Query psy316
Match_columns 341
No_of_seqs 225 out of 2433
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:54:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0345 ProC Pyrroline-5-carbo 100.0 2.2E-55 4.7E-60 404.1 29.7 256 64-341 1-257 (266)
2 PRK12491 pyrroline-5-carboxyla 100.0 1.2E-54 2.5E-59 405.3 30.6 259 63-341 1-260 (272)
3 PTZ00431 pyrroline carboxylate 100.0 2.4E-48 5.2E-53 361.0 30.4 249 65-341 4-253 (260)
4 PRK06928 pyrroline-5-carboxyla 100.0 2.4E-48 5.2E-53 364.1 27.7 254 65-340 2-259 (277)
5 PRK07679 pyrroline-5-carboxyla 100.0 8.7E-46 1.9E-50 347.2 30.2 257 65-341 4-262 (279)
6 PLN02688 pyrroline-5-carboxyla 100.0 4.3E-45 9.3E-50 339.9 30.6 255 65-341 1-257 (266)
7 KOG3124|consensus 100.0 1E-45 2.3E-50 331.1 22.8 255 65-340 1-257 (267)
8 TIGR00112 proC pyrroline-5-car 100.0 3.5E-45 7.6E-50 336.9 26.0 237 85-341 3-240 (245)
9 PRK07680 late competence prote 100.0 5.6E-44 1.2E-48 334.0 29.9 253 65-340 1-256 (273)
10 PRK11880 pyrroline-5-carboxyla 100.0 1.9E-43 4.1E-48 329.0 30.2 255 63-340 1-257 (267)
11 PRK07634 pyrroline-5-carboxyla 100.0 1.1E-41 2.4E-46 313.1 27.7 240 64-325 4-245 (245)
12 PRK06476 pyrroline-5-carboxyla 100.0 2.8E-41 6E-46 313.2 27.0 246 65-341 1-250 (258)
13 TIGR00465 ilvC ketol-acid redu 100.0 2.4E-31 5.2E-36 252.4 21.1 219 64-314 3-241 (314)
14 PRK14806 bifunctional cyclohex 99.9 2.9E-25 6.3E-30 233.8 19.3 239 62-334 1-263 (735)
15 PRK06545 prephenate dehydrogen 99.9 1.1E-23 2.4E-28 204.3 17.8 228 65-326 1-248 (359)
16 PRK07417 arogenate dehydrogena 99.9 3.9E-22 8.4E-27 187.1 18.4 230 65-326 1-246 (279)
17 PRK08507 prephenate dehydrogen 99.9 1E-21 2.3E-26 183.8 21.2 230 65-326 1-244 (275)
18 PRK08655 prephenate dehydrogen 99.9 8.4E-22 1.8E-26 195.5 21.6 234 65-326 1-243 (437)
19 COG2084 MmsB 3-hydroxyisobutyr 99.9 1.8E-21 4E-26 181.0 21.4 227 65-325 1-242 (286)
20 PF14748 P5CR_dimer: Pyrroline 99.9 2.3E-22 5E-27 162.0 12.0 101 233-341 1-101 (107)
21 PRK07502 cyclohexadienyl dehyd 99.9 3.9E-21 8.5E-26 182.6 19.8 242 63-333 5-266 (307)
22 PRK05479 ketol-acid reductoiso 99.9 5.7E-20 1.2E-24 174.7 22.9 205 63-288 16-239 (330)
23 PLN02256 arogenate dehydrogena 99.8 3.5E-19 7.6E-24 168.8 20.6 236 63-334 35-287 (304)
24 COG0287 TyrA Prephenate dehydr 99.8 1.4E-18 3.1E-23 162.2 22.8 232 63-326 2-248 (279)
25 KOG0409|consensus 99.8 1.6E-18 3.5E-23 159.3 20.2 230 62-324 33-276 (327)
26 PRK15461 NADH-dependent gamma- 99.8 3E-18 6.4E-23 162.2 22.8 228 65-324 2-242 (296)
27 PRK15059 tartronate semialdehy 99.8 5.1E-18 1.1E-22 160.2 21.6 196 65-284 1-211 (292)
28 PRK12490 6-phosphogluconate de 99.8 5.6E-18 1.2E-22 160.5 21.5 199 65-284 1-217 (299)
29 PRK09599 6-phosphogluconate de 99.8 5.6E-17 1.2E-21 153.8 24.0 195 65-281 1-214 (301)
30 PRK11199 tyrA bifunctional cho 99.8 4.2E-17 9.2E-22 159.0 23.1 215 63-326 97-322 (374)
31 PF03446 NAD_binding_2: NAD bi 99.8 1.4E-18 3E-23 150.5 11.3 149 64-232 1-158 (163)
32 PLN02350 phosphogluconate dehy 99.8 1.6E-17 3.6E-22 166.0 20.6 194 65-278 7-225 (493)
33 PRK06130 3-hydroxybutyryl-CoA 99.8 1.8E-17 4E-22 157.6 19.9 194 64-280 4-219 (311)
34 PRK07531 bifunctional 3-hydrox 99.8 1.5E-17 3.2E-22 167.8 20.3 197 62-280 2-220 (495)
35 TIGR00872 gnd_rel 6-phosphoglu 99.8 7.8E-17 1.7E-21 152.6 22.8 196 65-281 1-212 (298)
36 PRK11559 garR tartronate semia 99.8 1.1E-16 2.3E-21 151.3 22.8 200 63-284 1-214 (296)
37 TIGR01505 tartro_sem_red 2-hyd 99.8 1.4E-16 3.1E-21 150.2 22.0 198 66-286 1-213 (291)
38 TIGR01692 HIBADH 3-hydroxyisob 99.8 8E-17 1.7E-21 151.8 19.6 194 69-284 1-208 (288)
39 PLN02712 arogenate dehydrogena 99.7 1.4E-16 2.9E-21 165.4 22.3 239 63-337 368-623 (667)
40 PF03807 F420_oxidored: NADP o 99.7 5.7E-18 1.2E-22 133.3 8.5 93 66-163 1-96 (96)
41 PRK00094 gpsA NAD(P)H-dependen 99.7 3.6E-16 7.8E-21 149.2 22.1 196 65-277 2-239 (325)
42 PTZ00142 6-phosphogluconate de 99.7 1E-15 2.2E-20 152.8 25.8 194 65-278 2-219 (470)
43 PLN02858 fructose-bisphosphate 99.7 2.8E-16 6.1E-21 173.7 22.3 227 64-324 4-247 (1378)
44 PRK12557 H(2)-dependent methyl 99.7 2.3E-16 5.1E-21 151.6 18.9 201 65-290 1-250 (342)
45 TIGR01915 npdG NADPH-dependent 99.7 7.3E-17 1.6E-21 146.2 14.1 148 65-231 1-184 (219)
46 PLN02712 arogenate dehydrogena 99.7 1.3E-15 2.8E-20 158.1 24.1 235 63-334 51-303 (667)
47 PRK14618 NAD(P)H-dependent gly 99.7 8.8E-16 1.9E-20 147.2 20.0 194 65-278 5-239 (328)
48 PRK05808 3-hydroxybutyryl-CoA 99.7 2.8E-16 6.2E-21 147.5 16.0 150 65-232 4-179 (282)
49 PLN02858 fructose-bisphosphate 99.7 1E-15 2.3E-20 169.2 22.2 230 63-324 323-567 (1378)
50 TIGR00873 gnd 6-phosphoglucona 99.7 3.1E-15 6.8E-20 149.3 23.6 193 66-278 1-216 (467)
51 PRK08818 prephenate dehydrogen 99.7 2.3E-15 5.1E-20 145.7 20.9 219 64-326 4-238 (370)
52 PF02153 PDH: Prephenate dehyd 99.7 1.3E-15 2.9E-20 141.4 17.3 218 79-326 1-235 (258)
53 PLN02545 3-hydroxybutyryl-CoA 99.7 5.4E-15 1.2E-19 139.7 20.7 152 65-233 5-181 (295)
54 PRK06129 3-hydroxyacyl-CoA deh 99.7 1.5E-14 3.2E-19 137.7 22.0 194 65-282 3-224 (308)
55 PRK12439 NAD(P)H-dependent gly 99.6 1.8E-14 4E-19 138.9 21.5 154 64-236 7-184 (341)
56 PRK06522 2-dehydropantoate 2-r 99.6 3.6E-14 7.8E-19 134.0 20.2 166 65-250 1-201 (304)
57 PRK06035 3-hydroxyacyl-CoA deh 99.6 1.1E-14 2.3E-19 137.5 15.9 152 65-234 4-185 (291)
58 PRK07530 3-hydroxybutyryl-CoA 99.6 7.6E-14 1.7E-18 131.7 21.4 152 64-233 4-181 (292)
59 PRK14620 NAD(P)H-dependent gly 99.6 2E-13 4.3E-18 130.8 21.8 154 65-236 1-179 (326)
60 PRK08293 3-hydroxybutyryl-CoA 99.6 2.3E-13 5.1E-18 128.2 21.7 156 65-237 4-187 (287)
61 PRK09260 3-hydroxybutyryl-CoA 99.6 1.5E-13 3.4E-18 129.4 19.6 154 65-235 2-182 (288)
62 COG0240 GpsA Glycerol-3-phosph 99.6 2.9E-13 6.3E-18 127.6 21.2 156 64-236 1-178 (329)
63 PF10727 Rossmann-like: Rossma 99.6 1.8E-15 3.9E-20 125.2 4.7 104 64-174 10-117 (127)
64 COG2085 Predicted dinucleotide 99.6 5.1E-14 1.1E-18 124.7 14.0 148 64-231 1-175 (211)
65 PRK14619 NAD(P)H-dependent gly 99.6 2.6E-13 5.6E-18 129.1 18.7 181 64-276 4-214 (308)
66 TIGR01724 hmd_rel H2-forming N 99.6 7.5E-13 1.6E-17 124.1 21.1 211 65-290 1-250 (341)
67 PRK08229 2-dehydropantoate 2-r 99.5 4.1E-13 8.9E-18 129.2 17.1 147 63-233 1-174 (341)
68 TIGR03026 NDP-sugDHase nucleot 99.5 7.4E-13 1.6E-17 130.9 18.4 195 65-279 1-245 (411)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 7E-14 1.5E-18 120.3 9.2 121 66-200 1-142 (157)
70 PTZ00345 glycerol-3-phosphate 99.5 2.9E-12 6.3E-17 124.2 21.2 158 64-236 11-203 (365)
71 PRK12921 2-dehydropantoate 2-r 99.5 1.5E-12 3.2E-17 123.3 18.4 153 65-236 1-177 (305)
72 PRK08268 3-hydroxy-acyl-CoA de 99.5 3.7E-12 7.9E-17 128.9 21.2 190 65-281 8-226 (507)
73 PRK09287 6-phosphogluconate de 99.5 8.8E-12 1.9E-16 124.3 23.5 184 75-278 1-208 (459)
74 PRK05708 2-dehydropantoate 2-r 99.5 4.3E-12 9.3E-17 120.6 19.3 187 63-269 1-229 (305)
75 TIGR03376 glycerol3P_DH glycer 99.5 1.1E-11 2.3E-16 119.4 22.1 158 66-236 1-194 (342)
76 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.5 6.9E-12 1.5E-16 126.6 21.2 151 65-234 6-184 (503)
77 PRK07066 3-hydroxybutyryl-CoA 99.5 1.2E-11 2.6E-16 118.0 21.2 152 65-233 8-182 (321)
78 PF02737 3HCDH_N: 3-hydroxyacy 99.4 1.8E-12 4E-17 114.0 13.2 149 66-232 1-175 (180)
79 PRK11064 wecC UDP-N-acetyl-D-m 99.4 8.3E-12 1.8E-16 123.5 18.7 199 65-278 4-248 (415)
80 PRK06249 2-dehydropantoate 2-r 99.4 2E-11 4.3E-16 116.5 19.8 169 64-250 5-213 (313)
81 COG1023 Gnd Predicted 6-phosph 99.4 1.6E-10 3.5E-15 103.6 22.1 226 65-314 1-244 (300)
82 PRK07819 3-hydroxybutyryl-CoA 99.4 6.3E-11 1.4E-15 111.7 20.1 153 65-235 6-187 (286)
83 COG1893 ApbA Ketopantoate redu 99.3 1.2E-10 2.5E-15 110.9 18.7 166 65-249 1-202 (307)
84 PRK13403 ketol-acid reductoiso 99.3 2.6E-10 5.6E-15 107.8 19.1 205 63-289 15-238 (335)
85 PRK15182 Vi polysaccharide bio 99.3 1.2E-10 2.6E-15 115.5 16.7 197 65-277 7-243 (425)
86 PRK15057 UDP-glucose 6-dehydro 99.3 5E-10 1.1E-14 109.8 20.2 185 65-278 1-233 (388)
87 KOG2380|consensus 99.3 1.4E-10 3E-15 108.5 14.5 163 65-243 53-228 (480)
88 PRK11730 fadB multifunctional 99.2 8.3E-10 1.8E-14 116.2 19.2 152 64-233 313-491 (715)
89 PRK06444 prephenate dehydrogen 99.2 1.1E-09 2.3E-14 97.6 16.8 184 65-326 1-190 (197)
90 COG1250 FadB 3-hydroxyacyl-CoA 99.2 1.4E-09 3E-14 102.7 18.2 152 63-232 2-179 (307)
91 TIGR02440 FadJ fatty oxidation 99.2 1.5E-09 3.2E-14 114.0 20.1 152 65-234 305-484 (699)
92 TIGR02437 FadB fatty oxidation 99.2 1.6E-09 3.5E-14 113.9 19.9 150 65-232 314-489 (714)
93 TIGR02441 fa_ox_alpha_mit fatt 99.1 2.3E-09 5.1E-14 113.0 19.2 150 65-232 336-511 (737)
94 COG0362 Gnd 6-phosphogluconate 99.1 5.5E-09 1.2E-13 99.8 18.8 249 63-337 2-285 (473)
95 PRK11154 fadJ multifunctional 99.1 4.2E-09 9.1E-14 110.8 20.0 152 64-233 309-488 (708)
96 PF02558 ApbA: Ketopantoate re 99.1 4E-10 8.7E-15 95.7 8.4 99 67-174 1-115 (151)
97 PF07991 IlvN: Acetohydroxy ac 99.1 7.9E-10 1.7E-14 94.3 9.6 94 64-166 4-99 (165)
98 PRK05225 ketol-acid reductoiso 99.0 2.1E-08 4.5E-13 98.5 18.7 207 62-290 34-266 (487)
99 COG0059 IlvC Ketol-acid reduct 99.0 2.9E-08 6.3E-13 92.1 17.7 229 63-314 17-266 (338)
100 PLN02353 probable UDP-glucose 99.0 3.2E-08 7E-13 99.3 19.4 202 65-278 2-252 (473)
101 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 6.3E-09 1.4E-13 91.9 8.3 94 65-166 1-124 (185)
102 PRK11861 bifunctional prephena 98.9 3.7E-08 8E-13 103.3 14.8 172 128-326 1-187 (673)
103 PRK08269 3-hydroxybutyryl-CoA 98.9 2E-07 4.4E-12 89.0 18.5 181 75-279 1-217 (314)
104 PRK13304 L-aspartate dehydroge 98.8 1.8E-08 3.8E-13 94.0 9.9 79 65-144 2-81 (265)
105 COG1004 Ugd Predicted UDP-gluc 98.8 7.6E-07 1.7E-11 85.9 19.8 242 65-340 1-290 (414)
106 PRK12480 D-lactate dehydrogena 98.7 5.8E-08 1.3E-12 93.4 10.7 101 63-174 145-249 (330)
107 KOG2711|consensus 98.7 5.7E-07 1.2E-11 84.8 16.0 156 63-233 20-213 (372)
108 TIGR00745 apbA_panE 2-dehydrop 98.7 1.5E-06 3.3E-11 81.4 19.1 153 74-247 1-191 (293)
109 PRK13302 putative L-aspartate 98.7 4.9E-08 1.1E-12 91.3 8.6 79 64-144 6-87 (271)
110 cd01065 NAD_bind_Shikimate_DH 98.7 1.3E-08 2.7E-13 86.7 3.5 91 64-161 19-116 (155)
111 COG4007 Predicted dehydrogenas 98.7 4.7E-06 1E-10 75.8 19.9 209 65-290 2-251 (340)
112 PRK07574 formate dehydrogenase 98.6 1.3E-07 2.8E-12 92.5 9.9 104 63-174 191-299 (385)
113 PLN03139 formate dehydrogenase 98.6 1.7E-07 3.7E-12 91.7 9.9 104 63-174 198-306 (386)
114 PRK13243 glyoxylate reductase; 98.6 1.2E-07 2.7E-12 91.2 8.9 103 63-174 149-255 (333)
115 PF01408 GFO_IDH_MocA: Oxidore 98.6 4.1E-07 8.8E-12 73.9 10.3 102 65-173 1-106 (120)
116 COG0677 WecC UDP-N-acetyl-D-ma 98.6 3.8E-06 8.3E-11 80.9 18.1 204 63-278 8-251 (436)
117 PRK08605 D-lactate dehydrogena 98.5 2.7E-07 5.8E-12 88.9 8.5 101 63-174 145-251 (332)
118 cd05213 NAD_bind_Glutamyl_tRNA 98.5 2.7E-07 5.9E-12 88.0 8.0 95 64-163 178-275 (311)
119 PF02826 2-Hacid_dh_C: D-isome 98.5 1.4E-07 3E-12 82.8 5.4 104 63-174 35-142 (178)
120 TIGR02853 spore_dpaA dipicolin 98.5 4.4E-07 9.5E-12 85.6 9.1 88 64-162 151-241 (287)
121 KOG2653|consensus 98.5 8.4E-06 1.8E-10 77.3 16.2 252 65-338 7-289 (487)
122 COG1712 Predicted dinucleotide 98.4 1.8E-06 3.8E-11 77.3 10.7 93 65-162 1-94 (255)
123 PRK15469 ghrA bifunctional gly 98.4 9.6E-07 2.1E-11 84.3 9.6 102 64-174 136-241 (312)
124 KOG2304|consensus 98.4 2.7E-07 5.9E-12 82.4 4.9 152 64-232 11-193 (298)
125 PRK06436 glycerate dehydrogena 98.4 1.4E-06 3.1E-11 82.7 9.2 98 63-174 121-224 (303)
126 PF01488 Shikimate_DH: Shikima 98.3 5.9E-07 1.3E-11 75.2 4.7 69 64-135 12-86 (135)
127 PRK00048 dihydrodipicolinate r 98.3 4.6E-06 1E-10 77.4 10.8 97 65-172 2-102 (257)
128 PRK06141 ornithine cyclodeamin 98.3 1.1E-06 2.4E-11 84.0 6.6 85 65-159 126-217 (314)
129 TIGR01327 PGDH D-3-phosphoglyc 98.3 1.9E-06 4.1E-11 87.9 8.3 103 63-174 137-244 (525)
130 COG0373 HemA Glutamyl-tRNA red 98.3 2.2E-06 4.7E-11 84.0 7.8 67 64-133 178-247 (414)
131 PRK13581 D-3-phosphoglycerate 98.3 2.3E-06 5E-11 87.3 8.3 102 63-174 139-245 (526)
132 PRK13301 putative L-aspartate 98.3 7.2E-06 1.6E-10 75.8 10.6 79 63-144 1-82 (267)
133 PF01113 DapB_N: Dihydrodipico 98.3 6E-06 1.3E-10 68.1 9.2 98 65-171 1-108 (124)
134 PRK08306 dipicolinate synthase 98.2 5E-06 1.1E-10 78.8 9.4 88 64-162 152-242 (296)
135 TIGR02371 ala_DH_arch alanine 98.2 2.6E-06 5.6E-11 81.8 7.4 87 65-160 129-221 (325)
136 COG0111 SerA Phosphoglycerate 98.2 4E-06 8.7E-11 80.3 8.6 102 63-174 141-248 (324)
137 PLN02928 oxidoreductase family 98.2 4.5E-06 9.8E-11 80.8 9.0 105 63-174 158-277 (347)
138 COG5495 Uncharacterized conser 98.2 8.2E-05 1.8E-09 66.9 15.9 204 64-290 10-225 (289)
139 PRK00257 erythronate-4-phospha 98.2 4.1E-06 8.8E-11 81.9 8.1 99 64-174 116-222 (381)
140 COG1052 LdhA Lactate dehydroge 98.1 9.5E-06 2.1E-10 77.7 8.9 103 63-174 145-251 (324)
141 cd01075 NAD_bind_Leu_Phe_Val_D 98.1 8.8E-06 1.9E-10 72.8 8.1 98 64-174 28-129 (200)
142 PRK15438 erythronate-4-phospha 98.1 8.6E-06 1.9E-10 79.5 8.2 99 64-174 116-222 (378)
143 PRK06223 malate dehydrogenase; 98.1 8.8E-06 1.9E-10 77.4 8.1 94 65-166 3-124 (307)
144 PRK08410 2-hydroxyacid dehydro 98.1 1.1E-05 2.4E-10 77.0 8.4 101 62-174 143-247 (311)
145 PLN00203 glutamyl-tRNA reducta 98.1 7.3E-06 1.6E-10 83.2 7.6 95 64-162 266-370 (519)
146 KOG0069|consensus 98.1 1.2E-05 2.7E-10 76.7 8.7 105 62-174 160-268 (336)
147 PRK15409 bifunctional glyoxyla 98.1 1.3E-05 2.8E-10 77.0 8.8 104 62-174 143-251 (323)
148 PRK11790 D-3-phosphoglycerate 98.1 1.7E-05 3.6E-10 78.6 9.6 100 63-174 150-254 (409)
149 smart00859 Semialdhyde_dh Semi 98.1 1.3E-05 2.8E-10 65.7 7.1 93 66-164 1-102 (122)
150 cd05291 HicDH_like L-2-hydroxy 98.1 1.3E-05 2.8E-10 76.3 8.1 95 65-165 1-121 (306)
151 PRK14194 bifunctional 5,10-met 98.0 1.6E-05 3.5E-10 75.1 7.9 70 64-160 159-230 (301)
152 PF00056 Ldh_1_N: lactate/mala 98.0 1.1E-05 2.4E-10 68.1 5.8 95 65-165 1-122 (141)
153 PRK13940 glutamyl-tRNA reducta 98.0 7.6E-06 1.6E-10 81.0 5.5 69 64-135 181-253 (414)
154 PRK07340 ornithine cyclodeamin 98.0 1.3E-05 2.7E-10 76.4 6.7 86 65-160 126-216 (304)
155 PRK06932 glycerate dehydrogena 98.0 2.4E-05 5.2E-10 74.8 8.6 99 63-174 146-248 (314)
156 PLN02306 hydroxypyruvate reduc 98.0 3.7E-05 8E-10 75.5 9.5 105 63-174 164-287 (386)
157 PRK00045 hemA glutamyl-tRNA re 97.9 1.1E-05 2.4E-10 80.3 5.5 68 64-134 182-252 (423)
158 PF01118 Semialdhyde_dh: Semia 97.9 2.6E-05 5.7E-10 63.9 6.9 90 66-164 1-100 (121)
159 TIGR01763 MalateDH_bact malate 97.9 3.9E-05 8.5E-10 73.1 8.9 94 65-166 2-123 (305)
160 TIGR02992 ectoine_eutC ectoine 97.9 2.3E-05 5E-10 75.3 7.1 86 65-160 130-223 (326)
161 PRK06487 glycerate dehydrogena 97.9 3.5E-05 7.6E-10 73.8 8.3 99 62-174 146-248 (317)
162 PRK08618 ornithine cyclodeamin 97.9 2.5E-05 5.5E-10 75.0 7.2 86 65-160 128-220 (325)
163 PF00670 AdoHcyase_NAD: S-aden 97.9 3.7E-05 8.1E-10 66.1 7.2 85 64-160 23-109 (162)
164 COG0673 MviM Predicted dehydro 97.9 4E-05 8.7E-10 73.4 8.1 78 63-141 2-84 (342)
165 PRK13303 L-aspartate dehydroge 97.9 5.1E-05 1.1E-09 70.8 8.4 76 65-144 2-81 (265)
166 TIGR01035 hemA glutamyl-tRNA r 97.9 1.9E-05 4.2E-10 78.4 5.9 68 64-134 180-250 (417)
167 TIGR00036 dapB dihydrodipicoli 97.9 8.7E-05 1.9E-09 69.3 9.7 98 65-172 2-110 (266)
168 COG1748 LYS9 Saccharopine dehy 97.8 5E-05 1.1E-09 74.1 8.1 77 64-143 1-87 (389)
169 PTZ00117 malate dehydrogenase; 97.8 5.4E-05 1.2E-09 72.6 7.9 94 64-165 5-126 (319)
170 PTZ00075 Adenosylhomocysteinas 97.8 7.4E-05 1.6E-09 74.6 8.9 88 64-163 254-343 (476)
171 PRK06407 ornithine cyclodeamin 97.8 5E-05 1.1E-09 72.2 6.9 87 65-160 118-211 (301)
172 cd05292 LDH_2 A subgroup of L- 97.8 9.7E-05 2.1E-09 70.4 8.9 67 65-133 1-76 (308)
173 PRK08291 ectoine utilization p 97.8 5.9E-05 1.3E-09 72.6 7.4 69 65-135 133-208 (330)
174 PRK06046 alanine dehydrogenase 97.8 5.1E-05 1.1E-09 72.9 6.8 86 65-160 130-222 (326)
175 PTZ00082 L-lactate dehydrogena 97.8 0.00013 2.7E-09 70.1 9.2 93 65-165 7-132 (321)
176 PRK06823 ornithine cyclodeamin 97.8 6.3E-05 1.4E-09 71.9 7.1 87 65-160 129-221 (315)
177 PRK14188 bifunctional 5,10-met 97.7 0.0001 2.3E-09 69.6 8.3 69 64-160 158-229 (296)
178 COG0569 TrkA K+ transport syst 97.7 0.00023 5E-09 64.8 10.3 76 65-144 1-86 (225)
179 cd05297 GH4_alpha_glucosidase_ 97.7 9.6E-05 2.1E-09 73.6 8.1 69 65-134 1-84 (423)
180 TIGR01921 DAP-DH diaminopimela 97.7 0.00011 2.5E-09 70.1 8.1 66 64-135 3-71 (324)
181 PRK07589 ornithine cyclodeamin 97.7 5.3E-05 1.2E-09 73.3 5.8 89 65-160 130-224 (346)
182 PRK00436 argC N-acetyl-gamma-g 97.7 0.00011 2.4E-09 71.1 8.0 102 63-174 1-115 (343)
183 PRK08300 acetaldehyde dehydrog 97.7 0.00015 3.3E-09 68.5 8.8 88 64-160 4-100 (302)
184 COG2423 Predicted ornithine cy 97.7 0.00011 2.5E-09 70.3 7.7 87 65-160 131-224 (330)
185 PRK05476 S-adenosyl-L-homocyst 97.7 0.0002 4.4E-09 71.0 9.6 86 64-160 212-298 (425)
186 PRK00066 ldh L-lactate dehydro 97.7 0.00011 2.5E-09 70.2 7.6 66 65-132 7-81 (315)
187 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00016 3.4E-09 68.1 8.3 77 65-144 2-84 (285)
188 cd00650 LDH_MDH_like NAD-depen 97.7 0.00014 3.1E-09 67.6 7.8 95 67-165 1-123 (263)
189 PF02423 OCD_Mu_crystall: Orni 97.6 4.2E-05 9.1E-10 73.1 4.1 89 65-160 129-223 (313)
190 PRK00961 H(2)-dependent methyl 97.6 0.0016 3.6E-08 60.1 13.9 164 112-290 128-299 (342)
191 PLN02494 adenosylhomocysteinas 97.6 0.00019 4.2E-09 71.6 8.5 97 64-172 254-355 (477)
192 TIGR00936 ahcY adenosylhomocys 97.6 0.00032 6.9E-09 69.2 9.8 98 64-172 195-296 (406)
193 cd00401 AdoHcyase S-adenosyl-L 97.6 0.0003 6.5E-09 69.6 9.5 87 64-161 202-289 (413)
194 cd01339 LDH-like_MDH L-lactate 97.6 0.00014 2.9E-09 69.1 6.9 91 67-165 1-119 (300)
195 PRK12549 shikimate 5-dehydroge 97.6 9.6E-05 2.1E-09 69.7 5.7 67 65-134 128-202 (284)
196 TIGR01723 hmd_TIGR 5,10-methen 97.6 0.0023 4.9E-08 59.3 14.3 164 112-290 126-297 (340)
197 PRK02318 mannitol-1-phosphate 97.6 0.00012 2.6E-09 71.9 6.3 102 65-172 1-134 (381)
198 TIGR00518 alaDH alanine dehydr 97.6 0.0002 4.4E-09 70.0 7.6 86 65-161 168-267 (370)
199 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00012 2.7E-09 64.7 5.5 90 64-162 28-130 (194)
200 cd05293 LDH_1 A subgroup of L- 97.5 0.0002 4.2E-09 68.5 7.1 94 65-165 4-124 (312)
201 PLN02602 lactate dehydrogenase 97.5 0.00037 8.1E-09 67.6 9.0 96 65-166 38-159 (350)
202 cd05311 NAD_bind_2_malic_enz N 97.5 0.00069 1.5E-08 61.8 10.0 93 65-165 26-132 (226)
203 PRK04207 glyceraldehyde-3-phos 97.5 0.0004 8.6E-09 67.2 8.7 78 64-144 1-98 (341)
204 PRK09496 trkA potassium transp 97.5 0.00034 7.4E-09 69.8 8.5 73 65-141 1-82 (453)
205 PRK15076 alpha-galactosidase; 97.5 0.00056 1.2E-08 68.2 9.8 69 65-133 2-84 (431)
206 KOG2305|consensus 97.5 0.00037 8.1E-09 62.7 7.3 149 65-230 4-179 (313)
207 PRK00258 aroE shikimate 5-dehy 97.5 0.00019 4.2E-09 67.3 5.8 70 63-135 122-196 (278)
208 cd05290 LDH_3 A subgroup of L- 97.5 0.00031 6.7E-09 67.0 7.2 65 66-132 1-76 (307)
209 TIGR01809 Shik-DH-AROM shikima 97.5 0.00017 3.6E-09 68.0 5.3 68 64-134 125-200 (282)
210 PRK06199 ornithine cyclodeamin 97.4 0.00021 4.5E-09 70.1 5.8 68 65-134 156-233 (379)
211 PF02629 CoA_binding: CoA bind 97.4 0.00094 2E-08 52.4 8.5 76 64-144 3-82 (96)
212 TIGR01850 argC N-acetyl-gamma- 97.4 0.00051 1.1E-08 66.6 8.4 101 65-174 1-115 (346)
213 PLN02819 lysine-ketoglutarate 97.4 0.00093 2E-08 72.8 11.1 81 64-144 569-668 (1042)
214 PRK11579 putative oxidoreducta 97.4 0.001 2.2E-08 64.4 10.0 74 64-143 4-83 (346)
215 cd05294 LDH-like_MDH_nadp A la 97.4 0.0012 2.7E-08 63.0 10.0 96 65-166 1-126 (309)
216 cd00300 LDH_like L-lactate deh 97.4 0.00044 9.5E-09 65.7 6.8 93 67-165 1-119 (300)
217 TIGR00507 aroE shikimate 5-deh 97.3 0.00027 5.9E-09 66.0 5.2 90 64-161 117-214 (270)
218 COG0039 Mdh Malate/lactate deh 97.3 0.00085 1.8E-08 63.8 8.5 96 65-166 1-123 (313)
219 cd01338 MDH_choloroplast_like 97.3 0.00081 1.8E-08 64.5 8.5 100 64-166 2-133 (322)
220 PRK05442 malate dehydrogenase; 97.3 0.0012 2.6E-08 63.5 9.2 100 64-166 4-135 (326)
221 PF03435 Saccharop_dh: Sacchar 97.3 0.00049 1.1E-08 67.5 6.6 75 67-143 1-86 (386)
222 PRK06718 precorrin-2 dehydroge 97.3 0.002 4.2E-08 57.8 9.8 77 64-144 10-90 (202)
223 PRK04148 hypothetical protein; 97.3 0.001 2.2E-08 55.6 7.3 89 65-162 18-112 (134)
224 TIGR02354 thiF_fam2 thiamine b 97.3 0.0018 3.8E-08 58.0 9.4 35 63-100 20-54 (200)
225 TIGR01761 thiaz-red thiazoliny 97.3 0.0018 3.9E-08 62.7 10.1 67 64-133 3-71 (343)
226 PRK09310 aroDE bifunctional 3- 97.3 0.00038 8.3E-09 70.3 5.6 68 64-136 332-402 (477)
227 PRK05472 redox-sensing transcr 97.3 0.00062 1.3E-08 61.4 6.3 77 64-144 84-166 (213)
228 TIGR01759 MalateDH-SF1 malate 97.3 0.0012 2.5E-08 63.4 8.6 100 64-166 3-134 (323)
229 PRK14179 bifunctional 5,10-met 97.2 0.00082 1.8E-08 63.1 7.0 70 64-160 158-229 (284)
230 cd01080 NAD_bind_m-THF_DH_Cycl 97.2 0.00097 2.1E-08 58.0 7.0 74 64-163 44-118 (168)
231 cd00704 MDH Malate dehydrogena 97.2 0.0014 3E-08 62.9 8.8 99 65-166 1-131 (323)
232 COG2910 Putative NADH-flavin r 97.2 0.00079 1.7E-08 58.8 6.1 65 65-133 1-71 (211)
233 PF02254 TrkA_N: TrkA-N domain 97.2 0.0022 4.9E-08 51.5 8.4 66 67-137 1-75 (116)
234 PTZ00325 malate dehydrogenase; 97.2 0.0018 3.9E-08 62.1 9.0 98 63-166 7-130 (321)
235 PRK05086 malate dehydrogenase; 97.2 0.0021 4.6E-08 61.4 9.5 95 65-165 1-122 (312)
236 PLN02968 Probable N-acetyl-gam 97.2 0.0029 6.3E-08 62.1 10.6 93 62-164 36-137 (381)
237 cd01337 MDH_glyoxysomal_mitoch 97.2 0.0017 3.6E-08 62.0 8.5 94 65-166 1-122 (310)
238 PF13380 CoA_binding_2: CoA bi 97.1 0.0035 7.6E-08 51.0 9.1 94 65-174 1-99 (116)
239 TIGR01758 MDH_euk_cyt malate d 97.1 0.0018 3.9E-08 62.2 8.4 98 66-166 1-130 (324)
240 cd05191 NAD_bind_amino_acid_DH 97.1 0.002 4.4E-08 49.4 7.1 62 64-160 23-85 (86)
241 PF13460 NAD_binding_10: NADH( 97.1 0.0033 7.1E-08 54.4 9.3 71 67-144 1-85 (183)
242 PRK12475 thiamine/molybdopteri 97.1 0.0035 7.5E-08 60.6 9.8 36 63-101 23-58 (338)
243 PLN00112 malate dehydrogenase 97.0 0.0016 3.5E-08 64.8 7.5 100 64-166 100-231 (444)
244 TIGR01757 Malate-DH_plant mala 97.0 0.0017 3.8E-08 63.6 7.5 99 65-166 45-175 (387)
245 cd01336 MDH_cytoplasmic_cytoso 97.0 0.003 6.6E-08 60.7 9.1 99 64-165 2-132 (325)
246 PRK09496 trkA potassium transp 97.0 0.0028 6E-08 63.3 9.2 90 64-160 231-330 (453)
247 PLN00106 malate dehydrogenase 97.0 0.0031 6.8E-08 60.5 8.9 95 65-165 19-139 (323)
248 PRK10206 putative oxidoreducta 97.0 0.004 8.7E-08 60.3 9.4 77 65-144 2-84 (344)
249 COG2344 AT-rich DNA-binding pr 97.0 0.003 6.6E-08 55.3 7.4 78 64-144 84-166 (211)
250 PRK06719 precorrin-2 dehydroge 96.9 0.0049 1.1E-07 53.0 8.6 74 64-144 13-90 (157)
251 PRK11863 N-acetyl-gamma-glutam 96.9 0.0029 6.3E-08 60.4 7.7 82 63-163 1-83 (313)
252 PRK03659 glutathione-regulated 96.9 0.0032 7E-08 65.5 8.8 86 64-158 400-495 (601)
253 PRK14982 acyl-ACP reductase; P 96.9 0.0017 3.7E-08 62.6 6.2 88 64-161 155-246 (340)
254 PRK10669 putative cation:proto 96.9 0.0039 8.4E-08 64.3 9.0 69 63-136 416-493 (558)
255 TIGR00561 pntA NAD(P) transhyd 96.9 0.0042 9E-08 63.0 8.9 87 64-162 164-285 (511)
256 COG0169 AroE Shikimate 5-dehyd 96.9 0.0014 3.1E-08 61.6 5.2 69 64-135 126-201 (283)
257 PRK06270 homoserine dehydrogen 96.9 0.0031 6.8E-08 61.0 7.7 71 63-135 1-100 (341)
258 PRK05671 aspartate-semialdehyd 96.9 0.0056 1.2E-07 59.1 9.2 92 64-164 4-100 (336)
259 TIGR01772 MDH_euk_gproteo mala 96.9 0.0045 9.8E-08 59.1 8.5 95 66-166 1-121 (312)
260 COG0002 ArgC Acetylglutamate s 96.9 0.0036 7.8E-08 59.9 7.6 103 63-174 1-117 (349)
261 PRK14874 aspartate-semialdehyd 96.8 0.0058 1.3E-07 59.0 9.2 92 65-163 2-96 (334)
262 TIGR02356 adenyl_thiF thiazole 96.8 0.0052 1.1E-07 54.9 7.9 35 63-100 20-54 (202)
263 PRK08664 aspartate-semialdehyd 96.8 0.008 1.7E-07 58.3 9.7 91 63-162 2-108 (349)
264 PF00899 ThiF: ThiF family; I 96.7 0.019 4.1E-07 47.7 10.2 40 65-107 3-42 (135)
265 COG0289 DapB Dihydrodipicolina 96.7 0.015 3.1E-07 53.8 9.8 100 63-171 1-110 (266)
266 PLN02383 aspartate semialdehyd 96.6 0.0096 2.1E-07 57.7 9.0 93 63-163 6-102 (344)
267 cd05197 GH4_glycoside_hydrolas 96.6 0.019 4.1E-07 57.3 11.3 69 65-133 1-83 (425)
268 cd01483 E1_enzyme_family Super 96.6 0.017 3.6E-07 48.4 9.4 33 66-101 1-33 (143)
269 KOG2741|consensus 96.6 0.011 2.4E-07 56.5 9.0 105 63-173 5-116 (351)
270 PRK06349 homoserine dehydrogen 96.6 0.0083 1.8E-07 59.8 8.6 70 64-134 3-82 (426)
271 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.0055 1.2E-07 53.5 6.4 33 66-101 1-33 (174)
272 TIGR01771 L-LDH-NAD L-lactate 96.6 0.0034 7.4E-08 59.6 5.4 91 69-165 1-117 (299)
273 COG1064 AdhP Zn-dependent alco 96.6 0.01 2.2E-07 57.1 8.5 75 65-144 168-249 (339)
274 TIGR02717 AcCoA-syn-alpha acet 96.6 0.015 3.2E-07 58.4 10.0 74 63-144 6-84 (447)
275 PRK03562 glutathione-regulated 96.5 0.0085 1.8E-07 62.6 8.5 79 64-148 400-488 (621)
276 PRK14027 quinate/shikimate deh 96.5 0.0039 8.4E-08 58.8 5.5 44 64-110 127-170 (283)
277 cd05298 GH4_GlvA_pagL_like Gly 96.5 0.022 4.7E-07 57.0 11.0 69 65-133 1-83 (437)
278 KOG2666|consensus 96.5 0.29 6.4E-06 46.5 17.2 104 65-174 2-142 (481)
279 PRK08040 putative semialdehyde 96.5 0.011 2.5E-07 57.0 8.2 93 63-163 3-99 (336)
280 PRK09424 pntA NAD(P) transhydr 96.5 0.012 2.5E-07 59.9 8.6 86 64-161 165-285 (509)
281 TIGR01470 cysG_Nterm siroheme 96.4 0.024 5.2E-07 50.9 9.7 72 64-139 9-84 (205)
282 cd05296 GH4_P_beta_glucosidase 96.4 0.019 4E-07 57.2 9.6 68 65-132 1-83 (419)
283 TIGR01546 GAPDH-II_archae glyc 96.4 0.0072 1.6E-07 58.1 6.4 65 67-134 1-85 (333)
284 PRK12550 shikimate 5-dehydroge 96.4 0.0068 1.5E-07 56.8 6.1 66 64-134 122-188 (272)
285 COG4074 Mth H2-forming N5,N10- 96.4 0.14 3.1E-06 46.1 14.0 168 112-290 126-297 (343)
286 cd01492 Aos1_SUMO Ubiquitin ac 96.4 0.033 7.1E-07 49.7 10.2 36 63-101 20-55 (197)
287 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0057 1.2E-07 52.9 5.2 92 64-162 20-140 (168)
288 PRK08644 thiamine biosynthesis 96.4 0.017 3.7E-07 52.1 8.3 34 64-100 28-61 (212)
289 PRK07688 thiamine/molybdopteri 96.3 0.023 4.9E-07 55.0 9.3 35 63-100 23-57 (339)
290 cd05211 NAD_bind_Glu_Leu_Phe_V 96.3 0.0073 1.6E-07 54.7 5.6 101 63-174 22-140 (217)
291 TIGR01296 asd_B aspartate-semi 96.3 0.015 3.2E-07 56.3 8.0 89 66-162 1-93 (339)
292 PRK12749 quinate/shikimate deh 96.3 0.0079 1.7E-07 56.8 5.9 43 65-110 125-170 (288)
293 PRK14175 bifunctional 5,10-met 96.3 0.013 2.8E-07 55.2 7.2 71 64-160 158-229 (286)
294 PRK00676 hemA glutamyl-tRNA re 96.2 0.0093 2E-07 57.5 6.1 61 64-132 174-234 (338)
295 cd01486 Apg7 Apg7 is an E1-lik 96.2 0.025 5.4E-07 53.6 8.8 31 66-99 1-31 (307)
296 PRK00683 murD UDP-N-acetylmura 96.2 0.0092 2E-07 59.2 6.2 64 65-133 4-68 (418)
297 PF13241 NAD_binding_7: Putati 96.2 0.0098 2.1E-07 47.2 5.1 74 64-144 7-80 (103)
298 PF10100 DUF2338: Uncharacteri 96.2 0.15 3.3E-06 49.8 14.1 158 65-234 2-200 (429)
299 PRK06598 aspartate-semialdehyd 96.2 0.031 6.7E-07 54.6 9.5 91 65-162 2-99 (369)
300 PRK08374 homoserine dehydrogen 96.2 0.044 9.5E-07 53.0 10.5 103 63-173 1-137 (336)
301 cd00757 ThiF_MoeB_HesA_family 96.2 0.02 4.4E-07 52.0 7.9 36 63-101 20-55 (228)
302 PRK12548 shikimate 5-dehydroge 96.1 0.0095 2.1E-07 56.3 5.6 43 64-109 126-171 (289)
303 PRK06728 aspartate-semialdehyd 96.1 0.024 5.2E-07 54.9 8.3 92 64-163 5-101 (347)
304 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.0097 2.1E-07 54.3 5.3 100 63-174 30-149 (227)
305 cd01485 E1-1_like Ubiquitin ac 96.1 0.043 9.4E-07 48.9 9.3 36 63-101 18-53 (198)
306 PRK00141 murD UDP-N-acetylmura 96.0 0.016 3.5E-07 58.5 6.8 68 64-135 15-87 (473)
307 KOG0068|consensus 95.9 0.02 4.4E-07 54.6 6.6 101 64-174 146-251 (406)
308 TIGR00978 asd_EA aspartate-sem 95.9 0.039 8.4E-07 53.4 8.8 89 65-162 1-105 (341)
309 COG0686 Ald Alanine dehydrogen 95.9 0.014 3E-07 55.1 5.4 126 65-198 169-306 (371)
310 PRK05690 molybdopterin biosynt 95.8 0.032 7E-07 51.4 7.6 35 63-100 31-65 (245)
311 TIGR02355 moeB molybdopterin s 95.8 0.039 8.5E-07 50.7 8.1 42 64-108 24-65 (240)
312 cd01484 E1-2_like Ubiquitin ac 95.7 0.18 3.9E-06 46.2 12.0 32 66-100 1-32 (234)
313 PRK08328 hypothetical protein; 95.7 0.054 1.2E-06 49.5 8.4 44 63-109 26-69 (231)
314 COG1648 CysG Siroheme synthase 95.7 0.1 2.3E-06 47.0 10.1 77 64-144 12-92 (210)
315 PRK08762 molybdopterin biosynt 95.6 0.029 6.3E-07 55.0 6.9 35 63-100 134-168 (376)
316 TIGR01851 argC_other N-acetyl- 95.6 0.048 1E-06 51.9 7.9 78 65-162 2-81 (310)
317 PRK03369 murD UDP-N-acetylmura 95.6 0.034 7.4E-07 56.4 7.3 66 62-132 10-78 (488)
318 PF05368 NmrA: NmrA-like famil 95.6 0.036 7.8E-07 50.0 6.8 62 67-133 1-73 (233)
319 CHL00194 ycf39 Ycf39; Provisio 95.6 0.034 7.4E-07 52.8 6.9 64 65-133 1-73 (317)
320 PRK14192 bifunctional 5,10-met 95.5 0.04 8.7E-07 51.9 7.2 91 44-160 137-230 (283)
321 PF03447 NAD_binding_3: Homose 95.5 0.012 2.6E-07 47.5 3.2 85 71-162 1-91 (117)
322 PF02056 Glyco_hydro_4: Family 95.5 0.015 3.3E-07 51.1 3.8 71 66-136 1-85 (183)
323 COG0136 Asd Aspartate-semialde 95.4 0.066 1.4E-06 51.3 8.1 140 64-230 1-152 (334)
324 PRK01438 murD UDP-N-acetylmura 95.4 0.034 7.3E-07 56.1 6.5 64 64-132 16-86 (480)
325 PRK05678 succinyl-CoA syntheta 95.4 0.18 4E-06 47.7 11.0 92 64-167 8-103 (291)
326 COG1063 Tdh Threonine dehydrog 95.3 0.064 1.4E-06 52.0 7.9 76 66-144 171-259 (350)
327 COG0300 DltE Short-chain dehyd 95.3 0.12 2.7E-06 48.1 9.3 84 63-161 5-92 (265)
328 PRK05600 thiamine biosynthesis 95.2 0.095 2.1E-06 51.3 8.8 35 63-100 40-74 (370)
329 PRK14106 murD UDP-N-acetylmura 95.2 0.048 1E-06 54.4 6.9 65 64-133 5-77 (450)
330 TIGR01019 sucCoAalpha succinyl 95.1 0.26 5.6E-06 46.6 11.0 91 64-167 6-101 (286)
331 PRK14189 bifunctional 5,10-met 95.0 0.062 1.4E-06 50.6 6.6 71 64-160 158-229 (285)
332 PRK06153 hypothetical protein; 95.0 0.076 1.6E-06 52.0 7.4 34 64-100 176-209 (393)
333 PLN02520 bifunctional 3-dehydr 94.9 0.042 9.1E-07 56.4 5.6 44 64-111 379-422 (529)
334 PRK10792 bifunctional 5,10-met 94.9 0.099 2.2E-06 49.2 7.6 70 64-160 159-230 (285)
335 PRK07411 hypothetical protein; 94.9 0.11 2.4E-06 51.2 8.3 34 64-100 38-71 (390)
336 PRK01390 murD UDP-N-acetylmura 94.8 0.061 1.3E-06 54.0 6.5 62 65-131 10-72 (460)
337 PRK01710 murD UDP-N-acetylmura 94.8 0.068 1.5E-06 53.7 6.9 64 64-132 14-85 (458)
338 cd01489 Uba2_SUMO Ubiquitin ac 94.7 0.25 5.4E-06 47.2 10.0 32 66-100 1-32 (312)
339 TIGR01381 E1_like_apg7 E1-like 94.7 0.1 2.2E-06 54.3 7.7 33 64-99 338-370 (664)
340 PRK05597 molybdopterin biosynt 94.7 0.099 2.1E-06 50.9 7.4 36 63-101 27-62 (355)
341 TIGR01745 asd_gamma aspartate- 94.6 0.15 3.1E-06 49.8 8.2 91 65-162 1-98 (366)
342 PRK05562 precorrin-2 dehydroge 94.5 0.41 8.9E-06 43.5 10.4 77 64-144 25-105 (223)
343 PRK07878 molybdopterin biosynt 94.5 0.13 2.9E-06 50.7 7.8 35 63-100 41-75 (392)
344 PLN02775 Probable dihydrodipic 94.5 0.65 1.4E-05 43.7 11.9 102 62-174 9-124 (286)
345 PRK06392 homoserine dehydrogen 94.4 0.09 2E-06 50.6 6.3 22 65-86 1-22 (326)
346 PF03949 Malic_M: Malic enzyme 94.4 0.14 2.9E-06 47.5 7.1 106 65-174 26-159 (255)
347 TIGR03649 ergot_EASG ergot alk 94.4 0.24 5.2E-06 46.0 8.9 64 66-134 1-77 (285)
348 PRK08251 short chain dehydroge 94.4 0.27 5.8E-06 44.4 9.0 85 63-161 1-89 (248)
349 KOG0022|consensus 94.3 0.28 6.1E-06 46.6 9.0 76 65-144 194-283 (375)
350 PRK08223 hypothetical protein; 94.3 0.29 6.3E-06 46.2 9.2 35 64-101 27-61 (287)
351 PRK05854 short chain dehydroge 94.3 0.34 7.3E-06 46.0 9.8 83 65-161 15-101 (313)
352 cd01491 Ube1_repeat1 Ubiquitin 94.3 0.47 1E-05 44.8 10.6 35 64-101 19-53 (286)
353 PRK07024 short chain dehydroge 94.2 0.29 6.2E-06 44.7 9.0 83 63-162 1-87 (257)
354 PRK05653 fabG 3-ketoacyl-(acyl 94.2 0.24 5.1E-06 44.3 8.3 83 65-163 6-92 (246)
355 PRK00421 murC UDP-N-acetylmura 94.2 0.098 2.1E-06 52.6 6.2 63 65-132 8-74 (461)
356 PRK08955 glyceraldehyde-3-phos 94.1 0.24 5.3E-06 47.8 8.5 25 63-87 1-25 (334)
357 TIGR03855 NAD_NadX aspartate d 94.1 0.15 3.3E-06 46.6 6.7 52 93-144 4-57 (229)
358 PRK09880 L-idonate 5-dehydroge 94.0 0.27 5.8E-06 47.2 8.7 76 65-144 171-256 (343)
359 PLN02253 xanthoxin dehydrogena 94.0 0.48 1E-05 43.7 10.2 81 65-162 19-103 (280)
360 PRK10538 malonic semialdehyde 93.9 0.33 7.1E-06 44.1 8.7 79 65-162 1-83 (248)
361 PRK07326 short chain dehydroge 93.9 0.43 9.3E-06 42.7 9.4 82 64-162 6-91 (237)
362 PRK15116 sulfur acceptor prote 93.9 0.32 6.9E-06 45.5 8.6 35 63-100 29-63 (268)
363 cd00762 NAD_bind_malic_enz NAD 93.8 0.77 1.7E-05 42.5 10.8 96 65-165 26-145 (254)
364 cd01488 Uba3_RUB Ubiquitin act 93.8 0.28 6E-06 46.5 8.1 32 66-100 1-32 (291)
365 PRK11908 NAD-dependent epimera 93.8 0.17 3.7E-06 48.5 6.9 63 65-130 2-74 (347)
366 PRK12384 sorbitol-6-phosphate 93.8 0.39 8.5E-06 43.7 9.0 86 63-162 1-90 (259)
367 PF02882 THF_DHG_CYH_C: Tetrah 93.7 0.26 5.6E-06 42.5 7.1 71 64-160 36-107 (160)
368 PRK08017 oxidoreductase; Provi 93.7 0.11 2.3E-06 47.2 4.9 42 63-108 1-43 (256)
369 TIGR01087 murD UDP-N-acetylmur 93.6 0.13 2.8E-06 51.2 5.9 63 66-132 1-70 (433)
370 cd05312 NAD_bind_1_malic_enz N 93.6 0.43 9.3E-06 44.8 8.9 104 65-173 26-157 (279)
371 COG0460 ThrA Homoserine dehydr 93.6 0.38 8.1E-06 46.3 8.6 94 63-161 2-113 (333)
372 TIGR03366 HpnZ_proposed putati 93.6 0.48 1E-05 44.1 9.3 76 65-144 122-208 (280)
373 KOG1370|consensus 93.6 1.6 3.4E-05 41.5 12.3 66 66-136 215-281 (434)
374 PRK09186 flagellin modificatio 93.5 0.49 1.1E-05 42.8 9.1 84 64-161 4-91 (256)
375 PF10728 DUF2520: Domain of un 93.5 1.2 2.6E-05 37.0 10.6 100 215-326 11-115 (132)
376 PRK07074 short chain dehydroge 93.5 0.55 1.2E-05 42.6 9.4 43 63-109 1-44 (257)
377 COG1486 CelF Alpha-galactosida 93.5 0.16 3.5E-06 50.4 6.1 73 64-136 3-89 (442)
378 PLN03075 nicotianamine synthas 93.5 0.22 4.8E-06 47.2 6.8 91 64-159 124-231 (296)
379 PRK14176 bifunctional 5,10-met 93.5 0.27 5.8E-06 46.4 7.3 70 64-160 164-235 (287)
380 PRK02472 murD UDP-N-acetylmura 93.4 0.19 4.2E-06 50.1 6.7 64 64-132 5-76 (447)
381 KOG1495|consensus 93.4 0.53 1.2E-05 43.8 8.8 105 64-171 20-147 (332)
382 PRK14191 bifunctional 5,10-met 93.3 0.22 4.7E-06 47.0 6.5 71 64-160 157-228 (285)
383 TIGR02130 dapB_plant dihydrodi 93.3 1 2.2E-05 42.2 10.9 98 66-174 2-113 (275)
384 PRK09242 tropinone reductase; 93.3 0.55 1.2E-05 42.7 9.1 84 65-162 10-97 (257)
385 PLN02214 cinnamoyl-CoA reducta 93.3 0.25 5.5E-06 47.5 7.2 72 57-132 3-89 (342)
386 PRK08340 glucose-1-dehydrogena 93.3 0.56 1.2E-05 42.8 9.1 81 65-162 1-85 (259)
387 PRK06180 short chain dehydroge 93.2 0.63 1.4E-05 43.0 9.5 42 64-109 4-46 (277)
388 PF03720 UDPG_MGDP_dh_C: UDP-g 93.2 0.17 3.8E-06 40.2 4.9 80 76-162 19-102 (106)
389 KOG1502|consensus 93.2 0.27 5.9E-06 47.1 7.0 65 63-131 5-85 (327)
390 PRK07831 short chain dehydroge 93.1 0.58 1.3E-05 42.7 9.0 86 63-162 16-106 (262)
391 PRK02006 murD UDP-N-acetylmura 93.1 0.21 4.5E-06 50.8 6.5 66 65-134 8-81 (498)
392 PRK12829 short chain dehydroge 93.1 0.6 1.3E-05 42.4 9.0 83 64-164 11-97 (264)
393 PRK08643 acetoin reductase; Va 93.0 0.44 9.5E-06 43.3 8.0 84 63-162 1-88 (256)
394 TIGR01082 murC UDP-N-acetylmur 93.0 0.19 4E-06 50.4 5.9 62 66-132 1-66 (448)
395 PRK05866 short chain dehydroge 93.0 0.62 1.4E-05 43.7 9.2 82 65-162 41-126 (293)
396 PRK07062 short chain dehydroge 93.0 0.62 1.4E-05 42.5 9.0 84 65-162 9-96 (265)
397 COG4408 Uncharacterized protei 92.9 1.8 4E-05 41.4 11.9 162 65-233 5-200 (431)
398 PRK06482 short chain dehydroge 92.9 0.64 1.4E-05 42.8 9.0 43 63-109 1-44 (276)
399 cd08230 glucose_DH Glucose deh 92.9 0.51 1.1E-05 45.4 8.6 76 64-144 173-259 (355)
400 PLN03209 translocon at the inn 92.9 0.19 4E-06 51.9 5.7 40 64-107 80-120 (576)
401 PRK08267 short chain dehydroge 92.8 0.71 1.5E-05 42.0 9.1 41 65-109 2-43 (260)
402 KOG1200|consensus 92.7 0.34 7.4E-06 43.1 6.4 90 63-167 13-103 (256)
