BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy316
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 19/267 (7%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P + + M L N ++
Sbjct: 25 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 84
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + ++S GV + +++KKLS P AP
Sbjct: 85 SDVLFLAVKPHIIPFILDEIGAD---IEDRHIVVSCAAGVTISSIEKKLSAFRP----AP 137
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L +++ G + E ++++ +
Sbjct: 138 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLME--QLLSSVGFCTEVEEDLIDAVTGL 195
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ ++ + H+ Q HP
Sbjct: 196 SGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKM-------LLHSEQ-HPG 247
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD + SPGG+TI +H LE G R+
Sbjct: 248 QLKDNVSSPGGATIHALHVLESGGFRS 274
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 19/267 (7%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P + + M L N ++
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + ++S GV + +++KKLS P AP
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGAD---IEDRHIVVSCAAGVTISSIEKKLSAFRP----AP 117
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L +++ G + E ++++ +
Sbjct: 118 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLME--QLLSSVGFCTEVEEDLIDAVTGL 175
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ ++ + H+ Q HP
Sbjct: 176 SGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKM-------LLHSEQ-HPG 227
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD + SPGG+TI +H LE G R+
Sbjct: 228 QLKDNVSSPGGATIHALHVLESGGFRS 254
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 19/267 (7%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P + + M L N ++
Sbjct: 5 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 64
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + ++S GV + +++KKLS P AP
Sbjct: 65 SDVLFLAVKPHIIPFILDEIGAD---IEDRHIVVSCAAGVTISSIEKKLSAFRP----AP 117
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L +++ G + E ++++ +
Sbjct: 118 RVIRCMTNTPVVVREGATVYATGTHAQVEDGRLME--QLLSSVGFCTEVEEDLIDAVTGL 175
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ ++ + H+ Q HP
Sbjct: 176 SGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKM-------LLHSEQ-HPG 227
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD + SPGG+TI +H LE G R+
Sbjct: 228 QLKDNVSSPGGATIHALHVLESGGFRS 254
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 31/277 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR-IIKE 124
K+G IG G MA A+ L +T P ++I S S E + +H+ +I +
Sbjct: 5 KIGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ V L +KPQ ++ ++ L+ + IISM G+ L+ +L+ V D P
Sbjct: 61 VDLVILGIKPQLFETVLK-------PLHFKQPIISMAAGISLQ----RLATFVGQ--DLP 107
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK-IMEQGGIVEIIPESMMNSFGA 243
++R+MPN + + T + + + +E L ++ + + G I E ++F A
Sbjct: 108 -LLRIMPNMNAQILQSSTALTGNALVSQE---LQARVRDLTDSFGSTFDISEKDFDTFTA 163
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
+AGS AY++L ++A+A VK GIP+ AL I Q + S + ++Q+ P
Sbjct: 164 LAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASAS-------NLKTSSQS-P 215
Query: 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
D ICSPGG+TIAG+ LE+ G+ SSA +T
Sbjct: 216 HDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKT 252
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 31/277 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR-IIKE 124
K+G IG G A A+ L +T P ++I S S E + +H+ +I +
Sbjct: 5 KIGIIGVGKXASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAXSHQDLIDQ 60
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ V L +KPQ ++ ++ L+ + IIS G+ L+ +L+ V D P
Sbjct: 61 VDLVILGIKPQLFETVLK-------PLHFKQPIISXAAGISLQ----RLATFVGQ--DLP 107
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK-IMEQGGIVEIIPESMMNSFGA 243
++R+ PN + + T + + + +E L ++ + + G I E ++F A
Sbjct: 108 -LLRIXPNXNAQILQSSTALTGNALVSQE---LQARVRDLTDSFGSTFDISEKDFDTFTA 163
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
+AGS AY++L ++A+A VK GIP+ AL I Q + S + ++Q+ P
Sbjct: 164 LAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASAS-------NLKTSSQS-P 215
Query: 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
D ICSPGG+TIAG+ LE+ G+ SSA +T
Sbjct: 216 HDFIDAICSPGGTTIAGLXELERLGLTATVSSAIDKT 252
>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr38b
Length = 247
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 35/271 (12%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS--------APSERFKLHWPEPMDFALND 117
++GFIG GN A I + QII S SE++ L D
Sbjct: 4 QIGFIGCGNXGXAXIGGXINKNIVSSNQIICSDLNTANLKNASEKYGLT-------TTTD 56
Query: 118 NHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLV 177
N+ + K A+ + L++KP S I + K + + I+++ G +E+ +
Sbjct: 57 NNEVAKNADILILSIKPDLYASIINEI---KEIIKNDAIIVTIAAGKSIESTENAF---- 109
