32.8 bits (73), Expect = 0.15
 Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 755 GSNISGIYNSLTSIAKVITPLLGGIISDWVQDNYKVTFLVAFLFGAVGVVTTRVVMMKSR 814
            +     +     +A +   +L G + + +   ++  +LV  L      + +   +    
Sbjct: 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGPG 404

Query: 815 RI 816
            +
Sbjct: 405 PL 406



 Score = 32.8 bits (73), Expect = 0.16
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 586 AYWGIFLIKFLYALAMSLFYSNYISVLTHNFHANSQVTGYTVSFQGLVGSFSNVLI--HI 643
            +W   L  F Y   M  ++  +   L    H +   TG   +   L       L     
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67

Query: 644 DSRNSYSSLYYSFILLTVSILALYVSVNLYLFVLLLV 680
           D       L +    + V     ++ +   L    ++
Sbjct: 68  DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 12/186 (6%)

Query: 216 FICFLDLFAASLIVPLVNNYLRTQVLLSNFTIGAIASTFSLLQIISAPTVGYLSDLYGRK 275
              +L     +L +P +      +   S   +G   S  S+    S   +G +SD    +
Sbjct: 35  AAYYLVRKNFALAMPYL-----VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89

Query: 276 TILLTCLFTCIVSYLLLGLYK----SVYVIFFVRILLGLFKHTQVLCK-AYISDICVDST 330
             L   L       L +G       S+ V+F +  L G F+          +        
Sbjct: 90  VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE 149

Query: 331 KA--FSQLMMVTFLGFFIGPAIGGHVIHYENGFFYICCMTSALFVVNFVYTYWVVTDVKK 388
           +    S       +G  I P +    + + N +     M +   ++  ++ + ++ D  +
Sbjct: 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209

Query: 389 YPTRTS 394
                 
Sbjct: 210 SCGLPP 215


>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
           TRIO {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 26.9 bits (59), Expect = 4.5
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 408 LLQEEIDMDMGNDRPRDIKEERHLVIIFLSVCHLGLVSCKKFKEGEEKPKWAKKDLSFYN 467
           +LQE   +       R  +E RH   +FL    + LV  K+ K+   + K+  K   F +
Sbjct: 14  ILQESFQVWDPKTLIRKGRE-RH---LFL--FEMSLVFSKEVKDSSGRSKYLYKSKLFTS 67

Query: 468 DADLERLFDQWEVSFQVPFWQLHLVSRVYAFCF 500
           +  +    +     F +  W     +       
Sbjct: 68  ELGVTEHVEGDPCKFAL--WVGRTPTSDNKIVL 98


>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
           [TaxId: 10991]}
          Length = 268

 Score = 27.6 bits (61), Expect = 6.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 242 LSNFTIGAIASTFSLLQIISAPTVGYLSDL 271
            S  T G   +  ++   +S  + GY+SD 
Sbjct: 28  FSGLTTGDFNALSNMFTQLSVSSAGYVSDP 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,033,767
Number of extensions: 143889
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 9
Length of query: 822
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 729
Effective length of database: 1,130,706
Effective search space: 824284674
Effective search space used: 824284674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.1 bits)