403 PF00070 Pyr_redox: Pyridine n 92.7 0.22 4.7E-06 37.2 4.5 34 66-103 1-34 (80)
404 PRK05993 short chain dehydroge 92.7 0.19 4.1E-06 46.6 5.1 43 63-109 3-46 (277)
405 PRK08163 salicylate hydroxylas 92.6 0.16 3.5E-06 49.5 4.8 36 63-102 3-38 (396)
406 PLN02657 3,8-divinyl protochlo 92.6 0.34 7.4E-06 47.7 7.1 38 62-103 58-96 (390)
407 TIGR03466 HpnA hopanoid-associ 92.6 0.28 6E-06 46.1 6.2 63 65-132 1-72 (328)
408 PRK07231 fabG 3-ketoacyl-(acyl 92.6 0.64 1.4E-05 41.8 8.4 81 65-162 6-90 (251)
409 PRK07454 short chain dehydroge 92.6 0.57 1.2E-05 42.1 8.0 82 65-162 7-92 (241)
410 PRK12826 3-ketoacyl-(acyl-carr 92.6 0.95 2.1E-05 40.6 9.5 40 63-106 5-45 (251)
411 PTZ00187 succinyl-CoA syntheta 92.5 1.6 3.4E-05 41.9 11.1 94 64-167 29-126 (317)
412 PRK05565 fabG 3-ketoacyl-(acyl 92.5 0.9 1.9E-05 40.6 9.2 84 63-162 4-92 (247)
413 PRK08339 short chain dehydroge 92.5 0.93 2E-05 41.7 9.4 84 63-162 6-94 (263)
414 PF03059 NAS: Nicotianamine sy 92.5 0.26 5.5E-06 46.3 5.6 90 64-158 121-227 (276)
415 PRK12409 D-amino acid dehydrog 92.4 0.18 3.9E-06 49.5 4.8 33 65-101 2-34 (410)
416 PRK07523 gluconate 5-dehydroge 92.4 1.2 2.5E-05 40.5 9.9 83 64-162 10-96 (255)
417 PLN02477 glutamate dehydrogena 92.4 0.49 1.1E-05 47.0 7.7 100 64-174 206-324 (410)
418 PTZ00317 NADP-dependent malic 92.3 11 0.00023 38.9 17.4 161 9-174 224-434 (559)
419 PRK07364 2-octaprenyl-6-methox 92.3 0.27 5.9E-06 48.2 6.0 44 55-102 9-52 (415)
420 PRK12769 putative oxidoreducta 92.3 0.35 7.5E-06 50.9 7.1 35 63-101 326-360 (654)
421 COG0026 PurK Phosphoribosylami 92.3 0.35 7.7E-06 46.9 6.4 72 65-141 2-82 (375)
422 TIGR03325 BphB_TodD cis-2,3-di 92.2 0.48 1E-05 43.3 7.1 41 65-109 6-47 (262)
423 COG0771 MurD UDP-N-acetylmuram 92.2 0.26 5.6E-06 49.4 5.6 67 64-135 7-82 (448)
424 PRK05875 short chain dehydroge 92.2 0.86 1.9E-05 41.9 8.8 85 64-162 7-95 (276)
425 PRK07890 short chain dehydroge 92.2 0.77 1.7E-05 41.6 8.4 83 64-162 5-91 (258)
426 PRK12809 putative oxidoreducta 92.2 0.37 8E-06 50.6 7.0 35 63-101 309-343 (639)
427 PRK08945 putative oxoacyl-(acy 92.1 0.69 1.5E-05 41.8 8.0 42 63-108 11-53 (247)
428 PRK06194 hypothetical protein; 92.1 1.2 2.7E-05 41.1 9.8 82 65-162 7-92 (287)
429 PRK06914 short chain dehydroge 92.1 0.73 1.6E-05 42.5 8.3 40 65-108 4-44 (280)
430 cd05212 NAD_bind_m-THF_DH_Cycl 92.0 0.66 1.4E-05 39.1 7.1 71 64-160 28-99 (140)
431 PLN02427 UDP-apiose/xylose syn 92.0 0.43 9.3E-06 46.5 7.0 66 64-132 14-94 (386)
432 COG4221 Short-chain alcohol de 92.0 0.95 2.1E-05 41.6 8.5 80 66-161 7-89 (246)
433 PRK06019 phosphoribosylaminoim 91.9 0.44 9.6E-06 46.5 6.9 62 65-130 3-69 (372)
434 PRK05650 short chain dehydroge 91.9 1.2 2.7E-05 40.7 9.6 82 65-162 1-86 (270)
435 PRK06138 short chain dehydroge 91.9 1.4 3.1E-05 39.6 9.8 81 65-162 6-90 (252)
436 COG1062 AdhC Zn-dependent alco 91.9 1.2 2.6E-05 42.9 9.3 76 65-144 187-275 (366)
437 PRK13394 3-hydroxybutyrate deh 91.9 0.93 2E-05 41.1 8.6 82 65-162 8-93 (262)
438 PRK12939 short chain dehydroge 91.9 0.74 1.6E-05 41.3 7.9 83 65-163 8-94 (250)
439 PRK12429 3-hydroxybutyrate deh 91.8 0.62 1.3E-05 42.1 7.4 82 65-162 5-90 (258)
440 PRK12861 malic enzyme; Reviewe 91.8 0.68 1.5E-05 49.4 8.5 91 65-165 190-292 (764)
441 PRK08306 dipicolinate synthase 91.8 1.3 2.9E-05 41.9 9.8 63 64-134 2-65 (296)
442 PRK03803 murD UDP-N-acetylmura 91.8 0.45 9.8E-06 47.6 6.9 64 65-132 7-76 (448)
443 PRK07825 short chain dehydroge 91.7 0.96 2.1E-05 41.5 8.6 79 65-161 6-86 (273)
444 KOG1209|consensus 91.6 0.3 6.4E-06 44.1 4.7 47 63-113 6-54 (289)
445 PRK07877 hypothetical protein; 91.6 0.58 1.3E-05 49.7 7.7 78 64-144 107-216 (722)
446 PRK08085 gluconate 5-dehydroge 91.6 1.1 2.5E-05 40.5 8.9 82 65-162 10-95 (254)
447 cd00755 YgdL_like Family of ac 91.5 0.32 7E-06 44.5 5.0 35 63-100 10-44 (231)
448 TIGR01318 gltD_gamma_fam gluta 91.5 0.6 1.3E-05 47.1 7.5 35 63-101 140-174 (467)
449 PRK08265 short chain dehydroge 91.4 1.2 2.6E-05 40.7 8.9 79 65-162 7-89 (261)
450 cd01079 NAD_bind_m-THF_DH NAD 91.4 0.62 1.4E-05 41.4 6.5 84 64-160 62-155 (197)
451 PRK07063 short chain dehydroge 91.4 1.1 2.4E-05 40.8 8.5 84 65-162 8-95 (260)
452 PRK07232 bifunctional malic en 91.4 0.53 1.1E-05 50.2 7.1 93 65-165 186-288 (752)
453 COG4091 Predicted homoserine d 91.3 2.3 4.9E-05 41.2 10.5 40 64-106 17-57 (438)
454 TIGR01532 E4PD_g-proteo D-eryt 91.3 0.72 1.6E-05 44.4 7.4 22 66-87 1-22 (325)
455 PRK06949 short chain dehydroge 91.3 1.9 4.1E-05 39.0 10.0 83 64-162 9-95 (258)
456 PRK06947 glucose-1-dehydrogena 91.3 0.99 2.1E-05 40.6 8.1 41 63-107 1-43 (248)
457 PRK05867 short chain dehydroge 91.2 0.88 1.9E-05 41.3 7.7 82 65-162 10-95 (253)
458 PRK07109 short chain dehydroge 91.2 1.5 3.2E-05 42.1 9.6 82 65-162 9-94 (334)
459 TIGR02822 adh_fam_2 zinc-bindi 91.1 1 2.2E-05 43.0 8.3 75 65-144 167-244 (329)
460 PRK06500 short chain dehydroge 91.1 1.7 3.6E-05 39.0 9.4 42 64-109 6-48 (249)
461 PLN00141 Tic62-NAD(P)-related 91.1 0.39 8.4E-06 43.8 5.2 66 64-133 17-94 (251)
462 PRK07097 gluconate 5-dehydroge 91.1 2.1 4.6E-05 39.1 10.2 87 60-162 5-96 (265)
463 PRK05876 short chain dehydroge 91.1 1.5 3.3E-05 40.6 9.3 82 65-162 7-92 (275)
464 PF00106 adh_short: short chai 91.1 1.3 2.8E-05 37.2 8.1 85 66-165 2-92 (167)
465 PRK05717 oxidoreductase; Valid 91.0 1.8 3.9E-05 39.2 9.6 39 65-107 11-50 (255)
466 PRK12828 short chain dehydroge 91.0 1.5 3.4E-05 38.8 9.0 83 64-162 7-91 (239)
467 KOG1399|consensus 91.0 0.27 5.8E-06 49.4 4.3 36 62-101 4-39 (448)
468 PRK07067 sorbitol dehydrogenas 91.0 1.6 3.5E-05 39.5 9.3 80 64-162 6-89 (257)
469 KOG3007|consensus 90.9 0.31 6.7E-06 45.3 4.3 93 66-167 140-242 (333)
470 KOG0023|consensus 90.9 5.2 0.00011 38.3 12.5 45 64-112 182-226 (360)
471 PRK07478 short chain dehydroge 90.9 1.9 4.1E-05 39.1 9.6 82 65-162 7-92 (254)
472 PRK06197 short chain dehydroge 90.8 1.3 2.7E-05 41.7 8.6 84 65-162 17-104 (306)
473 cd08237 ribitol-5-phosphate_DH 90.8 1.1 2.4E-05 42.9 8.3 74 65-144 165-246 (341)
474 PRK05872 short chain dehydroge 90.8 2.1 4.5E-05 40.1 10.0 81 65-162 10-94 (296)
475 PRK07677 short chain dehydroge 90.7 1.9 4.1E-05 39.1 9.4 82 65-162 2-87 (252)
476 PRK14573 bifunctional D-alanyl 90.7 0.52 1.1E-05 50.9 6.5 61 66-131 6-70 (809)
477 PRK10637 cysG siroheme synthas 90.7 1 2.2E-05 45.4 8.2 74 64-141 12-89 (457)
478 TIGR01202 bchC 2-desacetyl-2-h 90.7 1.6 3.5E-05 41.1 9.2 75 65-144 146-221 (308)
479 TIGR01777 yfcH conserved hypot 90.7 0.43 9.3E-06 44.0 5.1 60 68-132 2-65 (292)
480 TIGR01289 LPOR light-dependent 90.7 1.4 3.1E-05 41.7 8.8 85 62-161 1-89 (314)
481 PRK00711 D-amino acid dehydrog 90.6 0.35 7.6E-06 47.4 4.8 33 65-101 1-33 (416)
482 PRK08217 fabG 3-ketoacyl-(acyl 90.6 1.7 3.7E-05 38.9 9.0 82 65-162 6-91 (253)
483 PRK11728 hydroxyglutarate oxid 90.6 0.35 7.7E-06 47.3 4.7 35 63-101 1-37 (393)
484 PRK02705 murD UDP-N-acetylmura 90.6 0.46 1E-05 47.5 5.6 62 66-132 2-76 (459)
485 PRK04308 murD UDP-N-acetylmura 90.5 0.65 1.4E-05 46.4 6.7 65 64-132 5-75 (445)
486 PRK07774 short chain dehydroge 90.5 1.1 2.4E-05 40.3 7.7 40 64-107 6-46 (250)
487 PRK14178 bifunctional 5,10-met 90.5 0.73 1.6E-05 43.3 6.4 72 64-161 152-224 (279)
488 PRK07814 short chain dehydroge 90.5 1.2 2.7E-05 40.6 8.0 82 65-162 11-96 (263)
489 COG0281 SfcA Malic enzyme [Ene 90.4 1.9 4.1E-05 42.7 9.4 102 65-174 200-316 (432)
490 PLN03096 glyceraldehyde-3-phos 90.4 0.85 1.8E-05 45.0 7.1 35 63-98 59-93 (395)
491 COG1832 Predicted CoA-binding 90.4 2.7 5.8E-05 35.2 8.9 97 64-174 16-117 (140)
492 PRK14183 bifunctional 5,10-met 90.4 0.88 1.9E-05 42.8 6.9 70 64-160 157-228 (281)
493 PRK06753 hypothetical protein; 90.4 0.36 7.7E-06 46.7 4.5 34 65-102 1-34 (373)
494 PRK12862 malic enzyme; Reviewe 90.4 1.2 2.6E-05 47.8 8.7 101 65-173 194-307 (763)
495 PRK06182 short chain dehydroge 90.4 1.9 4E-05 39.6 9.1 40 65-108 4-44 (273)
496 PRK14851 hypothetical protein; 90.3 1.5 3.2E-05 46.4 9.3 35 64-101 43-77 (679)
497 PRK04690 murD UDP-N-acetylmura 90.3 0.63 1.4E-05 47.0 6.3 64 64-132 8-77 (468)
498 COG0702 Predicted nucleoside-d 90.3 0.81 1.8E-05 41.7 6.6 63 65-133 1-72 (275)
499 TIGR02360 pbenz_hydroxyl 4-hyd 90.2 0.38 8.3E-06 47.2 4.6 36 63-102 1-36 (390)
500 PRK14031 glutamate dehydrogena 90.2 0.76 1.6E-05 46.0 6.6 32 63-98 227-259 (444)
No 1
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-55 Score=404.10 Aligned_cols=256 Identities=36% Similarity=0.619 Sum_probs=243.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
++||||||+|+||++|+.+|+++|.+++.+|++++|++++++.+.++||+ ...++.+++.++|+|||||||+++.+++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~ 80 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLS 80 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHH
Confidence 36899999999999999999999977788999999999999878877988 67778889999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ ++ + .++++|||+++|++++.|+.+++ +.+ ++|+|||+|..++.|++.++.++..++ ++.+.+..
T Consensus 81 ~l-~~-~--~~~~lvISiaAGv~~~~l~~~l~-------~~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~--~~~~~v~~ 146 (266)
T COG0345 81 KL-KP-L--TKDKLVISIAAGVSIETLERLLG-------GLR-VVRVMPNTPALVGAGVTAISANANVSE--EDKAFVEA 146 (266)
T ss_pred Hh-hc-c--cCCCEEEEEeCCCCHHHHHHHcC-------CCc-eEEeCCChHHHHcCcceeeecCccCCH--HHHHHHHH
Confidence 99 88 6 68999999999999999999997 467 999999999999999999999988888 99999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
||+.+|.++|++|+++|++++++||+|+|+++++|+|.+++++.|+++++|++++.+++.|+++|+.+ ++.+
T Consensus 147 l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e--------~~~~ 218 (266)
T COG0345 147 LLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLE--------SGEH 218 (266)
T ss_pred HHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|.+|+++||||||+|++||..||+.+|+.++.+|+++++
T Consensus 219 p~~Lr~~VtSPGGtTiagl~~le~~g~~~~v~~av~aa~ 257 (266)
T COG0345 219 PAELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAAY 257 (266)
T ss_pred HHHHHHhCcCCCchHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
No 2
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.2e-54 Score=405.31 Aligned_cols=259 Identities=30% Similarity=0.576 Sum_probs=244.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|.+||+|||+|+||.+|+++|+++|+.++++|++++|++++++.+.+++|+ ...++.+++++||+||+||||+++.+++
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 678999999999999999999999965667899999999999888765788 7778888899999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ +++++|||+++|++++.|+++++ ...+ ++|+|||+|..+++|++.++++++.++ ++.+.++
T Consensus 81 ~~l-~~~~--~~~~lvISi~AGi~i~~l~~~l~------~~~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~--~~~~~v~ 148 (272)
T PRK12491 81 NQI-KDQI--KNDVIVVTIAAGKSIKSTENEFD------RKLK-VIRVMPNTPVLVGEGMSALCFNEMVTE--KDIKEVL 148 (272)
T ss_pred HHH-HHhh--cCCcEEEEeCCCCcHHHHHHhcC------CCCc-EEEECCChHHHHcCceEEEEeCCCCCH--HHHHHHH
Confidence 999 8888 78889999999999999999997 4568 999999999999999999999888887 8999999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
.||+.+|.+++++|+.+|.+++++||||+|++.++++|++++++.|++++++++++.+++.|+++++.+ ++.
T Consensus 149 ~lf~~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~--------~~~ 220 (272)
T PRK12491 149 NIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLE--------TGI 220 (272)
T ss_pred HHHHcCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 889
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
+|++|+++|+||||+|++||+.|+++||+..+.+|+++|+
T Consensus 221 ~p~~l~~~V~sPGGtT~~gl~~le~~~~~~~~~~av~aa~ 260 (272)
T PRK12491 221 HPGELKDMVCSPGGTTIEAVATLEEKGLRTAIISAMKRCT 260 (272)
T ss_pred CHHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
No 3
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=100.00 E-value=2.4e-48 Score=360.99 Aligned_cols=249 Identities=31% Similarity=0.521 Sum_probs=229.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||+|+||++|+++|.+++..++.+|++++|++++. +. ...++.++++++|+||+||||+++.+++.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 6899999999999999999999865666799999987542 33 455777888899999999999999999999
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ .+++ + +++|||+++|++.+.++++++ ...+ ++|+|||+|..+++|.+.+++.++.++ ++.+.++.+
T Consensus 77 i-~~~l--~-~~~iIS~~aGi~~~~l~~~~~------~~~~-vvr~mPn~p~~~g~g~t~i~~~~~~~~--~~~~~v~~l 143 (260)
T PTZ00431 77 I-KPYL--G-SKLLISICGGLNLKTLEEMVG------VEAK-IVRVMPNTPSLVGQGSLVFCANNNVDS--TDKKKVIDI 143 (260)
T ss_pred H-Hhhc--c-CCEEEEEeCCccHHHHHHHcC------CCCe-EEEECCCchhHhcceeEEEEeCCCCCH--HHHHHHHHH
Confidence 9 8887 5 468899999999999999887 4557 899999999999999999998877777 889999999
Q ss_pred HHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCh
Q psy316 224 MEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303 (341)
Q Consensus 224 l~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p 303 (341)
|+.+|.+++++|+.+|.+++++||+|+|++.++++|++++++.|+++++|++++.+++.|+++|+.+ ++.+|
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~--------~~~~~ 215 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKA--------SDQPV 215 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 304 ~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
.+|+++|+||||+|++||+.||++||+..+.+|+++|+
T Consensus 216 ~~l~~~v~spgG~T~~gl~~le~~g~~~~~~~a~~aa~ 253 (260)
T PTZ00431 216 QQLKDDVCSPGGITIVGLYTLEKHAFKYTVMDAVESAC 253 (260)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874
No 4
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.4e-48 Score=364.11 Aligned_cols=254 Identities=20% Similarity=0.330 Sum_probs=232.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCC-c-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMD-F-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g-~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+|+||++|+++|.++|.+++++|++|+|++ ++++.+..+++ + ...++.+++.++|+||+||||+++.+++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 6899999999999999999998854567899999864 44555554443 3 4567788889999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
.++ .+++ .++++|||+++|++.+.|+++++ ..+ ++|+|||+|..+++|++.+++++..++ ++.+.++
T Consensus 82 ~~l-~~~l--~~~~~ivS~~aGi~~~~l~~~~~-------~~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~--~~~~~v~ 148 (277)
T PRK06928 82 KDC-APVL--TPDRHVVSIAAGVSLDDLLEITP-------GLQ-VSRLIPSLTSAVGVGTSLVAHAETVNE--ANKSRLE 148 (277)
T ss_pred HHH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC-------CCC-EEEEeCccHHHHhhhcEEEecCCCCCH--HHHHHHH
Confidence 999 8888 77889999999999999999987 358 999999999999999999998888887 8999999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQ-GIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~-Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
.||+.+|.+++++|+++|.+++++||+|+|++.++++|++++++. |++++++++++.+++.|+++|+++ ++
T Consensus 149 ~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~--------~~ 220 (277)
T PRK06928 149 ETLSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVE--------ED 220 (277)
T ss_pred HHHHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc--------cC
Confidence 999999999999999999999999999999999999999999999 799999999999999999999988 88
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
.+|++|+++|+||||+|++||+.||+ +|++.+.+++++|
T Consensus 221 ~~p~~l~~~v~spgGtT~~gl~~le~-~~~~~~~~~~~~a 259 (277)
T PRK06928 221 YTFSGTIERVATKGGITAEGAEVIQA-QLPQFFDELLDRT 259 (277)
T ss_pred CCHHHHHHhCCCCChHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999996 9999999999987
No 5
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=8.7e-46 Score=347.22 Aligned_cols=257 Identities=29% Similarity=0.518 Sum_probs=237.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|.+++++|++|+|++ ++++.+.+++|+ ...++.++++++|+||+||||+++.+++.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~ 83 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEALI 83 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHH
Confidence 6899999999999999999999855667999999976 467777665688 77788888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ +++++|||+++|+++++++++++ .+.+ ++|.|||+|..++.|.+++++++..++ ++++.+++
T Consensus 84 ~l-~~~~--~~~~liIs~~aGi~~~~l~~~~~------~~~~-v~r~mPn~~~~~~~~~t~~~~~~~~~~--~~~~~v~~ 151 (279)
T PRK07679 84 PF-KEYI--HNNQLIISLLAGVSTHSIRNLLQ------KDVP-IIRAMPNTSAAILKSATAISPSKHATA--EHIQTAKA 151 (279)
T ss_pred HH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC------CCCe-EEEECCCHHHHHhcccEEEeeCCCCCH--HHHHHHHH
Confidence 99 8888 78899999999999999999887 4578 999999999999999999998877777 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+++++|+.++.+++++||||+|++.+++++.+++++.|++++++++++.+++.|++.++.+ ++.+
T Consensus 152 l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~--------~~~~ 223 (279)
T PRK07679 152 LFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKA--------SEKH 223 (279)
T ss_pred HHHhCCcEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 7889
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|..++++++||||+|++||+.|++++|+..+.+|+++|+
T Consensus 224 ~~~l~~~v~spgg~t~~gl~~l~~~~~~~~i~~a~~~a~ 262 (279)
T PRK07679 224 PSILRKEITSPGGTTEAGIEVLQEHRFQQALISCITQAT 262 (279)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
No 6
>PLN02688 pyrroline-5-carboxylate reductase
Probab=100.00 E-value=4.3e-45 Score=339.86 Aligned_cols=255 Identities=31% Similarity=0.574 Sum_probs=235.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|++++.+|++| +|++++.+.+.+ +|+ ...++.++++++|+||+||||+++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHH
Confidence 689999999999999999999986566789999 999999888876 688 77788888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ .++++|||+++|++.+.++++++ . .+ ++|+|||+|..++.+.+.++.+...++ +.++.+++
T Consensus 80 ~l-~~~~--~~~~~iIs~~~g~~~~~l~~~~~------~-~~-vvr~mP~~~~~~~~~~~~l~~~~~~~~--~~~~~v~~ 146 (266)
T PLN02688 80 EL-RPLL--SKDKLLVSVAAGITLADLQEWAG------G-RR-VVRVMPNTPCLVGEAASVMSLGPAATA--DDRDLVAT 146 (266)
T ss_pred HH-Hhhc--CCCCEEEEecCCCcHHHHHHHcC------C-CC-EEEECCCcHHHHhCceEEEEeCCCCCH--HHHHHHHH
Confidence 98 8887 78899999999999999998887 3 37 999999999999999999988876677 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+++++|+.+|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|++.++.+ ++.+
T Consensus 147 l~~~~G~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~--------~~~~ 218 (266)
T PLN02688 147 LFGAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLE--------TGKH 218 (266)
T ss_pred HHHhCCCEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999996667999999999999999999999999999999999999999999999999999999987 8899
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|.+++++|+||||+|++||+.|+++||++.+.+|+++++
T Consensus 219 ~~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a~~~~~ 257 (266)
T PLN02688 219 PGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNAVVAAA 257 (266)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998863
No 7
>KOG3124|consensus
Probab=100.00 E-value=1e-45 Score=331.09 Aligned_cols=255 Identities=38% Similarity=0.661 Sum_probs=237.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|++||||+|+|..++++++..+|...+++++.+..+...... ++. .|+ .+.++.+.++.+|++|++|||+.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~-~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA-LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc-CCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 589999999999999999999999888899998886555555 555 788 66666889999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ ..+++|+|+.+|++++.++.+++ ...+ ++|+|||+|..+++|.+++..+...+. ++.+.+++
T Consensus 80 ~~-~~~~--~~~~iivS~aaG~tl~~l~~~l~------~~~r-viRvmpNtp~~v~eg~sv~~~g~~~~~--~D~~l~~~ 147 (267)
T KOG3124|consen 80 EI-KPKV--SKGKIIVSVAAGKTLSSLESKLS------PPTR-VIRVMPNTPSVVGEGASVYAIGCHATN--EDLELVEE 147 (267)
T ss_pred cC-cccc--ccceEEEEEeecccHHHHHHhcC------CCCc-eEEecCCChhhhhcCcEEEeeCCCcch--hhHHHHHH
Confidence 99 7766 68899999999999999999998 5678 999999999999999998888888887 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+..++|+.+|++|+++||||+|.+.++|+|+|.+++.|+|++.++++..|++.|+++|+.+ ++.|
T Consensus 148 ll~~vG~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~--------s~qH 219 (267)
T KOG3124|consen 148 LLSAVGLCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLA--------SGQH 219 (267)
T ss_pred HHHhcCcceeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHh--------ccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
|.+|++.||||||+|+.||+.||+++||..+++|+++|
T Consensus 220 P~~Lkd~V~SPgG~TI~glh~LE~ggfRs~linaVeaa 257 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGTTIYGLHALEKGGFRSGLINAVEAA 257 (267)
T ss_pred cHHHhCCCCCCCcchHHHHHHHHhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999987
No 8
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=100.00 E-value=3.5e-45 Score=336.91 Aligned_cols=237 Identities=36% Similarity=0.618 Sum_probs=221.8
Q ss_pred hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 85 RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 85 ~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++|.+++++|++++|++++++.+.+++|+ ...++.++++++|+||+||||+++.+++.++ .+.+ .++++|||+++|
T Consensus 3 ~~~~~~~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l-~~~~--~~~~~ivS~~ag 79 (245)
T TIGR00112 3 KAGALAAYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSEL-KSEK--GKDKLLISIAAG 79 (245)
T ss_pred CCCCCCCCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHH-hhhc--cCCCEEEEecCC
Confidence 45556788999999999999988777888 7778888999999999999999999999999 8777 678899999999
Q ss_pred CCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHH
Q psy316 164 VDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243 (341)
Q Consensus 164 i~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~a 243 (341)
++++.|+++++ .+.+ ++|+|||+|..+++|++.+++++..++ ++.+.+++||+.+|.+++++|+.+|.+++
T Consensus 80 i~~~~l~~~~~------~~~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~--~~~~~v~~lf~~~G~~~~v~E~~~~~~ta 150 (245)
T TIGR00112 80 VTLEKLSQLLG------GTRR-VVRVMPNTPAKVGAGVTAIAANANVSE--EDRALVLALFKAVGEVVELPEALMDAVTA 150 (245)
T ss_pred CCHHHHHHHcC------CCCe-EEEECCChHHHHhCCeEEEecCCCCCH--HHHHHHHHHHHhCCCEEEECHHHcchHHh
Confidence 99999999998 4568 999999999999999999999888877 88999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHH
Q psy316 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHA 323 (341)
Q Consensus 244 l~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~ 323 (341)
++||||+|++.++++|.+++++.|+++++|++++.+++.|+++++++ ++.+|++|+++|+||||+|++||+.
T Consensus 151 lsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~--------~~~~~~~l~~~v~spgGtT~~gl~~ 222 (245)
T TIGR00112 151 LSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEE--------SGEHPALLKDQVTSPGGTTIAGLAV 222 (245)
T ss_pred hccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 8899999999999999999999999
Q ss_pred HHhCCchHHHHHHHHhhC
Q psy316 324 LEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 324 l~~~~~~~~~~~a~~~a~ 341 (341)
|+++||++.+.+|+++|+
T Consensus 223 Le~~~~~~~~~~a~~aa~ 240 (245)
T TIGR00112 223 LEEKGVRGAVIEAVEAAV 240 (245)
T ss_pred HHHCChHHHHHHHHHHHH
Confidence 999999999999998873
No 9
>PRK07680 late competence protein ComER; Validated
Probab=100.00 E-value=5.6e-44 Score=333.95 Aligned_cols=253 Identities=21% Similarity=0.401 Sum_probs=231.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|+|+|||+|+||++|+++|.++|++++++|++|+|++++++.+.+++ |+ ...++.+++.++|+||+||||+++.++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 47999999999999999999998555668999999999888877655 66 66788888899999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+++ +++++|||+++|++.+.++++++ .. ++|+|||++...+.|.+.++.++..++ +..+.+++
T Consensus 81 ~l-~~~l--~~~~~iis~~ag~~~~~L~~~~~--------~~-~~r~~p~~~~~~~~G~t~~~~g~~~~~--~~~~~~~~ 146 (273)
T PRK07680 81 KL-APHL--TDEHCLVSITSPISVEQLETLVP--------CQ-VARIIPSITNRALSGASLFTFGSRCSE--EDQQKLER 146 (273)
T ss_pred HH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC--------CC-EEEECCChHHHHhhccEEEeeCCCCCH--HHHHHHHH
Confidence 99 8888 78899999999999999999887 25 899999999888899988777766666 78899999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVK-QGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~-~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
+|+.+|..++++|+.++.+++++||+|+|++.++++|.+++++ .|++++++++++.+++.|+++++.+ ++.
T Consensus 147 ll~~~G~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~--------~~~ 218 (273)
T PRK07680 147 LFSNISTPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEK--------GLY 218 (273)
T ss_pred HHHcCCCEEEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh--------cCC
Confidence 9999999899999999999999999999999999999999987 8999999999999999999999988 889
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
+|++|+++|+||||+|++||+.||+ +|++.+.+|++++
T Consensus 219 ~~~~l~~~v~spgG~T~~gl~~le~-~~~~~~~~~~~~~ 256 (273)
T PRK07680 219 TLPTLQEKVCVKGGITGEGIKVLEE-EVGDMFHRLFQRT 256 (273)
T ss_pred CHHHHHHhCCCCChhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999 7999999999876
No 10
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.9e-43 Score=329.01 Aligned_cols=255 Identities=35% Similarity=0.610 Sum_probs=234.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|+|||+|||+|+||++++.+|.++|. .+++|++|+|++++++.+.+++|+ ...++.+++.++|+||+||||+++.+++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCC-CcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 67899999999999999999999883 446899999999998888775677 6677888889999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ +++|||+++|++.+.++++++ .+.+ ++|+|||+|..++.|.+.+++++..++ +..+.++
T Consensus 80 ~~l-~~~~----~~~vvs~~~gi~~~~l~~~~~------~~~~-iv~~~P~~p~~~~~~~~~i~~~~~~~~--~~~~~v~ 145 (267)
T PRK11880 80 SEL-KGQL----DKLVVSIAAGVTLARLERLLG------ADLP-VVRAMPNTPALVGAGMTALTANALVSA--EDRELVE 145 (267)
T ss_pred HHH-Hhhc----CCEEEEecCCCCHHHHHHhcC------CCCc-EEEecCCchHHHcCceEEEecCCCCCH--HHHHHHH
Confidence 999 7765 479999999999999998887 4568 999999999999999998888877777 8899999
Q ss_pred HHHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 222 KIMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 222 ~ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
.+|+.+|..+++ +|+.+|.+++++||+|+|++.+++++.+++.+.|++++++++++.+++.|+++++.+ ++
T Consensus 146 ~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~--------~~ 217 (267)
T PRK11880 146 NLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE--------SG 217 (267)
T ss_pred HHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cC
Confidence 999999998888 499999999999999999999999999999999999999999999999999999987 88
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
.+|++++++|+||||+|++||+.|+++|++..+.+|++++
T Consensus 218 ~~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~a~~~~ 257 (267)
T PRK11880 218 EHPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIEAVQAA 257 (267)
T ss_pred CCHHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 11
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.1e-41 Score=313.06 Aligned_cols=240 Identities=23% Similarity=0.413 Sum_probs=216.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.+||+|||+|+||.+++.+|.++|.....++++++| ++++++.+.+++++ .+.++.++++++|+||+|+||+.+.+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~ 83 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELL 83 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHH
Confidence 468999999999999999999887422334888887 57888888776777 6678888899999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ + +++|||+++|++++.|+++++ .+.+ ++|+|||++..++.|.+.++.....++ +..+.++
T Consensus 84 ~~l-~~~~--~-~~~vis~~~gi~~~~l~~~~~------~~~~-v~r~~Pn~a~~v~~g~~~~~~~~~~~~--~~~~~v~ 150 (245)
T PRK07634 84 AEL-SPLL--S-NQLVVTVAAGIGPSYLEERLP------KGTP-VAWIMPNTAAEIGKSISLYTMGQSVNE--THKETLQ 150 (245)
T ss_pred HHH-Hhhc--c-CCEEEEECCCCCHHHHHHHcC------CCCe-EEEECCcHHHHHhcCCeEEeeCCCCCH--HHHHHHH
Confidence 999 8877 4 679999999999999999998 4567 899999999999999988887776776 8899999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
.+|+.+|.+++++|+.++.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+++++++ +.
T Consensus 151 ~lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~---------~~ 221 (245)
T PRK07634 151 LILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ---------TQ 221 (245)
T ss_pred HHHHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 47
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHH
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
+|++|+++|+||||+|++||+.|+
T Consensus 222 ~~~~l~~~v~spgG~T~~gl~~l~ 245 (245)
T PRK07634 222 DPANLREQVTTPGGSTAEGLKALY 245 (245)
T ss_pred CHHHHHHhCCCCChHHHHHHHHhC
Confidence 999999999999999999999985
No 12
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.8e-41 Score=313.22 Aligned_cols=246 Identities=20% Similarity=0.339 Sum_probs=220.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||||||+|+||++|+++|.++|+ ....+.+|+|++++++.+.+++ ++ .+.++.++++++|+||+||||+++.++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHH
Confidence 489999999999999999999884 3456789999999988887755 45 66788888899999999999999999998
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ . + .++++|||+++|++.+.++++++ ...+ ++|+|||+|...+.|.+.++++ . +.+++
T Consensus 80 ~l-~--~--~~~~~vis~~ag~~~~~l~~~~~------~~~~-~~r~~P~~~~a~~~g~t~~~~~-------~--~~~~~ 138 (258)
T PRK06476 80 AL-R--F--RPGQTVISVIAATDRAALLEWIG------HDVK-LVRAIPLPFVAERKGVTAIYPP-------D--PFVAA 138 (258)
T ss_pred Hh-c--c--CCCCEEEEECCCCCHHHHHHHhC------CCCC-EEEECCCChhhhCCCCeEecCC-------H--HHHHH
Confidence 87 4 4 57889999999999999999987 4567 8999999999999998887653 1 47899
Q ss_pred HHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhhhhccccCC
Q psy316 223 IMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL-VHKDLLRMDHAAQ 300 (341)
Q Consensus 223 ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l-~~~~~~~~~~~~~ 300 (341)
+|+.+|..+++ +|+.+|.+++++ ++|+|++.+++++.+++++.|++++++++++.+++.|+++| +.+ ++
T Consensus 139 l~~~lG~~~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~--------~~ 209 (258)
T PRK06476 139 LFDALGTAVECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRS--------TK 209 (258)
T ss_pred HHHhcCCcEEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 99999998877 688999999986 68999999999999999999999999999999999999999 566 78
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
.+|++|+++|+||||+|++||+.||++||++.+.+|+++|+
T Consensus 210 ~~~~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~a~~aa~ 250 (258)
T PRK06476 210 TDFSALSREFSTKGGLNEQVLNDFSRQGGYAALTDALDRVL 250 (258)
T ss_pred CCHHHHHHhCCCCCchHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999874
No 13
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.98 E-value=2.4e-31 Score=252.36 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=187.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc-CChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~-r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.+||+|||+|+||.+++++|.++|+ +|++++ ++.++.+.+.+ .|+...++.+++++||+|+++|||+ +...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~-~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~ 77 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATE-DGFKVGTVEEAIPQADLIMNLLPDEVQHEVYE 77 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHH-CCCEECCHHHHHhcCCEEEEeCCcHhHHHHHH
Confidence 4789999999999999999999995 676654 44455665554 5773335788899999999999998 777777
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-h------cCceEEEE-eCCCCCcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-Y------GKGITGMC-HDVHLDKE 213 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-v------~~g~~~l~-~~~~~~~~ 213 (341)
+++ .+.+ +++ .+||+++|+++..++..++ .+.+ |+|+|||+|.. + |.|++.++ ...+.+.
T Consensus 78 ~ei-~~~l--~~g-~iVs~aaG~~i~~~~~~~~------~~~~-VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~- 145 (314)
T TIGR00465 78 AEI-QPLL--KEG-KTLGFSHGFNIHFVQIVPP------KDVD-VVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTG- 145 (314)
T ss_pred HHH-HhhC--CCC-cEEEEeCCccHhhccccCC------CCCc-EEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCH-
Confidence 788 8888 666 5899999999999988887 5678 99999999998 5 99998886 6666777
Q ss_pred HHHHHHHHHHHHhcCCe-------E---EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-------E---IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-------~---~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
++.+.+..+|+.+|.. . +++|+++|..++++||+|+|++.++++| ++.|++++.|+.++.+++.|
T Consensus 146 -~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 146 -EAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKL 220 (314)
T ss_pred -HHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHH
Confidence 8899999999999988 5 6688999999999999999999998887 68999999999999999999
Q ss_pred HHHHHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 284 SGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 284 s~~l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.|+.+ ++. ..|++.|+|+.
T Consensus 221 ~~~l~~e--------~g~--~~l~~~Vssta 241 (314)
T TIGR00465 221 IVDLIYE--------GGI--TGMRDRISNTA 241 (314)
T ss_pred HHHHHHH--------hcH--HHHHHHcCCHH
Confidence 9999988 665 69999999874
No 14
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.93 E-value=2.9e-25 Score=233.83 Aligned_cols=239 Identities=12% Similarity=0.154 Sum_probs=190.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
||.+||+|||+|+||.+++++|.++|+ .++|++|+|++++++.+.+ +|+ ...+..+++.++|+||+|||++.+.
T Consensus 1 ~~~~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~~aDvVilavp~~~~~ 77 (735)
T PRK14806 1 PLFGRVVVIGLGLIGGSFAKALRERGL--AREVVAVDRRAKSLELAVS-LGVIDRGEEDLAEAVSGADVIVLAVPVLAME 77 (735)
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEEECChhHHHHHHH-CCCCCcccCCHHHHhcCCCEEEECCCHHHHH
Confidence 356799999999999999999999884 3479999999988776655 565 2446677788999999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcCCchhhhc--------------Cce
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG--------------KGI 201 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~--------------~g~ 201 (341)
++++++ .+++ +++. +|+.+++++ .+.+++.++ . . .+|+|||+|.... .+.
T Consensus 78 ~vl~~l-~~~~--~~~~-ii~d~~svk~~~~~~l~~~~~------~--~-~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~ 144 (735)
T PRK14806 78 KVLADL-KPLL--SEHA-IVTDVGSTKGNVVDAARAVFG------E--L-PAGFVPGHPIAGSEKSGVHAANADLFRNHK 144 (735)
T ss_pred HHHHHH-HHhc--CCCc-EEEEcCCCchHHHHHHHHhcc------c--c-CCeEEecCCcCcCCcchhhhhhhHHhCCCe
Confidence 999999 8887 6664 555557777 566666665 2 3 5789999996522 223
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCA-YLFLVMDAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa-~~~~~~eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
+++++....++ +..+.++++|+.+|..+ +++++.||.++++++|+|+ |.+.+++++.+ .|.. ..+.++..+
T Consensus 145 ~~~~~~~~~~~--~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~----~~~~-~~~~~~a~~ 217 (735)
T PRK14806 145 VILTPLAETDP--AALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLAN----REDN-LDIFRYAAG 217 (735)
T ss_pred EEEECCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhh----cCCh-hHHHhhhcc
Confidence 46677665666 78899999999999865 5699999999999999999 67777777654 3332 357789999
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 280 LLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 280 ~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
+++++.+++. .+|+.|.+.+++|+|+|+++|+.|++ .+|+..+.