Query: 178 PNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESM 237
N ++RV PNT G+G + +C + + ++ L + I G EI+ E +
Sbjct: 110 ---NKKVKVVRVXPNTPALVGEGXSALCPNEXVTEK--DLEDVLNIFNSFGQTEIVSEKL 164
Query: 238 MNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDH 297
+ +++GS AY++ +++A AD AV G PR+ A + AQ + GS + V + +
Sbjct: 165 XDVVTSVSGSSPAYVYXIIEAXADAAVLDGXPRNQAYKFAAQAVLGSAKXVLETGI---- 220
Query: 298 AAQAHPAVIKDQICSPGGSTIAGIHALEKAG 328
HP +KD +CSPGG+TI + LE+ G
Sbjct: 221 ----HPGELKDXVCSPGGTTIEAVATLEEKG 247
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 26/283 (9%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIK 123
+ + FIG GN A+ + LI G P +I + S ++ + DN +
Sbjct: 4 SNITFIGGGNXARNIVVGLIANGYD-PNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGAL 62
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKKKLSVLVPNPND 182
A+ V LA+KP + + L K L+ ++ +IS+ VGV ++K L
Sbjct: 63 NADVVVLAVKPHQIKXVCEEL---KDILSETKILVISLAVGVTTPLIEKWLG-------K 112
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
A I+R PNT G TG+ + +DK+ ++L +I G ++ + E +
Sbjct: 113 ASRIVRAXPNTPSSVRAGATGLFANETVDKDQKNLAESIX-RAVGLVIWVSSEDQIEKIA 171
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
A++GSG AY+FL+ +A+ + A + G+ ++ A + Q + G+ R +
Sbjct: 172 ALSGSGPAYIFLIXEALQEAAEQLGLTKETAELLTEQTVLGAA--------RXALETEQS 223
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPF----SSAARRTK 341
++ + SPGG+T I LE +R F ++A R K
Sbjct: 224 VVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALTAAVNRAK 266
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 26/242 (10%)
Query: 101 ERFKLHWPEPMDFALN---DNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCI 157
E + P + LN N + + + + A+KP D A L N K L SS+ +
Sbjct: 32 ENLFYYGPSKKNTTLNYXSSNEELARHCDIIVCAVKP---DIAGSVLNNIKPYL-SSKLL 87
Query: 158 ISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDK-ESEH 216
IS+ G+++ L++ + I+ V PNT G+G C + +++ + ++
Sbjct: 88 ISICGGLNIGKLEEXVG-------SENKIVWVXPNTPCLVGEGSFIYCSNKNVNSTDKKY 140
Query: 217 LNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRI 276
+N I GI+ I E + AI+G G AY++L ++++ D VK G+ R+++ +
Sbjct: 141 VN---DIFNSCGIIHEIKEKDXDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNL 197
Query: 277 GAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
Q +KGS + V K D Q +KD I SPGG T G+++LEK + +A
Sbjct: 198 VLQTIKGSVEXVKKS----DQPVQQ----LKDNIVSPGGITAVGLYSLEKNSFKYTVXNA 249
Query: 337 AR 338
Sbjct: 250 VE 251
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 24/200 (12%)
Query: 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTII 187
+ LA+KPQ ++A + + + ++S+ G+ + TL + L I+
Sbjct: 61 LILAVKPQDXEAACKNIRTNGA------LVLSVAAGLSVGTLSRYL-------GGTRRIV 107
Query: 188 RVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGI-VEIIPESMMNSFGAIAG 246
RV PNT K G G++G + + + + A +I + G+ V + E + I+G
Sbjct: 108 RVXPNTPGKIGLGVSGXYAEAEVSETDRRI--ADRIXKSVGLTVWLDDEEKXHGITGISG 165
Query: 247 SGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVI 306
SG AY+F ++DA+ + A++QG A + KG+ L + + +
Sbjct: 166 SGPAYVFYLLDALQNAAIRQGFDXAEARALSLATFKGAVALAEQTGEDFEK--------L 217
Query: 307 KDQICSPGGSTIAGIHALEK 326
+ + S GG+T + A +
Sbjct: 218 QKNVTSKGGTTHEAVEAFRR 237
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 16/67 (23%)
Query: 2 KGFIELFAYDETMR--------IIIKAAADPVKKSDTVTEDSESEQHTGARPV------R 47
GF+++F YDET+R +K A +P K TVT + S+ GA + R
Sbjct: 201 NGFLKIFDYDETIRPDTTLESLAALKPAFNP--KGGTVTAGTSSQITDGASCMIVMSAQR 258
Query: 48 KSDMGME 54
D+G+E
Sbjct: 259 AKDLGLE 265
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 50 DMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTG 87
D+G E+ +P VGFIG GNM +A +L++ G
Sbjct: 12 DLGTENLYFQSMP----VGFIGLGNMGNPMAKNLMKHG 45
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100
+VGFIG G +AQ +A+ L G+ + + +PS
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPS 36
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 225 EQGGIVEIIPESMM---NSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLL 281
++GG V +P M SF AI GSG +Y++ +DA ++G+ +D L+ A L
Sbjct: 106 QEGGQVYSVPMGGMMVRQSF-AIGGSGSSYIYGYVDA----TYREGMTKDECLQFTANAL 160
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 108 PEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVND 147
P ++ + +DNHR + E E FL P + +++Q V +
Sbjct: 18 PRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTE 57
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVG +G+G+ A+++AT L+ +G + ++ S +R +P + +
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKV---VVGSRNPKRTARLFPSAAQVTFQEE--AVSSP 84
Query: 126 EYVFLAMKPQYLDS 139
E +F+A+ ++ S
Sbjct: 85 EVIFVAVFREHYSS 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,693,655
Number of Sequences: 62578
Number of extensions: 385902
Number of successful extensions: 903
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 18
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)