T Consensus 218 ~f~~~tRia~-----------~~p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~ 263 (735)
T PRK14806 218 GFRDFTRIAA-----------SDPVMWHDIFLANKEAVLRALDHFRDDLDALRAAIE 263 (735)
T ss_pred chhccccccc-----------CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988774 48999999999999999999999998 67777765
No 15
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.91 E-value=1.1e-23 Score=204.34 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=174.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-CCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-PMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++|+|||+|+||++|+++|.++|+ ++.+|+++++..+.... ..++ ...++.+++++||+||+|||++.+.++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 479999999999999999999985 77788776654333222 1343 235667788999999999999999999
Q ss_pred HHHhhhc-ccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCch-----------hhhcCceEEEE
Q psy316 141 IQGLVND-KVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTA-----------MKYGKGITGMC 205 (341)
Q Consensus 141 l~~i~~~-~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p-----------~~v~~g~~~l~ 205 (341)
+.++ .+ .+ +++ .+|+.+++++...+ ++.++ ...+ ++..+|... ..+....++++
T Consensus 77 l~~l-~~~~l--~~~-~ivtDv~SvK~~i~~~~~~~~~------~~~~-~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~ 145 (359)
T PRK06545 77 LAEL-ADLEL--KPG-VIVTDVGSVKGAILAEAEALLG------DLIR-FVGGHPMAGSHKSGVAAARADLFENAPWVLT 145 (359)
T ss_pred HHHH-hhcCC--CCC-cEEEeCccccHHHHHHHHHhcC------CCCe-EEeeCCcCcCchhhHHHhcHHHHCCCcEEEe
Confidence 9999 76 36 566 55556688876544 34433 3345 666655211 11233456778
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.+..++ +.++.++++|+.+|..+ +++++.||.++++++++|+|++. +| +...+.+.+.+..++.++|+++
T Consensus 146 ~~~~~~~--~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~ 217 (359)
T PRK06545 146 PDDHTDP--DAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDI 217 (359)
T ss_pred cCCCCCH--HHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCC
Confidence 7766666 88999999999999876 57999999999999999998885 34 3456777888899999999999
Q ss_pred HHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 285 GQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+++. .+|.+|++.+++|++.+.+.|..+.+
T Consensus 218 tRia~-----------~~p~~w~di~~~N~~~~~~~l~~~~~ 248 (359)
T PRK06545 218 TRIAS-----------SDPGMWRDILESNAEALLDALDEWIE 248 (359)
T ss_pred ccccC-----------CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88774 48999999999999999988888876
No 16
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.89 E-value=3.9e-22 Score=187.13 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=170.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|.||.+|+..|.++|+ +|++|+|++++++.+.+ .|. ...+..+.+.++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGVSRRESTCERAIE-RGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-CCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999984 89999999988887766 354 33334457889999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-----------hcCceEEEEeCCCCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-----------YGKGITGMCHDVHLD 211 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-----------v~~g~~~l~~~~~~~ 211 (341)
++ .+.+ +++.+| +.+++++.+.++.... ...+ +++.+|..... ......++++.+..+
T Consensus 76 ~l-~~~l--~~~~ii-~d~~Svk~~~~~~~~~------~~~~-~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~ 144 (279)
T PRK07417 76 QL-IPAL--PPEAIV-TDVGSVKAPIVEAWEK------LHPR-FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD 144 (279)
T ss_pred HH-HHhC--CCCcEE-EeCcchHHHHHHHHHH------hhCC-ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC
Confidence 99 8888 666554 5567888777766554 2235 77777632111 122244566666666
Q ss_pred ccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVK-QGIPR-DMALRIGAQLLKGSGQLV 288 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~-~Gl~~-~~a~~lv~~~~~gs~~l~ 288 (341)
+ +.++.++++++.+|..+ +++++.||..+++++++|+|++.. ++..... ..-+. +.+..+...+|+.+.++.
T Consensus 145 ~--~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~---l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia 219 (279)
T PRK07417 145 L--NALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA---LIQTCGTEKDPSVLKLAQNLASSGFADTSRVG 219 (279)
T ss_pred H--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH---HHHHHhhcccchhhHHhhhhccCccccccccc
Confidence 6 88899999999999875 579999999999999999987753 3332211 11111 223567788888777765
Q ss_pred HhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 289 HKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 289 ~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
. .+|+.|.+.+.++.....+.|..+++
T Consensus 220 ~-----------~~p~~w~~i~~~N~~~i~~~l~~~~~ 246 (279)
T PRK07417 220 G-----------GNPELGVMMAEYNRAALLRSLASYRQ 246 (279)
T ss_pred C-----------CChHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 48999999999998877777777766
No 17
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.89 E-value=1e-21 Score=183.77 Aligned_cols=230 Identities=15% Similarity=0.203 Sum_probs=173.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||++|+++|.++|+ ..+|++|+|++++.+.+.+ .|+ ...+..++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGYDHNELHLKKALE-LGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEEcCCHHHHHHHHH-CCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 489999999999999999999984 3479999999998887765 565 344666655 5999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCc------hhh----hcCc-eEEEEeCCCCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNT------AMK----YGKG-ITGMCHDVHLD 211 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~~----v~~g-~~~l~~~~~~~ 211 (341)
++ .+ + +++++|+++ +++ ...+.+.+... ...+ +++.||+. |.. ..+| ..++++.+..+
T Consensus 77 ~l-~~-l--~~~~iv~d~-gs~-k~~i~~~~~~~----~~~~-~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 77 KL-LD-I--KENTTIIDL-GST-KAKIIESVPKH----IRKN-FIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HH-hc-c--CCCCEEEEC-ccc-hHHHHHHHHHh----cCCC-EEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 99 88 8 788888874 433 44344433310 1246 88999974 221 1244 44566665555
Q ss_pred ccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 212 KESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
+ +.++.++++|+.+|.. ++++++.||..++++++.|++++. ++++... .+.+.+....+...+++.+.++..
T Consensus 146 ~--~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~- 218 (275)
T PRK08507 146 E--KHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK- 218 (275)
T ss_pred H--HHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc-
Confidence 5 7889999999999965 567999999999999998875444 5555443 466777778889989998877653
Q ss_pred hhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 291 DLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 291 ~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+|..|.+.+.++.....+.|+.|.+
T Consensus 219 ----------~~p~l~~~i~~~N~~~~~~~l~~~~~ 244 (275)
T PRK08507 219 ----------SSPAMWSDIFKQNKENVLEAIDEFIK 244 (275)
T ss_pred ----------CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 48999999999998888788777765
No 18
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.89 E-value=8.4e-22 Score=195.47 Aligned_cols=234 Identities=12% Similarity=0.189 Sum_probs=181.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+||| +|.||.++++.|.++|+ +|++|+|++++...++.++|+ ...+..+.+.++|+||+|+|++.+.+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIK 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHH
Confidence 5899997 89999999999999984 899999998887666555677 66677888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCC----chhhhcCceEEEEeCCCCCccHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPN----TAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn----~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
++ .+.+ +++++|+++++ +...+.+++.++ .+.+ +++.||. .+...++ ..++++++..++ +.
T Consensus 77 ~l-~~~l--~~~~iViDvsSvK~~~~~~l~~~~~------~~~~-~V~~HPmaGp~~~~~~g~-~~il~p~~~~~~--~~ 143 (437)
T PRK08655 77 EV-APHV--KEGSLLMDVTSVKERPVEAMEEYAP------EGVE-ILPTHPMFGPRTPSLKGQ-VVILTPTEKRSN--PW 143 (437)
T ss_pred HH-HhhC--CCCCEEEEcccccHHHHHHHHHhcC------CCCE-EEEcCCCCCCCCcccCCC-EEEEecCCCCCH--HH
Confidence 99 8888 88999998865 223456666666 4556 7888753 3332233 345666654555 78
Q ss_pred HHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy316 217 LNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRM 295 (341)
Q Consensus 217 ~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~ 295 (341)
.+.++++|+.+|..++ ++++.||.+++++++.|++++. +++.++.+.|++.++++.+...+++....++.+ .
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tR-I--- 216 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGR-I--- 216 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHH-H---
Confidence 8999999999998765 5888999999999999987766 456666778999999999999999886333222 1
Q ss_pred cccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 296 DHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 296 ~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+.+|..|.+...++. ...+.+..|.+
T Consensus 217 ---a~~~p~lw~dI~~~N~-~~~~~l~~~~~ 243 (437)
T PRK08655 217 ---LGQNPYLYASIQMNNP-QIPEIHETFIK 243 (437)
T ss_pred ---hcCCHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 2358999999988886 56677766655
No 19
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.89 E-value=1.8e-21 Score=181.00 Aligned_cols=227 Identities=18% Similarity=0.170 Sum_probs=162.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
+||+|||+|+||..||++|+++|+ ++++|||++++ .+.+.+ .|. ...++.+++..+|+||+||++ .++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~~r~~~ka~~~~~~-~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVYNRTPEKAAELLAA-AGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEEeCChhhhhHHHHH-cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999995 99999999999 444444 688 788889999999999999985 7899999
Q ss_pred HH---hhhcccccCCCcEEEEecCCCCHHHHH---HhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCcc
Q psy316 142 QG---LVNDKVTLNSSRCIISMLVGVDLETLK---KKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 142 ~~---i~~~~l~~~~~~iIVs~~agi~~~~l~---~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
.+ + ...+ ++++++|++ ++++++.-+ +.+.. .+.. ++.+ +...+.......++++.++ +
T Consensus 76 ~g~~g~-~~~~--~~G~i~IDm-STisp~~a~~~a~~~~~-----~G~~-~lDAPVsGg~~~A~~GtLtimvGG~---~- 141 (286)
T COG2084 76 FGENGL-LEGL--KPGAIVIDM-STISPETARELAAALAA-----KGLE-FLDAPVSGGVPGAAAGTLTIMVGGD---A- 141 (286)
T ss_pred hCccch-hhcC--CCCCEEEEC-CCCCHHHHHHHHHHHHh-----cCCc-EEecCccCCchhhhhCceEEEeCCC---H-
Confidence 53 5 5556 789999987 556665433 33321 2223 3221 1122222222356677665 4
Q ss_pred HHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+.+++++++|+.+|.. +++++......+.++. +.++...+.++.|+ +.++|++++...+++..+..++..+-.
T Consensus 142 -~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~n--n~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~ 218 (286)
T COG2084 142 -EAFERAKPVLEAMGKNIVHVGPVGAGQAAKLAN--NILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN 218 (286)
T ss_pred -HHHHHHHHHHHHhcCceEEECCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh
Confidence 8999999999999985 5677776666666543 45556666666665 569999999999999998777755433
Q ss_pred hhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHH
Q psy316 290 KDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 290 ~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
+ . ..+.+.-++|++.....+++|.
T Consensus 219 ~-----------~-~~m~~~~~~p~F~v~~~~KDl~ 242 (286)
T COG2084 219 Y-----------G-PRMLEGDFSPGFAVDLMLKDLG 242 (286)
T ss_pred h-----------c-chhhcCCCCcchhHHHHHHHHH
Confidence 2 2 3334444778777777777664
No 20
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=99.88 E-value=2.3e-22 Score=161.98 Aligned_cols=101 Identities=39% Similarity=0.694 Sum_probs=93.3
Q ss_pred cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCC
Q psy316 233 IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICS 312 (341)
Q Consensus 233 v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~t 312 (341)
|+|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|++.++.+ ++.+|.+|++.|+|
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~--------~~~~~~~l~~~v~t 72 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEE--------SGRSPAELRDEVTT 72 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH--------CSS-HHHHHHHHS-
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHc--------cCCCHHHHhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999998 88999999999999
Q ss_pred CchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 313 PGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 313 pgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|||+|++||+.|++++|++.+.+|+++++
T Consensus 73 PgG~T~~gl~~L~~~~~~~~~~~a~~aa~ 101 (107)
T PF14748_consen 73 PGGTTIAGLEVLEKGGLRAAIMEALEAAV 101 (107)
T ss_dssp TTSHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999873
No 21
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.88 E-value=3.9e-21 Score=182.64 Aligned_cols=242 Identities=11% Similarity=0.152 Sum_probs=172.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
+.+||+|||+|.||.++++.|.+.|+ .++|++|+|++++.+.+.+ .|+ ...+..+.+.++|+||+|+|+..+.+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~ 81 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGL--AGEIVGADRSAETRARARE-LGLGDRVTTSAAEAVKGADLVILCVPVGASGA 81 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEEECCHHHHHHHHh-CCCCceecCCHHHHhcCCCEEEECCCHHHHHH
Confidence 45799999999999999999999884 3489999999988877665 564 34566778899999999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh--------------cCceEEEE
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--------------GKGITGMC 205 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--------------~~g~~~l~ 205 (341)
++.++ .+.+ +++.+|++ .++++.+.++..... ... .+++++++|... .....+++
T Consensus 82 v~~~l-~~~l--~~~~iv~d-vgs~k~~~~~~~~~~------~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 82 VAAEI-APHL--KPGAIVTD-VGSVKASVIAAMAPH------LPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred HHHHH-HhhC--CCCCEEEe-CccchHHHHHHHHHh------CCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99998 8888 77776665 477776555443321 011 234555555431 11223455
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+....++ +.++.++++|+.+|..+ +++++.||.++|+++++|++++..+-..... ....+.+....+...+|+..
T Consensus 151 ~~~~~~~--~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~--~~~~~~~~~~~~~~~gfrd~ 226 (307)
T PRK07502 151 PPEGTDP--AAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADD--LERVTESEVIKYSASGFRDF 226 (307)
T ss_pred CCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhh--hcccchHHHHHhcccccccc
Confidence 5544455 78899999999999875 4599999999999999999988764322211 12233344556777777776
Q ss_pred HHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHH
Q psy316 285 GQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPF 333 (341)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~ 333 (341)
.++. ..+|+.|.+.+.++.....+.|+.|++ ..|+..+
T Consensus 227 tRia-----------~~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l 266 (307)
T PRK07502 227 TRIA-----------ASDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAI 266 (307)
T ss_pred cccc-----------cCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 248999999999998888788887776 2344444
No 22
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.86 E-value=5.7e-20 Score=174.73 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=153.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH-
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI- 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl- 141 (341)
..++|+|||+|+||.+++++|.++|+ +|++++|+..+......+.|+...+..++++.||+|+++||+....+++
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGV----DVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYE 91 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHH
Confidence 35789999999999999999999995 8888877654443333335773338889999999999999999889998
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-------hcCceEEEE-eCCCCCcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-------YGKGITGMC-HDVHLDKE 213 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-------v~~g~~~l~-~~~~~~~~ 213 (341)
+++ .+.+ +++++| ++++|+++..++...+ .+.+ ++++|||+|.. +|+|++.++ ...+.+.
T Consensus 92 ~~I-~~~L--k~g~iL-~~a~G~~i~~~~~~p~------~~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~- 159 (330)
T PRK05479 92 EEI-EPNL--KEGAAL-AFAHGFNIHFGQIVPP------ADVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASG- 159 (330)
T ss_pred HHH-HhcC--CCCCEE-EECCCCChhhceeccC------CCCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCH-
Confidence 778 8888 788877 7889999998877766 5678 99999999998 899999888 5555666
Q ss_pred HHHHHHHHHHHHhcCCeE------Ec-CCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVE------II-PES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~------~v-~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
++.+.+..++..+|... .+ .|. +++.-..++ .++..++.+-.+..++.|++++.|+.=..+=+.-
T Consensus 160 -~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~----gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~ 234 (330)
T PRK05479 160 -NAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLC----GGLTELIKAGFETLVEAGYQPEMAYFECLHELKL 234 (330)
T ss_pred -HHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHh----hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88999999999999642 23 232 344433333 2444555566666789999999876543333344
Q ss_pred HHHHH
Q psy316 284 SGQLV 288 (341)
Q Consensus 284 s~~l~ 288 (341)
...++
T Consensus 235 i~dl~ 239 (330)
T PRK05479 235 IVDLI 239 (330)
T ss_pred HHHHH
Confidence 44444
No 23
>PLN02256 arogenate dehydrogenase
Probab=99.83 E-value=3.5e-19 Score=168.76 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=171.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~v 140 (341)
..++|+|||+|+||.++++.|.+.|+ +|++++|++.. +.. .++|+ ...+..+++ .++|+||+|||++.+.++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~d~~~~~-~~a-~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~v 108 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH----TVLATSRSDYS-DIA-AELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAV 108 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEEECccHH-HHH-HHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHH
Confidence 45799999999999999999999884 89999998643 222 23577 566777766 479999999999999999
Q ss_pred HHHhhh-cccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc----eEEEEeC-----C
Q psy316 141 IQGLVN-DKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG----ITGMCHD-----V 208 (341)
Q Consensus 141 l~~i~~-~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g----~~~l~~~-----~ 208 (341)
+.++ . +.+ +++++|+++++ +...+.+++.++ .+.+ +++.||+.+.+.+.+ ...+... +
T Consensus 109 l~~l-~~~~l--~~~~iviDv~SvK~~~~~~~~~~l~------~~~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~ 178 (304)
T PLN02256 109 LRSL-PLQRL--KRSTLFVDVLSVKEFPKNLLLQVLP------EEFD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGDE 178 (304)
T ss_pred HHhh-hhhcc--CCCCEEEecCCchHHHHHHHHHhCC------CCCe-EEecCCCCCCCCCccccCCCeEEEecceecCC
Confidence 9887 4 456 78889999877 445677777776 4567 999999987765422 2222211 2
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
..++ +..+.++++|+.+|..+ +++.+.||.++|.+++.|+.++. +|.. ...+ ...+...+|+...++
T Consensus 179 ~~~~--~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~----~~~~---~~~~~~~gfrd~tri 246 (304)
T PLN02256 179 GERE--ARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGK----MELE---STPINTKGYETLLRL 246 (304)
T ss_pred CCCH--HHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHH----cCCc---ccccccccHHHHHHH
Confidence 2344 77889999999999865 56999999999999888875544 3332 2222 146777777877777
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
..+ + -..+|..|.+...++.... +.|+.|.+ ..|+..+.
T Consensus 247 a~r----~---~~~~p~lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~ 287 (304)
T PLN02256 247 VEN----T---SSDSFDLYYGLFMYNPNAT-EELERLELAFDSVKKQLF 287 (304)
T ss_pred HHh----h---cCCCHHHHHHHHHHChHHH-HHHHHHHHHHHHHHHHHH
Confidence 642 0 1248999999999987766 88888877 34444443
No 24
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.4e-18 Score=162.20 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=169.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc--CChhhhhhcCcCCCc--c-ccCh-HHHhhcCCEEEEeeChHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA--PSERFKLHWPEPMDF--A-LNDN-HRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~--r~~e~~~~l~~~~g~--~-~~s~-~e~~~~aDvIilaV~~~~ 136 (341)
+.++|+|+|+|.||.++++.|.++|+ .+.+++ ++.++.+...+ +|+ . ..+. .+.+..+|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEeccHHH
Confidence 56899999999999999999999995 555554 55444444333 565 2 2232 566778999999999999
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchh-----hhcCceEEEEeCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAM-----KYGKGITGMCHDV 208 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-----~v~~g~~~l~~~~ 208 (341)
+.++++++ .+.+ +++.+|+++ ++++. +.+++..+ ...+ ++..+|..-. .......++++.+
T Consensus 77 ~~~~l~~l-~~~l--~~g~iv~Dv-~S~K~~v~~a~~~~~~------~~~~-~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 77 TEEVLKEL-APHL--KKGAIVTDV-GSVKSSVVEAMEKYLP------GDVR-FVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred HHHHHHHh-cccC--CCCCEEEec-ccccHHHHHHHHHhcc------CCCe-eEecCCCCCCcccccccCCCEEEEcCCC
Confidence 99999999 9888 889888876 44553 45555555 2225 6666664322 1123356777776
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
..+. +..+.++++|+.+|..+ +++.+.||.+++...+.|++++. ++.....+.+.......++...+++...++
T Consensus 146 ~~~~--~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRi 220 (279)
T COG0287 146 GTEK--EWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRI 220 (279)
T ss_pred CCCH--HHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHH
Confidence 5555 78999999999999764 56999999999999988886665 555555565554455788999999988777
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
..+ +|..|.+...++.+...+.+..+.+
T Consensus 221 a~~-----------~P~m~~dI~~~N~~~~l~~i~~~~~ 248 (279)
T COG0287 221 ASS-----------DPEMYADIQLSNKEALLEAIERFAK 248 (279)
T ss_pred HcC-----------ChHHHHHHHHhCcHHHHHHHHHHHH
Confidence 644 8999999999998876666655544
No 25
>KOG0409|consensus
Probab=99.82 E-value=1.6e-18 Score=159.32 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=154.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDS 139 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~ 139 (341)
+-.++|||||+|+||.+|+.+|+++|+ .|++|||+..+.+.+.+ .|. +..++.|++++||+||.+|| |.++++
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~dr~~~k~~~f~~-~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVYDRTKDKCKEFQE-AGARVANSPAEVAEDSDVVITMVPNPKDVKD 107 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCC----EEEEEeCcHHHHHHHHH-hchhhhCCHHHHHhhcCEEEEEcCChHhhHH
Confidence 356789999999999999999999995 99999999999999988 588 88999999999999999998 578899
Q ss_pred HHHHhhhcccc-cCCCcEE-EEecCCCCHHH---HHHhccccCCCCCCCCeEEEE--cCCchhhhcCce-EEEEeCCCCC
Q psy316 140 AIQGLVNDKVT-LNSSRCI-ISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGI-TGMCHDVHLD 211 (341)
Q Consensus 140 vl~~i~~~~l~-~~~~~iI-Vs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~-~~l~~~~~~~ 211 (341)
++..- ...+. .++++.. |++ +.++++. |++.... .+.+ .+.+ ..+.. ...+|. +++..++
T Consensus 108 v~~g~-~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~-----~~~~-~vDAPVSGg~~-~A~~G~LtimagGd--- 175 (327)
T KOG0409|consen 108 VLLGK-SGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISN-----KGGR-FVDAPVSGGVK-GAEEGTLTIMAGGD--- 175 (327)
T ss_pred HhcCC-CcceeeccCCCceEEec-cccCHHHHHHHHHHHHh-----CCCe-EEeccccCCch-hhhcCeEEEEecCc---
Confidence 88653 33231 0455554 654 5666543 4443331 2333 3332 11111 123454 4555543
Q ss_pred ccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
+ +.++++.++|+.+|+. +++++........|. ....+...+-+++|+ +.+.|++.....+++..+-.++..
T Consensus 176 e--~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~- 250 (327)
T KOG0409|consen 176 E--ALFEAASPVFKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSM- 250 (327)
T ss_pred H--HHHHHHHHHHHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHH-
Confidence 4 8899999999999975 456654433333332 223333444444443 569999999999999986555544
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
++. .-|.. .+....|++.+....++|
T Consensus 251 ~~~----------~~p~m-~k~dy~p~f~~~~m~KDL 276 (327)
T KOG0409|consen 251 FYN----------PVPGM-LKGDYNPGFALKLMVKDL 276 (327)
T ss_pred HhC----------cCchh-hcCCCCCcchHHHHHHHH
Confidence 333 12333 344577777777766666
No 26
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.82 E-value=3e-18 Score=162.19 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=150.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
+||+|||+|+||.+|+++|.++|+ +|++|||++++.+.+.+ .|. ...++.++++++|+||+|||++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~d~~~~~~~~~~~-~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVFDVNPQAVDALVD-KGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-cCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 489999999999999999999984 99999999999998877 477 6778888999999999999986 5888875
Q ss_pred H---hhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceE-EEEeCCCCCccHH
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGIT-GMCHDVHLDKESE 215 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~-~l~~~~~~~~~~~ 215 (341)
. + .+.+ ++++++|+++++.+. ..+.+.+.. .+.. ++.+ +...+.....|.. +++.++ + +
T Consensus 77 ~~~~i-~~~l--~~g~lvid~sT~~p~~~~~l~~~l~~-----~g~~-~ldapV~g~~~~a~~g~l~~~~gg~---~--~ 142 (296)
T PRK15461 77 GENGV-CEGL--SRDALVIDMSTIHPLQTDKLIADMQA-----KGFS-MMDVPVGRTSDNAITGTLLLLAGGT---A--E 142 (296)
T ss_pred CcccH-hhcC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCc-EEEccCCCCHHHHHhCcEEEEECCC---H--H
Confidence 3 4 4456 688899988555432 344444431 2333 3321 1122333334544 455543 4 8
Q ss_pred HHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy316 216 HLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKD 291 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~ 291 (341)
.++.++++|+.+|.. +++++..-...+.++. +.+....+..+.|+ +.+.|++.+...+++..+..++..+...
T Consensus 143 ~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~- 219 (296)
T PRK15461 143 QVERATPILMAMGNELINAGGPGMGIRVKLIN--NYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT- 219 (296)
T ss_pred HHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc-
Confidence 899999999999975 4566543333344432 22333333344443 5699999999999998876666443322
Q ss_pred hhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 292 LLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 292 ~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
.+..+.+.-.+|+.++....+.+
T Consensus 220 ----------~~~~~~~~~~~~~f~~~~~~KD~ 242 (296)
T PRK15461 220 ----------WPNKVLKGDLSPAFMIDLAHKDL 242 (296)
T ss_pred ----------ccchhccCCCCCCcchHHHHhhH
Confidence 23333444456665555555544
No 27
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.80 E-value=5.1e-18 Score=160.25 Aligned_cols=196 Identities=14% Similarity=0.191 Sum_probs=136.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|+ +|++|+|++. .+.+.+ .|. ...++.++++.+|+||+|||+. ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~~~~~~-~~~~~~-~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVTTIGPV-ADELLS-LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEEeCCHh-HHHHHH-cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 479999999999999999999995 9999999874 566655 577 6778889999999999999964 7888874
Q ss_pred H---hhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCcc
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDKE 213 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~~ 213 (341)
+ + .+.+ .++++||++ ++++++.. .+.+.. .+.. ++.. | ..+.....|. ++++.++ +
T Consensus 75 ~~~g~-~~~~--~~g~ivvd~-sT~~p~~~~~~~~~~~~-----~G~~-~vda-PVsGg~~~a~~g~l~~~~gG~---~- 139 (292)
T PRK15059 75 GENGC-TKAS--LKGKTIVDM-SSISPIETKRFARQVNE-----LGGD-YLDA-PVSGGEIGAREGTLSIMVGGD---E- 139 (292)
T ss_pred CCcch-hccC--CCCCEEEEC-CCCCHHHHHHHHHHHHH-----cCCC-EEEe-cCCCCHHHHhcCcEEEEEcCC---H-
Confidence 3 4 4445 678999987 55666533 343331 2344 4442 3 2233334554 4555553 4
Q ss_pred HHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.++.++++|+.+|.. +++++......+.+.. +.+++..+.++.|+ +.+.|++.++..+++..+...+
T Consensus 140 -~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~--N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s 211 (292)
T PRK15059 140 -AVFERVKPLFELLGKNITLVGGNGDGQTCKVAN--QIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASS 211 (292)
T ss_pred -HHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccC
Confidence 8899999999999975 5677765555555443 34444445555554 4689999999999887655444
No 28
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.80 E-value=5.6e-18 Score=160.50 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=143.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc---CCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE---AEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~---aDvIilaV~~~-~v~~ 139 (341)
|||||||+|+||.+|+++|.++|+ +|++|||++++.+.+.+ .|. ...+++++++. +|+||+|+|++ ++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGYDVNQEAVDVAGK-LGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHH-CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 489999999999999999999985 89999999999888876 577 67788888776 69999999986 8999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCCccHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
++.++ .+.+ +++++||++++..+. ..+.+.+.. .+.. ++.+ +...+.....|.+++..|+ + +.
T Consensus 76 v~~~i-~~~l--~~g~ivid~st~~~~~~~~~~~~~~~-----~g~~-~vdapV~G~~~~a~~g~~~~~gG~---~--~~ 141 (299)
T PRK12490 76 VIKDL-YPLL--SPGDIVVDGGNSRYKDDLRRAEELAE-----RGIH-YVDCGTSGGVWGLRNGYCLMVGGD---K--EI 141 (299)
T ss_pred HHHHH-hccC--CCCCEEEECCCCCchhHHHHHHHHHH-----cCCe-EEeCCCCCCHHHHhcCCeEEecCC---H--HH
Confidence 99988 8888 789999988554332 333344431 2333 3331 2233444445665666664 4 78
Q ss_pred HHHHHHHHHhcCC----eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH-HHHHH
Q psy316 217 LNMAIKIMEQGGI----VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQG--IPRDMALRIGAQ-LLKGS 284 (341)
Q Consensus 217 ~~~v~~ll~~lG~----~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~G--l~~~~a~~lv~~-~~~gs 284 (341)
++.++++|+.+|. .+++++..-.....+. .+.+++..+.++.|+ +.+.| ++.+++.+++.. +..++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s 217 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRS 217 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHH
Confidence 9999999999995 4566654434444443 345566666667665 45788 999999999985 33443
No 29
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.78 E-value=5.6e-17 Score=153.79 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=140.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc---CCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE---AEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~---aDvIilaV~~~-~v~~ 139 (341)
|||||||+|+||++|+++|+++|+ +|++|||++++.+.+.+ .|+ ...++.++++. +|+||+++|+. ++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGYDRNPEAVEALAE-EGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHH-CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999985 89999999999988876 587 67788888775 69999999986 8899
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH--HHHHhccccCCCCCCCCeEEEEcC--CchhhhcCceEEEEeCCCCCccHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE--TLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGITGMCHDVHLDKESE 215 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~--~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~~~l~~~~~~~~~~~ 215 (341)
++.++ .+.+ ++++++|+++++.+.. .+.+.+.. .+.. ++. .| ..+.....|.+++..|+ + +
T Consensus 76 v~~~l-~~~l--~~g~ivid~st~~~~~~~~~~~~~~~-----~g~~-~~d-apvsG~~~~a~~g~~~~~gG~---~--~ 140 (301)
T PRK09599 76 TIDEL-APLL--SPGDIVIDGGNSYYKDDIRRAELLAE-----KGIH-FVD-VGTSGGVWGLERGYCLMIGGD---K--E 140 (301)
T ss_pred HHHHH-HhhC--CCCCEEEeCCCCChhHHHHHHHHHHH-----cCCE-EEe-CCCCcCHHHHhcCCeEEecCC---H--H
Confidence 99888 8888 7889999886654422 23333331 2334 443 23 23333445666666654 4 8
Q ss_pred HHHHHHHHHHhcCC----e-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHHH
Q psy316 216 HLNMAIKIMEQGGI----V-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK--QGIPRDMALRIGAQLL 281 (341)
Q Consensus 216 ~~~~v~~ll~~lG~----~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~--~Gl~~~~a~~lv~~~~ 281 (341)
.++.++++|+.+|. . +++++..-.....+ +.+++.+..+.++.|+ +.+ .|++.++..+++..+.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl--~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~ 214 (301)
T PRK09599 141 AVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKM--VHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGS 214 (301)
T ss_pred HHHHHHHHHHHHcccccCCeEeECCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 89999999999997 4 56666433333333 2345555555566664 346 9999999999988653
No 30
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.78 E-value=4.2e-17 Score=159.01 Aligned_cols=215 Identities=14% Similarity=0.144 Sum_probs=157.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
..++|+||| +|.||.++++.|.++|+ +|++|+|+.. .+..+++.+||+||+|||+....+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHHH
Confidence 457899998 99999999999999995 8999998631 14567788999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhhh--cCceEEEEeCCCCCccHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--GKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--~~g~~~l~~~~~~~~~~~~ 216 (341)
.++ .+ + +++++|+++ ++++.. .+.+.++ .+ ++..+|...... -.+..++. .+..++ +.
T Consensus 160 ~~l-~~-l--~~~~iv~Dv-~SvK~~~~~~~~~~~~--------~~-fvg~HPm~G~~~~~~~~~~vv~-~~~~~~--~~ 222 (374)
T PRK11199 160 ARL-PP-L--PEDCILVDL-TSVKNAPLQAMLAAHS--------GP-VLGLHPMFGPDVGSLAKQVVVV-CDGRQP--EA 222 (374)
T ss_pred HHH-hC-C--CCCcEEEEC-CCccHHHHHHHHHhCC--------CC-EEeeCCCCCCCCcccCCCEEEE-cCCCCc--hH
Confidence 998 88 7 789898887 555543 3333333 25 777777533222 12222222 223344 67
Q ss_pred HHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhh
Q psy316 217 LNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG----SGQLVHKD 291 (341)
Q Consensus 217 ~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g----s~~l~~~~ 291 (341)
++.+.++++.+|..+ +++++.||..++++++.|++++. +++....+.|++.+...++...++.. +.+++.
T Consensus 223 ~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~-- 297 (374)
T PRK11199 223 YQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA-- 297 (374)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc--
Confidence 889999999999865 56999999999999888776654 33333344788877777777777776 555543
Q ss_pred hhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 292 LLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 292 ~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+|..|.+...++.... +.|+.|.+
T Consensus 298 ---------~~p~lw~dI~~~N~~~~-~~l~~~~~ 322 (374)
T PRK11199 298 ---------QDPQLYADIIMSSPENL-ALIKRYYQ 322 (374)
T ss_pred ---------CCHHHHHHHHHhChhHH-HHHHHHHH
Confidence 48999999999987766 77776665
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.78 E-value=1.4e-18 Score=150.46 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=109.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
++||||||+|+||+.|+++|+++|+ +|++|||++++.+++.++ |+ .+.++.|+++.+|+||+|||+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~d~~~~~~~~~~~~-g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVYDRSPEKAEALAEA-GAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEEESSHHHHHHHHHT-TEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEeeccchhhhhhhHHh-hhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 4799999999999999999999995 999999999999999884 78 888999999999999999996 7899999
Q ss_pred HH--hhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccH
Q psy316 142 QG--LVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKES 214 (341)
Q Consensus 142 ~~--i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~ 214 (341)
.+ + .+.+ +++++||++ +.++++. +.+.+.. .+.. ++.+ +...|....+|. +++..|+ +
T Consensus 76 ~~~~i-~~~l--~~g~iiid~-sT~~p~~~~~~~~~~~~-----~g~~-~vdapV~Gg~~~a~~g~l~~~~gG~---~-- 140 (163)
T PF03446_consen 76 FGENI-LAGL--RPGKIIIDM-STISPETSRELAERLAA-----KGVR-YVDAPVSGGPPGAEEGTLTIMVGGD---E-- 140 (163)
T ss_dssp HCTTH-GGGS---TTEEEEE--SS--HHHHHHHHHHHHH-----TTEE-EEEEEEESHHHHHHHTTEEEEEES----H--
T ss_pred hhhHH-hhcc--ccceEEEec-CCcchhhhhhhhhhhhh-----ccce-eeeeeeecccccccccceEEEccCC---H--
Confidence 88 8 7778 899999987 4556543 3344431 2333 3332 223344444554 6677765 3
Q ss_pred HHHHHHHHHHHhcCCeEE
Q psy316 215 EHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~~ 232 (341)
+.++.++++|+.+|..++
T Consensus 141 ~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 141 EAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp HHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHhCCce
Confidence 889999999999998654
No 32
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.78 E-value=1.6e-17 Score=166.01 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=139.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc----cccChHHHhhc---CCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF----ALNDNHRIIKE---AEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~----~~~s~~e~~~~---aDvIilaV~~ 134 (341)
++|||||+|+||++|+++|+++|+ +|++|||++++.+.+.+. .|. .+.++.++++. +|+||+|||.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC----eEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 479999999999999999999995 999999999998887652 132 45678888875 9999999985
Q ss_pred -HHHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCC
Q psy316 135 -QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHL 210 (341)
Q Consensus 135 -~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~ 210 (341)
.++++|+.++ .+.+ .++++||++.+.... ..+.+.+.. .+.. ++.+ +...+.....|.++++.|+
T Consensus 83 ~~aV~~Vi~gl-~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~-----~Gi~-fldapVSGG~~gA~~G~~im~GG~-- 151 (493)
T PLN02350 83 GAPVDQTIKAL-SEYM--EPGDCIIDGGNEWYENTERRIKEAAE-----KGLL-YLGMGVSGGEEGARNGPSLMPGGS-- 151 (493)
T ss_pred cHHHHHHHHHH-Hhhc--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEeCCCcCCHHHhcCCCeEEecCC--
Confidence 6789999888 8888 899999998554322 233333331 2333 3322 1233334456666666664
Q ss_pred CccHHHHHHHHHHHHhcCC-------eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHH
Q psy316 211 DKESEHLNMAIKIMEQGGI-------VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---VK-QGIPRDMALRIGA 278 (341)
Q Consensus 211 ~~~~~~~~~v~~ll~~lG~-------~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~~-~Gl~~~~a~~lv~ 278 (341)
+ +.++.++++|+.+|. +.++++..-...+.+.. +...+..++++.|+. .+ .|++.++..+++.
T Consensus 152 -~--~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~--N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~ 225 (493)
T PLN02350 152 -F--EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVH--NGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA 225 (493)
T ss_pred -H--HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4 889999999999983 45677655555555554 456666777777763 35 5999999888854
No 33
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=1.8e-17 Score=157.62 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=142.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CC--------------c-cccChHHHhhc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MD--------------F-ALNDNHRIIKE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g--------------~-~~~s~~e~~~~ 124 (341)
.+||+|||+|+||.+|+..|.++|+ +|++|++++++++.+.+. .+ + .+.+..+++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL----QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence 3689999999999999999999984 899999999887765431 11 2 34566777899
Q ss_pred CCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceE
Q psy316 125 AEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGIT 202 (341)
Q Consensus 125 aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~ 202 (341)
||+||+|||++ ....++.++ .+.+ +++++|+|.++|++++.+++.++ ...+ ++++||+.|...+. ..
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l-~~~~--~~~~ii~s~tsg~~~~~l~~~~~------~~~~-~ig~h~~~p~~~~~-l~ 148 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARL-DGLC--DPDTIFATNTSGLPITAIAQAVT------RPER-FVGTHFFTPADVIP-LV 148 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHH-HHhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEccCCCCccCc-eE
Confidence 99999999986 367788888 8777 67778889999999999988876 4567 99999999987766 44
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQL 280 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~ 280 (341)
.+++++..++ +.++.+.++|+.+|...+ +..+.-..+ .. ..+...+.|++.. +.+.|+++++..+++..+
T Consensus 149 ~i~~g~~t~~--~~~~~v~~l~~~~G~~~v~~~~d~~G~i---~n--r~~~~~~~Ea~~l-~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 149 EVVRGDKTSP--QTVATTMALLRSIGKRPVLVKKDIPGFI---AN--RIQHALAREAISL-LEKGVASAEDIDEVVKWS 219 (311)
T ss_pred EEeCCCCCCH--HHHHHHHHHHHHcCCEEEEEcCCCCCcH---HH--HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHhc
Confidence 5567766667 899999999999998654 443311111 00 1122334444432 345678988887777543
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.78 E-value=1.5e-17 Score=167.81 Aligned_cols=197 Identities=12% Similarity=0.111 Sum_probs=145.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc------------------CCC-c-cccChHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE------------------PMD-F-ALNDNHRI 121 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~------------------~~g-~-~~~s~~e~ 121 (341)
.|.|||+|||+|+||.+||.+|+++|+ +|++||+++++++.+.+ ..| + .+.++.++
T Consensus 2 ~~i~kIavIG~G~MG~~iA~~la~~G~----~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea 77 (495)
T PRK07531 2 TMIMKAACIGGGVIGGGWAARFLLAGI----DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA 77 (495)
T ss_pred CCcCEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH
Confidence 356799999999999999999999995 99999999988765421 013 4 56677888
Q ss_pred hhcCCEEEEeeChHH-HH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKPQY-LD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~~~-v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||.|+|++. ++ .++.++ .+.+ +++.+|.|.++|++++.+.+.+. ...+ ++..+|+.|...+.
T Consensus 78 ~~~aD~Vieavpe~~~vk~~l~~~l-~~~~--~~~~iI~SsTsgi~~s~l~~~~~------~~~r-~~~~hP~nP~~~~~ 147 (495)
T PRK07531 78 VAGADWIQESVPERLDLKRRVLAEI-DAAA--RPDALIGSSTSGFLPSDLQEGMT------HPER-LFVAHPYNPVYLLP 147 (495)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Ccce-EEEEecCCCcccCc
Confidence 999999999999763 44 466777 7777 77788889999999999988776 3567 89999998886654
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
.+.+++++..++ +.++.+.++|+.+|+..++-++.++.+.+-. ...+.+.|++.- +.+.|++.++..+++..
T Consensus 148 -Lvevv~g~~t~~--e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nr----l~~a~~~EA~~L-~~~g~~s~~~id~~~~~ 219 (495)
T PRK07531 148 -LVELVGGGKTSP--ETIRRAKEILREIGMKPVHIAKEIDAFVGDR----LLEALWREALWL-VKDGIATTEEIDDVIRY 219 (495)
T ss_pred -eEEEcCCCCCCH--HHHHHHHHHHHHcCCEEEeecCCCcchhHHH----HHHHHHHHHHHH-HHcCCCCHHHHHHHHhh
Confidence 446777777777 8999999999999997665333333333210 111223444432 34677888888888775
Q ss_pred H
Q psy316 280 L 280 (341)
Q Consensus 280 ~ 280 (341)
+
T Consensus 220 g 220 (495)
T PRK07531 220 S 220 (495)
T ss_pred c
Confidence 5
No 35
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.77 E-value=7.8e-17 Score=152.63 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=138.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh---hcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII---KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~---~~aDvIilaV~~~~v~~v 140 (341)
|||||||+|+||.+|+++|.++|+ +|.+|||++++.+.+.+ .+. ...++.++. ..+|+||+|||+..++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGYDHDQDAVKAMKE-DRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-cCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999984 99999999999998887 466 555665544 468999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHH--HHhccccCCCCCCCCeEEEEcC-CchhhhcCceEEEEeCCCCCccHHHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETL--KKKLSVLVPNPNDAPTIIRVMP-NTAMKYGKGITGMCHDVHLDKESEHL 217 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l--~~~l~~~~~~~~~~~~vvr~mp-n~p~~v~~g~~~l~~~~~~~~~~~~~ 217 (341)
++++ .+.+ +++++||++.++...... .+.+.. .+.+ ++.+.. ..+.....|.+++..|+ + +.+
T Consensus 76 ~~~l-~~~l--~~g~ivid~st~~~~~t~~~~~~~~~-----~g~~-~vda~vsGg~~~a~~G~~~~~gG~---~--~~~ 141 (298)
T TIGR00872 76 LEEL-APTL--EKGDIVIDGGNSYYKDSLRRYKLLKE-----KGIH-LLDCGTSGGVWGRERGYCFMIGGD---G--EAF 141 (298)
T ss_pred HHHH-HhhC--CCCCEEEECCCCCcccHHHHHHHHHh-----cCCe-EEecCCCCCHHHHhcCCeeeeCCC---H--HHH
Confidence 9999 8888 889999998776543332 223321 2334 444321 22333345666566654 4 889
Q ss_pred HHHHHHHHhcCC----eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---HHc--CCCHHHHHHHHHHHH
Q psy316 218 NMAIKIMEQGGI----VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---VKQ--GIPRDMALRIGAQLL 281 (341)
Q Consensus 218 ~~v~~ll~~lG~----~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~~~--Gl~~~~a~~lv~~~~ 281 (341)
+.++++|+.++. .+++++..-.....+.. +++.+..+.+++|+. .+. |++.++..+++..+.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~--n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 142 ARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVH--NGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHHHHHHhcCcCCCEEEECCccHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 999999999985 35666543334444332 455555566666642 344 579999888887654
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.76 E-value=1.1e-16 Score=151.31 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=134.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
|.|||+|||+|.||..+++.|.+.|+ +|++|+|++++.+.+.+ .|+ ...+..++++++|+||+|+|+ .+++.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~d~~~~~~~~~~~-~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v 75 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGY----SLVVYDRNPEAVAEVIA-AGAETASTAKAVAEQCDVIITMLPNSPHVKEV 75 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 56799999999999999999999984 89999999999888776 477 667888889999999999995 567777
Q ss_pred H---HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCc
Q psy316 141 I---QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDK 212 (341)
Q Consensus 141 l---~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~ 212 (341)
+ .++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++.. +...+.......+++..++ +
T Consensus 76 ~~~~~~~-~~~~--~~g~iiid~st-~~~~~~~~l~~~~~~-----~g~~-~~d~pv~g~~~~a~~g~l~i~~gg~---~ 142 (296)
T PRK11559 76 ALGENGI-IEGA--KPGTVVIDMSS-IAPLASREIAAALKA-----KGIE-MLDAPVSGGEPKAIDGTLSVMVGGD---K 142 (296)
T ss_pred HcCcchH-hhcC--CCCcEEEECCC-CCHHHHHHHHHHHHH-----cCCc-EEEcCCCCCHHHHhhCcEEEEECCC---H
Confidence 6 346 6667 78899997754 4443 45555541 2233 3321 1112222222245555543 4
Q ss_pred cHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.++.++++|+.+|.. +++++..-...+.+.. +.+.+..+..+.|+ +.+.|++.++..+++..+..++
T Consensus 143 --~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s 214 (296)
T PRK11559 143 --AIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLAN--QVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGS 214 (296)
T ss_pred --HHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccC
Confidence 7889999999999975 4565433233333332 33333333333333 5689999999988887665544
No 37
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.76 E-value=1.4e-16 Score=150.15 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=137.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH--
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI-- 141 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl-- 141 (341)
||||||+|+||..|++.|.++|+ +|++|+|++++.+.+.+ .|. ...+..+++++||+||+|+|+ .+++.++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVTTIGPEVADELLA-AGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999995 99999999999988877 477 667888899999999999996 4677776
Q ss_pred -HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCC--chhhhcCc-eEEEEeCCCCCccH
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKG-ITGMCHDVHLDKES 214 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g-~~~l~~~~~~~~~~ 214 (341)
.++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++. .|- .+.....| ..++..++ +
T Consensus 76 ~~~~-~~~~--~~g~iivd~st-~~~~~~~~l~~~l~~-----~g~~-~~~-~pv~g~~~~a~~g~l~i~~gg~---~-- 139 (291)
T TIGR01505 76 ENGI-IEGA--KPGKTLVDMSS-ISPIESKRFAKAVKE-----KGID-YLD-APVSGGEIGAIEGTLSIMVGGD---Q-- 139 (291)
T ss_pred cchH-hhcC--CCCCEEEECCC-CCHHHHHHHHHHHHH-----cCCC-EEe-cCCCCCHHHHhcCCEEEEecCC---H--
Confidence 335 4556 78889997654 4443 45555542 2334 443 231 12222334 34455543 4
Q ss_pred HHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 215 EHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
+.++.++++|+.+|.. +++++..-...+.+.. +.+.+..++++.|+ +.+.|++.++..+++..+..++..
T Consensus 140 ~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~ 213 (291)
T TIGR01505 140 AVFDRVKPLFEALGKNIVLVGGNGDGQTCKVAN--QIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTV 213 (291)
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHH
Confidence 7889999999999975 4566543333344432 34555555555554 468999999999999877665443
No 38
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.75 E-value=8e-17 Score=151.79 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=138.9
Q ss_pred EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH---HH
Q psy316 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI---QG 143 (341)
Q Consensus 69 iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl---~~ 143 (341)
|||+|+||.+|+++|+++|+ +|++|||++++.+.+.+ .|+ ...++.++++++|+||+|||+ +++++++ .+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVFDLFPDAVEEAVA-AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 69999999999999999995 99999999999998877 577 677888999999999999997 6788888 66
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHH---HhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLK---KKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKESEHLN 218 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~---~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~~~~~ 218 (341)
+ .+.+ .++++||+++ +++++..+ +.+.. .+.. ++.+ +...+.....|. ++++.++ + +.++
T Consensus 76 l-~~~~--~~g~~vid~s-t~~p~~~~~~~~~~~~-----~g~~-~vdaPv~Gg~~~a~~g~l~~~~gg~---~--~~~~ 140 (288)
T TIGR01692 76 I-LPKV--AKGSLLIDCS-TIDPDSARKLAELAAA-----HGAV-FMDAPVSGGVGGARAGTLTFMVGGV---A--EEFA 140 (288)
T ss_pred H-hhcC--CCCCEEEECC-CCCHHHHHHHHHHHHH-----cCCc-EEECCCCCCHHHHhhCcEEEEECCC---H--HHHH
Confidence 7 6677 7889999875 77765443 33331 2334 4432 112223334454 4455553 3 7889
Q ss_pred HHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 219 MAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 219 ~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
.++++|+.+|.. +++++......+.+.. +.+.+..+.++.|+ +.+.|++.+...+++..+...+
T Consensus 141 ~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s 208 (288)
T TIGR01692 141 AAEPVLGPMGRNIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRC 208 (288)
T ss_pred HHHHHHHHhcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccC
Confidence 999999999974 5677655555555544 33444444455554 5699999999999888665443
No 39
>PLN02712 arogenate dehydrogenase
Probab=99.75 E-value=1.4e-16 Score=165.35 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=166.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
+.|||||||+|+||.+++++|.+.|+ +|++|+|+... +...+ +|+ ...+..+++. .+|+||+|||+..+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~dr~~~~-~~a~~-~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAYSRSDYS-DEAQK-LGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEEECChHH-HHHHH-cCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 56899999999999999999999884 89999998653 33333 577 5667777765 59999999999999999
Q ss_pred HHHhhhc-ccccCCCcEEEEecCC--CCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc-Cce---E-----EEEeCC
Q psy316 141 IQGLVND-KVTLNSSRCIISMLVG--VDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG-KGI---T-----GMCHDV 208 (341)
Q Consensus 141 l~~i~~~-~l~~~~~~iIVs~~ag--i~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~-~g~---~-----~l~~~~ 208 (341)
+.++ .. .+ +++++|+++.++ ...+.+++.++ .+.+ +++.||+.....+ .|. . .++.++
T Consensus 442 i~~l-~~~~l--k~g~ivvDv~SvK~~~~~~~~~~l~------~~~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~ 511 (667)
T PLN02712 442 LKSL-PFQRL--KRSTLFVDVLSVKEFPRNLFLQHLP------QDFD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSD 511 (667)
T ss_pred HHHH-HHhcC--CCCcEEEECCCccHHHHHHHHHhcc------CCCc-eEeeCCCCCccccccchhhhhhhccCcEeCCC
Confidence 9988 65 56 788999998665 34566777776 4567 8999998776654 231 1 111222
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
.... +..+.+.++|+.+|..+ +++.+.||..+|.+.+.|+.++ ....+.|++. ..+...++.....+
T Consensus 512 ~~~~--~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~L 579 (667)
T PLN02712 512 DRRV--SRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNL 579 (667)
T ss_pred cchH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHH
Confidence 2122 45566779999999865 5688999999998887776444 2234556541 33444455555544
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFSSAA 337 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~~a~ 337 (341)
+.+- ...+|..|.+....+... .+.|+.|++ ..++..+.+=+
T Consensus 580 i~Ri-------a~~~p~l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~ 623 (667)
T PLN02712 580 VENT-------AGDSFDLYYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRL 623 (667)
T ss_pred HHhh-------cCCCHHHHHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 235899999999888766 677777776 34555544433
No 40
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.74 E-value=5.7e-18 Score=133.27 Aligned_cols=93 Identities=32% Similarity=0.502 Sum_probs=80.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCc-ccc-ChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDF-ALN-DNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~-~~~-s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
||||||+|+||++|+++|+++|. ++++|+++ +|++++++++++++++ ... ++.++++++|+||+||||+++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 79999999999999999999996 67899955 9999999999887887 444 88999999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag 163 (341)
++ ... .++++|||+++|
T Consensus 80 ~i-~~~---~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHL---LKGKLVISIAAG 96 (96)
T ss_dssp HH-HHH---HTTSEEEEESTT
T ss_pred HH-hhc---cCCCEEEEeCCC
Confidence 98 554 489999999886
No 41
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.74 E-value=3.6e-16 Score=149.18 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=136.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|+||++++..|.++|+ +|++|+|++++.+.++++. ++ ...+..+.+.++|+||+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH----DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILV 77 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence 689999999999999999999984 8999999998887766531 34 45567778889999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH-------HHHHhccccCCCCCCCCeEEEEcCCchhhhcCce--
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE-------TLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI-- 201 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~-------~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~-- 201 (341)
|||++++++++.++ .+.+ .++++||++.+|++.+ .+++.++. .... .+...|+.+...+.|.
T Consensus 78 ~v~~~~~~~v~~~l-~~~~--~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~P~~~~~~~~g~~~ 148 (325)
T PRK00094 78 AVPSQALREVLKQL-KPLL--PPDAPIVWATKGIEPGTGKLLSEVLEEELPD-----LAPI-AVLSGPSFAKEVARGLPT 148 (325)
T ss_pred eCCHHHHHHHHHHH-Hhhc--CCCCEEEEEeecccCCCCCcHHHHHHHHcCC-----CCce-EEEECccHHHHHHcCCCc
Confidence 99999999999999 8888 7889999999888853 33444441 0123 5567788776655442
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchh---------HHHHHhc-------chHHHHHHHHHHHHHH---
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMN---------SFGAIAG-------SGCAYLFLVMDAMADG--- 262 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d---------~~~al~g-------~gpa~~~~~~eal~ea--- 262 (341)
..+..+ .+. +..+.+.++|+..|..+++.++... .+....| ..+.....+..++.|.
T Consensus 149 ~~~~~~--~~~--~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 149 AVVIAS--TDE--ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred EEEEEe--CCH--HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 222222 234 7889999999999976655433211 1100011 1122334445555554
Q ss_pred HHHcCCCHHHHHHHH
Q psy316 263 AVKQGIPRDMALRIG 277 (341)
Q Consensus 263 ~~~~Gl~~~~a~~lv 277 (341)
+.+.|++++++.++.
T Consensus 225 a~~~G~d~~~~~~~~ 239 (325)
T PRK00094 225 GVALGANPETFLGLA 239 (325)
T ss_pred HHHhCCChhhhhccc
Confidence 468999999887653
No 42
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.74 E-value=1e-15 Score=152.79 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=139.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CC--c-cccChHHHhh---cCCEEEEeeCh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MD--F-ALNDNHRIIK---EAEYVFLAMKP- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g--~-~~~s~~e~~~---~aDvIilaV~~- 134 (341)
.+|||||+|+||++||++|+++|+ +|++|||++++.+.+.+. .| + .+.+++++++ ++|+||++|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAG 77 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCCh
Confidence 479999999999999999999995 999999999998877642 14 3 5678888876 58999999865
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHH--HhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLK--KKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~--~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~ 211 (341)
+.++++++++ .+.+ .++++||++.++...++.+ +.+.. .+.. ++.+ +...+.....|.++++.|+
T Consensus 78 ~~v~~vi~~l-~~~L--~~g~iIID~gn~~~~dt~~r~~~l~~-----~Gi~-fldapVSGG~~gA~~G~~lm~GG~--- 145 (470)
T PTZ00142 78 EAVDETIDNL-LPLL--EKGDIIIDGGNEWYLNTERRIKRCEE-----KGIL-YLGMGVSGGEEGARYGPSLMPGGN--- 145 (470)
T ss_pred HHHHHHHHHH-HhhC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEcCCCCCCHHHHhcCCEEEEeCC---
Confidence 6899999999 9999 8999999997776544332 22221 2333 3321 1123333345666667664
Q ss_pred ccHHHHHHHHHHHHhcCCe-------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV-------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AV-KQGIPRDMALRIGA 278 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~-~~Gl~~~~a~~lv~ 278 (341)
+ +.++.++++|+.++.. .++++..-..+..+.. +...+..++++.|+ +. +.|++.++..+++.
T Consensus 146 ~--~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 146 K--EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred H--HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 4 8899999999999854 4667655555555554 34555666666665 23 58999999888874
No 43
>PLN02858 fructose-bisphosphate aldolase
Probab=99.73 E-value=2.8e-16 Score=173.68 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=157.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..||||||+|+||..|+++|+++|+ +|++|||++++.+.+.+ .|. .+.++.+++++||+||+|+|+ .++++|+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~dr~~~~~~~l~~-~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF----KVQAFEISTPLMEKFCE-LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence 4689999999999999999999995 99999999999999987 588 788999999999999999985 6788887
Q ss_pred ---HHhhhcccccCCCcEEEEecCCCCHHHHHH---hccccCCCCCC--CCeEEEE-cCCchhhhcCc-eEEEEeCCCCC
Q psy316 142 ---QGLVNDKVTLNSSRCIISMLVGVDLETLKK---KLSVLVPNPND--APTIIRV-MPNTAMKYGKG-ITGMCHDVHLD 211 (341)
Q Consensus 142 ---~~i~~~~l~~~~~~iIVs~~agi~~~~l~~---~l~~~~~~~~~--~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~ 211 (341)
.++ .+.+ ++++++|.+ +.++++..++ .+.. .+ .. ++.+ +...+.....| .++++.|+
T Consensus 79 ~g~~g~-~~~l--~~g~iivd~-STi~p~~~~~la~~l~~-----~g~~~~-~lDaPVsGg~~~A~~G~L~imvGG~--- 145 (1378)
T PLN02858 79 FGDEGA-AKGL--QKGAVILIR-STILPLQLQKLEKKLTE-----RKEQIF-LVDAYVSKGMSDLLNGKLMIIASGR--- 145 (1378)
T ss_pred hchhhH-HhcC--CCcCEEEEC-CCCCHHHHHHHHHHHHh-----cCCceE-EEEccCcCCHHHHhcCCeEEEEcCC---
Confidence 345 5566 788999987 5566654433 3331 22 23 3321 12333334455 45566664
Q ss_pred ccHHHHHHHHHHHHhcCCeE-Ec-CCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE-II-PESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~-~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
+ +.++.++++|+.+|..+ ++ ++..-...+.+.. +.+++..+.++.|+ +.+.|++++..++++..+..++..
T Consensus 146 ~--~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~n--N~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~ 221 (1378)
T PLN02858 146 S--DAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVN--ELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI 221 (1378)
T ss_pred H--HHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHH
Confidence 3 78999999999999865 34 6544344444432 33444445555554 579999999999999988665543
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
+.. ....+.+.-.+|+++...+.+.|
T Consensus 222 -~~~-----------~~~~~~~~d~~~~F~l~l~~KDl 247 (1378)
T PLN02858 222 -FKN-----------HVPLLLKDDYIEGRFLNVLVQNL 247 (1378)
T ss_pred -HHh-----------hhhHhhcCCCCCCchhHHHHHHH
Confidence 322 12344445567766666666555
No 44
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.73 E-value=2.3e-16 Score=151.62 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=141.7
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~~~s~ 118 (341)
|||.|.|+||- |.+||.+|.++|+ +|++|+|+++ +.+.+.+ .|+ .+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~Dr~~~~l~~~~~~~l~~-~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLAEPNRSILSEELWKKVED-AGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEEECCHHHhhHHHHHHHHH-CCCEEeCCH
Confidence 57888888873 7889999999994 9999999987 3444544 577 67788
Q ss_pred HHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHH----HHHHhccccCCCCCCCCeEEEEcCCc
Q psy316 119 HRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLE----TLKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~----~l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
.++++++|+||+|+|+.. +++++.++ .+.+ .++++||+++++ +.. .+++.++ ...+ .+++++++
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L-~~~L--~~g~IVId~ST~-~~~~~s~~l~~~l~------~~~~-~~gi~~~~ 144 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNI-LPHL--PENAVICNTCTV-SPVVLYYSLEGELR------TKRK-DVGISSMH 144 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHH-HhhC--CCCCEEEEecCC-CHHHHHHHHHHHhc------cccc-ccCeeecC
Confidence 888999999999999877 89999999 8888 788899987654 443 3445554 1223 34555554
Q ss_pred hhhh----cCceEEEEeCC-----CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhH-------HHHHhcchHHHHHHHH
Q psy316 194 AMKY----GKGITGMCHDV-----HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNS-------FGAIAGSGCAYLFLVM 256 (341)
Q Consensus 194 p~~v----~~g~~~l~~~~-----~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~-------~~al~g~gpa~~~~~~ 256 (341)
|..+ ..+.++++.+. ..++ ++++.++++|+.+|..+ ++++...+. +++++.+++++.+.+.
T Consensus 145 p~~v~Gae~g~l~Vm~gg~t~~~~~~~~--e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~ 222 (342)
T PRK12557 145 PAAVPGTPQHGHYVIAGKTTNGTELATE--EQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVG 222 (342)
T ss_pred CccccccccchheEEeCCCcccccCCCH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 33455554331 1245 78999999999999854 456543333 5555555555555443
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHh
Q psy316 257 DAMADGAVKQG-IPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 257 eal~ea~~~~G-l~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.+.| .+++.+.+++.+++.|+++|+++
T Consensus 223 -------~~~~~~p~~~~~~~~~~~~~~~a~l~~~ 250 (342)
T PRK12557 223 -------TKIIKAPKEMIEKQILMTLQTMASLVET 250 (342)
T ss_pred -------HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 45777899999999999999976
No 45
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.72 E-value=7.3e-17 Score=146.21 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=117.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CCc----cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MDF----ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g~----~~~s~~e~~~~aDvIilaV 132 (341)
|||+||| +|+||+++++.|.++| ++|++++|++++++.+.++ .|+ ...+..+.+.++|+||+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G----~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG----NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC----CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899997 8999999999999998 4999999999887765432 122 2246677889999999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-----------------HHHHHhccccCCCCCCCCeEEEEcCCchh
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-----------------ETLKKKLSVLVPNPNDAPTIIRVMPNTAM 195 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-----------------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~ 195 (341)
|++.+.++++++ .+.+ . +++|||+++|++. +.++++++ ...+ |+++|||++.
T Consensus 77 p~~~~~~~l~~l-~~~l--~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p------~~~~-VVka~~~~~a 145 (219)
T TIGR01915 77 PWDHVLKTLESL-RDEL--S-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLP------ETSR-VVAAFHNLSA 145 (219)
T ss_pred CHHHHHHHHHHH-HHhc--c-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCC------CCCe-EeeccccCCH
Confidence 999999999998 8777 4 5899999999986 55777777 3478 9999999887
Q ss_pred hhcCc------eEEEEeCCCCCccHHHHHHHHHHHHhc-CCeE
Q psy316 196 KYGKG------ITGMCHDVHLDKESEHLNMAIKIMEQG-GIVE 231 (341)
Q Consensus 196 ~v~~g------~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~~~ 231 (341)
....+ ...+++++. + +..+.|..|.+.+ |...
T Consensus 146 ~~~~~~~~~~~~~~~v~Gdd--~--~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGDD--E--EAKEVVAELAGRIDGLRA 184 (219)
T ss_pred HHhcCCCCCCCCCEEEECCC--H--HHHHHHHHHHHhcCCCCc
Confidence 65432 334555542 4 6788999999999 8753
No 46
>PLN02712 arogenate dehydrogenase
Probab=99.72 E-value=1.3e-15 Score=158.09 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=157.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~v 140 (341)
-++||+|||+|+||.+++++|.+.|+ +|++|+|+... +... ++|+ ...++.+++ .++|+||+|||++.+.++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~dr~~~~-~~A~-~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~v 124 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH----TVLAHSRSDHS-LAAR-SLGVSFFLDPHDLCERHPDVILLCTSIISTENV 124 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEEeCCHHH-HHHH-HcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHH
Confidence 35689999999999999999999984 89999998544 3333 3677 666777755 569999999999999999
Q ss_pred HHHhhh-cccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchhhhc----CceEEEEe----CC
Q psy316 141 IQGLVN-DKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG----KGITGMCH----DV 208 (341)
Q Consensus 141 l~~i~~-~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~----~g~~~l~~----~~ 208 (341)
+.++ . +.+ +++++|+++. +++. +.+++.++ .+.. ++..||..-.+.. .+...++. ++
T Consensus 125 l~~l-~~~~l--~~g~iVvDv~-SvK~~~~~~l~~~l~------~~~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~ 193 (667)
T PLN02712 125 LKSL-PLQRL--KRNTLFVDVL-SVKEFAKNLLLDYLP------EDFD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGN 193 (667)
T ss_pred HHhh-hhhcC--CCCeEEEECC-CCcHHHHHHHHHhcC------CCCe-EEeeCCcCCCccccchhccCcEEEeeccCCC
Confidence 9988 6 567 7888999884 4553 34556666 4567 8899886433211 12222222 11
Q ss_pred C-CCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 209 H-LDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 209 ~-~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
. ... +..+.++++|+.+|..+ +++.+.||.+.|.+.+.|++++..+..+... ...+.... ++...... .+
T Consensus 194 ~~~~~--~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~--~~~~~~~~-~~~~l~l~---~R 265 (667)
T PLN02712 194 EELRV--SRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLE--STPINTKG-YESLLDLV---EN 265 (667)
T ss_pred ccccH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCcc-HHHHHHHH---HH
Confidence 1 111 34667789999999865 5699999999999999998776654322210 00111000 11221121 34
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
++. .+|+.|.+....+. ...+.|+.|++ ..++..+.
T Consensus 266 ia~-----------~~p~L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 266 TCG-----------DSFDLYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred Hhc-----------CCHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 442 48999999999987 77778888877 34444443
No 47
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=8.8e-16 Score=147.24 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=134.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C------c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D------F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g------~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|+||++|+..|.++|+ +|++|+|++++.+.+.+.. | + .+.++.++++++|+||+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV----PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 589999999999999999999994 9999999988877665421 2 3 45577788899999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce---E
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI---T 202 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~---~ 202 (341)
|||+++++++++.+ +++.++|++++|+. ...+.+.++... .... .+...|+.+..++.|. +
T Consensus 81 ~v~~~~~~~v~~~l-------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~---~~~~-~~~~gP~~a~~~~~~~~~~~ 149 (328)
T PRK14618 81 AVPSKALRETLAGL-------PRALGYVSCAKGLAPDGGRLSELARVLEFLT---QARV-AVLSGPNHAEEIARFLPAAT 149 (328)
T ss_pred ECchHHHHHHHHhc-------CcCCEEEEEeeccccCCCccchHHHHHHHhc---CCCe-EEEECccHHHHHHcCCCeEE
Confidence 99999988888666 46678999999876 445555554100 1222 5677899888876653 2
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHH--------HHH-hcch-------HHHHHHHHHHHHHH---H
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF--------GAI-AGSG-------CAYLFLVMDAMADG---A 263 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~--------~al-~g~g-------pa~~~~~~eal~ea---~ 263 (341)
.+..+ ++ +..+.++++|+..|..++++++..... .++ .|.+ +...+.+..++.|+ +
T Consensus 150 ~~~~~---~~--~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 150 VVASP---EP--GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEEeC---CH--HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 33333 34 788999999999998877654422211 111 1111 12333444455554 4
Q ss_pred HHcCCCHHHHHHHHH
Q psy316 264 VKQGIPRDMALRIGA 278 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~ 278 (341)
.+.|++++++.++..
T Consensus 225 ~~~G~~~~~~~~~~~ 239 (328)
T PRK14618 225 VALGAEEATFYGLSG 239 (328)
T ss_pred HHhCCCccchhcCcc
Confidence 689999999888754
No 48
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=2.8e-16 Score=147.54 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=122.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcCC------------Cc-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEPM------------DF-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~~------------g~-~~~s~~e 120 (341)
+||+|||+|.||.+|+..|+++|+ +|+++|++++++++ +.+.. ++ .+++. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~----~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY----DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-D 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 479999999999999999999984 99999999988742 22211 12 23444 4
Q ss_pred HhhcCCEEEEeeChHHH--HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQYL--DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v--~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||+|+|++.. .+++.++ .+++ +++++|+|.++|++++.+++.++ ...+ ++++||+.|+.+.
T Consensus 79 ~~~~aDlVi~av~e~~~~k~~~~~~l-~~~~--~~~~il~s~ts~~~~~~la~~~~------~~~r-~ig~h~~~P~~~~ 148 (282)
T PRK05808 79 DLKDADLVIEAATENMDLKKKIFAQL-DEIA--KPEAILATNTSSLSITELAAATK------RPDK-VIGMHFFNPVPVM 148 (282)
T ss_pred HhccCCeeeecccccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHHhhC------CCcc-eEEeeccCCcccC
Confidence 57899999999986433 5888898 8888 88999999999999999999887 4568 9999999999988
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.++. ++.++..++ +..+.+.++|+.+|+...
T Consensus 149 ~~ve-v~~g~~t~~--e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 149 KLVE-IIRGLATSD--ATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ccEE-EeCCCCCCH--HHHHHHHHHHHHcCCeeE
Confidence 8876 677777777 999999999999998653
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=99.70 E-value=1e-15 Score=169.18 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=153.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~v 140 (341)
+.++|||||+|+||.+|+++|+++|+ +|++|||++++.+.+.+ .|. ...++.+++++||+||+||| |+++++|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~-~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGYDVYKPTLVRFEN-AGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 45789999999999999999999995 99999999999988877 476 67788999999999999999 7889999
Q ss_pred HH---HhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCc-eEEEEeCCCCCc
Q psy316 141 IQ---GLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKG-ITGMCHDVHLDK 212 (341)
Q Consensus 141 l~---~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~~ 212 (341)
+. ++ .+.+ ++++++|.+ ++++++. +.+.+.. .+.+.. ++.+ +...|.....| .++++.|+ +
T Consensus 398 l~g~~g~-~~~l--~~g~ivVd~-STvsP~~~~~la~~l~~---~g~g~~-~lDAPVsGg~~~A~~G~L~imvgG~---~ 466 (1378)
T PLN02858 398 LFGDLGA-VSAL--PAGASIVLS-STVSPGFVIQLERRLEN---EGRDIK-LVDAPVSGGVKRAAMGTLTIMASGT---D 466 (1378)
T ss_pred HhchhhH-HhcC--CCCCEEEEC-CCCCHHHHHHHHHHHHh---hCCCcE-EEEccCCCChhhhhcCCceEEEECC---H
Confidence 83 35 4556 788999987 4555544 3333331 001223 3321 12334444455 46666664 4
Q ss_pred cHHHHHHHHHHHHhcCCeE-Ec-CCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVE-II-PESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~-~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
+.++.++++|+.+|..+ ++ ++..-...+.+.. +.+.+..+.++.|+ +.+.|++.+..++++..+...+. +
T Consensus 467 --~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~n--N~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~-~ 541 (1378)
T PLN02858 467 --EALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVN--QLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSW-M 541 (1378)
T ss_pred --HHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCh-h
Confidence 78999999999999865 43 4333334444432 33344444455554 46899999999999988765543 3
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
+.. .-| .+.+.-++|+.+.....+.|
T Consensus 542 ~~~----------~~~-~~l~~d~~~~f~l~l~~KDl 567 (1378)
T PLN02858 542 FEN----------RVP-HMLDNDYTPYSALDIFVKDL 567 (1378)
T ss_pred hhh----------ccc-hhhcCCCCCCchhHHHHHHH
Confidence 332 123 33344456665555555444
No 50
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.70 E-value=3.1e-15 Score=149.35 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=137.8
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc-cccChHHHh---hcCCEEEEeeCh-HH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF-ALNDNHRII---KEAEYVFLAMKP-QY 136 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~-~~~s~~e~~---~~aDvIilaV~~-~~ 136 (341)
+|||||+|+||.+|+++|+++|+ +|++|||++++.+.+.++. ++ ...++.+++ .++|+||+|||+ ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48999999999999999999995 9999999999999887642 24 456677766 368999999998 78
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHH--HhccccCCCCCCCCeEEEEc-CCchhhhcCceEEEEeCCCCCcc
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLK--KKLSVLVPNPNDAPTIIRVM-PNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~--~~l~~~~~~~~~~~~vvr~m-pn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
+++++.++ .+++ .++++||++.++...+..+ +.+.. .+.. ++.+. ...+.....|.+++..|+ +
T Consensus 77 v~~Vi~~l-~~~L--~~g~iIID~gns~~~~t~~~~~~l~~-----~gi~-fvdapVsGG~~gA~~G~~im~GG~---~- 143 (467)
T TIGR00873 77 VDAVINQL-LPLL--EKGDIIIDGGNSHYPDTERRYKELKA-----KGIL-FVGSGVSGGEEGARKGPSIMPGGS---A- 143 (467)
T ss_pred HHHHHHHH-HhhC--CCCCEEEECCCcCHHHHHHHHHHHHh-----cCCE-EEcCCCCCCHHHHhcCCcCCCCCC---H-
Confidence 99999999 8988 8999999987655443322 22221 2333 33321 122333345666665554 4
Q ss_pred HHHHHHHHHHHHhcCCe-------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA----VKQGIPRDMALRIGA 278 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~----~~~Gl~~~~a~~lv~ 278 (341)
+.++.++++|+.++.. .++++..-..+..+.. +...+..++++.|+. .+.|++.++..+++.
T Consensus 144 -~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvh--N~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 144 -EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVH--NGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred -HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8899999999999864 4667655555555554 345566666777753 259999999888883
No 51
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.69 E-value=2.3e-15 Score=145.72 Aligned_cols=219 Identities=11% Similarity=0.105 Sum_probs=149.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
++||+|||+ |.||+++++.|.+.. .++|+.+||+.+ ...++.+.+.+||+||+|||+..+.++++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~---~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~~l~ 69 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM---QLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHTAALIE 69 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC---CCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH
Confidence 578999999 999999999998751 358999998511 12356778899999999999999999999
Q ss_pred Hhhhcc---cccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh---cCce-EEEEeCCCCCccHH
Q psy316 143 GLVNDK---VTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY---GKGI-TGMCHDVHLDKESE 215 (341)
Q Consensus 143 ~i~~~~---l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v---~~g~-~~l~~~~~~~~~~~ 215 (341)
++ .++ + +++++|.++ ++++..-++..++ ...+ ++..+|..-.+. -+|. .++++.. .. +
T Consensus 70 ~l-~~~~~~l--~~~~iVtDV-gSvK~~i~~~~~~------~~~~-fVG~HPMaG~E~s~lf~g~~~iltp~~--~~--~ 134 (370)
T PRK08818 70 EY-VALAGGR--AAGQLWLDV-TSIKQAPVAAMLA------SQAE-VVGLHPMTAPPKSPTLKGRVMVVCEAR--LQ--H 134 (370)
T ss_pred HH-hhhhcCC--CCCeEEEEC-CCCcHHHHHHHHh------cCCC-EEeeCCCCCCCCCcccCCCeEEEeCCC--ch--h
Confidence 98 765 6 677776665 6677665555555 3346 778777543221 1343 4455542 23 5
Q ss_pred HHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCH-H--HHHHHHHHHHH-HH---HHH
Q psy316 216 HLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPR-D--MALRIGAQLLK-GS---GQL 287 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~-~--~a~~lv~~~~~-gs---~~l 287 (341)
..+.++++++.+|..+ +++.+.||.++|...+.|++.+..+..+.. ...... + ....+...+|+ .. .++
T Consensus 135 ~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRI 211 (370)
T PRK08818 135 WSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARI 211 (370)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchh
Confidence 5778999999999865 569999999999998777766665444432 111110 1 11134444444 22 233
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
. ..+|..|.+...++. ...+.|+.|.+
T Consensus 212 A-----------ss~P~mW~dI~~~N~-~i~~~l~~~~~ 238 (370)
T PRK08818 212 L-----------SLNPSIYEDIQFGNP-YVGEMLDRLLA 238 (370)
T ss_pred h-----------cCCHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 3 358999999999998 77777777765
No 52
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.68 E-value=1.3e-15 Score=141.37 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=152.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcE
Q psy316 79 VATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRC 156 (341)
Q Consensus 79 ia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~i 156 (341)
||+.|.++|. ..+|+.+|++++.++...+ .|+ ...+..+.+.++|+||+|||+..+.++++++ .+++ +++++
T Consensus 1 ~A~aL~~~g~--~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~-~~~~--~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGYDRDPETLEAALE-LGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEI-APYL--KPGAI 74 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE-SSHHHHHHHHH-TTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHH-HCGS---TTSE
T ss_pred ChHHHHhCCC--CeEEEEEeCCHHHHHHHHH-CCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHh-hhhc--CCCcE
Confidence 5788999983 4699999999998877655 576 2233367899999999999999999999999 9988 88888
Q ss_pred EEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchh-----------hhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 157 IISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAM-----------KYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 157 IVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-----------~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
|+++ ++++. +.+++.++ .+.+ ++..+|..-. .+.....++++.+..+. +..+.++.
T Consensus 75 v~Dv-~SvK~~~~~~~~~~~~------~~~~-~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~--~~~~~~~~ 144 (258)
T PF02153_consen 75 VTDV-GSVKAPIVEAMERLLP------EGVR-FVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP--EALELVEE 144 (258)
T ss_dssp EEE---S-CHHHHHHHHHHHT------SSGE-EEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H--HHHHHHHH
T ss_pred EEEe-CCCCHHHHHHHHHhcC------cccc-eeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH--HHHHHHHH
Confidence 8877 56664 44555555 3556 7888775322 11122456777766555 78999999
Q ss_pred HHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 223 IMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 223 ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
+++.+|..+ +++.+.||..+|++++.|++++.. ++....+.+.+......+...+++...++.. .
T Consensus 145 l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~a---l~~~~~~~~~~~~~~~~~a~~~frd~tRia~-----------~ 210 (258)
T PF02153_consen 145 LWEALGARVVEMDAEEHDRIMAYVSHLPHLLASA---LANTLAELSSDDPDILRLAGGGFRDMTRIAS-----------S 210 (258)
T ss_dssp HHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG-----------S
T ss_pred HHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCChHHHHhhcchhHHhhccccc-----------C
Confidence 999999864 568999999999999999877664 3333333333455667777777777765543 4
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
+|+.|.+...++.....+.|..+.+
T Consensus 211 ~p~l~~~I~~~N~~~~~~~l~~~~~ 235 (258)
T PF02153_consen 211 DPELWADIFLSNPENLLEALDEFIK 235 (258)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8999999988888878888888776
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.68 E-value=5.4e-15 Score=139.74 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=120.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcC-----------CCc-cccChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEP-----------MDF-ALNDNHRI 121 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~-----------~g~-~~~s~~e~ 121 (341)
+||+|||+|.||.+|+..|+++|+ +|++||+++++++. +.+. ++. ...+..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM----DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH
Confidence 579999999999999999999994 99999999987653 2211 122 23344567
Q ss_pred hhcCCEEEEeeC--hHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMK--PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~--~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||+||| ++....++.++ .+.+ +++++|+|.++++++..+++.+. ...+ ++++++..|...+.
T Consensus 81 ~~~aD~Vieav~e~~~~k~~v~~~l-~~~~--~~~~il~s~tS~i~~~~l~~~~~------~~~r-~~g~h~~~pp~~~~ 150 (295)
T PLN02545 81 LRDADFIIEAIVESEDLKKKLFSEL-DRIC--KPSAILASNTSSISITRLASATQ------RPQQ-VIGMHFMNPPPIMK 150 (295)
T ss_pred hCCCCEEEEcCccCHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------CCcc-eEEEeccCCcccCc
Confidence 899999999999 77777788888 7777 78889999999999999998876 3467 88998776666554
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
. +.++.++..++ +..+.++++|+.+|+.+++
T Consensus 151 l-veiv~g~~t~~--e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 151 L-VEIIRGADTSD--EVFDATKALAERFGKTVVC 181 (295)
T ss_pred e-EEEeCCCCCCH--HHHHHHHHHHHHcCCeeEE
Confidence 3 45667766777 8999999999999997654
No 54
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.66 E-value=1.5e-14 Score=137.72 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=135.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-----------cCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-----------EPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-----------~~~g-------------~-~~~s~~ 119 (341)
++|+|||+|.||++|+..|+++|+ +|++|||+++..+... + .| + .+.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~d~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLWDADPAAAAAAPAYIAGRLEDLAA-FDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCchhhHHHHhcCeEEECcHH
Confidence 589999999999999999999995 9999999987666421 2 12 2 445777
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
++++++|+||+|+|.. ....++.++ .... .++.+|.|.+.+.....+.+.+. ...+ ++..+|-.|...
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l-~~~~--~~~~ii~ssts~~~~~~la~~~~------~~~~-~~~~hp~~p~~~ 147 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAEL-DALA--PPHAILASSTSALLASAFTEHLA------GRER-CLVAHPINPPYL 147 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHH-HHhC--CCcceEEEeCCCCCHHHHHHhcC------Cccc-EEEEecCCCccc
Confidence 7889999999999964 455666777 6666 56667777777777888888776 3345 666666555432
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRI 276 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~l 276 (341)
. ....+++++..++ +.++.++++++.+|+. ++++.+....+.. ..+.+.+.|++.- +.+.|+++++..++
T Consensus 148 ~-~lveiv~~~~t~~--~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n-----rl~~a~~~EA~~l-~~~g~~~~~~id~~ 218 (308)
T PRK06129 148 I-PVVEVVPAPWTAP--ATLARAEALYRAAGQSPVRLRREIDGFVLN-----RLQGALLREAFRL-VADGVASVDDIDAV 218 (308)
T ss_pred C-ceEEEeCCCCCCH--HHHHHHHHHHHHcCCEEEEecCCCccHHHH-----HHHHHHHHHHHHH-HHcCCCCHHHHHHH
Confidence 2 2445677666667 8999999999999986 4565443232111 1233444455433 35678999998887
Q ss_pred HHHHHH
Q psy316 277 GAQLLK 282 (341)
Q Consensus 277 v~~~~~ 282 (341)
+..++.
T Consensus 219 ~~~~~g 224 (308)
T PRK06129 219 IRDGLG 224 (308)
T ss_pred HHhccC
Confidence 765543
No 55
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=1.8e-14 Score=138.93 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=119.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C--------Cc-cccChHHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M--------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~--------g~-~~~s~~e~~~~aDvI 128 (341)
+|||+|||+|+||++++..|.++| ++.+|.|+++..+.+++. + ++ ...+..+++..+|+|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-----~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-----PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-----CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 378999999999999999999987 478888998887665432 1 12 345666778899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI 201 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~ 201 (341)
|++||+++++++++++ ++++ ++++++|++++|+.. +.+++.++ .... .+..+||.+.++..|.
T Consensus 82 ilavps~~~~~vl~~i-~~~l--~~~~~vIsl~kGi~~~t~~~~se~i~~~l~------~~~~-~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 82 VMGVPSHGFRGVLTEL-AKEL--RPWVPVVSLVKGLEQGTNMRMSQIIEEVLP------GHPA-GILAGPNIAREVAEGY 151 (341)
T ss_pred EEEeCHHHHHHHHHHH-Hhhc--CCCCEEEEEEeCCcCCCCCcHHHHHHHHcC------CCCe-EEEECCCHHHHHHcCC
Confidence 9999999999999999 9988 788899999999985 46666665 2233 6688999999888775
Q ss_pred E--EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 202 T--GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 202 ~--~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
. .+.... +. +..+.++++|+.-+..++++++
T Consensus 152 ~t~~via~~--~~--~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 152 AAAAVLAMP--DQ--HLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred CeEEEEEeC--CH--HHHHHHHHHhCCCCEEEEEcCc
Confidence 2 222222 34 6778899999998887777655
No 56
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.63 E-value=3.6e-14 Score=134.04 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=121.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-----------ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-----------LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-----------~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|+||+.++..|.++|+ +|++++|++++.+.+.++ |. . ..+..++ ..+|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 589999999999999999999984 999999988887766552 33 1 2334443 8899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEE---------EEcCCchhhhcCceE
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTII---------RVMPNTAMKYGKGIT 202 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vv---------r~mpn~p~~v~~g~~ 202 (341)
|+.++.++++++ .+.+ .++++||++.+|+. .+.+.+.++. .. ++ +..|+.....+.|..
T Consensus 75 k~~~~~~~~~~l-~~~l--~~~~~iv~~~nG~~~~~~l~~~~~~-------~~-i~~~~~~~~~~~~~p~~v~~~~~g~~ 143 (304)
T PRK06522 75 KAYQLPAALPSL-APLL--GPDTPVLFLQNGVGHLEELAAYIGP-------ER-VLGGVVTHAAELEGPGVVRHTGGGRL 143 (304)
T ss_pred ccccHHHHHHHH-hhhc--CCCCEEEEecCCCCcHHHHHHhcCc-------cc-EEEEEEEEeeEecCCCEEEEcCCCCE
Confidence 999999999999 9888 77889999999998 5667776661 22 22 334555555555655
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA 250 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa 250 (341)
.+...+. .. +..+.+.++|+..|..+++.++ .++.++++.++.+.
T Consensus 144 ~ig~~~~-~~--~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 144 KIGEPDG-ES--AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred EEeCCCC-Cc--HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 4443322 22 4467788889988877666554 45678888887544
No 57
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.62 E-value=1.1e-14 Score=137.55 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=121.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------C-------------c-cccC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------D-------------F-ALND 117 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g-------------~-~~~s 117 (341)
+||+|||+|.||.+|+..|.++|+ +|++||+++++++...+. + | + ..++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY----DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 589999999999999999999995 999999999876532110 0 1 1 1223
Q ss_pred hHHHhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchh
Q psy316 118 NHRIIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAM 195 (341)
Q Consensus 118 ~~e~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~ 195 (341)
. +.+++||+||+|+|++. ..++++++ .+.+ +++++|+|.++|+++..+.+.+. ...+ +++.+++.|.
T Consensus 80 ~-~~~~~aDlVieav~e~~~~k~~~~~~l-~~~~--~~~~il~S~tsg~~~~~la~~~~------~~~r-~ig~hf~~P~ 148 (291)
T PRK06035 80 Y-ESLSDADFIVEAVPEKLDLKRKVFAEL-ERNV--SPETIIASNTSGIMIAEIATALE------RKDR-FIGMHWFNPA 148 (291)
T ss_pred H-HHhCCCCEEEEcCcCcHHHHHHHHHHH-HhhC--CCCeEEEEcCCCCCHHHHHhhcC------Cccc-EEEEecCCCc
Confidence 3 56789999999998764 66788888 8888 78899999999999999998886 4567 9999999888
Q ss_pred hhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 196 KYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 196 ~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
.+..++.+ ..++..++ +.++.+.++++.+|+.. ++.
T Consensus 149 ~~~~~vEv-~~g~~T~~--e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 149 PVMKLIEV-VRAALTSE--ETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred ccCccEEE-eCCCCCCH--HHHHHHHHHHHHcCCeEEEeC
Confidence 77766654 46777777 99999999999999865 454
No 58
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=7.6e-14 Score=131.72 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=115.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNH 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~ 119 (341)
.+||+|||+|.||.+|+..|+.+|+ +|++|||++++++.+.+. .| + ...+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY----DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-
Confidence 4689999999999999999999995 999999999887653210 02 2 23444
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||+|+|.+ ..+.++.++ .+.+ +++++|+|.++++++..+++.+. ...+ ++.+++-.|...
T Consensus 79 ~~~~~aD~Vieavpe~~~~k~~~~~~l-~~~~--~~~~ii~s~ts~~~~s~la~~~~------~~~r-~~g~h~~~p~~~ 148 (292)
T PRK07530 79 EDLADCDLVIEAATEDETVKRKIFAQL-CPVL--KPEAILATNTSSISITRLASATD------RPER-FIGIHFMNPVPV 148 (292)
T ss_pred HHhcCCCEEEEcCcCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-EEEeeccCCccc
Confidence 4578999999999853 456677888 8888 88899999999999988888765 3356 666555445444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
..++ -+..+...++ +.++.+.++|+.+|+..++
T Consensus 149 ~~~v-ei~~g~~t~~--~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 149 MKLV-ELIRGIATDE--ATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred CceE-EEeCCCCCCH--HHHHHHHHHHHHcCCeEEE
Confidence 4444 4566666777 9999999999999987544
No 59
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.59 E-value=2e-13 Score=130.81 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=107.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C-------Cc-cccChHHHh-hcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M-------DF-ALNDNHRII-KEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~-------g~-~~~s~~e~~-~~aDvIi 129 (341)
|||+|||+|+||++++..|.++| ++|++|+|+++..+.+++. . ++ ...+..+.+ ..+|+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g----~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dlii 76 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK----ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCII 76 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC----CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEE
Confidence 58999999999999999999998 4999999998877665431 0 12 234555655 5899999
Q ss_pred EeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEE-EEcCCchhhhcCc
Q psy316 130 LAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTII-RVMPNTAMKYGKG 200 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vv-r~mpn~p~~v~~g 200 (341)
++||++++.++++++ ++ ++ .+++.||++++|+.. +.+.+.++ ..+ +. ...|+.+.+...+
T Consensus 77 iavks~~~~~~l~~l-~~~~l--~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~-------~~~-~~~~~Gp~~a~~~~~~ 145 (326)
T PRK14620 77 LAVPTQQLRTICQQL-QDCHL--KKNTPILICSKGIEKSSLKFPSEIVNEILP-------NNP-IAILSGPSFAKEIAEK 145 (326)
T ss_pred EEeCHHHHHHHHHHH-HHhcC--CCCCEEEEEEcCeeCCCCccHHHHHHHHcC-------CCc-eEeecCCcHHHHHHcC
Confidence 999999999999999 88 88 777788889999864 45566665 234 33 3346644444333
Q ss_pred -eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 201 -ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 201 -~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
.+.+.... .+. +..+.+.++|+.-+..++++++
T Consensus 146 ~~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 146 LPCSIVLAG-QNE--TLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred CCcEEEEec-CCH--HHHHHHHHHHCCCCeEEEecCc
Confidence 22222221 123 4556777788777777776654
No 60
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=2.3e-13 Score=128.17 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=120.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------------CCc-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------------MDF-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------------~g~-~~~s~~ 119 (341)
+||+|||+|.||.+||..|..+|+ +|++|++++++++.+.+. .++ .+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF----DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 589999999999999999999984 999999998766544321 022 356677
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+++++||+||.|+|.+ ...++++++ .+.+ +++++|++..++++++.+.+.+. ...+ ++..+|..|...
T Consensus 80 ~a~~~aDlVieavpe~~~~k~~~~~~l-~~~~--~~~~ii~sntSt~~~~~~~~~~~------~~~r-~vg~Hf~~p~~~ 149 (287)
T PRK08293 80 EAVKDADLVIEAVPEDPEIKGDFYEEL-AKVA--PEKTIFATNSSTLLPSQFAEATG------RPEK-FLALHFANEIWK 149 (287)
T ss_pred HHhcCCCEEEEeccCCHHHHHHHHHHH-HhhC--CCCCEEEECcccCCHHHHHhhcC------Cccc-EEEEcCCCCCCc
Confidence 7889999999999954 677888888 8888 77888888888888888888776 3457 788887666443
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCc
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESM 237 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~ 237 (341)
. ....++.++..++ +..+.+.++++.+|+.. .+..+.
T Consensus 150 ~-~lvevv~~~~t~~--~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 150 N-NTAEIMGHPGTDP--EVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-CeEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEecCCC
Confidence 2 3445666777777 89999999999999864 454343
No 61
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=1.5e-13 Score=129.41 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=117.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C-------------Cc-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M-------------DF-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~-------------g~-~~~s~~e 120 (341)
+||+|||+|.||..||..|.++|+ +|++||+++++++.+.+. . ++ .+.+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH
Confidence 589999999999999999999995 999999999887765421 0 12 3456678
Q ss_pred HhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||+|+|.+. ...++.++ .+.+ +++++|++.+++++++.+.+.+. ...+ .+..++-.|...+
T Consensus 78 ~~~~aD~Vi~avpe~~~~k~~~~~~l-~~~~--~~~~il~~~tSt~~~~~l~~~~~------~~~r-~~g~h~~~Pv~~~ 147 (288)
T PRK09260 78 AVADADLVIEAVPEKLELKKAVFETA-DAHA--PAECYIATNTSTMSPTEIASFTK------RPER-VIAMHFFNPVHKM 147 (288)
T ss_pred hhcCCCEEEEeccCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-EEEEecCCCcccC
Confidence 8999999999999653 34566778 7777 78888877888899998888776 3345 5555555455433
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE 235 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e 235 (341)
....+++++..++ +.++.++++++.+|+.. ++.+
T Consensus 148 -~Lve~v~g~~t~~--~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 148 -KLVELIRGLETSD--ETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred -ceEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEecC
Confidence 3556777776777 99999999999999864 4553
No 62
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.58 E-value=2.9e-13 Score=127.64 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=120.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------Cc-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g~-~~~s~~e~~~~aDvIi 129 (341)
++||+|||+|++|++||..|.++| ++|.+|.|+++..+++.+. | ++ .+.|..++++++|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng----~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG----HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC----CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEE
Confidence 368999999999999999999999 4999999999888877653 1 13 4678889999999999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce-
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI- 201 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~- 201 (341)
++||.+.++++++++ ++++ .+++++|+++.|+.. +.+++.++ ..++.+-..||.+.++.+|.
T Consensus 77 ~avPs~~~r~v~~~l-~~~l--~~~~~iv~~sKGie~~t~~l~seii~e~l~-------~~~~~vLSGPs~A~EVa~g~p 146 (329)
T COG0240 77 IAVPSQALREVLRQL-KPLL--LKDAIIVSATKGLEPETGRLLSEIIEEELP-------DNPIAVLSGPSFAKEVAQGLP 146 (329)
T ss_pred EECChHHHHHHHHHH-hhhc--cCCCeEEEEeccccCCCcchHHHHHHHHcC-------CCeEEEEECccHHHHHhcCCC
Confidence 999999999999999 8888 899999999999875 34455565 22325567799999988773
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.++... .+. +..+.++.+|..=-..++.+++
T Consensus 147 ta~~vas-~d~--~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 147 TAVVVAS-NDQ--EAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred cEEEEec-CCH--HHHHHHHHHhCCCcEEEEecCc
Confidence 3333221 223 6777888999874445555555
No 63
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.57 E-value=1.8e-15 Score=125.24 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.+||+|||+|++|.+|++.|.++|+ .|. +++|++++.+.++..++. ...+..+.+.++|+|||+||++.+.++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH
Confidence 5799999999999999999999995 664 678998888887775555 5556778899999999999999999999
Q ss_pred HHhhhcc--cccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 142 QGLVNDK--VTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~--l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++ ... + +++++|+++++..+.+.|+..-.
T Consensus 86 ~~L-a~~~~~--~~g~iVvHtSGa~~~~vL~p~~~ 117 (127)
T PF10727_consen 86 EQL-AQYGAW--RPGQIVVHTSGALGSDVLAPARE 117 (127)
T ss_dssp HHH-HCC--S---TT-EEEES-SS--GGGGHHHHH
T ss_pred HHH-HHhccC--CCCcEEEECCCCChHHhhhhHHH
Confidence 999 776 6 78999999999888888776554
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.57 E-value=5.1e-14 Score=124.69 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=113.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|+|+|||+|+||+++++.|.++|+ +|.+.+| .+++.+...+.++. ...++.++++.+||||++||...+.++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v 76 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDV 76 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhH
Confidence 4789999999999999999999995 8888855 55556655554444 566889999999999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCC-----------------HHHHHHhccccCCCCCCCCeEEEEcCCchhhh-----c
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVD-----------------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-----G 198 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~-----------------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-----~ 198 (341)
+.++ +..+ .+++||++++.+. .+.+++.++ +.+ +|+.+.+.+... .
T Consensus 77 ~~~l-~~~~---~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp-------~ak-VVkAFn~i~a~~l~~~~~ 144 (211)
T COG2085 77 LAEL-RDAL---GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLP-------GAK-VVKAFNTIPAAVLADLAK 144 (211)
T ss_pred HHHH-HHHh---CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCC-------Ccc-hhhhhcccCHHHhccCCC
Confidence 9999 8877 4899999988742 134555665 457 888887766543 1
Q ss_pred --CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE
Q psy316 199 --KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 199 --~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~ 231 (341)
....+++++++ . +..+.|.+|.+.+|...
T Consensus 145 ~~~~~~v~vagDD--~--~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 145 PGGRRDVLVAGDD--A--EAKAVVAELAEDIGFRP 175 (211)
T ss_pred cCCceeEEEecCc--H--HHHHHHHHHHHhcCcce
Confidence 12344555542 4 78999999999999753
No 65
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.55 E-value=2.6e-13 Score=129.15 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=121.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.|||+|||+|+||++|++.|.++|+ +|++|+|++. .+..++++++|+||+|+|..++++++++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH----RVRVWSRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVAEQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----EEEEEeCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHHHH
Confidence 4689999999999999999999994 9999999753 2567788899999999999999999998
Q ss_pred hhhcc-cccCCCcEEEEecCCCCHHH-------HHHhccccCCCCCCCCeEEE-EcCCchhhhcCc--eEEEEeCCCCCc
Q psy316 144 LVNDK-VTLNSSRCIISMLVGVDLET-------LKKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKG--ITGMCHDVHLDK 212 (341)
Q Consensus 144 i~~~~-l~~~~~~iIVs~~agi~~~~-------l~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g--~~~l~~~~~~~~ 212 (341)
+ .++ + .++++||++++|++.+. ++..+. +.+ ++. ..|+.+..+..+ ...+..+. +.
T Consensus 67 l-~~~~~--~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-------~~~-v~~i~gp~~a~ei~~~~~~~~~~ag~--~~ 133 (308)
T PRK14619 67 V-QALNL--PPETIIVTATKGLDPETTRTPSQIWQAAFP-------NHP-VVVLSGPNLSKEIQQGLPAATVVASR--DL 133 (308)
T ss_pred H-HHhcC--CCCcEEEEeCCcccCCCCcCHHHHHHHHcC-------CCc-eEEEECCCcHHHHhcCCCeEEEEEeC--CH
Confidence 8 764 6 67889999888776432 222333 345 543 235555444333 22333332 24
Q ss_pred cHHHHHHHHHHHHhcCCeEEcCCCchh--------HHHHH-hc-------chHHHHHHHHHHHHHH---HHHcCCCHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVEIIPESMMN--------SFGAI-AG-------SGCAYLFLVMDAMADG---AVKQGIPRDMA 273 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~~v~e~~~d--------~~~al-~g-------~gpa~~~~~~eal~ea---~~~~Gl~~~~a 273 (341)
+..+.++++|+..|..++.+.+... .+.++ +| ..+.....+..++.|. +.+.|++++.+
T Consensus 134 --~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 134 --AAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred --HHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 7889999999999977664333111 11111 11 0122334455555554 45889998888
Q ss_pred HHH
Q psy316 274 LRI 276 (341)
Q Consensus 274 ~~l 276 (341)
.++
T Consensus 212 ~~~ 214 (308)
T PRK14619 212 YGL 214 (308)
T ss_pred ccc
Confidence 764
No 66
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.55 E-value=7.5e-13 Score=124.07 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=143.1
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChhhhh-----hcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSERFKL-----HWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e~~~-----~l~~~~g~-~~~s~ 118 (341)
|||.+.|+||- |.+||++|+++|+ +|++|||++++.+ .+.+ .|+ .+.+.
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~Drnrsa~e~e~~e~Lae-aGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLAEPNREFMSDDLWKKVED-AGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEEeCChhhhhhhhhHHHHH-CCCeecCCH
Confidence 57888888873 7899999999995 9999999876543 4555 588 77789
Q ss_pred HHHhhcCCEEEEeeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCC-CCCCCCeEEEEcCC-chh
Q psy316 119 HRIIKEAEYVFLAMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVP-NPNDAPTIIRVMPN-TAM 195 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~-~~~~~~~vvr~mpn-~p~ 195 (341)
.++++++|+||+|+|. .++++|+.++ .+.+ +++++||++ ++++++.+.+.|..... .+.+.. |..++|. .|.
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GL-aa~L--~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~-v~s~HP~~vP~ 150 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTI-IEHV--PENAVICNT-CTVSPVVLYYSLEKILRLKRTDVG-ISSMHPAAVPG 150 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHH-HhcC--CCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccC-eeccCCCCCCC
Confidence 9999999999999996 5688998888 7888 889999987 66787776655542110 113344 5555553 333
Q ss_pred hhcCceEEEEeC-----CCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHH---HH-HH
Q psy316 196 KYGKGITGMCHD-----VHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMAD---GA-VK 265 (341)
Q Consensus 196 ~v~~g~~~l~~~-----~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~e---a~-~~ 265 (341)
.-+++..++... .-.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+...+ ....++.+ .+ .-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~A~e--e~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta---~~~~gil~y~~~~t~i 225 (341)
T TIGR01724 151 TPQHGHYVIGGKPTAGKEMATE--EQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA---VALAGVLDYYYVGTQI 225 (341)
T ss_pred CCCCceeeeccccccccccCCH--HHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334544333211 11355 8999999999999876 45677766555544332222 22222222 23 35
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 266 QGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 266 ~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.|-|.+-+.+.+..++.-.+.+++.
T Consensus 226 ~~ap~~~~~~~~~~~l~~~a~l~~~ 250 (341)
T TIGR01724 226 INAPKEMIEKQILMTLQTMASLVET 250 (341)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887777777765
No 67
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=4.1e-13 Score=129.21 Aligned_cols=147 Identities=14% Similarity=0.233 Sum_probs=102.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c----------------ccChHHHhhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A----------------LNDNHRIIKEA 125 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~----------------~~s~~e~~~~a 125 (341)
|+|||+|||+|.||+.++..|.++|+ +|++++|++. .+.+++ .|. . ..+..+.+..+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGA----DVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCC----cEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccChhhccCC
Confidence 67899999999999999999999994 9999999753 344433 222 1 12223567799
Q ss_pred CEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEE---------cCCchh
Q psy316 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRV---------MPNTAM 195 (341)
Q Consensus 126 DvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~---------mpn~p~ 195 (341)
|+||+|||+.++.++++++ .+.+ .++++|+++.+|+. .+.+++.++ . .. ++.. -|....
T Consensus 75 D~vil~vk~~~~~~~~~~l-~~~~--~~~~iii~~~nG~~~~~~l~~~~~------~-~~-~~~g~~~~~~~~~~pg~~~ 143 (341)
T PRK08229 75 DLVLVTVKSAATADAAAAL-AGHA--RPGAVVVSFQNGVRNADVLRAALP------G-AT-VLAGMVPFNVISRGPGAFH 143 (341)
T ss_pred CEEEEEecCcchHHHHHHH-HhhC--CCCCEEEEeCCCCCcHHHHHHhCC------C-Cc-EEEEEEEEEEEecCCceEE
Confidence 9999999999999999999 8888 78899999999988 466777776 2 22 2221 112111
Q ss_pred hhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 196 KYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 196 ~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
....|...+ +. . +..+.+.++|+..|..+.+
T Consensus 144 ~~~~g~l~~--~~---~--~~~~~~~~~l~~~g~~~~~ 174 (341)
T PRK08229 144 QGTSGALAI--EA---S--PALRPFAAAFARAGLPLVT 174 (341)
T ss_pred ecCCCceEe--cC---C--chHHHHHHHHHhcCCCcee
Confidence 122333222 22 1 4467889999999976555
No 68
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.51 E-value=7.4e-13 Score=130.87 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=125.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------CC-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------MD-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------~g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|.||..+|..|.++|+ +|++||+++++.+.+++. .| + .+.+..+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh
Confidence 589999999999999999999995 999999999998877641 13 3 45567778899
Q ss_pred CCEEEEeeChH----------HHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHH-HhccccCCC--CCCCCeEEE
Q psy316 125 AEYVFLAMKPQ----------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLK-KKLSVLVPN--PNDAPTIIR 188 (341)
Q Consensus 125 aDvIilaV~~~----------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~-~~l~~~~~~--~~~~~~vvr 188 (341)
+|+||+|||.. .+.+++.++ .+.+ +++++||.. +++++. .+. ..+....+. ..+.+ +.
T Consensus 77 advvii~vpt~~~~~~~~d~~~v~~~~~~i-~~~l--~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~--v~ 150 (411)
T TIGR03026 77 ADVIIICVPTPLKEDGSPDLSYVESAAETI-AKHL--RKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFY--LA 150 (411)
T ss_pred CCEEEEEeCCCCCCCCCcChHHHHHHHHHH-HHhc--CCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCce--EE
Confidence 99999999843 478888888 8888 788888865 455432 332 222210000 01112 22
Q ss_pred EcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHHHHHHHH
Q psy316 189 VMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAYLFLVMD 257 (341)
Q Consensus 189 ~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~~~~~~e 257 (341)
..|. ....|. .++..+ ++ +..+.++++|+.++ .+++++...-..++.+.. +.|.+..+.
T Consensus 151 ~~Pe---~~~~G~~~~~~~~~~~iv~G~---~~--~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia 220 (411)
T TIGR03026 151 YNPE---FLREGNAVHDLLNPDRIVGGE---TE--EAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAE--NTFRAVKIA 220 (411)
T ss_pred ECCC---cCCCCChhhhhcCCCEEEEeC---CH--HHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHH--HHHHHHHHH
Confidence 3332 222232 344443 34 78899999999996 345555433333444432 345444444
Q ss_pred HHHH---HHHHcCCCHHHHHHHHHH
Q psy316 258 AMAD---GAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 258 al~e---a~~~~Gl~~~~a~~lv~~ 279 (341)
.+.| .+.+.|++.++..+++..
T Consensus 221 ~~nE~~~la~~~GiD~~~v~~~~~~ 245 (411)
T TIGR03026 221 FANELARICEALGIDVYEVIEAAGT 245 (411)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 4444 356899999988877653
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.50 E-value=7e-14 Score=120.29 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=92.8
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDvIila 131 (341)
||+|||+|+||+++|..|.++| ++|++|.|+++..+.+.+.. ++ .+.|.+++++++|+||++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g----~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG----HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT----EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC----CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence 7999999999999999999999 59999999998877665421 23 567788999999999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-------HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG 200 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g 200 (341)
||.+.++++++++ ++++ +++++||++..|+. .+.+++.++ . .++.+-..|+.+.++..+
T Consensus 77 vPs~~~~~~~~~l-~~~l--~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~------~-~~~~~lsGP~~A~Ei~~~ 142 (157)
T PF01210_consen 77 VPSQAHREVLEQL-APYL--KKGQIIISATKGFEPGTLLLLSEVIEEILP------I-PRIAVLSGPSFAEEIAEG 142 (157)
T ss_dssp S-GGGHHHHHHHH-TTTS--HTT-EEEETS-SEETTEEEEHHHHHHHHHS------S-CGEEEEESS--HHHHHTT
T ss_pred ccHHHHHHHHHHH-hhcc--CCCCEEEEecCCcccCCCccHHHHHHHHhh------h-cceEEeeCccHHHHHHcC
Confidence 9999999999999 9999 88999999999983 245566676 2 222556678988888766
No 70
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.50 E-value=2.9e-12 Score=124.21 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=112.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC---CCeEEEEcCChh-----hhhhcCcC-----C--------Cc-cccChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCI---PAQIIASAPSER-----FKLHWPEP-----M--------DF-ALNDNHRI 121 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e-----~~~~l~~~-----~--------g~-~~~s~~e~ 121 (341)
++||+|||+|+||++||..|.++|..+ .++|.+|.|+++ ..+.+.+. + ++ .++++.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999999887211 258999999875 24444321 1 23 45677888
Q ss_pred hhcCCEEEEeeChHHHHHHHHHhhhc--ccccCCCcEEEEecCCCCHHH---------HHHhccccCCCCCCCCeEEEEc
Q psy316 122 IKEAEYVFLAMKPQYLDSAIQGLVND--KVTLNSSRCIISMLVGVDLET---------LKKKLSVLVPNPNDAPTIIRVM 190 (341)
Q Consensus 122 ~~~aDvIilaV~~~~v~~vl~~i~~~--~l~~~~~~iIVs~~agi~~~~---------l~~~l~~~~~~~~~~~~vvr~m 190 (341)
++++|+||++||++.++++++++ ++ .+ .++++|||+++|+..++ +++.++ .++.+-..
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l-~~~~~l--~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~--------~~~~~LsG 159 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQI-KENNNL--KKHARAISLTKGIIVENGKPVLCSDVIEEELG--------IPCCALSG 159 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHh-cccccc--CCCCEEEEEeCCcccCCCCcccHHHHHHHHhC--------CCeEEEEC
Confidence 99999999999999999999999 88 77 66779999999987532 233333 24134567
Q ss_pred CCchhhhcCce-EEEE-eCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 191 PNTAMKYGKGI-TGMC-HDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 191 pn~p~~v~~g~-~~l~-~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
||++.++..|. +.++ .+. +. +....++++|+.=-..++.+++
T Consensus 160 Ps~A~Eva~~~pt~~vias~--~~--~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 160 ANVANDVAREEFSEATIGCE--DK--DDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred CCHHHHHHcCCCcEEEEEeC--CH--HHHHHHHHHhCCCcEEEEEcCC
Confidence 99998887763 2222 222 23 6777888899764445555544
No 71
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.49 E-value=1.5e-12 Score=123.29 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=105.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------------cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------------ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------------~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.||+.++..|.++|+ +|++++| +++.+.+++ .|+ ...+..+....+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~~r-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFLVR-PKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEEec-HHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 589999999999999999999984 9999999 777776655 232 12344455578999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEE---cCC---chhhh---cCc
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRV---MPN---TAMKY---GKG 200 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~---mpn---~p~~v---~~g 200 (341)
|||+.+++++++++ ++.+ .++++||++.+|+. .+.+.+.++ . .+ ++.. ++. .|..+ +.+
T Consensus 75 avk~~~~~~~~~~l-~~~~--~~~~~ii~~~nG~~~~~~l~~~~~------~-~~-v~~g~~~~~~~~~~~g~v~~~~~~ 143 (305)
T PRK12921 75 AVKAYQLDAAIPDL-KPLV--GEDTVIIPLQNGIGQLEQLEPYFG------R-ER-VLGGVVFISAQLNGDGVVVQRADH 143 (305)
T ss_pred EecccCHHHHHHHH-Hhhc--CCCCEEEEeeCCCChHHHHHHhCC------c-cc-EEEEEEEEEEEECCCeEEEEcCCC
Confidence 99999999999999 8888 77889999999997 567777776 2 23 3321 111 11111 112
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 201 ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
...+...+.... +..+.+.++|+..|..+++.++
T Consensus 144 ~~~iG~~~~~~~--~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 144 RLTFGEIPGQRS--ERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred cEEEcCCCCCcC--HHHHHHHHHHHhCCCCceecHH
Confidence 222221112223 5667788889988877666543
No 72
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.48 E-value=3.7e-12 Score=128.89 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=130.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~~ 119 (341)
.||+|||+|.||..||..|+.+|+ +|++||++++.+++. .+ .| + .+.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~----~V~l~D~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH----TVLLYDARAGAAAAARDGIAARLAKLVE-KGKLTAEQADAALARLRPVEALA 82 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCHH
Confidence 579999999999999999999995 999999999987763 22 13 3 345554
Q ss_pred HHhhcCCEEEEeeCh-HHHHHH-HHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP-QYLDSA-IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~-~~v~~v-l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+ +.+||+||.||+. ..++.. +.++ ...+ +++.++.|.+++++++.+++.+. ...+ ++..+.-.|+.+
T Consensus 83 ~-~~~aDlViEav~E~~~vK~~vf~~l-~~~~--~~~ailasntStl~i~~la~~~~------~p~r-~~G~hff~Pa~v 151 (507)
T PRK08268 83 D-LADCDLVVEAIVERLDVKQALFAQL-EAIV--SPDCILATNTSSLSITAIAAALK------HPER-VAGLHFFNPVPL 151 (507)
T ss_pred H-hCCCCEEEEcCcccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEeecCCccc
Confidence 4 6699999999985 456654 4667 6666 77888888889999998888776 3456 666665444444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC-CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE-SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALR 275 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e-~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~ 275 (341)
. ..+.++.++..++ +.++.+.++++.+|+.. ++.+ ..+ + .+ -.+...+.|++.- +.+.|.++++..+
T Consensus 152 ~-~LvEvv~g~~Ts~--~~~~~~~~l~~~lgk~pv~v~d~pGf--i----~N-rll~~~~~Ea~~l-~~~g~~~~~~iD~ 220 (507)
T PRK08268 152 M-KLVEVVSGLATDP--AVADALYALARAWGKTPVRAKDTPGF--I----VN-RAARPYYTEALRV-LEEGVADPATIDA 220 (507)
T ss_pred C-eeEEEeCCCCCCH--HHHHHHHHHHHHcCCceEEecCCCCh--H----HH-HHHHHHHHHHHHH-HHcCCCCHHHHHH
Confidence 3 3556677766777 99999999999999864 4543 221 0 00 0111233333332 2345577777777
Q ss_pred HHHHHH
Q psy316 276 IGAQLL 281 (341)
Q Consensus 276 lv~~~~ 281 (341)
++...+
T Consensus 221 al~~~~ 226 (507)
T PRK08268 221 ILREAA 226 (507)
T ss_pred HHHhcC
Confidence 665433
No 73
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.48 E-value=8.8e-12 Score=124.27 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc-cccChHHHhhc---CCEEEEeeCh-HHHHHHHHHhh
Q psy316 75 MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF-ALNDNHRIIKE---AEYVFLAMKP-QYLDSAIQGLV 145 (341)
Q Consensus 75 mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~-~~~s~~e~~~~---aDvIilaV~~-~~v~~vl~~i~ 145 (341)
||..|+++|+++|+ +|.+|||++++.+.+.++. |+ .+.+++++++. +|+||+|||. ..+++|+.++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l- 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL- 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH-
Confidence 89999999999995 9999999999999887632 46 67888988874 8999999996 6889999999
Q ss_pred hcccccCCCcEEEEecCCCCHHHH--HHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 146 NDKVTLNSSRCIISMLVGVDLETL--KKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 146 ~~~l~~~~~~iIVs~~agi~~~~l--~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
.+.+ .++.+||++.+....+.. .+.+.. .+.. ++.+ +...+.....|.+++..|+ + +.++.+++
T Consensus 76 ~~~l--~~GdiiID~gn~~~~~t~~~~~~l~~-----~Gi~-fvdapVSGG~~gA~~G~siM~GG~---~--~a~~~~~p 142 (459)
T PRK09287 76 LPLL--EKGDIIIDGGNSNYKDTIRREKELAE-----KGIH-FIGMGVSGGEEGALHGPSIMPGGQ---K--EAYELVAP 142 (459)
T ss_pred HhcC--CCCCEEEECCCCCHHHHHHHHHHHHh-----cCCe-EEecCCCCCHHHHhcCCEEEEeCC---H--HHHHHHHH
Confidence 8888 889999998655443332 233321 2333 3322 1223334456777676664 4 88999999
Q ss_pred HHHhcCCe--------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q psy316 223 IMEQGGIV--------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---V-KQGIPRDMALRIGA 278 (341)
Q Consensus 223 ll~~lG~~--------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~-~~Gl~~~~a~~lv~ 278 (341)
+|+.++.. .++++..-..+..+.. +...+..++++.|+. . +.|++.++..+++.
T Consensus 143 iL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvh--N~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 143 ILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVH--NGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHhhhhcCCCCceeeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999864 4677655555555554 345566677777753 3 47999999888884
No 74
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.47 E-value=4.3e-12 Score=120.64 Aligned_cols=187 Identities=13% Similarity=0.174 Sum_probs=123.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-----------cChHHHhhcCCEEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-----------NDNHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-----------~s~~e~~~~aDvIil 130 (341)
|.|||+|||+|.||+.++..|.++|. +|+++.|++++++.++++-|+ .. ....+.....|+||+
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGL----PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCC----CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 56899999999999999999999984 899999988888877653232 11 011122357899999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEcC------Cchhh---hcCc
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVMP------NTAMK---YGKG 200 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~mp------n~p~~---v~~g 200 (341)
|||..++.++++.+ ++.+ .++++||++.||+.. +.+++.++ . .+ ++.... ..|.. .+.|
T Consensus 77 ~vK~~~~~~al~~l-~~~l--~~~t~vv~lQNGv~~~e~l~~~~~------~-~~-v~~g~~~~ga~~~~pg~v~~~~~g 145 (305)
T PRK05708 77 ACKAYDAEPAVASL-AHRL--APGAELLLLQNGLGSQDAVAARVP------H-AR-CIFASSTEGAFRDGDWRVVFAGHG 145 (305)
T ss_pred ECCHHhHHHHHHHH-HhhC--CCCCEEEEEeCCCCCHHHHHHhCC------C-Cc-EEEEEeeeceecCCCCEEEEeceE
Confidence 99999999999999 9999 889999999999995 56777776 2 23 332111 11221 1223
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH-------HHHHHHHHHH
Q psy316 201 ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA-------YLFLVMDAMA 260 (341)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa-------~~~~~~eal~ 260 (341)
.+. .|.. .. +..+.+.++|+..|....++++ .++.++++.++... .+..++..+.
T Consensus 146 ~~~--~G~~-~~--~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~ 220 (305)
T PRK05708 146 FTW--LGDP-RN--PTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELS 220 (305)
T ss_pred EEE--EcCC-CC--cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHH
Confidence 322 3322 22 4456678888888876666443 35667777665322 2333333344
Q ss_pred HHHHHcCCC
Q psy316 261 DGAVKQGIP 269 (341)
Q Consensus 261 ea~~~~Gl~ 269 (341)
+.+.+.|++
T Consensus 221 ~va~a~G~~ 229 (305)
T PRK05708 221 ELLRRCGQP 229 (305)
T ss_pred HHHHHcCCC
Confidence 445677775
No 75
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.47 E-value=1.1e-11 Score=119.44 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=110.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCC----CCeEEEEcC-----ChhhhhhcCcC-----C--------Cc-cccChHHHh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCI----PAQIIASAP-----SERFKLHWPEP-----M--------DF-ALNDNHRII 122 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~----~~~V~v~~r-----~~e~~~~l~~~-----~--------g~-~~~s~~e~~ 122 (341)
||+|||+|+||++||..|..+|..+ .++|++|.| +++-.+.+.+. + ++ .+.+.++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999887111 159999998 44443333221 1 13 446778889
Q ss_pred hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH--H-------HHHhccccCCCCCCCCeEEEEcCCc
Q psy316 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE--T-------LKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~--~-------l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
+++|+||++||++.++++++++ ++++ .+++++||++.|+..+ . +++.++ .++.+-..||.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l-~~~l--~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~--------~~~~~lsGP~~ 149 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQL-KGHV--KPNARAISCIKGLEVSKDGVKLLSDIIEEELG--------IPCGVLSGANL 149 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHH-Hhhc--CCCCEEEEEeCCcccCCCcCccHHHHHHHHhC--------CCeEEeeCcch
Confidence 9999999999999999999999 9998 7888999999998865 2 233333 23134567999
Q ss_pred hhhhcCce-E-EEEeCCCCC--ccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 194 AMKYGKGI-T-GMCHDVHLD--KESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 194 p~~v~~g~-~-~l~~~~~~~--~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.++..|. + ....+.+.+ . +....++++|+.=-..++.+.+
T Consensus 150 A~Eva~~~pt~~~ia~~~~~~~~--~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 150 ANEVAKEKFSETTVGYRDPADFD--VDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred HHHHHcCCCceEEEEeCCCcchH--HHHHHHHHHhCCCCEEEEEcCC
Confidence 98887764 2 222222211 3 6677888888754444455544
No 76
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.46 E-value=6.9e-12 Score=126.64 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=114.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~~ 119 (341)
+||+|||+|.||..||..|+++|+ +|++|||+++.+++. .+ .| + .+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~----~V~l~d~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH----QVLLYDIRAEALARAIAGIEARLNSLVT-KGKLTAEECERTLKRLIPVTDLH 80 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhccEEeCCHH
Confidence 579999999999999999999995 999999999887642 22 12 2 345554
Q ss_pred HHhhcCCEEEEeeCh-HHHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP-QYLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~-~~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
.+.+||+||.|++. .+++. ++.++ ...+ +++.+|.|.++++++..+.+.+. ...+ ++..+.-.|..+
T Consensus 81 -~l~~aDlVIEav~E~~~vK~~vf~~l-~~~~--~~~~IlasnTStl~i~~iA~~~~------~p~r-~~G~HFf~Papv 149 (503)
T TIGR02279 81 -ALADAGLVIEAIVENLEVKKALFAQL-EELC--PADTIIASNTSSLSITAIAAGLA------RPER-VAGLHFFNPAPV 149 (503)
T ss_pred -HhCCCCEEEEcCcCcHHHHHHHHHHH-HhhC--CCCeEEEECCCCCCHHHHHHhcC------cccc-eEEEeccCcccc
Confidence 46799999999985 45554 55667 7777 78888888889999998888776 3455 666665444444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
. ....++.++..++ +.++.+.++++.+|+.. ++.
T Consensus 150 ~-~LvEvv~g~~Ts~--e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 150 M-ALVEVVSGLATAA--EVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred C-ceEEEeCCCCCCH--HHHHHHHHHHHHcCCeeeEeC
Confidence 3 3566777777777 99999999999999865 454
No 77
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.45 E-value=1.2e-11 Score=118.00 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C---------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M---------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~---------g~-~~~s~~e~~~~ 124 (341)
+||+|||+|.||..||..++.+|+ +|++||++++..+.+.+. . .+ .+.+.++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~----~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL----DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 589999999999999999999995 999999998765542210 1 12 34567788899
Q ss_pred CCEEEEeeChH-HHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceE
Q psy316 125 AEYVFLAMKPQ-YLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGIT 202 (341)
Q Consensus 125 aDvIilaV~~~-~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~ 202 (341)
||+|+.|+|.. +++ +++.++ ...+ +++.+|.|.++++++..+.+.+. ...+ ++..+|-.|..... ..
T Consensus 84 aDlViEavpE~l~vK~~lf~~l-~~~~--~~~aIlaSnTS~l~~s~la~~~~------~p~R-~~g~HffnP~~~~p-LV 152 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERI-SRAA--KPDAIIASSTSGLLPTDFYARAT------HPER-CVVGHPFNPVYLLP-LV 152 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHH-HHhC--CCCeEEEECCCccCHHHHHHhcC------Cccc-EEEEecCCccccCc-eE
Confidence 99999999853 444 566778 7777 78888888888999999988877 4567 88888765654433 33
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCe-EEc
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIV-EII 233 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v 233 (341)
-+++++..++ +..+.+..+++.+|+. +.+
T Consensus 153 EVv~g~~T~~--e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 153 EVLGGERTAP--EAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred EEeCCCCCCH--HHHHHHHHHHHHcCCEeEec
Confidence 3567777777 9999999999999975 455
No 78
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.43 E-value=1.8e-12 Score=113.98 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=105.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C-------------Cc-cccChHHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M-------------DF-ALNDNHRI 121 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~-------------g~-~~~s~~e~ 121 (341)
||+|||+|.||..||..++.+|+ +|.++|++++.++...+. . .+ ...+.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH
Confidence 69999999999999999999995 999999999876543221 0 12 34566666
Q ss_pred hhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
. ++|+||-|++. ..-++++.++ ...+ .++.+|.|.+++++++.|...+. ...+ ++.+++-.|.....
T Consensus 77 ~-~adlViEai~E~l~~K~~~~~~l-~~~~--~~~~ilasnTSsl~i~~la~~~~------~p~R-~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 77 V-DADLVIEAIPEDLELKQELFAEL-DEIC--PPDTILASNTSSLSISELAAALS------RPER-FIGMHFFNPPHLMP 145 (180)
T ss_dssp C-TESEEEE-S-SSHHHHHHHHHHH-HCCS---TTSEEEE--SSS-HHHHHTTSS------TGGG-EEEEEE-SSTTT--
T ss_pred h-hhheehhhccccHHHHHHHHHHH-HHHh--CCCceEEecCCCCCHHHHHhccC------cCce-EEEEecccccccCc
Confidence 6 99999999984 3455788888 8888 89999999999999999998887 4567 88877655654322
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
..=+.+++..++ +..+.+..+++.+|+...
T Consensus 146 -lVEvv~~~~T~~--~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 146 -LVEVVPGPKTSP--ETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp -EEEEEE-TTS-H--HHHHHHHHHHHHTT-EEE
T ss_pred -eEEEeCCCCCCH--HHHHHHHHHHHHCCCEEE
Confidence 333566777777 999999999999998643
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.43 E-value=8.3e-12 Score=123.52 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=120.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHH---------------hhcCCE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRI---------------IKEAEY 127 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~---------------~~~aDv 127 (341)
|||+|||+|.||..+|..|.++|+ +|++||+++++.+.++.. .. . -....+. +++||+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~----~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDv 78 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK----QVIGVDINQHAVDTINRG-EIHIVEPDLDMVVKTAVEGGYLRATTTPEPADA 78 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC----EEEEEeCCHHHHHHHHCC-CCCcCCCCHHHHHHHHhhcCceeeecccccCCE
Confidence 789999999999999999999995 999999999999886531 11 1 1111111 347999
Q ss_pred EEEeeCh----------HHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcccc-----CC--CCCCCCeEE
Q psy316 128 VFLAMKP----------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVL-----VP--NPNDAPTII 187 (341)
Q Consensus 128 IilaV~~----------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~-----~~--~~~~~~~vv 187 (341)
||+|||. ..+.++++++ .+++ +++++||.. ++++ .+.+...+... .+ .+.+..+.+
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i-~~~l--~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v 154 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSI-APVL--KKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQAGEQADINI 154 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHH-HHhC--CCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence 9999996 5788888888 8888 888888765 3333 33443322210 00 000011011
Q ss_pred EEcC-----CchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHH
Q psy316 188 RVMP-----NTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMAD 261 (341)
Q Consensus 188 r~mp-----n~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~e 261 (341)
-..| ........-...++.+. ++ +..+.++++++.++.. +.++...-..++.++. +.|.+.-+..+.|
T Consensus 155 ~~~PE~~~~G~~~~~~~~~~~vvgG~--~~--~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia~~nE 228 (415)
T PRK11064 155 AYCPERVLPGQVMVELIKNDRVIGGM--TP--VCSARASELYKIFLEGECVVTNSRTAEMCKLTE--NSFRDVNIAFANE 228 (415)
T ss_pred EECCCccCCCChhhhhcCCCEEEEeC--CH--HHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 2222 21111111122344442 34 7889999999999864 3445433334444433 3455554444444
Q ss_pred ---HHHHcCCCHHHHHHHHH
Q psy316 262 ---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 262 ---a~~~~Gl~~~~a~~lv~ 278 (341)
.+.+.|+|..+..+.+.
T Consensus 229 ~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 229 LSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHhCCCHHHHHHHhc
Confidence 45689999988776654
No 80
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.41 E-value=2e-11 Score=116.45 Aligned_cols=169 Identities=11% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------------cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------------ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------------~~~s~~e~~~~aDvIi 129 (341)
.|||+|||+|.||+.+|..|.++|+ +|+++.|++. +.+.+ .|+ ...+..+....+|+||
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~~r~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF----DVHFLLRSDY--EAVRE-NGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCH--HHHHh-CCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 4789999999999999999999984 9999999763 22322 121 0112233466899999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEc------CCchhh---hcC
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVM------PNTAMK---YGK 199 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~m------pn~p~~---v~~ 199 (341)
+|||..++.+++..+ .+.+ .++.+|+++.+|+.. +.+.+.++. .+ ++... ...|.. .+.
T Consensus 78 lavK~~~~~~~~~~l-~~~~--~~~~~iv~lqNG~~~~e~l~~~~~~-------~~-v~~g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 78 VGLKTTANALLAPLI-PQVA--APDAKVLLLQNGLGVEEQLREILPA-------EH-LLGGLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred EEecCCChHhHHHHH-hhhc--CCCCEEEEecCCCCcHHHHHHHCCC-------Cc-EEEEeeeEeEecCCCeEEEECCC
Confidence 999999999999998 8888 788899999999985 667777772 33 33321 112221 123
Q ss_pred ceEEEEeCCCCC-c--cHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH
Q psy316 200 GITGMCHDVHLD-K--ESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA 250 (341)
Q Consensus 200 g~~~l~~~~~~~-~--~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa 250 (341)
|.+.+...+... + ..+....+..+|+..|..+.++++ .++.++++.++...
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 333333222111 0 015566788899999987666543 45677888876443
No 81
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.6e-10 Score=103.56 Aligned_cols=226 Identities=14% Similarity=0.142 Sum_probs=144.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh---hcCCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII---KEAEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~---~~aDvIilaV~~~-~v~~ 139 (341)
|+||.||+|+||..|+++|++.|+ ++++||+|++..+.++. .|+ ...++.+.+ ...-+|.++||.. .+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~yD~n~~av~~~~~-~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGYDVNQTAVEELKD-EGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEEcCCHHHHHHHHh-cCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 689999999999999999999995 99999999999999988 477 666666665 4678999999986 7889
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHH--hccccCCCCCCCCeEEEEcCC-chhhhcCceEEEEeCCCCCccHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKK--KLSVLVPNPNDAPTIIRVMPN-TAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~--~l~~~~~~~~~~~~vvr~mpn-~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
+++++ .+.| .++.+||+--+..=-+.+++ .+.. ++-. ++.+-.. .+.-...|...+..++ + +.
T Consensus 76 vi~~l-a~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~-----kgi~-flD~GTSGG~~G~~~G~~lMiGG~---~--~a 141 (300)
T COG1023 76 VIDDL-APLL--SAGDIVIDGGNSNYKDSLRRAKLLAE-----KGIH-FLDVGTSGGVWGAERGYCLMIGGD---E--EA 141 (300)
T ss_pred HHHHH-Hhhc--CCCCEEEECCccchHHHHHHHHHHHh-----cCCe-EEeccCCCCchhhhcCceEEecCc---H--HH
Confidence 99999 9999 89999997544332344433 2221 3334 4444322 1222346778888775 3 88
Q ss_pred HHHHHHHHHhcCC-e-E--EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHH-HHHHHHH
Q psy316 217 LNMAIKIMEQGGI-V-E--IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAV-----KQGIPRDMALRIGAQ-LLKGSGQ 286 (341)
Q Consensus 217 ~~~v~~ll~~lG~-~-~--~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~-----~~Gl~~~~a~~lv~~-~~~gs~~ 286 (341)
++.++++|+.+.. . - ++++..-..+..+.-+| .=|.+|++++|... ...+|.++.-++-.+ ++.+| .
T Consensus 142 ~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNG--IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrS-W 218 (300)
T COG1023 142 VERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNG--IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRS-W 218 (300)
T ss_pred HHHHHHHHHhhCcCcCccccccCCCcchhHHHHhcc--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHH-H
Confidence 9999999998764 2 1 23443323333333322 23456777777532 234555554444433 23333 2
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.- .++..+ .+-+.+++...|.+.|
T Consensus 219 LldL-t~~Af~-~d~~L~q~~g~v~dSG 244 (300)
T COG1023 219 LLDL-TAEAFK-KDPDLDQISGRVSDSG 244 (300)
T ss_pred HHHH-HHHHHh-hCCCHHHhcCeeccCC
Confidence 2210 000001 3336777777777765
No 82
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.37 E-value=6.3e-11 Score=111.67 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=113.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~~g-------------~-~~~s~~ 119 (341)
.||+|||+|.||..||..++.+|+ +|++||++++.+++ +.++ | + .+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~~- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV----DVLVFETTEELATAGRNRIEKSLERAVSR-GKLTERERDAALARLRFTTDL- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHHHHHHHhc-ccCChhhHHHHHhCeEeeCCH-
Confidence 489999999999999999999995 99999999998776 3321 2 1 23444
Q ss_pred HHhhcCCEEEEeeChH-HHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ-YLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~-~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||.|++.+ .++. ++..+ ...+ .+++.+++|.++++++..+...+. ...+ ++..++-.|...
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l-~~~~-~~~~~il~snTS~~~~~~la~~~~------~~~r-~~g~hf~~P~~~ 150 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAEL-DKVV-TDPDAVLASNTSSIPIMKLAAATK------RPGR-VLGLHFFNPVPV 150 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHH-HHhh-CCCCcEEEECCCCCCHHHHHhhcC------CCcc-EEEEecCCCccc
Confidence 5689999999999853 4554 44555 5543 036889999999999999988776 3466 777777666555
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHH-hcCCeE-EcCC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIME-QGGIVE-IIPE 235 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~-~lG~~~-~v~e 235 (341)
...+ -+..+...++ +..+.+.+++. .+|+.. .+.+
T Consensus 151 ~~lv-Elv~~~~T~~--~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 151 LPLV-ELVPTLVTSE--ATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CceE-EEeCCCCCCH--HHHHHHHHHHHHhCCCCceEecC
Confidence 5444 3455666777 99999999988 599864 4543
No 83
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.32 E-value=1.2e-10 Score=110.86 Aligned_cols=166 Identities=17% Similarity=0.260 Sum_probs=116.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c------------ccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A------------LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~------------~~s~~e~~~~aDvIila 131 (341)
|||.|+|+|.||+.++..|.++| ++|+++.|++. ++++++. |+ . .....+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g----~~V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG----HDVTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC----CeEEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 68999999999999999999998 49999999765 7777763 43 1 11223455689999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEE-E--------cCCchhhhcCce
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIR-V--------MPNTAMKYGKGI 201 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr-~--------mpn~p~~v~~g~ 201 (341)
||..++.++++.+ .+.+ ++++.|+.+.+|+.. +.+.+.++. . . ++. + -|..-...+.|.
T Consensus 75 vKa~q~~~al~~l-~~~~--~~~t~vl~lqNG~g~~e~l~~~~~~------~-~-il~G~~~~~a~~~~~g~v~~~g~g~ 143 (307)
T COG1893 75 VKAYQLEEALPSL-APLL--GPNTVVLFLQNGLGHEEELRKILPK------E-T-VLGGVTTHGAVREGPGHVVHTGLGD 143 (307)
T ss_pred eccccHHHHHHHh-hhcC--CCCcEEEEEeCCCcHHHHHHHhCCc------c-e-EEEEEeeeeeEecCCceEEEecCCc
Confidence 9999999999999 9999 889999999999995 556776662 2 2 221 1 122222223344
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchH
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGC 249 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gp 249 (341)
+.+..-....+ +..+.+.++|+..|....+.++ .++.++++..|-.
T Consensus 144 ~~ig~~~~~~~--~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~ 202 (307)
T COG1893 144 TVIGELRGGRD--ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNN 202 (307)
T ss_pred EEEccCCCCch--HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCc
Confidence 33332222223 6778888889999988776543 3556666666533
No 84
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.29 E-value=2.6e-10 Score=107.77 Aligned_cols=205 Identities=14% Similarity=0.181 Sum_probs=130.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
-.++|||||+|+||.++|++|...|+ +|++++|.....+.... .|+...+..++++.||+|++++|...-..++.
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~~r~~~s~~~A~~-~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVGVRPGKSFEVAKA-DGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEEECcchhhHHHHH-cCCEECCHHHHHhcCCEEEEeCCChHHHHHHH
Confidence 35899999999999999999999995 99999876444333333 46633488999999999999999755577774
Q ss_pred -HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC-CCCcc
Q psy316 143 -GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV-HLDKE 213 (341)
Q Consensus 143 -~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~-~~~~~ 213 (341)
++ .+.+ +++.+++ .+-|..+-. ....|. .+.. |+-+-|-.|... |.|+..++.-. +.+-
T Consensus 90 ~ei-l~~M--K~GaiL~-f~hgfni~~-~~i~pp-----~~vd-v~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg- 157 (335)
T PRK13403 90 AEV-EENL--REGQMLL-FSHGFNIHF-GQINPP-----SYVD-VAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATG- 157 (335)
T ss_pred HHH-HhcC--CCCCEEE-ECCCcceec-CceeCC-----CCCe-EEEECCCCCChHHHHHHHcCCCceeEEEEEECCCC-
Confidence 56 7778 7887665 445665421 111221 4556 777777766533 66765554332 2344
Q ss_pred HHHHHHHHHHHHhcCCe--EEc--C---C---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV--EII--P---E---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~--~~v--~---e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
...+.+......+|.. -.+ + | +++..=..|+|... .++.+--+..++.|.+++.|+.=..+=+.=
T Consensus 158 -~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~----~li~~gfe~lveaGy~pe~Ayfe~~he~kl 232 (335)
T PRK13403 158 -TALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT----ALVKAGFETLTEGGYRPEIAYFECLHELKL 232 (335)
T ss_pred -cHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677778888888853 222 1 2 23333344444333 344444555678999999876543333344
Q ss_pred HHHHHH
Q psy316 284 SGQLVH 289 (341)
Q Consensus 284 s~~l~~ 289 (341)
...++.
T Consensus 233 i~dli~ 238 (335)
T PRK13403 233 IVDLMY 238 (335)
T ss_pred HHHHHH
Confidence 444443
No 85
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.28 E-value=1.2e-10 Score=115.50 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=115.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------------Cc-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------------g~-~~~s~~e~~~~aDvIi 129 (341)
|||+|||+|.||..+|..|.+ |+ +|++||+++++.+.+++.. |. .+++..+.+++||++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~----~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SR----QVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CC----EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 689999999999999999766 54 9999999999999887311 12 2344456789999999
Q ss_pred EeeC-h---------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH---H-HHHHhccccCCCC-CCCCeEEEEcCC--
Q psy316 130 LAMK-P---------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---E-TLKKKLSVLVPNP-NDAPTIIRVMPN-- 192 (341)
Q Consensus 130 laV~-~---------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~-~l~~~l~~~~~~~-~~~~~vvr~mpn-- 192 (341)
+||| | ..+....+++ .+++ +++++||.. +++++ + .++..+...-+.. .... .+..-|.
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i-~~~l--~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~-~~~~~PE~v 156 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETV-GTVL--NRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDF-YVGYSPERI 156 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHH-HHhc--CCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCe-eEeeCCCcC
Confidence 9998 3 2455555677 7788 788888865 33443 2 2222222100000 0112 2332221
Q ss_pred ---chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHHHHHHHHHH---HHHHH
Q psy316 193 ---TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAYLFLVMDAM---ADGAV 264 (341)
Q Consensus 193 ---~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~~~~~~eal---~ea~~ 264 (341)
.....-....-+..|. ++ +..+.+..+++.+. ..+.++...-...+.++. +.|.+.-+..+ ...+.
T Consensus 157 ~~G~a~~~~~~~~riv~G~--~~--~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~av~Ia~~NE~a~lae 230 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGS--TA--QIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE--NTQRDLNIALVNELAIIFN 230 (425)
T ss_pred CCCcccccccCCCeEEECC--CH--HHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 1111111112234443 24 66778888998875 234444333333444433 34544443333 44467
Q ss_pred HcCCCHHHHHHHH
Q psy316 265 KQGIPRDMALRIG 277 (341)
Q Consensus 265 ~~Gl~~~~a~~lv 277 (341)
+.|+|..+..+.+
T Consensus 231 ~~GiD~~~v~~a~ 243 (425)
T PRK15182 231 RLNIDTEAVLRAA 243 (425)
T ss_pred HhCcCHHHHHHHh
Confidence 9999999887764
No 86
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.27 E-value=5e-10 Score=109.84 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=114.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------------Cc---cccChHHHhhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------------DF---ALNDNHRIIKEAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------------g~---~~~s~~e~~~~aD 126 (341)
|||+|||+|.||..+|..|. .|+ +|+++|+++++.+.+.+.. +. ...+..+++.++|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 58999999999999996655 574 9999999999998876510 12 2334567788999
Q ss_pred EEEEeeCh-----------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCC
Q psy316 127 YVFLAMKP-----------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPN 192 (341)
Q Consensus 127 vIilaV~~-----------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn 192 (341)
+||+|||. ..++++++++ .. + +++++||.. +.+++ +.+.+.+.. .. +...|
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i-~~-~--~~g~lVV~~-STv~pgtt~~l~~~~~~-------~~--v~~~P- 140 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDV-VE-I--NPYAVMVIK-STVPVGFTAAMHKKYRT-------EN--IIFSP- 140 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHH-Hh-c--CCCCEEEEe-eecCCchHHHHHHHhhc-------Cc--EEECc-
Confidence 99999983 4678888888 66 6 678887754 34443 444444331 11 22222
Q ss_pred chhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHh--cCCeE--EcCCCchhHHHHHhcchHHHHHHHH---
Q psy316 193 TAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQ--GGIVE--IIPESMMNSFGAIAGSGCAYLFLVM--- 256 (341)
Q Consensus 193 ~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~--lG~~~--~v~e~~~d~~~al~g~gpa~~~~~~--- 256 (341)
.....|. .++.++. + +..+.+.+++.. ++..+ +++...-..++.+.. ++|.+.-+
T Consensus 141 --E~l~~G~a~~d~~~p~rvv~G~~---~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~a~~Ia~~ 211 (388)
T PRK15057 141 --EFLREGKALYDNLHPSRIVIGER---S--ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFA--NTYLAMRVAYF 211 (388)
T ss_pred --ccccCCcccccccCCCEEEEEcC---c--HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHH--HHHHHHHHHHH
Confidence 2222232 3444443 3 566777777744 45432 344333333444433 34444433
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q psy316 257 DAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 257 eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
..+...+.+.|+|..+..+.+.
T Consensus 212 NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 212 NELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred HHHHHHHHHhCcCHHHHHHHhc
Confidence 3334446789999998877653
No 87
>KOG2380|consensus
Probab=99.25 E-value=1.4e-10 Score=108.53 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=120.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v~~vl~ 142 (341)
.+|||||.|+||+-+|..|.++|+ .+++++|+. ...+++++|. ..+.+.++.. .+|+|++||....++.++.
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh----~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekila 126 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGH----GLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILA 126 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCc----eeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHH
Confidence 589999999999999999999995 999999975 4555566887 6677777654 7999999999999999998
Q ss_pred Hhhhcc-cccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEcCCc-hhhh---cCceEEEEeCCCCC---c
Q psy316 143 GLVNDK-VTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVMPNT-AMKY---GKGITGMCHDVHLD---K 212 (341)
Q Consensus 143 ~i~~~~-l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~mpn~-p~~v---~~g~~~l~~~~~~~---~ 212 (341)
.. -+. + +.+++++...+--. .+.+++++| ++.. |+.++|.. |..+ .+|...++-..... .
T Consensus 127 ty-pfqrl--rrgtlfvdvlSvKefek~lfekYLP------kdfD-IlctHpmfGPksvnh~wqglpfVydkvRig~~~~ 196 (480)
T KOG2380|consen 127 TY-PFQRL--RRGTLFVDVLSVKEFEKELFEKYLP------KDFD-ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAAS 196 (480)
T ss_pred hc-Cchhh--ccceeEeeeeecchhHHHHHHHhCc------cccc-eEeecCCcCCCcCCCccccCceEEEEeecccccc
Confidence 77 554 6 77888887644222 456788899 6788 88888864 3323 23444444221111 0
Q ss_pred cHHHHHHHHHHHHhcCCe-EEcCCCchhHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV-EIIPESMMNSFGA 243 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~a 243 (341)
..+.++.+.++|...|.. ++++-+.+|.++|
T Consensus 197 r~ercE~fleIf~cegckmVemS~eeHDkiaA 228 (480)
T KOG2380|consen 197 RPERCEFFLEIFACEGCKMVEMSYEEHDKIAA 228 (480)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEeeccccccc
Confidence 128899999999999975 5677666776655
No 88
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.20 E-value=8.3e-10 Score=116.17 Aligned_cols=152 Identities=12% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNH 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~ 119 (341)
..||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 387 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV----PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY- 387 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-
Confidence 3589999999999999999999995 999999998876532110 01 1 23343
Q ss_pred HHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||-|++. ..-++++.++ .+++ +++.+|.|.++++++..|.+.+. ...+ ++..+.-.|...
T Consensus 388 ~~~~~aDlViEav~E~l~~K~~vf~~l-~~~~--~~~~ilasNTSsl~i~~la~~~~------~p~r-~~g~Hff~P~~~ 457 (715)
T PRK11730 388 AGFERVDVVVEAVVENPKVKAAVLAEV-EQKV--REDTILASNTSTISISLLAKALK------RPEN-FCGMHFFNPVHR 457 (715)
T ss_pred HHhcCCCEEEecccCcHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------CCcc-EEEEecCCcccc
Confidence 557899999999985 3455788888 8888 88999999999999999998887 4567 888887666554
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-Ec
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-II 233 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v 233 (341)
..- .=+..++..++ +..+.+..++..+|+.. .+
T Consensus 458 ~~l-VEvv~g~~T~~--~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 458 MPL-VEVIRGEKTSD--ETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred cce-EEeeCCCCCCH--HHHHHHHHHHHHhCCceEEe
Confidence 332 33456667777 89999999999999864 44
No 89
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.20 E-value=1.1e-09 Score=97.60 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=120.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||. |.||+.+++.|.++|+ .|+ +.+||+||+|+|...+.+++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~--------------------------~~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY--------------------------IKKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE--------------------------ECCCCEEEEeCCHHHHHHHHHH
Confidence 58999988 9999999999999995 664 2468999999999999999887
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCch-hhhcC---ceEEEEeCCCCCccHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTA-MKYGK---GITGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p-~~v~~---g~~~l~~~~~~~~~~~~~~~ 219 (341)
+ . ++|+++ ++++.. +.+.. .+ ++..+|..- ..... +..+++ .+..++ +..+.
T Consensus 51 ~-------~--~~v~Dv-~SvK~~-i~~~~---------~~-~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~--~~~~~ 106 (197)
T PRK06444 51 Y-------D--NNFVEI-SSVKWP-FKKYS---------GK-IVSIHPLFGPMSYNDGVHRTVIFI-NDISRD--NYLNE 106 (197)
T ss_pred h-------C--CeEEec-cccCHH-HHHhc---------CC-EEecCCCCCCCcCcccccceEEEE-CCCCCH--HHHHH
Confidence 7 2 255654 666654 33321 24 677766422 11111 223333 344444 66788
Q ss_pred HHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy316 220 AIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHA 298 (341)
Q Consensus 220 v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~ 298 (341)
++++|+ |.. ++++.+.||..+|..++.|+.++. ++.+ .+ ..+...+++...++.+. .
T Consensus 107 ~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~-----~-- 164 (197)
T PRK06444 107 INEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEI-----K-- 164 (197)
T ss_pred HHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHH-----h--
Confidence 999998 654 456999999999999888876543 2222 11 23444555555555432 0
Q ss_pred CCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 299 AQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 299 ~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+.+|+.|.+....+.-. +.++.|.+
T Consensus 165 ~~~~p~lw~dI~~~N~~a--~~~~~~~~ 190 (197)
T PRK06444 165 EKENWEVFNDTIIYNPYT--NVINDLIE 190 (197)
T ss_pred ccCCHHHHHHHHHHCchH--HHHHHHHH
Confidence 135899999988887554 55555544
No 90
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.19 E-value=1.4e-09 Score=102.71 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=114.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDN 118 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~ 118 (341)
+.+||++||+|.||+.||..+...|+ +|+++|++++.+++..+. .| + ...+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~- 76 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY----DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD- 76 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc-
Confidence 45799999999999999999999774 999999997665432210 01 1 1222
Q ss_pred HHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
...+++||+||-+++- ..-++++.++ ..+. +++.++-|.++++++..+.+.+. ...+ ++..|+-.|..
T Consensus 77 ~~~l~~~DlVIEAv~E~levK~~vf~~l-~~~~--~~~aIlASNTSsl~it~ia~~~~------rper-~iG~HFfNP~~ 146 (307)
T COG1250 77 LAALKDADLVIEAVVEDLELKKQVFAEL-EALA--KPDAILASNTSSLSITELAEALK------RPER-FIGLHFFNPVP 146 (307)
T ss_pred hhHhccCCEEEEeccccHHHHHHHHHHH-Hhhc--CCCcEEeeccCCCCHHHHHHHhC------Cchh-EEEEeccCCCC
Confidence 2268899999999984 3445688888 7777 88999999999999999998886 4567 88888765655
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
...- .=+..+...++ +..+.+.++...+|+...
T Consensus 147 ~m~L-VEvI~g~~T~~--e~~~~~~~~~~~igK~~v 179 (307)
T COG1250 147 LMPL-VEVIRGEKTSD--ETVERVVEFAKKIGKTPV 179 (307)
T ss_pred ccee-EEEecCCCCCH--HHHHHHHHHHHHcCCCCE
Confidence 4432 23456666677 899999999999998643
No 91
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.18 E-value=1.5e-09 Score=114.01 Aligned_cols=152 Identities=12% Similarity=0.177 Sum_probs=115.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCc-----------C--C----------Cc-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPE-----------P--M----------DF-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~-----------~--~----------g~-~~~s~~ 119 (341)
+||+|||+|.||..||..+. .+|+ +|+++|++++.+++..+ + + .+ .+++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI----PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-
Confidence 58999999999999999887 5885 99999999876543211 0 0 12 23333
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||-|++.+ .-.+++.++ ..++ ++++++.|.++++++..|.+.+. ...+ ++.+++-.|...
T Consensus 380 ~~~~~adlViEav~E~l~~K~~v~~~l-~~~~--~~~~ilasnTS~l~i~~la~~~~------~p~r-~~g~HffnP~~~ 449 (699)
T TIGR02440 380 RGFKDVDIVIEAVFEDLALKHQMVKDI-EQEC--AAHTIFASNTSSLPIGQIAAAAS------RPEN-VIGLHYFSPVEK 449 (699)
T ss_pred HHhccCCEEEEeccccHHHHHHHHHHH-HhhC--CCCcEEEeCCCCCCHHHHHHhcC------Cccc-EEEEecCCcccc
Confidence 5688999999999853 445788888 8888 88999999999999999998877 4567 888887666554
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
.. ..=++.++..++ +..+.+..+++.+|+.. .+.
T Consensus 450 ~~-lVEvv~g~~T~~--~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 450 MP-LVEVIPHAGTSE--QTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred Cc-eEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEEc
Confidence 33 233556677777 89999999999999964 453
No 92
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.18 E-value=1.6e-09 Score=113.90 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=116.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~e 120 (341)
+||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+. +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT----PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-A 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence 589999999999999999999995 999999998876542210 01 1 22333 4
Q ss_pred HhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||-||+. ..-++++.++ ...+ +++.++.|.++++++..|...+. ...+ ++..|+-.|....
T Consensus 389 ~~~~aDlViEav~E~l~~K~~vf~~l-~~~~--~~~~ilasnTS~l~i~~ia~~~~------~p~r-~ig~Hff~P~~~~ 458 (714)
T TIGR02437 389 GFDNVDIVVEAVVENPKVKAAVLAEV-EQHV--REDAILASNTSTISISLLAKALK------RPEN-FCGMHFFNPVHRM 458 (714)
T ss_pred HhcCCCEEEEcCcccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEecCCCcccC
Confidence 57899999999985 3455788898 8888 89999999999999999998877 4567 8888876666544
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.- .=++.++..++ +..+.+..++..+|+...
T Consensus 459 ~l-vEvv~g~~Ts~--~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 459 PL-VEVIRGEKSSD--ETIATVVAYASKMGKTPI 489 (714)
T ss_pred ce-EeecCCCCCCH--HHHHHHHHHHHHcCCEEE
Confidence 32 33456667777 899999999999999644
No 93
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.14 E-value=2.3e-09 Score=112.98 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~e 120 (341)
.||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+. +
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL----KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-S 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC----cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 579999999999999999999995 999999999876642210 01 1 22333 4
Q ss_pred HhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||-||+.+ .-++++.++ .+++ +++.++.|.++++++..|.+.+. ...+ ++..++-.|....
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l-~~~~--~~~~ilasNTSsl~i~~la~~~~------~p~r-~ig~Hff~P~~~m 480 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEV-EAVV--PPHCIIASNTSALPIKDIAAVSS------RPEK-VIGMHYFSPVDKM 480 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-eEEEeccCCcccC
Confidence 678999999999853 445788888 8888 89999999999999999999887 4567 8888876666544
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.- .-++.++..++ +..+.+..++..+|+...
T Consensus 481 ~L-vEvv~g~~Ts~--~~~~~~~~~~~~lgk~pv 511 (737)
T TIGR02441 481 QL-LEIITHDGTSK--DTLASAVAVGLKQGKVVI 511 (737)
T ss_pred ce-EEEeCCCCCCH--HHHHHHHHHHHHCCCeEE
Confidence 32 33456667777 899999999999999644
No 94
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=5.5e-09 Score=99.83 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=150.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----c-cccChHHH---hhcCCEEEEeeCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----F-ALNDNHRI---IKEAEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~-~~~s~~e~---~~~aDvIilaV~~ 134 (341)
|+..||+||+|.||+.++.++.++|+ +|.+|||++++.+.+.++.+ + .+.+.+|. ++..--|+|+|+.
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkA 77 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKA 77 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEec
Confidence 46789999999999999999999995 99999999999887655432 3 44566654 5689999999997
Q ss_pred -HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHh--ccccCCCCCCCCeEEEEcCCchhh--hcCceEEEEeCCC
Q psy316 135 -QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKK--LSVLVPNPNDAPTIIRVMPNTAMK--YGKGITGMCHDVH 209 (341)
Q Consensus 135 -~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~--l~~~~~~~~~~~~vvr~mpn~p~~--v~~g~~~l~~~~~ 209 (341)
..+..+++++ .|+| .++.+||+--+..=.+++++. +.. .+-. ++.+.-. -.+ ...|.+++..|.
T Consensus 78 G~~VD~~I~~L-~p~L--e~gDIiIDGGNs~y~DT~RR~~eL~~-----~Gi~-FvG~GVS-GGEeGA~~GPSiMpGG~- 146 (473)
T COG0362 78 GTPVDAVIEQL-LPLL--EKGDIIIDGGNSHYKDTIRRNKELSE-----KGIL-FVGMGVS-GGEEGARHGPSIMPGGQ- 146 (473)
T ss_pred CCcHHHHHHHH-Hhhc--CCCCEEEeCCCcCCchHHHHHHHHHh-----cCCe-EEecccc-ccccccccCCCcCCCCC-
Confidence 5688999999 9999 899999986554434554432 221 2222 2221100 011 123455554443
Q ss_pred CCccHHHHHHHHHHHHhcC-----C--eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHH----HHHcCCCHHHHHHHHH
Q psy316 210 LDKESEHLNMAIKIMEQGG-----I--VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADG----AVKQGIPRDMALRIGA 278 (341)
Q Consensus 210 ~~~~~~~~~~v~~ll~~lG-----~--~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea----~~~~Gl~~~~a~~lv~ 278 (341)
+ +..+.|.++|+++. . +.|++++.-..+..+..+|--|- -|+-+.|+ -..+|++.++.-++..
T Consensus 147 --~--eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYg--DMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 147 --K--EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYG--DMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred --H--HHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4 88999999999874 2 34776654333334333333332 22333332 1247888776666554
Q ss_pred HH---------HHHHHHHHHhhhhhccccCCCCh--HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHH
Q psy316 279 QL---------LKGSGQLVHKDLLRMDHAAQAHP--AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAA 337 (341)
Q Consensus 279 ~~---------~~gs~~l~~~~~~~~~~~~~~~p--~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~ 337 (341)
+. +.-++..+ |..|..+..| +.+.|..-.+|.=--..+.+|+-+---..+.+|+
T Consensus 221 ~WN~geL~SYLIeIT~~IL-----~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 221 EWNKGELDSYLIEITADIL-----RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred HhccCcchHHHHHHHHHHH-----hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 42 22333333 3333333322 3444544445433445567776665556666655
No 95
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.12 E-value=4.2e-09 Score=110.82 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=117.0
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDN 118 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~ 118 (341)
.+||+|||+|.||..||..++ .+|+ +|+++|++++.+++..+. .| + .+++.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL----PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh
Confidence 368999999999999999998 7785 999999998765542110 01 2 23333
Q ss_pred HHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
+.+++||+||-|++. ..-++++.++ ..++ ++++++.|.++++++..|.+.+. ...+ ++.+++-.|..
T Consensus 385 -~~~~~aDlViEav~E~~~~K~~v~~~l-e~~~--~~~~ilasnTS~l~i~~la~~~~------~p~r-~ig~Hff~P~~ 453 (708)
T PRK11154 385 -RGFKHADVVIEAVFEDLALKQQMVAEV-EQNC--APHTIFASNTSSLPIGQIAAAAA------RPEQ-VIGLHYFSPVE 453 (708)
T ss_pred -HHhccCCEEeecccccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHHhcC------cccc-eEEEecCCccc
Confidence 567899999999985 3455788888 8888 89999999999999999998877 4567 88888766665
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEc
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EII 233 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v 233 (341)
... ..=+..++..++ +..+.+..++..+|+. +.+
T Consensus 454 ~~~-lVEvv~g~~Ts~--~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 454 KMP-LVEVIPHAKTSA--ETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred cCc-eEEEECCCCCCH--HHHHHHHHHHHHcCCceEEE
Confidence 443 233556777777 9999999999999985 445
No 96
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.08 E-value=4e-10 Score=95.68 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=79.7
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--------------ccChHHHhhcCCEEEEe
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--------------LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--------------~~s~~e~~~~aDvIila 131 (341)
|+|+|+|.||..+|..|.++|+ +|+++.|++ +++.++++ |+ . ..+..+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999884 999999987 77766542 33 1 11112356789999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~ 174 (341)
||..++.++++.+ ++++ .+++.|+++.+|+. .+.+++.++
T Consensus 75 vKa~~~~~~l~~l-~~~~--~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 75 VKAYQLEQALQSL-KPYL--DPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp SSGGGHHHHHHHH-CTGE--ETTEEEEEESSSSSHHHHHHCHST
T ss_pred ecccchHHHHHHH-hhcc--CCCcEEEEEeCCCCcHHHHHHHcC
Confidence 9999999999999 9999 78889999999999 466777776
No 97
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.07 E-value=7.9e-10 Score=94.33 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl- 141 (341)
.++|+|||+|..|.+.|.+|.++|+ +|++..|... ..++.++ .|+...+..|+++.+|+|++.+|+....+++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vglr~~s~s~~~A~~-~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGV----NVIVGLREGSASWEKAKA-DGFEVMSVAEAVKKADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-----EEEEEE-TTCHHHHHHHH-TT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC----CEEEEecCCCcCHHHHHH-CCCeeccHHHHHhhCCEEEEeCChHHHHHHHH
Confidence 4789999999999999999999996 9998888665 5555555 4885567899999999999999999999998
Q ss_pred HHhhhcccccCCCcEEEEecCCCCH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+++ .|.| +++++++ .+-|..+
T Consensus 79 ~~I-~p~l--~~G~~L~-fahGfni 99 (165)
T PF07991_consen 79 EEI-APNL--KPGATLV-FAHGFNI 99 (165)
T ss_dssp HHH-HHHS---TT-EEE-ESSSHHH
T ss_pred HHH-HhhC--CCCCEEE-eCCcchh
Confidence 678 9999 8998776 4455443
No 98
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.03 E-value=2.1e-08 Score=98.50 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=138.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC------hhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS------ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~------~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.-.++|+|||+|.+|.+.|.+|...|+ +|.+--|. .+..+.+.+ -|+...+..++++.||+|++.+|+.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvglr~~~id~~~~s~~kA~~-dGF~v~~~~Ea~~~ADvVviLlPDt 108 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYALRKEAIAEKRASWRKATE-NGFKVGTYEELIPQADLVINLTPDK 108 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc----eeEEeccccccccccchHHHHHh-cCCccCCHHHHHHhCCEEEEcCChH
Confidence 446899999999999999999999995 77754443 233444444 2664467899999999999999998
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV 208 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~ 208 (341)
.-..+.+++ .+.+ +++.++. .+-|..+-.-.-..+ .+.. |+-+-|-.|... |.|+..+....
T Consensus 109 ~q~~v~~~i-~p~L--K~Ga~L~-fsHGFni~~~~i~~~------~dvd-VimvAPKgpG~~vR~~y~~G~Gvp~l~AV~ 177 (487)
T PRK05225 109 QHSDVVRAV-QPLM--KQGAALG-YSHGFNIVEVGEQIR------KDIT-VVMVAPKCPGTEVREEYKRGFGVPTLIAVH 177 (487)
T ss_pred HHHHHHHHH-HhhC--CCCCEEE-ecCCceeeeCceeCC------CCCc-EEEECCCCCCchHHHHHhcCCCceEEEEEe
Confidence 766677888 8999 8887655 445655432111122 4566 777777666532 56765444332
Q ss_pred ---CCCccHHHHHHHHHHHHhcCCe--EEc-C----C---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy316 209 ---HLDKESEHLNMAIKIMEQGGIV--EII-P----E---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALR 275 (341)
Q Consensus 209 ---~~~~~~~~~~~v~~ll~~lG~~--~~v-~----e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~ 275 (341)
+.+. ...+.+......+|.. -.+ + | +++..=+.|+|. +....++.-+..++.|.+++.|.+
T Consensus 178 ~~qD~~g--~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~----~~~~~~~~Fe~lve~G~~pe~A~k 251 (487)
T PRK05225 178 PENDPKG--EGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGM----LQAGSLLCFDKLVAEGTDPAYAEK 251 (487)
T ss_pred ecCCCCc--hHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhH----HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3444 5677778888888754 222 1 2 344443444443 223344555666789999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy316 276 IGAQLLKGSGQLVHK 290 (341)
Q Consensus 276 lv~~~~~gs~~l~~~ 290 (341)
.+..++.-..+++.+
T Consensus 252 ~~~~~~E~I~e~i~e 266 (487)
T PRK05225 252 LIQFGWETITEALKQ 266 (487)
T ss_pred HHhhhHHHHHHHHHh
Confidence 988888887777755
No 99
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.00 E-value=2.9e-08 Score=92.13 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=148.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
-.+||+|||+|+-|.+-+.+|.++|+ +|++--|.... .++..+ .|..+.+.+|+++.+|+|++-+|+..-.+|.
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGl----nViiGlr~g~~s~~kA~~-dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy 91 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL----NVIIGLRKGSSSWKKAKE-DGFKVYTVEEAAKRADVVMILLPDEQQKEVY 91 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCC----cEEEEecCCchhHHHHHh-cCCEeecHHHHhhcCCEEEEeCchhhHHHHH
Confidence 45799999999999999999999996 77776664333 444444 4775567899999999999999999999999
Q ss_pred H-HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC-CCCc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV-HLDK 212 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~-~~~~ 212 (341)
+ +| .|.| ++++.+. .+-|..+-.-.-.-| .+.. ++-+-|-.|... |.|+..++.-. +.+-
T Consensus 92 ~~~I-~p~L--k~G~aL~-FaHGfNihf~~i~pp------kdvd-V~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG 160 (338)
T COG0059 92 EKEI-APNL--KEGAALG-FAHGFNIHFGLIVPP------KDVD-VIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASG 160 (338)
T ss_pred HHHh-hhhh--cCCceEE-eccccceecceecCC------ccCc-EEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCc
Confidence 7 78 9999 7887544 556665432111112 4455 777778777643 56765554332 2344
Q ss_pred cHHHHHHHHHHHHhcCCe--EEc-----CC---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV--EII-----PE---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLK 282 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~--~~v-----~e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~ 282 (341)
...+........+|-. -++ .| +++..=+.|+|-.. .++.+--|..++.|.+++.|+.-..+-+.
T Consensus 161 --~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~----~li~agfetLvEaGy~PE~AyfE~lhE~k 234 (338)
T COG0059 161 --KALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQ----ALIKAGFETLVEAGYQPELAYFECLHELK 234 (338)
T ss_pred --hHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5677778888888731 112 12 34444445544322 23334445567899999988876666555
Q ss_pred HHHHHHHh-hhhhccccCCCChHHHHHhcCCCc
Q psy316 283 GSGQLVHK-DLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 283 gs~~l~~~-~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
=...++.+ ++..|.+ +-+++.++-+-+..|.
T Consensus 235 lIvdLiyegGi~~M~~-siSnTAeyG~~~~gpr 266 (338)
T COG0059 235 LIVDLIYEGGITNMRY-SISNTAEYGDYTRGPR 266 (338)
T ss_pred HHHHHHHHhhHHHHHH-hcCCHHHhcccccCce
Confidence 55555543 2333333 5556777777776664
No 100
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.99 E-value=3.2e-08 Score=99.27 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=119.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------C------------c-cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------D------------F-ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------g------------~-~~~s~~e~~~~a 125 (341)
|||+|||+|.+|..+|..|.++|+ .++|+++|+++++.+.+++.. | + .+++..+++++|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~--g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCP--DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 689999999999999999998863 358999999999999865421 1 2 334456678999
Q ss_pred CEEEEeeC-hH--------------HHHHHHHHhhhcccccCCCcEEEE--ecCCCCHHHHHHhccccCCCCCCCCeEEE
Q psy316 126 EYVFLAMK-PQ--------------YLDSAIQGLVNDKVTLNSSRCIIS--MLVGVDLETLKKKLSVLVPNPNDAPTIIR 188 (341)
Q Consensus 126 DvIilaV~-~~--------------~v~~vl~~i~~~~l~~~~~~iIVs--~~agi~~~~l~~~l~~~~~~~~~~~~vvr 188 (341)
|++|+||| |. .+.++++++ .+++ +++++||- +..+-+.+.+...+.... .+..+.+.
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i-~~~l--~~~~lVv~~STvp~Gtt~~~~~~l~~~~---~g~~f~v~ 153 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMI-ADVS--KSDKIVVEKSTVPVKTAEAIEKILTHNS---KGINFQIL 153 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHH-HhhC--CCCcEEEEeCCCCCChHHHHHHHHHhhC---CCCCeEEE
Confidence 99999995 22 578888999 8888 78887772 222222344444333100 11111122
Q ss_pred EcC-----Cchhhh-cCceEEEEeCCC--CCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHH---HHHH
Q psy316 189 VMP-----NTAMKY-GKGITGMCHDVH--LDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAY---LFLV 255 (341)
Q Consensus 189 ~mp-----n~p~~v-~~g~~~l~~~~~--~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~---~~~~ 255 (341)
..| .....- ..-..++.++.+ ..+ +..+.+..|++.+- ..+.+..-.-..++.++. ++| -..+
T Consensus 154 ~~PErl~~G~a~~d~~~p~riViG~~~~~~~~--~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~e--N~~ra~~Iaf 229 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQ--KAVQALKDVYAHWVPEERIITTNLWSAELSKLAA--NAFLAQRISS 229 (473)
T ss_pred ECCCccCCCCcccccCCCCEEEEccCCchhhH--HHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHH--HHHHHHHHHH
Confidence 222 211111 111123333321 112 35677788888774 233333222222333332 233 3346
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q psy316 256 MDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 256 ~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
+..|+..+.+.|++..+..+.+.
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhC
Confidence 67777888899999887665543
No 101
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.88 E-value=6.3e-09 Score=91.92 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=66.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------------g~-~~~s~~e~~~~ 124 (341)
|||+|||+|.+|..+|..|.++|+ +|+.+|.++++.+.+++.. .+ .+.+..+++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc
Confidence 799999999999999999999995 9999999999988876421 12 34566777899
Q ss_pred CCEEEEeeC-h---------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 125 AEYVFLAMK-P---------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 125 aDvIilaV~-~---------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|++|+||| | ..+.++++++ .+++ +++++||- -+.+++
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i-~~~l--~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESI-APVL--RPGDLVVI-ESTVPP 124 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHH-HHHH--CSCEEEEE-SSSSST
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHH-HHHH--hhcceEEE-ccEEEE
Confidence 999999997 2 2378888999 8888 78877773 344554
No 102
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.86 E-value=3.7e-08 Score=103.32 Aligned_cols=172 Identities=9% Similarity=0.074 Sum_probs=123.6
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhh--------
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMK-------- 196 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-------- 196 (341)
||||+|+..+.++++++ .+++ +++++|.++ ++++.. .+.+.++. ...+ ++..||..-.+
T Consensus 1 vila~Pv~~~~~~~~~~-~~~~--~~~~~vtDv-~SvK~~i~~~~~~~l~~-----~~~~-fvg~HPMaG~e~~G~~~a~ 70 (673)
T PRK11861 1 VLLAAPVAQTGPLLARI-APFL--DASTIVTDA-GSTKSDVVAAARAALGA-----RIGQ-FVPGHPIAGRESSGVDAAL 70 (673)
T ss_pred CEEEcCHHHHHHHHHHH-hhhC--CCCcEEEec-CcccHHHHHHHHHhccc-----cCCe-EEecCCcCcCcchhhhhhC
Confidence 69999999999999999 9988 777666655 667654 33445541 1134 56666532211
Q ss_pred ---hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHH
Q psy316 197 ---YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDM 272 (341)
Q Consensus 197 ---v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~ 272 (341)
+.....++++.+..+. +..+.++++++.+|..+ +++.+.||.++|+.++.|++++.. ++....+. .+.+.
T Consensus 71 ~~Lf~~~~~il~p~~~~~~--~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~---l~~~~~~~-~~~~~ 144 (673)
T PRK11861 71 ADLYVGRNVVLCALPENAP--DALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA---LVEQILGE-SDAEL 144 (673)
T ss_pred hhHhCCCeEEEecCCCCCH--HHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH---HHHHHhhc-cChhH
Confidence 1222456777666566 78999999999999764 569999999999999999977764 44433222 13455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 273 ALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 273 a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
...+...+|+...++.. .+|..|.+.+.++.....+.|+.|.+
T Consensus 145 ~~~~a~~gfrd~tRia~-----------~~p~lw~di~~~N~~~i~~~l~~~~~ 187 (673)
T PRK11861 145 KFSYAAGGFRDFTRIAA-----------SSPEMWRDVCLANRAALLDELDAYTA 187 (673)
T ss_pred HHHhcccchhccccccc-----------CCHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 56788888888877653 48999999999999888888887776
No 103
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=2e-07 Score=88.99 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCChhhh-------hh-----------cCcC-----------C-Cc-cccC--hHHH
Q psy316 75 MAQAVATSLIRTGLCIPAQIIASAPSERFK-------LH-----------WPEP-----------M-DF-ALND--NHRI 121 (341)
Q Consensus 75 mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-------~~-----------l~~~-----------~-g~-~~~s--~~e~ 121 (341)
||..||..++.+|+ +|.++|++++.+ ++ +.+. + .+ .+.+ ..++
T Consensus 1 MG~giA~~~a~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a 76 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA 76 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH
Confidence 78999999999995 999999998431 11 1110 0 12 2222 5577
Q ss_pred hhcCCEEEEeeCh-HHHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP-QYLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~-~~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||.||+. ..++ .++.++ ...+ +++++|.|.++++++..|.+.+. ...+ ++.++.-.|.....
T Consensus 77 ~~~aD~ViEav~E~~~~K~~~f~~l-~~~~--~~~~ilaSntS~~~~~~la~~~~------~p~r-~~g~Hf~~Pp~~~~ 146 (314)
T PRK08269 77 LADADLVFEAVPEVLDAKREALRWL-GRHV--DADAIIASTTSTFLVTDLQRHVA------HPER-FLNAHWLNPAYLMP 146 (314)
T ss_pred hccCCEEEECCcCCHHHHHHHHHHH-HhhC--CCCcEEEEccccCCHHHHHhhcC------Cccc-EEEEecCCccccCc
Confidence 8999999999985 3444 466777 7778 89999999999999999998876 3456 77777655544332
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
..-+..++..++ +.++.+.++++.+|+.+ ++.+.- ..+ +. -.+...+.|++.. +.+.|+++++..+++.
T Consensus 147 -lvEVv~g~~t~~--e~~~~~~~ll~~lGk~~v~v~d~~-Gfi--~n---ri~~~~l~EAl~l-~e~g~~~~e~iD~a~~ 216 (314)
T PRK08269 147 -LVEVSPSDATDP--AVVDRLAALLERIGKVPVVCGPSP-GYI--VP---RIQALAMNEAARM-VEEGVASAEDIDKAIR 216 (314)
T ss_pred -eEEEeCCCCCCH--HHHHHHHHHHHHcCCcEEEecCCC-Ccc--hH---HHHHHHHHHHHHH-HHhCCCCHHHHHHHHH
Confidence 223456666777 89999999999999864 554321 111 01 1123334444433 3456677777766655
Q ss_pred H
Q psy316 279 Q 279 (341)
Q Consensus 279 ~ 279 (341)
.
T Consensus 217 ~ 217 (314)
T PRK08269 217 T 217 (314)
T ss_pred h
Confidence 3
No 104
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.83 E-value=1.8e-08 Score=94.05 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||||||+|+||..+++.|.+.+. ...-+.+++|++++++.+.++++. ...+.++++.++|+|++|++++.+.+++.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~ 80 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-NAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPK 80 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-CeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHH
Confidence 689999999999999999987641 112366899999998888776777 677888888899999999999998888776
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
+
T Consensus 81 a 81 (265)
T PRK13304 81 S 81 (265)
T ss_pred H
Confidence 5
No 105
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=7.6e-07 Score=85.89 Aligned_cols=242 Identities=15% Similarity=0.158 Sum_probs=140.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|=.|...+..|.+.|| +|++.|.++++.+.|++.. | + .++|..+++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence 789999999999999999999994 9999999999998876521 1 3 45677788999
Q ss_pred CCEEEEeeC--hH--------HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcC
Q psy316 125 AEYVFLAMK--PQ--------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 125 aDvIilaV~--~~--------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
+|++|+||+ +. .++.+++++ .+++ +..++||. -++++ .+.+++.+.... .... +.+..
T Consensus 77 adv~fIavgTP~~~dg~aDl~~V~ava~~i-~~~~--~~~~vvV~-KSTVPvGt~~~v~~~i~~~~---~~~~--f~v~~ 147 (414)
T COG1004 77 ADVVFIAVGTPPDEDGSADLSYVEAVAKDI-GEIL--DGKAVVVI-KSTVPVGTTEEVRAKIREEN---SGKD--FEVAS 147 (414)
T ss_pred CCEEEEEcCCCCCCCCCccHHHHHHHHHHH-Hhhc--CCCeEEEE-cCCCCCCchHHHHHHHHhhc---ccCC--ceEec
Confidence 999999995 22 367788888 8887 55566663 23444 345544433100 0011 11222
Q ss_pred CchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhc---CCeEEcCCCchhHHHHHhcchHHHHHH---HH
Q psy316 192 NTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQG---GIVEIIPESMMNSFGAIAGSGCAYLFL---VM 256 (341)
Q Consensus 192 n~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~l---G~~~~v~e~~~d~~~al~g~gpa~~~~---~~ 256 (341)
| |....+|. .++.... ++ ...+.+++|+..+ ..++.+..-.-..+..++. ++|++. |+
T Consensus 148 N-PEFLREG~Av~D~~~PdRIViG~~--~~--~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaa--NafLAtKIsFi 220 (414)
T COG1004 148 N-PEFLREGSAVYDFLYPDRIVIGVR--SE--RAAAVLRELYAPFLRQDVPILFTDLREAELIKYAA--NAFLATKISFI 220 (414)
T ss_pred C-hHHhcCcchhhhccCCCeEEEccC--Ch--hHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHH--HHHHHHHHHHH
Confidence 2 44444442 1223222 12 3466777777665 4444442211122233332 466654 67
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHH
Q psy316 257 DAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336 (341)
Q Consensus 257 eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a 336 (341)
..+...+.+.|++-++..+-+..=-+=....+ + .|.-.. --|=|. -|.+-++..++.+....+.+|
T Consensus 221 NEia~ice~~g~D~~~V~~gIGlD~RIG~~fl--------~-aG~GyG----GsCfPK-D~~AL~~~a~~~~~~~~ll~a 286 (414)
T COG1004 221 NEIANICEKVGADVKQVAEGIGLDPRIGNHFL--------N-AGFGYG----GSCFPK-DTKALIANAEELGYDPNLLEA 286 (414)
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCchhhHhhC--------C-CCCCCC----CcCCcH-hHHHHHHHHHhcCCchHHHHH
Confidence 77888889999997765443321111111111 1 111100 012231 256667777777777777777
Q ss_pred HHhh
Q psy316 337 ARRT 340 (341)
Q Consensus 337 ~~~a 340 (341)
+.++
T Consensus 287 vv~v 290 (414)
T COG1004 287 VVEV 290 (414)
T ss_pred HHHH
Confidence 6554
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.74 E-value=5.8e-08 Score=93.36 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
..++|||||+|+||+++|+.|...|. +|++|+|+++....... ...+..+++++||+|++++|.. ....++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~d~~~~~~~~~~~----~~~~l~ell~~aDiVil~lP~t~~t~~li 216 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA----TITAYDAYPNKDLDFLT----YKDSVKEAIKDADIISLHVPANKESYHLF 216 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEEeCChhHhhhhhh----ccCCHHHHHhcCCEEEEeCCCcHHHHHHH
Confidence 34689999999999999999998885 99999998765332111 3457889999999999999954 334444
Q ss_pred -HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.++ .+.+ +++.++|++.-|.- .+.|.+.+.
T Consensus 217 ~~~~-l~~m--k~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 217 DKAM-FDHV--KKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred hHHH-HhcC--CCCcEEEEcCCccccCHHHHHHHHH
Confidence 455 5667 88999999987644 456666665
No 107
>KOG2711|consensus
Probab=98.72 E-value=5.7e-07 Score=84.79 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCC---CCCCeEEEEcCChh------hhhhc-CcC-----C--------Cc-cccCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGL---CIPAQIIASAPSER------FKLHW-PEP-----M--------DF-ALNDN 118 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~---~~~~~V~v~~r~~e------~~~~l-~~~-----~--------g~-~~~s~ 118 (341)
++.||+|||.||+|++|++.+..+-. .-..+|..|-+.++ ++... .+. | ++ ..+|.
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 46799999999999999998765421 11246777765332 22211 111 1 23 56788
Q ss_pred HHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH-----------HHHHhccccCCCCCCCCeEE
Q psy316 119 HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE-----------TLKKKLSVLVPNPNDAPTII 187 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~-----------~l~~~l~~~~~~~~~~~~vv 187 (341)
.+++.+||++++.+|++.+..++++| ..++ +++...||+..|+... .+.+.++ -... +
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l-~g~v--k~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg------I~~~--v 168 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQL-KGYV--KPGATAISLIKGVEVGEEGPGIRLISQIIHRALG------IPCS--V 168 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHH-hccc--CCCCeEEEeecceeccCCCCceeehHHHHHHHhC------CCce--e
Confidence 99999999999999999999999999 9999 8999999999998742 2334444 1122 3
Q ss_pred EEcCCchhhhcCce---EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 188 RVMPNTAMKYGKGI---TGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 188 r~mpn~p~~v~~g~---~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
-..||.+.++.+.. +.+.+.+. . +.-..+..||+.=-..+++
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~~--~--~~~~~l~~lf~~p~FrV~~ 213 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKDK--K--EAGILLKKLFRTPYFRVVV 213 (372)
T ss_pred ecCCchHHHHHhccccceeEeccch--h--hcchHHHHHhCCCceEEEE
Confidence 34578887774432 22333221 1 2223577788776655554
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.71 E-value=1.5e-06 Score=81.41 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---------------cccChHHHhhcCCEEEEeeChHHHH
Q psy316 74 NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---------------ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 74 ~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---------------~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.||+.++..|.++|+ +|++++|+ ++.+.++++ |+ ...++.+ ....|+||+|||..++.
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~~r~-~~~~~i~~~-Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLLARG-EQLEALNQE-GLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEEecH-HHHHHHHHC-CcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 378999999999984 99999997 666666542 32 1122233 56899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEc---------CCchhhhcCceEEEEeCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVM---------PNTAMKYGKGITGMCHDV 208 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~m---------pn~p~~v~~g~~~l~~~~ 208 (341)
++++.+ ++.+ .++++||++.+|+.. +.+.+.++. .+ ++... |+.-...+.|...+...+
T Consensus 74 ~~l~~l-~~~l--~~~~~iv~~qNG~g~~~~l~~~~~~-------~~-v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~ 142 (293)
T TIGR00745 74 EAAALL-LPLI--GKNTKVLFLQNGLGHEERLRELLPA-------RR-ILGGVVTHGAVREEPGVVHHAGLGATKIGDYV 142 (293)
T ss_pred HHHHHh-Hhhc--CCCCEEEEccCCCCCHHHHHHHhCc-------cC-EEEEEEEEeeEEcCCcEEEEeccccEEEecCC
Confidence 999999 9998 888999999999974 567776661 23 32211 221111122322222221
Q ss_pred CCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcc
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGS 247 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~ 247 (341)
. .. +....+.++|+..|....+.++ .++.++++.++
T Consensus 143 ~-~~--~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~ 191 (293)
T TIGR00745 143 G-EN--EAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDC 191 (293)
T ss_pred C-ch--HHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCC
Confidence 1 12 4456778888888876555433 25667777765
No 109
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.70 E-value=4.9e-08 Score=91.34 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++||||||+|+||..+++.|.+.. +..++. +++|++++.+.+.+++|. .+.+.++++.++|+|++|+|+....++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~--~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGL--PGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcC--CCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHH
Confidence 378999999999999999998640 123654 899999998888776774 567888888999999999999888887
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
....
T Consensus 84 ~~~a 87 (271)
T PRK13302 84 VEPV 87 (271)
T ss_pred HHHH
Confidence 7665
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.68 E-value=1.3e-08 Score=86.68 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=67.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChHHHhhcCCEEEEeeChHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNHRIIKEAEYVFLAMKPQYL- 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~e~~~~aDvIilaV~~~~v- 137 (341)
.++|+|||+|.||.++++.|.+.|. ++|++++|++++++.+.++++. ...+..+.+.++|+||.|+|+...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~---~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGA---AKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 4689999999999999999998862 5899999999888776554431 344566678899999999998764
Q ss_pred -HHHHHHhhhcccccCCCcEEEEec
Q psy316 138 -DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 138 -~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
..+... ...+ +++++++++.
T Consensus 96 ~~~~~~~--~~~~--~~~~~v~D~~ 116 (155)
T cd01065 96 GDELPLP--PSLL--KPGGVVYDVV 116 (155)
T ss_pred CCCCCCC--HHHc--CCCCEEEEcC
Confidence 222211 1234 6788888774
No 111
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.67 E-value=4.7e-06 Score=75.85 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=126.9
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~~~s~ 118 (341)
|||++.|+||- |..||-.+..+|| +|.+.++|.+ ..+++.+ -|+ .++|.
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLaePn~d~~dd~~w~~ved-AGV~vv~dD 76 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLAEPNRDIMDDEHWKRVED-AGVEVVSDD 76 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEeecCCccccCHHHHHHHHh-cCcEEecCc
Confidence 67888888873 5678888899995 9999987643 3445555 488 77777
Q ss_pred HHHhhcCCEEEEeeChH-HHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCC-c
Q psy316 119 HRIIKEAEYVFLAMKPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPN-T 193 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn-~ 193 (341)
.++++.+++.+|.+|-. ..-.+.++| .+++ ..+.+|+.++.-.++ ..|+..|.. + +.+.. +..++|. .
T Consensus 77 ~eaa~~~Ei~VLFTPFGk~T~~Iarei-~~hv--pEgAVicnTCT~sp~vLy~~LE~~Lr~--k-R~dVG-vssmHPAgv 149 (340)
T COG4007 77 AEAAEHGEIHVLFTPFGKATFGIAREI-LEHV--PEGAVICNTCTVSPVVLYYSLEGELRT--K-REDVG-VSSMHPAGV 149 (340)
T ss_pred hhhhhcceEEEEecccchhhHHHHHHH-HhhC--cCCcEecccccCchhHHHHHhhhhhcC--c-hhhcC-ccccCCCCC
Confidence 88999999999999974 777888888 8888 788888776543333 233443431 0 01222 3333332 2
Q ss_pred hhhhcCceEEEEeC-----CCCCccHHHHHHHHHHHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHH----
Q psy316 194 AMKYGKGITGMCHD-----VHLDKESEHLNMAIKIMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGA---- 263 (341)
Q Consensus 194 p~~v~~g~~~l~~~-----~~~~~~~~~~~~v~~ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~---- 263 (341)
|..-.++..++... .-.++ ++.+++.+|.++.|+..++ +.+....+.- .+.-.....++++.+..
T Consensus 150 PGtp~h~~yviagr~t~g~elATe--EQi~r~velaes~Gk~~yv~padv~s~VaD---mg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 150 PGTPQHGHYVIAGRSTEGKELATE--EQIERCVELAESTGKEVYVLPADVVSAVAD---MGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred CCCCCCceEEEeccCCCceeeccH--HHHHHHHHHHHhcCCceEecCHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH
Confidence 33334455444411 11345 8899999999999997654 6543333222 22223334444444432
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+...+-+..++.-.+.++..
T Consensus 225 qIi~AP~eMIekQilmtLqTmAsLvet 251 (340)
T COG4007 225 QIIGAPKEMIEKQILMTLQTMASLVET 251 (340)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 125666665555555555555555543
No 112
>PRK07574 formate dehydrogenase; Provisional
Probab=98.64 E-value=1.3e-07 Score=92.50 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|...|. +|.+|+|++...+.. ++.|+ ...+.+++++.||+|++++|. ...+.+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~l 265 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYTDRHRLPEEVE-QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHL 265 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCchhhH-hhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHH
Confidence 35789999999999999999998885 999999986332222 22466 456889999999999999994 556666
Q ss_pred HH-HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
+. +. ...+ +++.++|++.-|-- .+.|.+.+.
T Consensus 266 i~~~~-l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 266 FDADV-LSRM--KRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred hCHHH-HhcC--CCCcEEEECCCCchhhHHHHHHHHH
Confidence 63 34 4456 88999999876643 455655554
No 113
>PLN03139 formate dehydrogenase; Provisional
Probab=98.62 E-value=1.7e-07 Score=91.68 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=77.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|..-|. +|.+|+|+....+...+ .|+ ...+.++++.+||+|++++|. ...+.+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~l 272 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYHDRLKMDPELEKE-TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGM 272 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC----EEEEECCCCcchhhHhh-cCceecCCHHHHHhhCCEEEEeCCCCHHHHHH
Confidence 45799999999999999999998885 89999997543333222 566 556899999999999999994 566666
Q ss_pred HH-HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
+. ++ ...+ +++.++|++.-|-- .+.|.+.+.
T Consensus 273 i~~~~-l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 273 FNKER-IAKM--KKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred hCHHH-HhhC--CCCeEEEECCCCchhhHHHHHHHHH
Confidence 63 34 4556 88999999875533 455656554
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.62 E-value=1.2e-07 Score=91.24 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|+||+.+|+.|...|. +|.+|+|++.... ..+.++...+..+++++||+|++++|. .....++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM----RILYYSRTRKPEA--EKELGAEYRPLEELLRESDFVSLHVPLTKETYHMI 222 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCChhh--HHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhcc
Confidence 46899999999999999999998885 8999999764422 122355334788999999999999995 4455555
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|+++-|- +.+.|.+.+.
T Consensus 223 ~~~~-~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 223 NEER-LKLM--KPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CHHH-HhcC--CCCeEEEECcCchhcCHHHHHHHHH
Confidence 344 4556 7899999987653 3456666665
No 115
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.61 E-value=4.1e-07 Score=73.89 Aligned_cols=102 Identities=16% Similarity=0.303 Sum_probs=75.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~v 140 (341)
+||||||+|.+|......+.+.. +..++ .++++++++++.+.+++|+ .++|.+++++ +.|+|++++|+....+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~--~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~ 78 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS--PDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEI 78 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT--TTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcC--CCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHH
Confidence 48999999999999999998873 12354 5899999999988777888 8889999887 79999999999877777
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+... .. ..-.+++.=--+.+.++.++..
T Consensus 79 ~~~~-l~----~g~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 79 AKKA-LE----AGKHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp HHHH-HH----TTSEEEEESSSSSSHHHHHHHH
T ss_pred HHHH-HH----cCCEEEEEcCCcCCHHHHHHHH
Confidence 6655 22 1224555432344566655543
No 116
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=3.8e-06 Score=80.95 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=116.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~ 122 (341)
|.++|++||+|-+|..+|-.+.++|+ +|+.+|.|+.+.+.+.+-. | + .+++. +.+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l 82 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGF----KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EEL 82 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCC----ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhc
Confidence 55899999999999999999999996 9999999999988876421 1 1 23333 345
Q ss_pred hcCCEEEEeeCh----------HHHHHHHHHhhhcccccCCCcEEE--EecCCCCHHHHHHhcccc-CCCCCCCCe----
Q psy316 123 KEAEYVFLAMKP----------QYLDSAIQGLVNDKVTLNSSRCII--SMLVGVDLETLKKKLSVL-VPNPNDAPT---- 185 (341)
Q Consensus 123 ~~aDvIilaV~~----------~~v~~vl~~i~~~~l~~~~~~iIV--s~~agi~~~~l~~~l~~~-~~~~~~~~~---- 185 (341)
+.||++|+|||. ..+.+..+.+ .++| ++|++|| |++-.-+.+.+..++-+. -+..-+..+
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sI-a~~L--~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay 159 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSI-APVL--KKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY 159 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHH-HHhc--CCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence 699999999972 1366777888 9999 8998877 332222344443322110 000000110
Q ss_pred -EEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCC-eEEcCCCchhHHHHHhcch-HHHHHHHHHHHHHH
Q psy316 186 -IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGI-VEIIPESMMNSFGAIAGSG-CAYLFLVMDAMADG 262 (341)
Q Consensus 186 -vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~-~~~v~e~~~d~~~al~g~g-pa~~~~~~eal~ea 262 (341)
--|++|+....--....=+.+| .++ ...+.+..|.+.+=. ++.++.........+.-.. -.---.++..|+-.
T Consensus 160 sPERv~PG~~~~el~~~~kVIgG--~tp--~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 160 SPERVLPGNVLKELVNNPKVIGG--VTP--KCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred CccccCCCchhhhhhcCCceeec--CCH--HHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1366665432211111112333 234 556666777777644 3445443222223332210 01111234455555
Q ss_pred HHHcCCCHHHHHHHHH
Q psy316 263 AVKQGIPRDMALRIGA 278 (341)
Q Consensus 263 ~~~~Gl~~~~a~~lv~ 278 (341)
+.++|++.-++.+++.
T Consensus 236 ~~~~GIdvwevIeaAn 251 (436)
T COG0677 236 CNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHhCCcHHHHHHHhc
Confidence 7789999777766554
No 117
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.53 E-value=2.7e-07 Score=88.87 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH-HH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL-DS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v-~~ 139 (341)
-.++|||||+|+||+++++.|.+ .| .+|++|+|++.... . ..+ ...+.++++++||+|++++|.... ..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~---~-~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG----SDVVAYDPFPNAKA---A-TYVDYKDTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----CEEEEECCCccHhH---H-hhccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence 35789999999999999999953 45 48999998765421 1 123 445788999999999999996543 33
Q ss_pred HH-HHhhhcccccCCCcEEEEecCCCCH--HHHHHhcc
Q psy316 140 AI-QGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLS 174 (341)
Q Consensus 140 vl-~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~ 174 (341)
++ .+. .+.+ +++.++|+++.|... +.+.+.+.
T Consensus 217 li~~~~-l~~m--k~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 217 LFNADL-FKHF--KKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hcCHHH-HhcC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 33 234 4556 789999999877553 44545444
No 118
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.51 E-value=2.7e-07 Score=88.03 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++|+|||+|.||..+++.|...|. .+|++++|++++++.+++++|. . ..+..+.+.++|+||.|++.....++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~ 254 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV---AEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKI 254 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHH
Confidence 5789999999999999999988663 5899999999998888776765 2 23456778899999999986655444
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+..+..... .++.++|+++.+
T Consensus 255 ~~~~~~~~~--~~~~~viDlavP 275 (311)
T cd05213 255 VERAMKKRS--GKPRLIVDLAVP 275 (311)
T ss_pred HHHHHhhCC--CCCeEEEEeCCC
Confidence 444312211 256788888643
No 119
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.51 E-value=1.4e-07 Score=82.78 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|++|+.+++.+..-|. +|++|+|+......... .++...+.+++++.||+|++++|. .....++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~~~~~~~-~~~~~~~l~ell~~aDiv~~~~plt~~T~~li 109 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM----RVIGYDRSPKPEEGADE-FGVEYVSLDELLAQADIVSLHLPLTPETRGLI 109 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-----EEEEEESSCHHHHHHHH-TTEEESSHHHHHHH-SEEEE-SSSSTTTTTSB
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc----eeEEecccCChhhhccc-ccceeeehhhhcchhhhhhhhhccccccceee
Confidence 45899999999999999999998885 99999998776542323 344455889999999999999984 2222233
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. -..+ +++.++|++.-| ++.+.+.+.+.
T Consensus 110 ~~~~-l~~m--k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 110 NAEF-LAKM--KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SHHH-HHTS--TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eeee-eecc--ccceEEEeccchhhhhhhHHHHHHh
Confidence 122 2235 788899998755 33456666665
No 120
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.51 E-value=4.4e-07 Score=85.64 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++++|||+|.||.++++.|...|. +|++++|++++.+.+.+ .|. ...+..+.++++|+||.++|...+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~~R~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDiVint~P~~ii~-- 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA----RVFVGARSSADLARITE-MGLIPFPLNKLEEKVAEIDIVINTIPALVLT-- 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-CCCeeecHHHHHHHhccCCEEEECCChHHhC--
Confidence 4689999999999999999999884 89999999887766544 454 2334567788999999999876432
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+. ...+ +++.+||++..
T Consensus 224 -~~~-l~~~--k~~aliIDlas 241 (287)
T TIGR02853 224 -ADV-LSKL--PKHAVIIDLAS 241 (287)
T ss_pred -HHH-HhcC--CCCeEEEEeCc
Confidence 222 2335 67889998864
No 121
>KOG2653|consensus
Probab=98.46 E-value=8.4e-06 Score=77.28 Aligned_cols=252 Identities=17% Similarity=0.143 Sum_probs=144.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC--CC--c-cccChHHH---hhcCCEEEEeeCh-H
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP--MD--F-ALNDNHRI---IKEAEYVFLAMKP-Q 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~--~g--~-~~~s~~e~---~~~aDvIilaV~~-~ 135 (341)
+.||+||++.||+.++.++.++|+ .|.+|||+..+.+.+.++ .| + -..|+++. ++..-+|++.||. .
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf----~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~ 82 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGF----TVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGA 82 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCc----eEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCC
Confidence 569999999999999999999996 999999998887754321 12 3 45677776 4578999999986 5
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCch-hh--hcCceEEEEeCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTA-MK--YGKGITGMCHDVH 209 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p-~~--v~~g~~~l~~~~~ 209 (341)
.+...++++ .|+| .++.+||+--+..=.++. +++.. .+ +.-+..... .+ ...|.+.+..+
T Consensus 83 pVD~~I~~L-~p~L--ekgDiIIDGGNs~y~dT~RR~~el~k------~G---ilfvG~GVSGGEEGAR~GPSlMpGg-- 148 (487)
T KOG2653|consen 83 PVDQFIEEL-VPYL--EKGDIIIDGGNSEYQDTERRCRELAK------KG---ILFVGSGVSGGEEGARYGPSLMPGG-- 148 (487)
T ss_pred cHHHHHHHH-Hhhc--CCCCEEEeCCcccCcchHHHHHHHHh------cC---cEEEecCccCcccccccCCccCCCC--
Confidence 678888999 9999 889999975443222222 22222 11 111111100 00 11233443333
Q ss_pred CCccHHHHHHHHHHHHhcC-------C-eEEcCCCchhHHHHHhcchHHHH--HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy316 210 LDKESEHLNMAIKIMEQGG-------I-VEIIPESMMNSFGAIAGSGCAYL--FLVMDAMADGAVK-QGIPRDMALRIGA 278 (341)
Q Consensus 210 ~~~~~~~~~~v~~ll~~lG-------~-~~~v~e~~~d~~~al~g~gpa~~--~~~~eal~ea~~~-~Gl~~~~a~~lv~ 278 (341)
++ +....++++|+.+. . +.|+++..-..+..+..+|.-|- ..+.|+.-- ..+ .|++-++.-++..
T Consensus 149 -~~--~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~v-lk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 149 -SK--EAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDV-LKSVLGLSNDEIAEVFD 224 (487)
T ss_pred -Ch--HHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHH-HHHhcCCcHHHHHHHHH
Confidence 24 67777888887652 1 35777654344444443333221 122222211 223 6888776655554
Q ss_pred HHHHHHHH----HHHhhhhhccccCCCCh-HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHH
Q psy316 279 QLLKGSGQ----LVHKDLLRMDHAAQAHP-AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338 (341)
Q Consensus 279 ~~~~gs~~----l~~~~~~~~~~~~~~~p-~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~ 338 (341)
..=.|-.+ -+..++.|+.+-.|.+. +.+.|.--.+|.=--..+.+||-+---..+.+|+.
T Consensus 225 ~WN~geleSfLieIT~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavf 289 (487)
T KOG2653|consen 225 DWNKGELESFLIEITADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVF 289 (487)
T ss_pred hhcccchhHHHHHHhHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHH
Confidence 42222111 11124556666455432 33444433444335566778877766666766664
No 122
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.44 E-value=1.8e-06 Score=77.28 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=72.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
++||+||||++|..+.+.+. .|-.+-.-+.+|||+.+++..+.+.++. ...+.++.+...|+++-|-.++++++...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHH
Confidence 58999999999999987554 4423345688999999999988775565 567888888999999999999999998877
Q ss_pred hhhcccccCCCcEEEEecC
Q psy316 144 LVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~a 162 (341)
+ ... ..+.+|+|+-+
T Consensus 80 ~-L~~---g~d~iV~SVGA 94 (255)
T COG1712 80 I-LKA---GIDVIVMSVGA 94 (255)
T ss_pred H-Hhc---CCCEEEEechh
Confidence 6 221 24567888744
No 123
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.44 E-value=9.6e-07 Score=84.29 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl~ 142 (341)
.++|||||+|+||+.+++.|...|. +|++|+|+++....... + ....+.++++++||+|++++|. ...+.++.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~~~~~~~~~~~~~-~-~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGF----PLRCWSRSRKSWPGVQS-F-AGREELSAFLSQTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCCCCCCCcee-e-cccccHHHHHhcCCEEEECCCCCHHHHHHhH
Confidence 4799999999999999999998885 99999987644221111 1 0234678999999999999994 45666663
Q ss_pred -HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 143 -GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 143 -~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+. ...+ +++.++|++.=|- ..+.|.+.+.
T Consensus 210 ~~~-l~~m--k~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 210 QQL-LEQL--PDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HHH-HhcC--CCCcEEEECCCccccCHHHHHHHHh
Confidence 33 3456 7899999987553 3566666665
No 124
>KOG2304|consensus
Probab=98.42 E-value=2.7e-07 Score=82.40 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=105.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-----------C-C-----C-----------c-c
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-----------P-M-----D-----------F-A 114 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-----------~-~-----g-----------~-~ 114 (341)
.+.++|||+|.||+.||+--+.+|+ +|+++|+++..+.+..+ + + + + .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGL----NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCC----ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4679999999999999999999995 99999999876554321 1 1 0 1 2
Q ss_pred ccChHHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCC
Q psy316 115 LNDNHRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPN 192 (341)
Q Consensus 115 ~~s~~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn 192 (341)
+++..+++.++|+||-++-. +.-+++++++ .... ++++++.+..+.+.+..+...+. ...+ +...+--
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l-~~~a--k~~~il~tNTSSl~lt~ia~~~~------~~sr-f~GlHFf 156 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDL-DKIA--KSSTILATNTSSLSLTDIASATQ------RPSR-FAGLHFF 156 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHH-Hhhc--ccceEEeecccceeHHHHHhhcc------Chhh-hceeecc
Confidence 34556778889999988743 3344677777 6666 77889998888888998887776 3345 5544433
Q ss_pred chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 193 TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 193 ~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.|..+-+-+- +...+..++ +.+..+..+-..+|+..+
T Consensus 157 NPvPvMKLvE-Vir~~~TS~--eTf~~l~~f~k~~gKttV 193 (298)
T KOG2304|consen 157 NPVPVMKLVE-VIRTDDTSD--ETFNALVDFGKAVGKTTV 193 (298)
T ss_pred CCchhHHHhh-hhcCCCCCH--HHHHHHHHHHHHhCCCce
Confidence 3333333222 233445666 889999999999998654
No 125
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.38 E-value=1.4e-06 Score=82.72 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
-.++|||||+|+||+.+++.+..-|. +|++|+|+... .++ ...+.++++++||+|++++|. ...+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~~r~~~~-------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM----NIYAYTRSYVN-------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCcc-------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 45899999999999999998776674 99999997421 133 245789999999999999995 44555
Q ss_pred HHH-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|++.-|- ..+.|.+.+.
T Consensus 190 li~~~~-l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 190 MINSKM-LSLF--RKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred CcCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 552 23 3346 7899999887553 3456666665
No 126
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.33 E-value=5.9e-07 Score=75.25 Aligned_cols=69 Identities=28% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc---cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+++.|||+|.+|++++..|.+.|. .+|++++|+.++++.+.+++ .+ ...+..+.+.++|+||-|+|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGA---KEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTS---SEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC---CEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 4789999999999999999999995 57999999999999887755 22 3455666788999999999854
No 127
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.31 E-value=4.6e-06 Score=77.45 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+ |+||+.+++.+.+.. ..++ .++++++++.... .++++ ...+..+++.++|+|+.+++|....+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~---~~elvav~d~~~~~~~~~-~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~ 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE---DLELVAAVDRPGSPLVGQ-GALGVAITDDLEAVLADADVLIDFTTPEATLENL 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCcccccc-CCCCccccCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 69999998 999999998887642 1244 5689887766555 44667 6778888888899999999998887777
Q ss_pred HHhhhcccccCCCc-EEEEecCCCCHHHHHHh
Q psy316 142 QGLVNDKVTLNSSR-CIISMLVGVDLETLKKK 172 (341)
Q Consensus 142 ~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~ 172 (341)
... + ..++ +|+. ..|.+.++..++
T Consensus 78 ~~a----l--~~G~~vvig-ttG~s~~~~~~l 102 (257)
T PRK00048 78 EFA----L--EHGKPLVIG-TTGFTEEQLAEL 102 (257)
T ss_pred HHH----H--HcCCCEEEE-CCCCCHHHHHHH
Confidence 654 2 3343 5554 567787665543
No 128
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.31 E-value=1.1e-06 Score=83.98 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCC---C--c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPM---D--F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~---g--~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+|+|||+|.||..+++.+.. .+ ..+|++|+|++++++.+.+++ | + ...+.++++.++|+|+.|++..
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~---~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRP---IKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCC---CCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 689999999999999987765 33 368999999999988877643 4 4 5677888999999998888865
Q ss_pred HHHHHHhhhcccccCCCcEEEE
Q psy316 138 DSAIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs 159 (341)
..++.. ..+ ++++.|..
T Consensus 201 ~pvl~~---~~l--~~g~~i~~ 217 (314)
T PRK06141 201 EPLVRG---EWL--KPGTHLDL 217 (314)
T ss_pred CCEecH---HHc--CCCCEEEe
Confidence 344421 235 67774443
No 129
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.29 E-value=1.9e-06 Score=87.90 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+|+.|...|. +|++|+|+... +...+ +|+ ...++++++++||+|++++|. ...+.+
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~-~~~~~-~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~l 210 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAYDPYISP-ERAEQ-LGVELVDDLDELLARADFITVHTPLTPETRGL 210 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCh-hHHHh-cCCEEcCCHHHHHhhCCEEEEccCCChhhccC
Confidence 35789999999999999999998884 99999985221 12222 466 456789999999999999995 355666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|+++-|- +.+.|.+.+.
T Consensus 211 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 211 IGAEE-LAKM--KKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred cCHHH-HhcC--CCCeEEEEcCCCceeCHHHHHHHHH
Confidence 5 233 3356 7899999987553 3456666554
No 130
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.27 E-value=2.2e-06 Score=84.01 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=59.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~ 133 (341)
.+++.|||+|-||...+++|..+|. .+|++.||+.++++.|++++|. ..++..+.+.++|+||.|+-
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~---~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV---KKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC---CEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 4689999999999999999999995 6999999999999999998885 45666778899999999984
No 131
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.27 E-value=2.3e-06 Score=87.31 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|...|. +|++|+|+... +.... .|+ .. +..+++++||+|++++|. ...+.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~-~~~~~-~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~l 211 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAYDPYISP-ERAAQ-LGVELV-SLDELLARADFITLHTPLTPETRGL 211 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCh-hHHHh-cCCEEE-cHHHHHhhCCEEEEccCCChHhhcC
Confidence 45789999999999999999998885 99999985422 22222 466 44 789999999999999995 455666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|++.-|- +.+.|.+.+.
T Consensus 212 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 212 IGAEE-LAKM--KPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCHHH-HhcC--CCCeEEEECCCCceeCHHHHHHHHh
Confidence 6 344 4456 7899999987553 3456666554
No 132
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.26 E-value=7.2e-06 Score=75.81 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=63.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHH-hhcCCEEEEeeChHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRI-IKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~-~~~aDvIilaV~~~~v~~ 139 (341)
|.+||||||+|+||+.+++.|.+.+. ...+ +.+++|++++.+.+.+. + .+.+++++ ..++|+|+-|-.++.+++
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~~~~~~~~~~~~~~--~~~~~~l~~ll~~~~DlVVE~A~~~av~e 77 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAA-QPCQLAALTRNAADLPPALAGR--VALLDGLPGLLAWRPDLVVEAAGQQAIAE 77 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEecCCHHHHHHhhcc--CcccCCHHHHhhcCCCEEEECCCHHHHHH
Confidence 67899999999999999999865432 2234 45788888888887663 5 67788886 578999999999999999
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
....+
T Consensus 78 ~~~~i 82 (267)
T PRK13301 78 HAEGC 82 (267)
T ss_pred HHHHH
Confidence 88776
No 133
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.26 E-value=6e-06 Score=68.15 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=64.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChh-hhh----hcCc--CCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSER-FKL----HWPE--PMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e-~~~----~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
|||+++|+ |+||+.+++.+.+.. ..++ .+++|++. ... .+.. ..++ ...+.++++..+|+||-.+.|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~---~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP---GFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST---TEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC---CcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCCh
Confidence 68999999 999999999999843 1354 46777762 111 1111 2355 678888999899999999988
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
+.+.+.++.. . ..+.-+|..+.|.+.++++.
T Consensus 78 ~~~~~~~~~~-~-----~~g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 78 DAVYDNLEYA-L-----KHGVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp HHHHHHHHHH-H-----HHT-EEEEE-SSSHHHHHHH
T ss_pred HHhHHHHHHH-H-----hCCCCEEEECCCCCHHHHHH
Confidence 8887777655 2 23556666678888655443
No 134
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.24 E-value=5e-06 Score=78.84 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.+|++|||+|.+|..++..|...|. +|++++|++++.+...+ +|. . ..+..+.+.++|+||.++|+..+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~~r~~~~~~~~~~-~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~-- 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA----NVTVGARKSAHLARITE-MGLSPFHLSELAEEVGKIDIIFNTIPALVLT-- 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-cCCeeecHHHHHHHhCCCCEEEECCChhhhh--
Confidence 5799999999999999999999884 99999999887666554 565 2 235567788999999999875432
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++. ...+ +++.+||++..
T Consensus 225 -~~~-l~~~--~~g~vIIDla~ 242 (296)
T PRK08306 225 -KEV-LSKM--PPEALIIDLAS 242 (296)
T ss_pred -HHH-HHcC--CCCcEEEEEcc
Confidence 222 3345 67889998764
No 135
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.24 E-value=2.6e-06 Score=81.83 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=66.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc---CCC--c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE---PMD--F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~---~~g--~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++||||+|.+|...++.|... .+..+|++|+|++++++.+.+ ++| + .+.+.++++.+||+|+.|+|...
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~-- 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK-- 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 6899999999999988888663 345799999999999877654 245 3 57889999999999999998642
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|.++
T Consensus 205 P~~~---~~~l--~~g~~v~~v 221 (325)
T TIGR02371 205 PVVK---ADWV--SEGTHINAI 221 (325)
T ss_pred cEec---HHHc--CCCCEEEec
Confidence 3332 1235 678776665
No 136
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.23 E-value=4e-06 Score=80.34 Aligned_cols=102 Identities=24% Similarity=0.298 Sum_probs=75.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
..+++||||+|++|+.+++.+..-|. +|.+||+ +++... ...+. ...++++++++||+|.+.+|- ...+.
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~d~~~~~~~~---~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGYDPYSPRERA---GVDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC----eEEEECCCCchhhh---ccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 46899999999999999999999886 9999999 333222 11244 567899999999999999984 45566
Q ss_pred HHH-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|.++=|- +.+.|.+.+.
T Consensus 214 ~i~~~~-~a~M--K~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 214 LINAEE-LAKM--KPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred ccCHHH-HhhC--CCCeEEEECCCcceecHHHHHHHHH
Confidence 663 22 2345 7888999987553 3456666555
No 137
>PLN02928 oxidoreductase family protein
Probab=98.23 E-value=4.5e-06 Score=80.84 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----C----cCC---CccccChHHHhhcCCEEEEe
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----P----EPM---DFALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~----~~~---g~~~~s~~e~~~~aDvIila 131 (341)
..+++||||+|+||+.+|+.|..-|. +|++|+|+....... . ..+ .....+..+++++||+|+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV----KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC----EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 45799999999999999999998885 999999973221110 0 000 11345788999999999999
Q ss_pred eCh-HHHHHHHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 132 MKP-QYLDSAIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 132 V~~-~~v~~vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+|- ...+.++. +. ...+ +++.++|++.-| ++.+.|.+.+.
T Consensus 234 lPlt~~T~~li~~~~-l~~M--k~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 234 CTLTKETAGIVNDEF-LSSM--KKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCCChHhhcccCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 984 34444542 23 3446 789999998755 33456666665
No 138
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=8.2e-05 Score=66.87 Aligned_cols=204 Identities=11% Similarity=0.006 Sum_probs=117.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+.++|||.|++|.+....-.+.+. .. .+..|++.+++.|.+.++..-.+.+...+-.+++|.-+|...+..+..
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa 85 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVV----ACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAA 85 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchhe----eehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHH
Confidence 3679999999999984433333221 22 356789999888887554422233344455688888888886666664
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-----h--cCceEEEEeCCCCCccHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-----Y--GKGITGMCHDVHLDKESE 215 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-----v--~~g~~~l~~~~~~~~~~~ 215 (341)
.. . . ++++++++|++--+.+.+...-. .++- -..++|+...+ . -.+. ++. .-..++ -
T Consensus 86 ~~-~--~--rpg~iv~HcSga~~~~il~~~gr------~g~~-~asiHP~f~Fsgl~edl~rl~d~-~~~-i~eaD~--~ 149 (289)
T COG5495 86 TS-L--N--RPGTIVAHCSGANGSGILAPLGR------QGCI-PASIHPAFSFSGLDEDLSRLKDT-IFG-ITEADD--V 149 (289)
T ss_pred hc-c--c--CCCeEEEEccCCCchhhhhhhhh------cCCc-ceeecccccccCCHHHHHhCccc-EEE-eecccc--c
Confidence 43 2 3 68999999976555665554322 2333 34566653211 1 1121 111 112223 4
Q ss_pred HHHHHHHHHHhcCCe-EEcCCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 216 HLNMAIKIMEQGGIV-EIIPES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~-~~v~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.+..++.|...+|.. +.+.++ .++....++++. .+..+.+++ +.-...|+|+-+..--+...+.|+....++
T Consensus 150 g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf--~v~~l~~a~-~i~~aag~Dq~e~iv~~~pL~~g~~~n~~q 225 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNF--IVTVLADAL-EIYRAAGDDQPELIVEVGPLARGALENTLQ 225 (289)
T ss_pred ccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhcc--HHHHHHHHH-HHHHHhcCCCcceeeeehHHHHHHHHHHHH
Confidence 567889999999875 445443 445555555432 222222222 222467888655443345577888777766
No 139
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.20 E-value=4.1e-06 Score=81.94 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-----HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-----YLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-----~v~ 138 (341)
.++|||||+|+||+.+++.+...|. +|.+||+..... . .+....+.++++++||+|++++|-. ...
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~----~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGW----KVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 4789999999999999999999885 999999853321 1 1123457889999999999999842 233
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.++ .+. ...+ +++.++|+++-|-- .+.|.+.+.
T Consensus 187 ~li~~~~-l~~m--k~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 187 HLLDEAF-LASL--RPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred ccCCHHH-HhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 344 222 3345 78999999876643 455555553
No 140
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.14 E-value=9.5e-06 Score=77.74 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..+++||||+|++|+++|+.+..-| -+|..|+|++. ....++.+....+..+++++||+|.+.+|. ..-..++
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fg----m~v~y~~~~~~--~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLi 218 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFG----MKVLYYDRSPN--PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLI 218 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCC----CEEEEECCCCC--hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhc
Confidence 4689999999999999999988444 48999999864 222222345223489999999999999995 4455555
Q ss_pred H-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|.+.=|- +.+.+.+.+.
T Consensus 219 n~~~-l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 219 NAEE-LAKM--KPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred CHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 2 22 2345 7888999887553 3455555554
No 141
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.13 E-value=8.8e-06 Score=72.77 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYL-DSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v-~~v 140 (341)
.++|+|+|+|+||..+++.|.+.|+ +|+++|+++++++.+.++++. .. +..++.. ++|+++.|.....+ .+.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGA----KLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCALGGVINDDT 102 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEecccccccCHHH
Confidence 3789999999999999999999995 999999999988887775666 33 3345544 89999977554322 233
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCH-HHHHHhcc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLS 174 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~ 174 (341)
++++ + .++|+.-.++-.. ..-.+.|.
T Consensus 103 ~~~l-------~-~~~v~~~AN~~~~~~~~~~~L~ 129 (200)
T cd01075 103 IPQL-------K-AKAIAGAANNQLADPRHGQMLH 129 (200)
T ss_pred HHHc-------C-CCEEEECCcCccCCHhHHHHHH
Confidence 3433 3 4577776665333 33334443
No 142
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.11 E-value=8.6e-06 Score=79.52 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-----HH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-----LD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-----v~ 138 (341)
.++|||||+|+||+.+++.|..-|. +|.+||+.... . . ......+.++++++||+|++.+|-.. ..
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~dp~~~~--~--~-~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGI----KTLLCDPPRAD--R--G-DEGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCcccc--c--c-cccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 4799999999999999999998885 99999974321 1 1 11234578999999999999998321 22
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.++ ++. ...+ +++.++|+++=| ++.+.|.+.+.
T Consensus 187 ~li~~~~-l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 187 HLADEKL-IRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred cccCHHH-HhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 333 222 3345 789999998755 33456655554
No 143
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.11 E-value=8.8e-06 Score=77.35 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cC---CC--c--c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EP---MD--F--A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~---~g--~--~-~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|.||..++..+...|+ . +|.++|+++++++... .. .+ . . ..+. +.+++||+||+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL--G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 799999999999999999998874 2 8999999876654211 10 01 1 1 2343 5689999999996
Q ss_pred --Ch--------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --KP--------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~~--------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|. ..++++++++ .++. ++.++|..++.++.
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i-~~~~---~~~~viv~tNP~d~ 124 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGI-KKYA---PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHHH
Confidence 22 2356666777 6654 55666666666553
No 144
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.09 E-value=1.1e-05 Score=77.03 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
+..+++||||+|++|+.+|+.+..-|. +|..|+|+.... . .++...+.++++++||+|++++|- ...+.+
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~d~~~~~~----~-~~~~~~~l~ell~~sDvv~lh~Plt~~T~~l 213 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYYSTSGKNK----N-EEYERVSLEELLKTSDIISIHAPLNEKTKNL 213 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEECCCcccc----c-cCceeecHHHHhhcCCEEEEeCCCCchhhcc
Confidence 346899999999999999999877674 899999864221 1 233344789999999999999994 344444
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. -..+ +++.++|+++=| ++.+.|.+.|.
T Consensus 214 i~~~~-~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 214 IAYKE-LKLL--KDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cCHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 42 22 2345 789999998755 34566666665
No 145
>PLN00203 glutamyl-tRNA reductase
Probab=98.09 E-value=7.3e-06 Score=83.20 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-----cccChHHHhhcCCEEEEeeC---h
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-----ALNDNHRIIKEAEYVFLAMK---P 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-----~~~s~~e~~~~aDvIilaV~---~ 134 (341)
.++|+|||+|.||..++++|...|. .+|++++|++++++.+.++++ . ...+..+.+.++|+||.|++ |
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC---TKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 4689999999999999999999884 579999999999988876552 2 23456677889999999985 3
Q ss_pred HHHHHHHHHhhhcccc-cCCCcEEEEecC
Q psy316 135 QYLDSAIQGLVNDKVT-LNSSRCIISMLV 162 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~-~~~~~iIVs~~a 162 (341)
-...+.++.+ .+.-. .....++|+++-
T Consensus 343 vI~~e~l~~~-~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 343 LFLKEHVEAL-PPASDTVGGKRLFVDISV 370 (519)
T ss_pred eeCHHHHHHh-hhcccccCCCeEEEEeCC
Confidence 3345566555 32100 012247888743
No 146
>KOG0069|consensus
Probab=98.09 E-value=1.2e-05 Score=76.65 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
++.++|||+|+|++|+.+|++|..-| ..|.-+.|++...+...+ ++....+..+.+.++|+|++|+|- .....+
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg----~~i~y~~r~~~~~~~~~~-~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG----CVILYHSRTQLPPEEAYE-YYAEFVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc----ceeeeecccCCchhhHHH-hcccccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 46789999999999999999998855 356677776655444333 333345778999999999999995 456666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ +++ -..+ +++.+||++.=|- ..+.+.+.+.
T Consensus 235 iNk~~-~~~m--k~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 235 INKKF-IEKM--KDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hhHHH-HHhc--CCCeEEEeccccccccHHHHHHHHh
Confidence 6 334 4456 7888999987553 3455666665
No 147
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.09 E-value=1.3e-05 Score=76.95 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=72.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
...+++||||+|++|+.+++.+. .-|. +|..++|.... +.. .++++...+.++++++||+|++++|- ...+.
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~~~~~~~-~~~-~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYNARRHHK-EAE-ERFNARYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEECCCCch-hhH-HhcCcEecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 34689999999999999999886 5553 88889986321 111 12455334889999999999999984 34455
Q ss_pred HHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|+++=| ++.+.|.+.+.
T Consensus 217 li~~~~-l~~m--k~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 217 LFGAEQ-FAKM--KSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred ccCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 552 22 3345 789999998755 33566666665
No 148
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.08 E-value=1.7e-05 Score=78.58 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..+++||||+|++|+.+|+.+..-|. +|..|+|++... . .++ ...+.++++++||+|.+++|- ...+.+
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~d~~~~~~----~-~~~~~~~~l~ell~~sDiVslh~Plt~~T~~l 220 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM----RVYFYDIEDKLP----L-GNARQVGSLEELLAQSDVVSLHVPETPSTKNM 220 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCCcccc----c-CCceecCCHHHHHhhCCEEEEcCCCChHHhhc
Confidence 45899999999999999999988885 999999864321 1 133 445889999999999999994 445555
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. ...+ +++.++|+++-| ++.+.|.+.+.
T Consensus 221 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 221 IGAEE-LALM--KPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred cCHHH-HhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 52 23 3446 789999998755 33456666554
No 149
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.06 E-value=1.3e-05 Score=65.66 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=60.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCC-c--c---ccChHHH-hhcCCEEEEeeChHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMD-F--A---LNDNHRI-IKEAEYVFLAMKPQY 136 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g-~--~---~~s~~e~-~~~aDvIilaV~~~~ 136 (341)
||+|||+ |.+|..++..|.++.. .++. ++.|+.++.+.+...++ + . ..+..+. ..++|+||+|+|+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~---~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD---FEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC---ceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH
Confidence 6999995 9999999999988521 2554 44655433333322221 1 0 0111111 248999999999998
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
..+++..+ .+.+ .+++++|++.+..
T Consensus 78 ~~~~~~~~-~~~~--~~g~~viD~s~~~ 102 (122)
T smart00859 78 SKEIAPLL-PKAA--EAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHH-Hhhh--cCCCEEEECCccc
Confidence 88887666 5556 6899999986654
No 150
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.05 E-value=1.3e-05 Score=76.34 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=66.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
+||+|||+|.+|++++..|+..|. .++|.++||++++++.+..++ .. ......+.+.+||+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 489999999999999999999884 358999999988877655432 11 222334568899999999842
Q ss_pred ----H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 ----Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ----~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ .++ .++.+|+..++.++
T Consensus 79 ~~~~g~~R~dll~~N~~i~~~~~~~i-~~~---~~~~~vivvsNP~d 121 (306)
T cd05291 79 PQKPGETRLDLLEKNAKIMKSIVPKI-KAS---GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEecChHH
Confidence 1 134444555 544 35667776766554
No 151
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.6e-05 Score=75.07 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|+|||.| .||..|+..|+++|. +|++|+|... ++.+++++||+||.|++. ..+.+..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~ 220 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHC----SVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW 220 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC----EEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh
Confidence 5899999996 999999999999984 9999987521 567888999999999964 4443332
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
+ +++.+||++
T Consensus 221 -------i--k~GaiVIDv 230 (301)
T PRK14194 221 -------L--KPGAVVIDV 230 (301)
T ss_pred -------c--cCCcEEEEe
Confidence 4 788899987
No 152
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.00 E-value=1.1e-05 Score=68.11 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=64.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV- 132 (341)
|||+|||+ |++|+.++..|...++ ..++.++|+++++++....++ .. ...+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 69999999 9999999999999886 458999999977665433221 12 3335567789999999986
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. .++++.+.+ ..+ .++.+++-.++.++
T Consensus 79 ~~~~~g~sR~~ll~~N~~i~~~~~~~i-~~~---~p~~~vivvtNPvd 122 (141)
T PF00056_consen 79 VPRKPGMSRLDLLEANAKIVKEIAKKI-AKY---APDAIVIVVTNPVD 122 (141)
T ss_dssp TSSSTTSSHHHHHHHHHHHHHHHHHHH-HHH---STTSEEEE-SSSHH
T ss_pred ccccccccHHHHHHHhHhHHHHHHHHH-HHh---CCccEEEEeCCcHH
Confidence 221 123333444 443 46667776767655
No 153
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.00 E-value=7.6e-06 Score=81.02 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c---cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+||.|||+|.||..++.+|...|. .+|++++|+.++++.+.++++ . ...+..+.+.++|+||.|++..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP---KQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 4689999999999999999999884 589999999999999888765 3 2345567788999999999743
No 154
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.99 E-value=1.3e-05 Score=76.38 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=65.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc--cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF--ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~--~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++++|||+|.+|...+..+.... +..+|.+|+|++++++.+.+++ ++ ...+.++++.++|+|+.|+|... .
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~--~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--P 201 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL--PVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--P 201 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--c
Confidence 68999999999999999997632 2368999999999988876654 33 34677888999999999999763 3
Q ss_pred HHHHhhhcccccCCCcEEEEe
Q psy316 140 AIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~ 160 (341)
++. ..+ ++++.|..+
T Consensus 202 l~~----~~~--~~g~hi~~i 216 (304)
T PRK07340 202 VYP----EAA--RAGRLVVAV 216 (304)
T ss_pred eeC----ccC--CCCCEEEec
Confidence 332 235 678766655
No 155
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.99 E-value=2.4e-05 Score=74.82 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=70.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..+++||||+|++|+.+++.+..-|. +|..|+|.... .. .....+.++++.+||+|++++|- ...+.++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~~~~~~~--~~----~~~~~~l~ell~~sDiv~l~~Plt~~T~~li 215 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM----KVLYAEHKGAS--VC----REGYTPFEEVLKQADIVTLHCPLTETTQNLI 215 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC----EEEEECCCccc--cc----ccccCCHHHHHHhCCEEEEcCCCChHHhccc
Confidence 45899999999999999999877774 89999875321 11 11234788999999999999993 4445555
Q ss_pred H-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|++.=| ++.+.|.+.+.
T Consensus 216 ~~~~-l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 216 NAET-LALM--KPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 2 22 3345 789999998755 34566766665
No 156
>PLN02306 hydroxypyruvate reductase
Probab=97.96 E-value=3.7e-05 Score=75.47 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhh-hhhcCcCCC------------c-cccChHHHhhcCCE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERF-KLHWPEPMD------------F-ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~-~~~l~~~~g------------~-~~~s~~e~~~~aDv 127 (341)
..++|||||+|++|+.+|+.+. .-|. +|..|+|++.. .+.....++ . ...+.++++++||+
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi 239 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV 239 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence 4579999999999999999885 4453 89999987532 111111111 1 23578999999999
Q ss_pred EEEeeCh-HHHHHHHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 128 VFLAMKP-QYLDSAIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 128 IilaV~~-~~v~~vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
|++++|- ...+.++. +. ...+ +++.++|.+.=| ++.+.|.+.+.
T Consensus 240 V~lh~Plt~~T~~lin~~~-l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKER-LALM--KKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred EEEeCCCChhhhhhcCHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 9999984 44555552 22 3346 789999998755 33456666554
No 157
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.94 E-value=1.1e-05 Score=80.26 Aligned_cols=68 Identities=25% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
.++|+|||+|.||..+++.|...|. .+|++++|++++++.+++++|. ...+..+.+..+|+||.|++.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGV---RKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCC---CeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC
Confidence 4789999999999999999998884 5899999999998877776664 234556678899999999974
No 158
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.94 E-value=2.6e-05 Score=63.91 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=60.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCC-------c-cccChHHHhhcCCEEEEeeChH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMD-------F-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g-------~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
||+||| +|.+|+.+.+.|.++- ..+ +.++.++...-+.+...++ . ......+.+.++|+||+|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp---~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP---DFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS---TEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCC---CccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh
Confidence 799999 8999999999998843 234 4566666522223322221 1 1222345568999999999999
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
...+....+ + .++..||++++..
T Consensus 78 ~~~~~~~~~----~--~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 78 ASKELAPKL----L--KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHH----H--HTTSEEEESSSTT
T ss_pred HHHHHHHHH----h--hCCcEEEeCCHHH
Confidence 888888766 3 4677899886643
No 159
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.93 E-value=3.9e-05 Score=73.05 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh-h---cCc-----CCC--c-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL-H---WPE-----PMD--F-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~-~---l~~-----~~g--~-~~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|.||..+|..+...|+ .+|.++|++++..+ . +.+ ... + .+.+.++ +++||+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~---~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL---ADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 689999999999999999998884 26999998655333 1 111 011 2 2345544 78999999998
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. + +.++++++++ .++. ++.+||..++.++.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I-~~~~---p~~~iIv~tNP~di 123 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRI-MEHS---PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHHH
Confidence 5 1 2245556666 6554 56677878787664
No 160
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.92 E-value=2.3e-05 Score=75.32 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=64.5
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCC----Cc---cccChHHHhhcCCEEEEeeChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPM----DF---ALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~----g~---~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.+++|||+|.+|...+..|.. .+. .+|++|+|++++++.+.+++ |+ ...+.++++.++|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDI---RSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCc---cEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 589999999999999999974 332 58999999999988776532 54 35678888999999999998643
Q ss_pred HHHHHHHhhhcccccCCCcEEEEe
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++.. ..+ +++..|..+
T Consensus 207 --p~i~~---~~l--~~g~~i~~v 223 (326)
T TIGR02992 207 --PILHA---EWL--EPGQHVTAM 223 (326)
T ss_pred --cEecH---HHc--CCCcEEEee
Confidence 33321 135 677666654
No 161
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.92 E-value=3.5e-05 Score=73.77 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
+..+++||||+|++|+.+|+.+..-|. +|..|+|.... . .....+.++++++||+|++++|- ...+.+
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~~~~~~~-~------~~~~~~l~ell~~sDiv~l~lPlt~~T~~l 214 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM----RVLIGQLPGRP-A------RPDRLPLDELLPQVDALTLHCPLTEHTRHL 214 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEECCCCCc-c------cccccCHHHHHHhCCEEEECCCCChHHhcC
Confidence 346899999999999999999987774 89999986321 1 12223788999999999999994 445555
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. -..+ +++.++|++.=| ++.+.|.+.+.
T Consensus 215 i~~~~-~~~m--k~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 215 IGARE-LALM--KPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 52 22 3345 789999998755 33456666665
No 162
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=2.5e-05 Score=74.98 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|.+|...+..+.... +..+|.+|+|++++++.+.++ +++ .+.+.++++.++|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~- 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT- 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC-
Confidence 68999999999999998876431 236899999999998877652 344 45677888999999999998653
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++.+ .+ ++|+.|+++
T Consensus 205 -p~i~~----~l--~~G~hV~~i 220 (325)
T PRK08618 205 -PVFSE----KL--KKGVHINAV 220 (325)
T ss_pred -cchHH----hc--CCCcEEEec
Confidence 33322 24 678777766
No 163
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.90 E-value=3.7e-05 Score=66.07 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~vl 141 (341)
.+++.++|+|..|+.+|+.|...|. +|+|++++|-++-+... .|..+.+.++++..+|++|.++-...+ .+-+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~e~DPi~alqA~~-dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~ 97 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGA----RVTVTEIDPIRALQAAM-DGFEVMTLEEALRDADIFVTATGNKDVITGEHF 97 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-----EEEEE-SSHHHHHHHHH-TT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCC----EEEEEECChHHHHHhhh-cCcEecCHHHHHhhCCEEEECCCCccccCHHHH
Confidence 3689999999999999999999995 99999999987655544 277444678999999999999976542 3444
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
.++ +++.++.+.
T Consensus 98 ~~m-------kdgail~n~ 109 (162)
T PF00670_consen 98 RQM-------KDGAILANA 109 (162)
T ss_dssp HHS--------TTEEEEES
T ss_pred HHh-------cCCeEEecc
Confidence 444 567666654
No 164
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.88 E-value=4e-05 Score=73.36 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=60.7
Q ss_pred CCCeEEEEcccHHH-HHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhc--CCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMA-QAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKE--AEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG-~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~--aDvIilaV~~~~v 137 (341)
+++||||||+|.++ ...+..+.+.+.. ..-+.+++|++++++.+.+++|+ .++|.++++++ .|+|++|+|+..-
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 46799999999666 4577777776520 13467899999999999988887 67788898875 5999999998765
Q ss_pred HHHH
Q psy316 138 DSAI 141 (341)
Q Consensus 138 ~~vl 141 (341)
.++.
T Consensus 81 ~e~~ 84 (342)
T COG0673 81 AELA 84 (342)
T ss_pred HHHH
Confidence 5555
No 165
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.88 E-value=5.1e-05 Score=70.85 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCC--hhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPS--ERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~--~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+||||||+|+||+.+++.|.+... .++ .++++. .++...... .++ .+.+.+++..+.|+|+.|+++..+.+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~---~~l~~v~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPD---LRVDWVIVPEHSIDAVRRALG-EAVRVVSSVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCC---ceEEEEEEcCCCHHHHhhhhc-cCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence 699999999999999999887531 233 344442 222222211 145 566777664569999999999887777
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
....
T Consensus 78 ~~~a 81 (265)
T PRK13303 78 VVPI 81 (265)
T ss_pred HHHH
Confidence 6655
No 166
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.87 E-value=1.9e-05 Score=78.37 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
..+++|||+|.||..+++.|...|. .+|++++|++++++.+.+++|. ...+..+.+..+|+||.|++.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV---GKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC
Confidence 4789999999999999999999884 5899999999988777665554 234566778899999999963
No 167
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.86 E-value=8.7e-05 Score=69.30 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=64.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeE-EEEcCC-hhhh----hhcCc--CCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQI-IASAPS-ERFK----LHWPE--PMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V-~v~~r~-~e~~----~~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
+||+|+| +|+||..+++.+.+.. ..++ .+++|. ++.. ..+.. ..|+ .+.+.+++...+|+||.+++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~---~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE---GLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 6999999 6999999999988642 1244 567853 2221 11111 1345 566777765579999999999
Q ss_pred HHHHHHHHHhhhcccccCCCc-EEEEecCCCCHHHHHHh
Q psy316 135 QYLDSAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKKK 172 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~ 172 (341)
....+.+... + ..++ +|+.. .|.+.++.+++
T Consensus 79 ~~~~~~~~~a----l--~~g~~vVigt-tg~~~e~~~~l 110 (266)
T TIGR00036 79 EGVLNHLKFA----L--EHGVRLVVGT-TGFSEEDKQEL 110 (266)
T ss_pred HHHHHHHHHH----H--HCCCCEEEEC-CCCCHHHHHHH
Confidence 9888877665 2 3333 55544 58887665544
No 168
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.85 E-value=5e-05 Score=74.15 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--Cc--------cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--DF--------ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--g~--------~~~s~~e~~~~aDvIilaV~ 133 (341)
+|||.|||+|.+|+.++..|.++|- .+|++.+|++++++++.+.. .+ ......+++++.|+||-|.|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d---~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD---GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4789999999999999999999983 69999999999988876532 11 12234577889999999999
Q ss_pred hHHHHHHHHH
Q psy316 134 PQYLDSAIQG 143 (341)
Q Consensus 134 ~~~v~~vl~~ 143 (341)
+..-..+++.
T Consensus 78 ~~~~~~i~ka 87 (389)
T COG1748 78 PFVDLTILKA 87 (389)
T ss_pred chhhHHHHHH
Confidence 8876666644
No 169
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.83 E-value=5.4e-05 Score=72.56 Aligned_cols=94 Identities=16% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--c-----CcCCC--c--c-ccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--W-----PEPMD--F--A-LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l-----~~~~g--~--~-~~s~~e~~~~aDvIila 131 (341)
.+||+|||+|+||..++..+...|+ .+|.++|+++++++. + ....+ . . ..+. +.+++||+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL---GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC---CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence 4699999999999999999888884 479999998765432 1 11012 1 2 2343 478999999999
Q ss_pred e--C--h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 M--K--P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V--~--~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. + + ..++++.+.+ .++. ++.+++-.++.++
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i-~~~~---p~a~vivvsNP~d 126 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESV-KKYC---PNAFVICVTNPLD 126 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecChHH
Confidence 8 2 3 3456677777 6654 6666666667654
No 170
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.82 E-value=7.4e-05 Score=74.64 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~-~vl 141 (341)
.++++|||+|.+|..+++.+...|. +|+++++++.+...... .|+...+..++++.+|+|++++.... +. +.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~e~dp~~a~~A~~-~G~~~~~leell~~ADIVI~atGt~~iI~~e~~ 328 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGA----RVVVTEIDPICALQAAM-EGYQVVTLEDVVETADIFVTATGNKDIITLEHM 328 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhHHHHHh-cCceeccHHHHHhcCCEEEECCCcccccCHHHH
Confidence 4789999999999999999998884 89999998876644333 36633467888999999999985433 21 233
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
. .+ +++.+|+++.-+
T Consensus 329 ~-----~M--KpGAiLINvGr~ 343 (476)
T PTZ00075 329 R-----RM--KNNAIVGNIGHF 343 (476)
T ss_pred h-----cc--CCCcEEEEcCCC
Confidence 3 34 778888887444
No 171
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.79 E-value=5e-05 Score=72.17 Aligned_cols=87 Identities=9% Similarity=0.146 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|..|...++.+... .+-.+|.+|+|++++++++.++ +|+ .+.+.++++.+||||+.|++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV--YNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 6899999999999999988874 3557999999999998876543 353 56789999999999999998653
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|..+
T Consensus 195 -P~~~---~~~l--~pg~hV~ai 211 (301)
T PRK06407 195 -PIFN---RKYL--GDEYHVNLA 211 (301)
T ss_pred -cEec---HHHc--CCCceEEec
Confidence 4442 2245 677555544
No 172
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.79 E-value=9.7e-05 Score=70.44 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=49.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcCC----Cc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEPM----DF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~~----g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|.+|.+++..|...|. .++|.++|+++++++. +.... .. ...+..+.+++||+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 589999999999999999999884 3589999999876653 22110 11 12233466899999999985
No 173
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.78 E-value=5.9e-05 Score=72.59 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++++|||+|.+|.+.+..|.... +..+|++|+|++++++.+.++ +|+ ...+.++++.++|+|+.|+|..
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~--~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR--PIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 68999999999999999987532 126899999999998887653 344 3577788899999999999865
No 174
>PRK06046 alanine dehydrogenase; Validated
Probab=97.77 E-value=5.1e-05 Score=72.90 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|.+|...++.+.... +-..|.+|+|++++++++.++ ++. ...+.++++. +|+|+.|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVF--DLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 68999999999999999987542 346899999999988876653 243 4567788886 999999999753
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ ++++.|.++
T Consensus 206 -P~~~---~~~l--~~g~hV~~i 222 (326)
T PRK06046 206 -PVVK---AEWI--KEGTHINAI 222 (326)
T ss_pred -cEec---HHHc--CCCCEEEec
Confidence 4432 2235 678776665
No 175
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.76 E-value=0.00013 Score=70.10 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=62.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--hc-----CcCCC--c--c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--HW-----PEPMD--F--A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--~l-----~~~~g--~--~-~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|+||..++..+...|+ .+|.++|++++.++ .+ ....+ . . +.+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl---~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL---GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 699999999999999999988885 36999999887542 11 01012 2 2 3444 6789999999976
Q ss_pred C----h-----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 K----P-----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~----~-----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
- + ..+.++++++ .++. ++.+++..++..+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i-~~~~---p~a~~iv~sNP~d 132 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGI-KKYC---PNAFVIVITNPLD 132 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHH
Confidence 1 1 1245555666 5554 5546666666655
No 176
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=6.3e-05 Score=71.93 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=66.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|...++.+... .+..+|++|+|++++++++.+. .++ .+.+.++++.+||||+.|++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~-- 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV--TDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE-- 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--
Confidence 6899999999999999988764 3567999999999998876542 244 46788999999999999998653
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+++. ..+ +++..|..+
T Consensus 205 P~~~~---~~l--~~G~hi~~i 221 (315)
T PRK06823 205 PLLQA---EDI--QPGTHITAV 221 (315)
T ss_pred ceeCH---HHc--CCCcEEEec
Confidence 44421 235 778777765
No 177
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.0001 Score=69.60 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=55.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-CChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
.++|+||| .|.||..|+..|+++|+ +|++|+ |++ ++++++++||+||.|++. ..+.++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~ 218 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANA----TVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD 218 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCC----EEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh
Confidence 58999999 99999999999999984 999995 653 346778899999999975 433322
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
.+ ++|.+||++
T Consensus 219 -------~l--k~GavVIDv 229 (296)
T PRK14188 219 -------WI--KPGATVIDV 229 (296)
T ss_pred -------ee--cCCCEEEEc
Confidence 25 788999987
No 178
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00023 Score=64.81 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=58.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcCCCc--c--ccChHH----H-hhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDF--A--LNDNHR----I-IKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~~g~--~--~~s~~e----~-~~~aDvIilaV~~ 134 (341)
|+|.|||+|.+|..+|+.|.+.|+ +|.+.++++++.++ +..++.. . ..+..+ + +.++|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 689999999999999999999994 99999999999887 4433443 1 112222 2 5689999999998
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
+....++-.+
T Consensus 77 d~~N~i~~~l 86 (225)
T COG0569 77 DEVNSVLALL 86 (225)
T ss_pred CHHHHHHHHH
Confidence 7777777655
No 179
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.72 E-value=9.6e-05 Score=73.55 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHH--HHHhc-CCCCCCeEEEEcCChhhhhhcCcC-------CC----c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVAT--SLIRT-GLCIPAQIIASAPSERFKLHWPEP-------MD----F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~--~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~-------~g----~-~~~s~~e~~~~aDvIi 129 (341)
+||+|||+|.||.+++. .++.. . .+.++|.+||+++++++..... .+ + .++|..+++++||+||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi 79 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE-LSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVI 79 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC-CCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEE
Confidence 58999999999998665 55433 2 3446999999999887754321 11 2 4567788999999999
Q ss_pred EeeCh
Q psy316 130 LAMKP 134 (341)
Q Consensus 130 laV~~ 134 (341)
.+++.
T Consensus 80 ~ai~~ 84 (423)
T cd05297 80 NTIQV 84 (423)
T ss_pred EeeEe
Confidence 99985
No 180
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.71 E-value=0.00011 Score=70.08 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCCh-hhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSE-RFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~-e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++||+|||+|+||..+++.+.++. .-++ .+++|++ +++. +..++ ...+..+.+.+.|+|++|+|+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p---d~ELVgV~dr~~~~~~~---~~~~v~~~~d~~e~l~~iDVViIctPs~ 71 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP---DMELVGVFSRRGAETLD---TETPVYAVADDEKHLDDVDVLILCMGSA 71 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC---CcEEEEEEcCCcHHHHh---hcCCccccCCHHHhccCCCEEEEcCCCc
Confidence 369999999999999999998752 1255 4789985 4433 22455 4456666778899999999853
No 181
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=5.3e-05 Score=73.26 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---C--c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---D--F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g--~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|...++.+..- .+-.+|++|+|++++++.+.+++ + + .+.+.++++.+||||+.|++...-.
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~v--r~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~ 207 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKAL--LGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA 207 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHh--CCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence 5799999999999998888764 24579999999999988765432 3 3 5678999999999999999754322
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+++. ..+ ++|..|..+
T Consensus 208 Pvl~~---~~l--kpG~hV~aI 224 (346)
T PRK07589 208 TILTD---DMV--EPGMHINAV 224 (346)
T ss_pred ceecH---HHc--CCCcEEEec
Confidence 44432 235 677665544
No 182
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.71 E-value=0.00011 Score=71.12 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------CccccChH-HHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------DFALNDNH-RIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------g~~~~s~~-e~~~~aDvIilaV 132 (341)
|++||+|||+ |.+|..+++.|.++. ..++. +++|. +..+.+.+.+ +....+.. ....++|+||+|+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p---~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP---EVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC---CceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 5689999997 999999999998753 24654 55543 2222222211 11122222 2456799999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhcc
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLS 174 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~ 174 (341)
|.....++...+ + ..++.||+.++..-. +..+++.+
T Consensus 77 P~~~~~~~v~~a----~--~aG~~VID~S~~fR~~~~~~~~~~y~ 115 (343)
T PRK00436 77 PHGVSMDLAPQL----L--EAGVKVIDLSADFRLKDPEVYEKWYG 115 (343)
T ss_pred CcHHHHHHHHHH----H--hCCCEEEECCcccCCCCchhhHHhcC
Confidence 998888887766 3 467899999876644 33445554
No 183
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.71 E-value=0.00015 Score=68.54 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhh-hcCcCCCc-c-ccChHHHhh-----cCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKL-HWPEPMDF-A-LNDNHRIIK-----EAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~-~l~~~~g~-~-~~s~~e~~~-----~aDvIilaV~~ 134 (341)
++||||||+|++|+.++..+.+... .++ .++++++++.. +.++++|+ . ..+.++++. +.|+||++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a 80 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSA 80 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCH
Confidence 4789999999999998888876432 344 57888876422 33445787 4 467777774 58899999999
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
....+..... . ..|+.+|+.
T Consensus 81 ~~H~e~a~~a-~-----eaGk~VID~ 100 (302)
T PRK08300 81 GAHVRHAAKL-R-----EAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHH-H-----HcCCeEEEC
Confidence 8777766554 2 345666654
No 184
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00011 Score=70.33 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cCCC--c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EPMD--F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~~g--~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
..++|||+|..+...++.+..- ++..+|.+|+|++++++++. ++++ + .+.|.++++..||+|+.|+|...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAV--RDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhh--CCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 4799999999999999988764 45678999999999888765 3344 3 67788999999999999999775
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|..+
T Consensus 208 -Pil~---~~~l--~~G~hI~ai 224 (330)
T COG2423 208 -PVLK---AEWL--KPGTHINAI 224 (330)
T ss_pred -Ceec---Hhhc--CCCcEEEec
Confidence 5553 3356 777665554
No 185
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.68 E-value=0.0002 Score=70.96 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=63.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|+|+|.+|..+++.+...|. +|+++++++.++..... .|+...+..++++.+|+||.++.... +..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~d~dp~ra~~A~~-~G~~v~~l~eal~~aDVVI~aTG~~~vI~~--- 283 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGA----RVIVTEVDPICALQAAM-DGFRVMTMEEAAELGDIFVTATGNKDVITA--- 283 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcCCchhhHHHHh-cCCEecCHHHHHhCCCEEEECCCCHHHHHH---
Confidence 4689999999999999999999885 89999999887655444 36633356788899999999986433 321
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++.++++.
T Consensus 284 ~~-~~~m--K~GailiNv 298 (425)
T PRK05476 284 EH-MEAM--KDGAILANI 298 (425)
T ss_pred HH-HhcC--CCCCEEEEc
Confidence 22 2234 677777765
No 186
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.68 E-value=0.00011 Score=70.21 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=49.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------Cc-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------g~-~~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|++|+.++..|...|.+ .++.++|+++++++....++ .. ...+..+.+++||+||++.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIA--DELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 5899999999999999999988862 48999999877655322211 22 2234456789999999975
No 187
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.68 E-value=0.00016 Score=68.09 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=55.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhh-hcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKL-HWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~-~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+||||||+|++|..++..+++... .++ .++++++++.. .+.+++|+ ...+.++++. +.|+||+|+|+....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 689999999999999888876432 244 57888887533 34445787 3456677765 578999999988766
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+.....
T Consensus 79 e~a~~a 84 (285)
T TIGR03215 79 RHARLL 84 (285)
T ss_pred HHHHHH
Confidence 666544
No 188
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.66 E-value=0.00014 Score=67.62 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=65.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------C---Cc-cccChHHHhhcCCEEEEeeCh
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------M---DF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~---g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
|+|||+ |.||..++..|+..|.....+|.++|+++++++....+ . .+ ..++..+.+++||+||++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 99999999999988732245899999988765532221 1 22 345557889999999995511
Q ss_pred ----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 ----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
..++++.+++ .++ .++.+++..++.++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i-~~~---~p~a~~i~~tNP~d 123 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNI-EKY---SPDAWIIVVSNPVD 123 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCcHH
Confidence 2355666666 554 36667776766655
No 189
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.65 E-value=4.2e-05 Score=73.09 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|..-++.+... .+-.+|.+|+|++++++++.++ +++ .+.+.++++.+||+|+.|++...-.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV--RPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH--S--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred ceEEEECCCHHHHHHHHHHHHh--CCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 5899999999999999988764 2457999999999888765432 344 5778999999999999999876411
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|.++
T Consensus 207 P~~~---~~~l--~~g~hi~~i 223 (313)
T PF02423_consen 207 PVFD---AEWL--KPGTHINAI 223 (313)
T ss_dssp ESB----GGGS---TT-EEEE-
T ss_pred cccc---HHHc--CCCcEEEEe
Confidence 3332 2246 778776665
No 190
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.64 E-value=0.0016 Score=60.08 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=103.5
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ +++|..|+++++|++|+-+|-.. -..+++.+ .+++ ++|.+|.+. ..++.-.+.+.|... .+.+.. |..+
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki-~~~i--pEgAII~~t-CTIpt~~ly~~le~l--~R~Dvg-IsS~ 200 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKF-ADDI--KEGAIVTHA-CTIPTTKFAKIFKDL--GRDDLN-VTSY 200 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHH-HhhC--CCCCEEecc-ccCCHHHHHHHHHHh--CcccCC-eecc
Confidence 56 66677889999999999998644 35677777 7778 778777665 456665554444320 013444 5555
Q ss_pred cCC-chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---H-
Q psy316 190 MPN-TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---A- 263 (341)
Q Consensus 190 mpn-~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~- 263 (341)
+|. .|..- |...+.-+ -.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+. ..+....++.+. +
T Consensus 201 HPaaVPgt~--Gq~~i~eg-yAtE--EqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~---VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 201 HPGAVPEMK--GQVYIAEG-YADE--EAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSA---VTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCCCCCC--Cceecccc-cCCH--HHHHHHHHHHHHhCCCeeecchhhcchhhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 553 22221 33333222 3456 8999999999999876 45677766655544332 222333333332 2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+-+.+.+..++.-.+.+++.
T Consensus 273 qIlgAP~~mie~qa~eaL~tmasLme~ 299 (342)
T PRK00961 273 QILGAPADFAQMMADEALTQITALMRE 299 (342)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 247889888888888888888888766
No 191
>PLN02494 adenosylhomocysteinase
Probab=97.62 E-value=0.00019 Score=71.55 Aligned_cols=97 Identities=10% Similarity=0.149 Sum_probs=69.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~vl 141 (341)
.++++|+|+|.+|..+++.+...|. +|+++++++.++..... .|....+..+++..+|+||.++....+ .+.+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga----~VIV~e~dp~r~~eA~~-~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L 328 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGA----RVIVTEIDPICALQALM-EGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHM 328 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhhHHHHh-cCCeeccHHHHHhhCCEEEECCCCccchHHHHH
Confidence 4789999999999999999988884 89999999876544333 365223567888999999998765432 3444
Q ss_pred HHhhhcccccCCCcEEEEecC-C--CCHHHHHHh
Q psy316 142 QGLVNDKVTLNSSRCIISMLV-G--VDLETLKKK 172 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a-g--i~~~~l~~~ 172 (341)
.. + +++.+++.+.- + +....|.+.
T Consensus 329 ~~-----M--K~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 329 RK-----M--KNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred hc-----C--CCCCEEEEcCCCCCccCHHHHhhc
Confidence 43 4 67788887743 2 334556554
No 192
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.61 E-value=0.00032 Score=69.19 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=69.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|||+|.+|..+++.+...|. +|+++++++.+...... .|....+.+++++.+|++|.++.... +..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~d~dp~r~~~A~~-~G~~v~~leeal~~aDVVItaTG~~~vI~~--- 266 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGA----RVIVTEVDPIRALEAAM-DGFRVMTMEEAAKIGDIFITATGNKDVIRG--- 266 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcC----EEEEEeCChhhHHHHHh-cCCEeCCHHHHHhcCCEEEECCCCHHHHHH---
Confidence 4789999999999999999998884 89999999877654444 46633355778899999999986543 322
Q ss_pred HhhhcccccCCCcEEEEecCC---CCHHHHHHh
Q psy316 143 GLVNDKVTLNSSRCIISMLVG---VDLETLKKK 172 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~ 172 (341)
+. ...+ +++.+++...-+ ++.+.|.+.
T Consensus 267 ~~-~~~m--K~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 267 EH-FENM--KDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HH-HhcC--CCCcEEEEECCCCceeCHHHHHHH
Confidence 12 2335 677788866432 445555543
No 193
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.61 E-value=0.0003 Score=69.56 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
..+++|+|+|.+|..+++.+...|. +|+++++++.+++.... +|+...+..+++..+|+||.|+... .+..-
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga----~ViV~d~d~~R~~~A~~-~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~-- 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGA----RVIVTEVDPICALQAAM-EGYEVMTMEEAVKEGDIFVTTTGNKDIITGE-- 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEECChhhHHHHHh-cCCEEccHHHHHcCCCEEEECCCCHHHHHHH--
Confidence 4689999999999999999998884 89999999988876665 6872224567788999999998643 33332
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
. ...+ +++.+++.+.
T Consensus 275 -~-l~~m--k~GgilvnvG 289 (413)
T cd00401 275 -H-FEQM--KDGAIVCNIG 289 (413)
T ss_pred -H-HhcC--CCCcEEEEeC
Confidence 1 2234 6777777653
No 194
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.61 E-value=0.00014 Score=69.10 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=60.5
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CC--Cc---cccChHHHhhcCCEEEEeeC-
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PM--DF---ALNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~--g~---~~~s~~e~~~~aDvIilaV~- 133 (341)
|+|||+|.||..++..|...|+ . +|+++|+++++++. +.. .. .. ...+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l--~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL--G-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC--c-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCC
Confidence 6899999999999999988874 2 89999998765431 111 01 11 2234 456899999999872
Q ss_pred ---h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ---P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ---~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+ ..++++++++ .++. ++.++|-.++.++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i-~~~~---p~~~iIv~sNP~d 119 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENI-KKYA---PNAIVIVVTNPLD 119 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHH
Confidence 1 1245666666 6654 5556665666654
No 195
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.60 E-value=9.6e-05 Score=69.69 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-----c---cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-----F---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-----~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
+++.|||+|.+|++++..|.+.|. .+|+++||++++++.+.++++ . ...+..+.+.++|+||-|+|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~---~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGV---ERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 689999999999999999999985 589999999999888765431 1 122334456678888888764
No 196
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.60 E-value=0.0023 Score=59.27 Aligned_cols=164 Identities=11% Similarity=0.149 Sum_probs=103.4
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ +++|..|+++++|++|+-+|-.. -..+++.+ .+++ ++|.+|.+. ..++.-.+.+.+... + +.+.. |..+
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikki-i~~l--pEgAII~~t-CTIpt~~ly~ilE~l-~-R~Dvg-VsS~ 198 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKF-IDDI--PEGAIVTHA-CTIPTTKFAKIFEDL-G-REDLN-VTSY 198 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHH-HhhC--CCCCEEecc-ccCChHHHHHHHHhh-C-cccCC-eecc
Confidence 56 66777889999999999998644 35677777 7778 778777765 456665554444320 0 13444 5566
Q ss_pred cCC-chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---H-
Q psy316 190 MPN-TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---A- 263 (341)
Q Consensus 190 mpn-~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~- 263 (341)
+|. .|..- .+.. +.- .-.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+. ..+....++.+. +
T Consensus 199 HPaaVPgt~-~q~Y-i~e-gyAtE--EqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~---VTAv~~aGiL~Y~~~~t 270 (340)
T TIGR01723 199 HPGCVPEMK-GQVY-IAE-GYASE--EAVNKLYELGKKARGKAFKMPANLLGPVCDMCSA---VTAIVYAGLLAYRDAVT 270 (340)
T ss_pred CCCCCCCCC-CceE-eec-ccCCH--HHHHHHHHHHHHhCCCeeecchhhccchhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 654 22222 2222 222 23556 8999999999999876 45677766655544332 222223333332 2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+-+.+.+..++.-.+.+++.
T Consensus 271 ~IlgAP~~miq~qa~eaL~tmasLme~ 297 (340)
T TIGR01723 271 KILGAPADFAQMMADEALTQIHNLMEE 297 (340)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 347889888888888888888888766
No 197
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.58 E-value=0.00012 Score=71.90 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=69.7
Q ss_pred CeEEEEcccHHHHHH-HHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc----c---------------c--cChHH--
Q psy316 65 TKVGFIGAGNMAQAV-ATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF----A---------------L--NDNHR-- 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~----~---------------~--~s~~e-- 120 (341)
|||.++|+|+||+++ ...|.++| ++|++.+++++..+.++++ |. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g----~~V~~vd~~~~~v~aL~~q-glY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG----FEVTFVDVNQELIDALNKR-KSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC----CeEEEEECCHHHHHHHhcC-CCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 689999999999966 55566666 5899999988888888765 42 0 0 01122
Q ss_pred -HhhcCCEEEEeeChHHHHHHHHHhhhccccc------CCCcEEEEecCCCCH-HHHHHh
Q psy316 121 -IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTL------NSSRCIISMLVGVDL-ETLKKK 172 (341)
Q Consensus 121 -~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~------~~~~iIVs~~agi~~-~~l~~~ 172 (341)
.+.++|+|+++|++.....+...+ .+.|.. .+.-+|++|.++..- +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l-~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLI-AKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHH-HHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 234789999999988777777666 554410 112278999999875 344443
No 198
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.56 E-value=0.0002 Score=69.98 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=62.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c---c---cChHHHhhcCCEEEEeeCh---
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A---L---NDNHRIIKEAEYVFLAMKP--- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~---~---~s~~e~~~~aDvIilaV~~--- 134 (341)
.++.|||+|.+|...++.+...|. +|+++||++++++.+...++. . . .+..+.+.++|+||.+++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa----~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGA----TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 569999999999999999999884 799999999988877654543 1 1 2345567899999999731
Q ss_pred ---HH-HHHHHHHhhhcccccCCCcEEEEec
Q psy316 135 ---QY-LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 135 ---~~-v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.. ..+.++. + +++.+||++.
T Consensus 244 ~~p~lit~~~l~~-----m--k~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQ-----M--KPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhc-----C--CCCCEEEEEe
Confidence 11 1333333 4 6778888765
No 199
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.56 E-value=0.00012 Score=64.72 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc---c--ccC---hHHHhhcCCEEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF---A--LND---NHRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~---~--~~s---~~e~~~~aDvIil 130 (341)
.+++.|+|+ |.+|..+++.|.+.| .+|++++|++++++.+.+++ +. . ..+ ..+.++++|+||.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g----~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG----ARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC----CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 368999996 999999999999887 48999999998877655422 22 1 122 2356788999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.... ..... .... +++.+++++..
T Consensus 104 at~~g~~--~~~~~-~~~~--~~~~vv~D~~~ 130 (194)
T cd01078 104 AGAAGVE--LLEKL-AWAP--KPLAVAADVNA 130 (194)
T ss_pred CCCCCce--echhh-hccc--CceeEEEEccC
Confidence 9986543 11111 2223 44667887643
No 200
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.55 E-value=0.0002 Score=68.48 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=62.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CC---cc-ccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MD---FA-LNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g---~~-~~s~~e~~~~aDvIilaV- 132 (341)
+||+|||+|++|+.++..|...|. ..++.++|+++++++....+ +. +. ..+. +.+++||+||++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL--ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCC
Confidence 599999999999999999988885 45899999987655422211 11 22 2444 4589999999965
Q ss_pred ---ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. . ++++.+.+ ..+ .++.+++..++.++
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i-~~~---~p~~~vivvsNP~d 124 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKL-VKY---SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCcEEEEccChHH
Confidence 121 1 33344444 444 35667777767655
No 201
>PLN02602 lactate dehydrogenase
Probab=97.54 E-value=0.00037 Score=67.55 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C-c-cc-cChHHHhhcCCEEEEee--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D-F-AL-NDNHRIIKEAEYVFLAM-- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g-~-~~-~s~~e~~~~aDvIilaV-- 132 (341)
+||+|||+|++|++++..|+..++ ..++.++|+++++++..+.++ + . +. ....+.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence 599999999999999999998886 358999999876654322111 1 2 21 12245589999999984
Q ss_pred --ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|. .++++.+.+ ..+ .++.+++..++.++.
T Consensus 116 ~~k~g~tR~dll~~N~~I~~~i~~~I-~~~---~p~~ivivvtNPvdv 159 (350)
T PLN02602 116 RQIPGESRLNLLQRNVALFRKIIPEL-AKY---SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCchHH
Confidence 121 122344444 443 366677777776653
No 202
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.52 E-value=0.00069 Score=61.76 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC----hhhh-------hhcCcCCCc--cccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS----ERFK-------LHWPEPMDF--ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~----~e~~-------~~l~~~~g~--~~~s~~e~~~~aDvIila 131 (341)
+||.|+|+|.+|.+++..|.+.|. ...+|+++||+ .++. +.+.++++. ...+..+.+.++|+||=+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 689999999999999999999985 12289999998 4443 223222221 112556778899999999
Q ss_pred eChHHH-HHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MKPQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+++..+ .++++.+ .++.+|..+.+..+
T Consensus 105 T~~G~~~~~~l~~m-------~~~~ivf~lsnP~~ 132 (226)
T cd05311 105 SRPGVVKKEMIKKM-------AKDPIVFALANPVP 132 (226)
T ss_pred CCCCCCCHHHHHhh-------CCCCEEEEeCCCCC
Confidence 985443 2444444 45667777776654
No 203
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.50 E-value=0.0004 Score=67.22 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC------------------Cc-cccChHHHhh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM------------------DF-ALNDNHRIIK 123 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~ 123 (341)
++||||+|+|+||+.+++.+.+.. .-+| .+++++++....+.+++ ++ ...+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~---d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP---DMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC---CcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 368999999999999999887643 2344 46777765444332211 23 3445667777
Q ss_pred cCCEEEEeeChHHHHHHHHHh
Q psy316 124 EAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 124 ~aDvIilaV~~~~v~~vl~~i 144 (341)
++|+||.|+++....+.....
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~ 98 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELY 98 (341)
T ss_pred cCCEEEECCCchhhHHHHHHH
Confidence 899999999988776666543
No 204
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.50 E-value=0.00034 Score=69.80 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=55.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cC---hHHH-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---ND---NHRI-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s---~~e~-~~~aDvIilaV~~~ 135 (341)
|+|.|+|+|.+|..+++.|.+.|+ +|+++++++++.+.+.+..++ .. .+ ..++ +.++|.||++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 589999999999999999999884 899999999998887653443 11 12 1223 56899999999876
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
.....+
T Consensus 77 ~~n~~~ 82 (453)
T PRK09496 77 ETNMVA 82 (453)
T ss_pred HHHHHH
Confidence 655444
No 205
>PRK15076 alpha-galactosidase; Provisional
Probab=97.49 E-value=0.00056 Score=68.19 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHH--HHHhcCCCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVAT--SLIRTGLCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~--~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
+||+|||+|.||...+. .++....+...+|.++|+++++++... ...+ + .++|..+++++||+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999966554 665222234458999999998876311 1112 2 35676888999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
++.
T Consensus 82 ti~ 84 (431)
T PRK15076 82 AIQ 84 (431)
T ss_pred eee
Confidence 974
No 206
>KOG2305|consensus
Probab=97.47 E-value=0.00037 Score=62.69 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=101.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC------CC--------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP------MD--------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~------~g--------------~-~~~s~~ 119 (341)
-||+|+|.|.+|++.|--+...| ++|.+||..++.+.. +.++ .| + .+++..
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~G----yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSG----YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred cceeEeecccccchHHHHHhccC----ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 48999999999999999998888 499999998765442 1111 11 1 456788
Q ss_pred HHhhcCCEEEEeeChH-HH-HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ-YL-DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~-~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
|+.+.+=.|=-|+|.. .+ +++.+++ ...+ .+.+|+-|-++.+.++.+..-+. +... ++-++|-.|..+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~ql-D~i~--d~~tIlaSSTSt~mpS~~s~gL~------~k~q-~lvaHPvNPPyf 149 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQL-DEIA--DPTTILASSTSTFMPSKFSAGLI------NKEQ-CLVAHPVNPPYF 149 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHH-HHhc--CCceEEeccccccChHHHhhhhh------hhhh-eeEecCCCCCcc
Confidence 8898888888899854 33 3455666 6556 56656666556666666655554 2445 677777444322
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~ 230 (341)
- -.+-+++.+-.++ +.+++.+.|++++|..
T Consensus 150 i-PLvElVPaPwTsp--~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 150 I-PLVELVPAPWTSP--DTVDRTRALMRSIGQE 179 (313)
T ss_pred c-chheeccCCCCCh--hHHHHHHHHHHHhCCC
Confidence 1 1223455565666 8899999999999964
No 207
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.46 E-value=0.00019 Score=67.34 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChHHHhhcCCEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~e~~~~aDvIilaV~~~ 135 (341)
..+++.|+|+|.+|.+++..|...|. .+|++++|+.++++.+.++++. ...+..+.+..+|+||-|+|..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGV---AEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 34689999999999999999999884 5899999999998877664431 1012234567788888888754
No 208
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00031 Score=66.96 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------Cc-cccChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------g~-~~~s~~e~~~~aDvIilaV 132 (341)
||+|||+|++|+.+|..|+..++ ..++.++|+++++++....++ .+ ...+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~--~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL--FSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998886 358999999876544211111 12 2223467899999999986
No 209
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.46 E-value=0.00017 Score=67.97 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----ccc---ChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALN---DNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~---s~~e~~~~aDvIilaV~~ 134 (341)
.+++.|||+|-+|++++..|.+.|. .+|++++|++++++.+.++++. ... +..+.+.++|+||-|+|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV---TDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4689999999999999999999985 5899999999999888764421 111 112334567787777764
No 210
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.43 E-value=0.00021 Score=70.06 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=55.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCC-CCeEEEEcCChhhhhhcCcC----CC----c-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCI-PAQIIASAPSERFKLHWPEP----MD----F-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~-~~~V~v~~r~~e~~~~l~~~----~g----~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
.+++|||+|.+|...++.+.... + -.+|++|+|++++++++.++ ++ + .+.+.++++.+||||+.|++.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~--~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC--PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 68999999999999999887732 2 36999999999988765532 22 4 568899999999999999974
No 211
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.43 E-value=0.00094 Score=52.41 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
..++.++|+|++|.+++..+. ..|+ .-+.++|.++++.-.-. .|+ +..+..++.+. .|+-+++||+....+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~---~i~~~~dv~~~~~G~~i--~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~ 77 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF---GIVAVFDVDPEKIGKEI--GGIPVYGSMDELEEFIEIDIAIITVPAEAAQE 77 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE---CEEEEEEECTTTTTSEE--TTEEEESSHHHHHHHCTTSEEEEES-HHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC---CCEEEEEcCCCccCcEE--CCEEeeccHHHhhhhhCCCEEEEEcCHHHHHH
Confidence 357999999999999986554 3443 34568898888654322 256 55577777666 999999999999999
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++.++
T Consensus 78 ~~~~~ 82 (96)
T PF02629_consen 78 VADEL 82 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 212
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.43 E-value=0.00051 Score=66.57 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=66.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------Ccccc--ChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------DFALN--DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------g~~~~--s~~e~~~~aDvIilaV~ 133 (341)
+||+|||+ |.+|..+++.|.++ +..++. +++++...-+.+.+.+ ..... +..+.+.++|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h---P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH---PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC---CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCC
Confidence 58999998 99999999999865 334666 5454432222222111 11122 44555568999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
.....++...+ . ..+..||++++..- .+..++|.+
T Consensus 78 ~~~s~~~~~~~----~--~~G~~VIDlS~~fR~~~~~~y~~~y~ 115 (346)
T TIGR01850 78 HGVSAELAPEL----L--AAGVKVIDLSADFRLKDPEVYEKWYG 115 (346)
T ss_pred chHHHHHHHHH----H--hCCCEEEeCChhhhcCChhhhHHhcC
Confidence 99888887766 3 45788998876543 344566665
No 213
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.42 E-value=0.00093 Score=72.83 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=59.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC----------CCeEEEEcCChhhhhhcCcCC-C---c-c-ccChHHHh---hc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCI----------PAQIIASAPSERFKLHWPEPM-D---F-A-LNDNHRII---KE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~----------~~~V~v~~r~~e~~~~l~~~~-g---~-~-~~s~~e~~---~~ 124 (341)
++||+|||+|.||+..++.|.+...+. ...|+++++++++++.+.+.+ + + . +.+.+++. +.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998764211 113889999999988876655 4 2 2 44555443 57
Q ss_pred CCEEEEeeChHHHHHHHHHh
Q psy316 125 AEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i 144 (341)
+|+|+.|+|+....+++...
T Consensus 649 ~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 649 VDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCEEEECCCchhhHHHHHHH
Confidence 99999999987666666543
No 214
>PRK11579 putative oxidoreductase; Provisional
Probab=97.40 E-value=0.001 Score=64.35 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|.+|.. .+..+.+.. ..++ .+++++++++. +++ +. ...|.+++++ +.|+|++|+|+...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~---~~~l~av~d~~~~~~~---~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP---GLELAAVSSSDATKVK---ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC---CCEEEEEECCCHHHHH---hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 469999999999984 556665532 2355 47999987754 224 34 6678888886 57999999998765
Q ss_pred HHHHHH
Q psy316 138 DSAIQG 143 (341)
Q Consensus 138 ~~vl~~ 143 (341)
.++...
T Consensus 78 ~~~~~~ 83 (346)
T PRK11579 78 FPLAKA 83 (346)
T ss_pred HHHHHH
Confidence 555544
No 215
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.36 E-value=0.0012 Score=62.95 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=62.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh--hhhhhcCcC-------CC--c--cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE--RFKLHWPEP-------MD--F--ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~--e~~~~l~~~-------~g--~--~~~s~~e~~~~aDvIil 130 (341)
|||+|||+ |.+|..++..|...|+ ..+|.+++|++ ++++..+.+ .+ . ...+..+.+.+||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~--~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV--VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEE
Confidence 68999998 9999999999999885 24799999954 343322111 12 1 12222456999999999
Q ss_pred eeC----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 131 AMK----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 131 aV~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
++- + +.++++.+.+ .++. ++.+||-..+.++.
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i-~~~~---~~~~viv~~npvd~ 126 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFA---PDTKILVVTNPVDV 126 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEeCCchHH
Confidence 983 1 1244455555 5543 45566666676664
No 216
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.35 E-value=0.00044 Score=65.72 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=62.5
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C-c--cccChHHHhhcCCEEEEeeC--h
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D-F--ALNDNHRIIKEAEYVFLAMK--P 134 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g-~--~~~s~~e~~~~aDvIilaV~--~ 134 (341)
|+|||+|.+|+.++..|+..|+ .++++++|+++++++..+.++ . . ...+..+.+++||+||++.. .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~--~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL--ASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCC
Confidence 6899999999999999998885 358999999887766443321 1 1 11222568999999999973 1
Q ss_pred --H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 --Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 --~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ +++ .++.+++..++..+
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i-~~~---~p~~~viv~sNP~d 119 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNL-KKY---GPDAIILVVSNPVD 119 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccChHH
Confidence 1 134444555 444 35666776666554
No 217
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.34 E-value=0.00027 Score=66.02 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-cccChHH-HhhcCCEEEEeeChHH--
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-ALNDNHR-IIKEAEYVFLAMKPQY-- 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-~~~s~~e-~~~~aDvIilaV~~~~-- 136 (341)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+++ +. ...+..+ ...++|+||.|+|...
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~----~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADC----NVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSG 192 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCC
Confidence 4689999999999999999999884 8999999998887765532 22 1222222 2357899999998632
Q ss_pred -HHHHHHHhhhcccccCCCcEEEEec
Q psy316 137 -LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 137 -v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.-. ...+ +++.+++++.
T Consensus 193 ~~~~~~~~--~~~l--~~~~~v~D~~ 214 (270)
T TIGR00507 193 NIDEPPVP--AEKL--KEGMVVYDMV 214 (270)
T ss_pred CCCCCCCC--HHHc--CCCCEEEEec
Confidence 2111000 1124 5677777764
No 218
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.34 E-value=0.00085 Score=63.78 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C--c-ccc-ChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D--F-ALN-DNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g--~-~~~-s~~e~~~~aDvIilaV- 132 (341)
+||+|||+|++|++++..|+..++ ..++.++|++++.++--+.++ + . +.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 589999999999999999987775 348999999866554322221 1 2 222 2356789999999986
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||. .++++.+++ ..+ .++.+++-.+|.+++
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i-~~~---~~d~ivlVvtNPvD~ 123 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAI-AKY---APDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHH-Hhh---CCCeEEEEecCcHHH
Confidence 232 123344445 444 356677767787764
No 219
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.34 E-value=0.00081 Score=64.53 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChhh--hhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSERF--KLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e~--~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
++||+|||+ |++|+.++..|...|.+. ..++.++|++++. ++..+.++ .+ +..+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 358999999 999999999999888632 1168899985432 33222111 12 23445678999999
Q ss_pred EEEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. . ++++..++ .++- .++.++|-+++.++.
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKAL-NDVA--SRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEecCcHHH
Confidence 99985 221 1 34444455 4443 246677777676653
No 220
>PRK05442 malate dehydrogenase; Provisional
Probab=97.30 E-value=0.0012 Score=63.51 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=64.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChh--hhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSER--FKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e--~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
++||+|||+ |++|+.++..|...+.+. +.++.++|+++. +++..+-++ .. ...+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 469999998 999999999998877532 227899998542 233221111 12 23455678999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++..++ .++. .++.+++-+++.++.
T Consensus 84 VVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~--~~~~iiivvsNPvDv 135 (326)
T PRK05442 84 ALLVGARPRGPGMERKDLLEANGAIFTAQGKAL-NEVA--ARDVKVLVVGNPANT 135 (326)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEeCCchHH
Confidence 99875 221 134444555 5544 457777777776664
No 221
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.30 E-value=0.00049 Score=67.49 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=52.4
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-----cccC---hHHHhhcCCEEEEeeChH
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-----ALND---NHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-----~~~s---~~e~~~~aDvIilaV~~~ 135 (341)
|.|+|+|.+|+.+++.|.+.+. ..+|++.+|+.++++++.+++ .+ ...+ ..++++++|+||-|++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 7899999999999999998762 128999999999988876531 21 1222 345678999999999987
Q ss_pred HHHHHHHH
Q psy316 136 YLDSAIQG 143 (341)
Q Consensus 136 ~v~~vl~~ 143 (341)
.-..+++.
T Consensus 79 ~~~~v~~~ 86 (386)
T PF03435_consen 79 FGEPVARA 86 (386)
T ss_dssp GHHHHHHH
T ss_pred hhHHHHHH
Confidence 55555543
No 222
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.29 E-value=0.002 Score=57.77 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cc--cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-AL--NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~--~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||+|.+|...++.|+++|. +|++++++. +.+..+..+..+ .. .-..+.+..+|+||.|+....+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~ 85 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGA----HIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNE 85 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHH
Confidence 4789999999999999999999984 899998764 233444332122 11 111345778999999999888777
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
.+.+.
T Consensus 86 ~i~~~ 90 (202)
T PRK06718 86 QVKED 90 (202)
T ss_pred HHHHH
Confidence 66554
No 223
>PRK04148 hypothetical protein; Provisional
Probab=97.28 E-value=0.001 Score=55.57 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=68.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc------cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF------ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~------~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
+||..||+| -|..++..|.+.|+ +|++.|.+++..+.+++ .++ .++.+.+.-+++|+|.-.=||..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~----~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGF----DVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 689999999 89889999999885 99999999998776655 343 2344566788999999998988887
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.-+.++ +..+ +.+-+|..+.+
T Consensus 92 ~~~~~l-a~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 92 PFILEL-AKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHH-HHHc--CCCEEEEcCCC
Confidence 777777 6666 55545555533
No 224
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.28 E-value=0.0018 Score=57.96 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||+|||+|.||+.++..|...|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 35789999999999999999999996 579999987
No 225
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.28 E-value=0.0018 Score=62.67 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
..||||||+ .||...+..+.+... ..+ +.+++|++++++.+++++|+ ...+.++++.+.|++++++|
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~--~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPE--RFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVR 71 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCC--CcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeC
Confidence 468999999 689999999877530 124 45899999999999988998 78899999988888888874
No 226
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.26 E-value=0.00038 Score=70.32 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.++++|+|+|.+|.+++..|.+.|. +|++++|++++++.+.++++. . ..+.. .+.++|+||.|+|...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~ 402 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGA----ELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSV 402 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCC
Confidence 3689999999999999999999984 899999999888877654432 1 12221 2568999999998754
No 227
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.26 E-value=0.00062 Score=61.40 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH--hcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI--RTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~--~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
..+|+|||+|.+|..+++.+. ..| .++ .++|+++++........++ ...+..+.++ +.|++++|+|....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g----~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG----FKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC----cEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 468999999999999998643 234 354 4788887766433321223 3445566665 49999999998877
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.++...+
T Consensus 160 ~~i~~~l 166 (213)
T PRK05472 160 QEVADRL 166 (213)
T ss_pred HHHHHHH
Confidence 7766554
No 228
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.26 E-value=0.0012 Score=63.45 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
+.||+|||+ |++|++++..|...+++. ..++.++|+++ ++++..+.++ +. +..+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 368999998 999999999999888521 11799999854 2232211110 12 22455678999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++..++ .++- .++.+++-.++.++.
T Consensus 83 VVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~--~~~~iiivvsNPvDv 134 (323)
T TIGR01759 83 ALLVGAFPRKPGMERADLLSKNGKIFKEQGKAL-NKVA--KKDVKVLVVGNPANT 134 (323)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEeCCcHHH
Confidence 99885 221 134455555 5543 337777777776653
No 229
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.00082 Score=63.11 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.++|+|||. |.||..|+..|+++|. +|++|... +.++.+.+++||+||.|+. |..+...
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~- 218 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE- 218 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCC----EEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH-
Confidence 589999999 9999999999999984 99999311 1256788899999999996 4444332
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
.+ +++.+||++
T Consensus 219 ------~i--k~GavVIDv 229 (284)
T PRK14179 219 ------FV--KEGAVVIDV 229 (284)
T ss_pred ------Hc--cCCcEEEEe
Confidence 24 788899987
No 230
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.23 E-value=0.00097 Score=58.00 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|.|||+|.| |..+++.|.+.|. +|++++|+.+ +..+.+.++|+||.|++...+ +.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~~r~~~--------------~l~~~l~~aDiVIsat~~~~i---i~ 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNA----TVTVCHSKTK--------------NLKEHTKQADIVIVAVGKPGL---VK 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCC----EEEEEECCch--------------hHHHHHhhCCEEEEcCCCCce---ec
Confidence 579999999997 8889999999884 7999998732 345678899999999986432 21
Q ss_pred HhhhcccccCCCcEEEEecCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+ +++.+||++...
T Consensus 103 ---~~~~--~~~~viIDla~p 118 (168)
T cd01080 103 ---GDMV--KPGAVVIDVGIN 118 (168)
T ss_pred ---HHHc--cCCeEEEEccCC
Confidence 1234 567788887543
No 231
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.0014 Score=62.93 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhhhcCcCC---------Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKLHWPEPM---------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~~l~~~~---------g~-~~~s~~e~~~~aDvI 128 (341)
.||+|||+ |++|+.++..|...+.+. ..++.++|+++ ++++-.+.++ +. +..+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 999999999999877532 12599999987 5443222111 12 224566889999999
Q ss_pred EEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|++- +|. . ++++..++ .++. +++.+++-+++.++.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD~ 131 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEAL-NKVA--KPTVKVLVVGNPANT 131 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHH-HHhC--CCCeEEEEeCCcHHH
Confidence 9875 221 1 34445555 5543 366677767676653
No 232
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.21 E-value=0.00079 Score=58.85 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=50.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+ |+.|+.|++-.++.|| +|+.+.||+++....... .-+ -.++..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 79999998 9999999999999995 999999999988654221 012 22334567888999999984
No 233
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.19 E-value=0.0022 Score=51.46 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=49.6
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh--HH-----HhhcCCEEEEeeChHHH
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN--HR-----IIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~--~e-----~~~~aDvIilaV~~~~v 137 (341)
|-|+|+|.+|..+++.|.+.+ .+|++.++++++.+.+.++ |. ...+. .+ -+.+++.+|++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~----~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG----IDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT----SEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC----CEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999965 4899999999999888774 54 22222 11 24689999999986543
No 234
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.19 E-value=0.0018 Score=62.07 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=60.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCc---CCCc-cccC---hHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPE---PMDF-ALND---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~---~~g~-~~~s---~~e~~~~aDvIilaV 132 (341)
-+.||+|||+ |++|+.++..|...+. .+++.++|++....+. +.. ...+ ..++ ..+.++++|+||++.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 3459999999 9999999999987664 4689999984322221 111 1122 2222 157899999999886
Q ss_pred C----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
- +. .++++++.+ +.+ .++.+|+-.++++..
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i-~~~---~~~~iviv~SNPvdv 130 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAV-ASS---APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCcHHH
Confidence 1 21 122333444 333 456677766676653
No 235
>PRK05086 malate dehydrogenase; Provisional
Probab=97.19 E-value=0.0021 Score=61.40 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=61.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhh---hhcCc-CCCc-c----ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIR-TGLCIPAQIIASAPSERFK---LHWPE-PMDF-A----LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~---~~l~~-~~g~-~----~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+ |.+|++++..|.. .+. .+++.+++|++... -.+.. .... + ..+..+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 68999999 9999999988855 332 36889999875321 12222 1111 1 2344677889999999972
Q ss_pred ----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+. .+.++++.+ .++ .++.+|+..+++++
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i-~~~---~~~~ivivvsNP~D 122 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKV-AKT---CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccCchH
Confidence 21 234445555 443 46677777778765
No 236
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.18 E-value=0.0029 Score=62.09 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=62.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-----C-c-cccChH-HHhhcCCEEEEee
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-----D-F-ALNDNH-RIIKEAEYVFLAM 132 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-----g-~-~~~s~~-e~~~~aDvIilaV 132 (341)
.+++||+|+|+ |..|..+.+.|.++- ..+|....++...-+.+...+ + . ...+.+ +.++++|+||+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP---~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP---DFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC---CCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 47889999998 999999999888772 358887766543333322211 1 1 122222 2257899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
|.....+++..+ ..+..||++++..
T Consensus 113 p~~~s~~i~~~~-------~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHGTTQEIIKAL-------PKDLKIVDLSADF 137 (381)
T ss_pred CHHHHHHHHHHH-------hCCCEEEEcCchh
Confidence 998777766655 4567889886543
No 237
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.16 E-value=0.0017 Score=62.02 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=62.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-CCc--c-c-c--ChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-MDF--A-L-N--DNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-~g~--~-~-~--s~~e~~~~aDvIilaV 132 (341)
|||+|||+ |++|++++..|...++ ..++.++|++ +++. |..- ... . . . +..+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 58999999 9999999999988875 3589999987 3322 1110 012 1 1 2 2357899999999886
Q ss_pred --C--hHH------------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --K--PQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~--~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
| |.. ++++.+.+ .++ .++.+|+..+++++.
T Consensus 77 G~~~k~g~tR~dll~~N~~i~~~i~~~i-~~~---~p~a~vivvtNPvDv 122 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAV-AKA---CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccCchhh
Confidence 2 211 23333444 443 467788888887764
No 238
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.15 E-value=0.0035 Score=51.04 Aligned_cols=94 Identities=12% Similarity=0.223 Sum_probs=62.1
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIG----AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG----~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|+||| -+..|..+.++|.++|+ +|+..+...... .|. .+.+..|.-...|++++++|+..+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~Vnp~~~~i------~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPVNPKGGEI------LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEESTTCSEE------TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEECCCceEE------CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 4799999 59999999999999884 898887654222 365 66777774478999999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++++ .. + ..+.+++ ..|...+++.+...
T Consensus 71 ~v~~~-~~-~--g~~~v~~--~~g~~~~~~~~~a~ 99 (116)
T PF13380_consen 71 IVDEA-AA-L--GVKAVWL--QPGAESEELIEAAR 99 (116)
T ss_dssp HHHHH-HH-H--T-SEEEE---TTS--HHHHHHHH
T ss_pred HHHHH-HH-c--CCCEEEE--EcchHHHHHHHHHH
Confidence 99987 43 2 3344444 34544555555544
No 239
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.13 E-value=0.0018 Score=62.21 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=61.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChhh--hhhcCcCC---------Cc-cccChHHHhhcCCEEE
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSERF--KLHWPEPM---------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e~--~~~l~~~~---------g~-~~~s~~e~~~~aDvIi 129 (341)
||+|||+ |++|+.++..|...+++. ..++.++|+++.. ++....++ .+ ...+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 999999999999888652 2269999986442 33222111 11 1224467889999999
Q ss_pred Eee--C--hHH------------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 130 LAM--K--PQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 130 laV--~--~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
++- | +.. ++++..++ .++- +++.+++-.++.++.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i-~~~~--~~~~iiivvsNPvDv 130 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRAL-DKLA--KKDCKVLVVGNPANT 130 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEeCCcHHH
Confidence 875 2 111 33444445 4442 366677767676654
No 240
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.12 E-value=0.002 Score=49.36 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|+|+|.+|..++..|.+.+. .+|++|+| |++|-|++... +.+-
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~~r--------------------------di~i~~~~~~~~~~~~-- 71 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGG---KKVVLCDR--------------------------DILVTATPAGVPVLEE-- 71 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEEcC--------------------------CEEEEcCCCCCCchHH--
Confidence 4689999999999999999999852 58999998 99999997543 2221
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
.+ . .+ +++.+|+++
T Consensus 72 ~~-~-~~--~~~~~v~~~ 85 (86)
T cd05191 72 AT-A-KI--NEGAVVIDL 85 (86)
T ss_pred HH-H-hc--CCCCEEEec
Confidence 12 2 23 567787765
No 241
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.12 E-value=0.0033 Score=54.42 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=52.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccCh---HHHhhcCCEEEEeeCh---
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDN---HRIIKEAEYVFLAMKP--- 134 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~---~e~~~~aDvIilaV~~--- 134 (341)
|.|+|+ |.+|..+++.|++.| ++|++..|++++++. . .++ ...+. .++++.+|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~----~~V~~~~R~~~~~~~-~--~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG----HEVTALVRSPSKAED-S--PGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT----SEEEEEESSGGGHHH-C--TTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC----CEEEEEecCchhccc-c--cccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678996 999999999999998 499999999998887 2 233 12233 4567799999999962
Q ss_pred --HHHHHHHHHh
Q psy316 135 --QYLDSAIQGL 144 (341)
Q Consensus 135 --~~v~~vl~~i 144 (341)
..++.+++.+
T Consensus 74 ~~~~~~~~~~a~ 85 (183)
T PF13460_consen 74 DVDAAKNIIEAA 85 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 2344555544
No 242
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.07 E-value=0.0035 Score=60.62 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...+|.|||+|.+|+.++..|..+|+ .+++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv---g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI---GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCc
Confidence 45789999999999999999999996 5899998864
No 243
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.05 E-value=0.0016 Score=64.85 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC-----CCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI-----PAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~-----~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
..||+|||+ |++|.+++..|...+.+. ..++.++|+++++++..+-++ .+ +..+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 368999999 999999999998872211 237899999988766322111 12 23456788999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++.+.| ..+. .++.+||-+.+.++.
T Consensus 180 VVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I-~~~a--~p~~ivIVVsNPvDv 231 (444)
T PLN00112 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKAL-NEVA--SRNVKVIVVGNPCNT 231 (444)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhc--CCCeEEEEcCCcHHH
Confidence 99985 121 134444555 5533 466677767676654
No 244
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.05 E-value=0.0017 Score=63.63 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=64.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCC---CeEEEE--cCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIP---AQIIAS--APSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~---~~V~v~--~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvI 128 (341)
.||+|||+ |++|..++..|...+.+.. -.+.++ |+++++++..+-++ .+ +..+..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999999998886441 134444 88877765322111 23 334556889999999
Q ss_pred EEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|++- +|. . ++++...+ .++. +++.+||-+++.++.
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I-~~~a--~~~~iviVVsNPvDv 175 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKAL-NAVA--SKNCKVLVVGNPCNT 175 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEcCCcHHH
Confidence 9975 221 1 33444455 4443 467777777776653
No 245
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.05 E-value=0.003 Score=60.71 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCC---CCCeEEEEcCChh--hhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLC---IPAQIIASAPSER--FKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~---~~~~V~v~~r~~e--~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
+.||+|||+ |.+|+.++..|...+.+ ...+|.++|+++. +++...-++ .+ ...+..+.+++||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 358999999 99999999999987754 2348999998653 222211111 11 23444678899999
Q ss_pred EEEee----ChHH------------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 128 VFLAM----KPQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 128 IilaV----~~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
||++- ++.. ++++...+ ..+. .++.++|-.++.++
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEAL-DKYA--KKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEecCcHH
Confidence 99875 1111 23344455 5443 35666666666554
No 246
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.04 E-value=0.0028 Score=63.26 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc--cc---cChHH----HhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF--AL---NDNHR----IIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~--~~---~s~~e----~~~~aDvIilaV~ 133 (341)
+++|.|+|+|.+|..+++.|.+.|+ +|+++++++++.+.+.++. ++ .. .+... .+.++|.||++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGY----SVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 5789999999999999999999884 9999999999888776542 33 22 22221 2458999998887
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+...-++..+ ...+ +..++++-+
T Consensus 307 ~~~~n~~~~~~-~~~~--~~~~ii~~~ 330 (453)
T PRK09496 307 DDEANILSSLL-AKRL--GAKKVIALV 330 (453)
T ss_pred CcHHHHHHHHH-HHHh--CCCeEEEEE
Confidence 65433333222 2334 444555433
No 247
>PLN00106 malate dehydrogenase
Probab=97.02 E-value=0.0031 Score=60.52 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--hcCc---CCCc-c---ccChHHHhhcCCEEEEee--
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--HWPE---PMDF-A---LNDNHRIIKEAEYVFLAM-- 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--~l~~---~~g~-~---~~s~~e~~~~aDvIilaV-- 132 (341)
.||+|||+ |++|+.++..|...+. ..++.++|+++...+ .|.. ...+ . ..+..+.++++|+||++.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPL--VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 58999999 9999999999987775 358999998762211 1111 0111 1 223367899999999885
Q ss_pred --ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. . +.++.+.+ ..+ .++.+|+..++.+.
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i-~~~---~p~aivivvSNPvD 139 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAV-AKH---CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEeCCCcc
Confidence 221 1 22333344 333 46778887778776
No 248
>PRK10206 putative oxidoreductase; Provisional
Probab=96.99 E-value=0.004 Score=60.28 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=52.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCC-c-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMD-F-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
.||||||+|.++.. .+..+...- +..+| .++++++++. .+.++++ + ...|.+++++ +.|+|++|+|+....
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~--~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~ 78 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHF 78 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC--CCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHH
Confidence 58999999998753 345453321 11355 5899987654 4445566 4 6678889886 579999999987655
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
++....
T Consensus 79 ~~~~~a 84 (344)
T PRK10206 79 EYAKRA 84 (344)
T ss_pred HHHHHH
Confidence 555443
No 249
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.003 Score=55.28 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHH-H-hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSL-I-RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L-~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
..++.+||+||+|++++..- . ++|+ .-+.++|.+++..-.-.....+ -.++.++.++ +.|+.|||||.....
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~---~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ 160 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGM---KIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQ 160 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCc---eEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHH
Confidence 46899999999999987652 2 3443 2456899988865443332233 3445556666 789999999998888
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
++.+.+
T Consensus 161 ~vad~L 166 (211)
T COG2344 161 EVADRL 166 (211)
T ss_pred HHHHHH
Confidence 877765
No 250
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.95 E-value=0.0049 Score=52.97 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-c-ccC-hHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-A-LND-NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-~-~~s-~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||.|.+|...++.|++.|. +|+++++ +..+.+.+ ++ + . ... .++.+.++|+||.++.++.+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga----~V~VIsp--~~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGA----FVTVVSP--EICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcC--ccCHHHHh-ccCcEEEecccChhcCCCceEEEECCCCHHHHH
Confidence 4789999999999999999999984 9998864 33333332 22 1 1 111 1234678999999999887776
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
.+.+.
T Consensus 86 ~i~~~ 90 (157)
T PRK06719 86 MVKQA 90 (157)
T ss_pred HHHHH
Confidence 66544
No 251
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.93 E-value=0.0029 Score=60.37 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|++||+|||+ |-.|..+.+.|.++.. -++.....+..+ .+ .+.++...++|++|+|+|...-.++.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~---~~l~~~~s~~~~--~~--------~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSD---IELLSIPEAKRK--DA--------AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCC---eEEEEEecCCCC--cc--------cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 7889999996 9999999998877652 233333222111 11 12234557899999999999877777
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
.++ . ..+..||++++-
T Consensus 68 ~~~-~-----~~g~~VIDlSad 83 (313)
T PRK11863 68 ALI-D-----NPATRVIDASTA 83 (313)
T ss_pred HHH-H-----hCCCEEEECChh
Confidence 766 2 457789988653
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.93 E-value=0.0032 Score=65.47 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~~ 134 (341)
..+|-|+|+|++|+.+++.|.++|+ ++++.|+|+++.+.+++ .|. ...| ..+. ++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 4579999999999999999999884 89999999999998876 564 2222 2222 4589999999987
Q ss_pred HHH-HHHHHHhhhcccccCCCcEEE
Q psy316 135 QYL-DSAIQGLVNDKVTLNSSRCII 158 (341)
Q Consensus 135 ~~v-~~vl~~i~~~~l~~~~~~iIV 158 (341)
+.. ..++... +.. .++.-|+
T Consensus 475 ~~~n~~i~~~~-r~~---~p~~~Ii 495 (601)
T PRK03659 475 PEDTMKIVELC-QQH---FPHLHIL 495 (601)
T ss_pred HHHHHHHHHHH-HHH---CCCCeEE
Confidence 543 3444444 443 3554444
No 253
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.92 E-value=0.0017 Score=62.58 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
.++|.|+|+ |.||+.+++.|... | ..++++++|++++++.+.++++. ...+..+.+.++|+||.++.. ..+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~g---v~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~-- 229 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTG---VAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV-- 229 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCC---CCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--
Confidence 478999999 89999999999854 4 25899999999998888776543 333566788899999988853 221
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++. ...+ +++.++|+++
T Consensus 230 ~I~---~~~l--~~~~~viDiA 246 (340)
T PRK14982 230 EID---PETL--KKPCLMIDGG 246 (340)
T ss_pred cCC---HHHh--CCCeEEEEec
Confidence 011 1124 5667888774
No 254
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.90 E-value=0.0039 Score=64.30 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=54.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~ 133 (341)
++-+|-|+|+|++|+.+++.|.+.|+ ++++.|+|+++.+.+++ .|. ...| ..+. ++++|.++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g~----~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAGI----PLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 45679999999999999999999984 99999999999998876 464 2222 2222 458999999998
Q ss_pred hHH
Q psy316 134 PQY 136 (341)
Q Consensus 134 ~~~ 136 (341)
.+.
T Consensus 491 ~~~ 493 (558)
T PRK10669 491 NGY 493 (558)
T ss_pred ChH
Confidence 654
No 255
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.89 E-value=0.0042 Score=63.01 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccC------------------------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LND------------------------ 117 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s------------------------ 117 (341)
..|+.|+|+|.+|...++.+...|. +|+++++++++++.+++ +|. . ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 4689999999999999998888884 79999999988876655 554 1 111
Q ss_pred --hHHHhhcCCEEEEee-----ChH--HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 118 --NHRIIKEAEYVFLAM-----KPQ--YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 118 --~~e~~~~aDvIilaV-----~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.++++|+||-++ |.. ..++.++. + +++.+||+++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~-----M--KpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDS-----M--KAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhh-----C--CCCCEEEEeee
Confidence 223457899999988 322 23344443 4 67788887653
No 256
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0014 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChH--HHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNH--RIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~--e~~~~aDvIilaV~~~ 135 (341)
.+++.|+|+|-.+.+++..|++.|. .+|+|+||+.+++++|++.++- ...... +...++|+||=|||..
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA---KRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 3679999999999999999999995 6899999999999988765431 111111 1122689999998753
No 257
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.88 E-value=0.0031 Score=60.99 Aligned_cols=71 Identities=25% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc--------CCCCCCe-EEEEcCC----------hhhhhhcCcCCCc--c------c
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT--------GLCIPAQ-IIASAPS----------ERFKLHWPEPMDF--A------L 115 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~--------G~~~~~~-V~v~~r~----------~e~~~~l~~~~g~--~------~ 115 (341)
|.+||+|||+|+||+.+++.|.+. |. ..+ +.+++++ .+++..+.++.+. . .
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence 667999999999999999998765 21 124 3467753 3343333333332 1 2
Q ss_pred cChHHHhh--cCCEEEEeeChH
Q psy316 116 NDNHRIIK--EAEYVFLAMKPQ 135 (341)
Q Consensus 116 ~s~~e~~~--~aDvIilaV~~~ 135 (341)
.+..+++. +.|+|+.|+|+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCc
Confidence 36677764 689999999863
No 258
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.87 E-value=0.0056 Score=59.12 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcC-CCccc--cChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEP-MDFAL--NDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~-~g~~~--~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
++||+|+|+ |..|..+.+.|.+.++ +..++.... +.+++.+ +.-. ....+ .+..+ ++++|++|+|+|+....
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s~ 80 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLA-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVSR 80 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEE-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHHH
Confidence 378999998 9999999999997764 333444332 2233321 1110 01212 12223 57899999999987766
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+++..+ . ..+..||++++..
T Consensus 81 ~~v~~~----~--~~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEKA----R--AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHH----H--HCCCeEEECchhh
Confidence 766655 2 4567889886543
No 259
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.86 E-value=0.0045 Score=59.13 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=61.5
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCcC-CCc-cc---c--ChHHHhhcCCEEEEeeC--
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPEP-MDF-AL---N--DNHRIIKEAEYVFLAMK-- 133 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~~-~g~-~~---~--s~~e~~~~aDvIilaV~-- 133 (341)
||+|||+ |++|++++..|...++ ..++.++|+++...+. |..- ... +. . +..+.+++||+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~--~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY--VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC--CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 7999999 9999999999988875 3589999997622111 1110 011 11 1 22678999999998862
Q ss_pred --hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 --PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 --~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|. .++++.+.+ ..+ .++.+++..+++++.
T Consensus 79 ~~~g~~R~dll~~N~~I~~~i~~~i-~~~---~p~~iiivvsNPvDv 121 (312)
T TIGR01772 79 RKPGMTRDDLFNVNAGIVKDLVAAV-AES---CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHH-HHh---CCCeEEEEecCchhh
Confidence 21 123333444 443 467788888888764
No 260
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0036 Score=59.90 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----C---c--cccChHHH-hhcCCEEEEe
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----D---F--ALNDNHRI-IKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g---~--~~~s~~e~-~~~aDvIila 131 (341)
|++||+|||+ |--|.-|.+.|..+-. .++..+..+...=+.+.+.+ | . ...++.++ .++||+||+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~---ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD---VELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC---eEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEe
Confidence 5789999988 9999999998887643 35655554332222222211 1 1 12233333 4469999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
+|...-.+++.++ + .++..||++++..- .+..++|.+
T Consensus 78 lPhg~s~~~v~~l----~--~~g~~VIDLSadfR~~d~~~ye~~Yg 117 (349)
T COG0002 78 LPHGVSAELVPEL----L--EAGCKVIDLSADFRLKDPEVYEKWYG 117 (349)
T ss_pred cCchhHHHHHHHH----H--hCCCeEEECCcccccCCHHHHHHhhC
Confidence 9999888888776 3 34666999877543 345566665
No 261
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.85 E-value=0.0058 Score=58.98 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=60.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-CCccccCh-HHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-MDFALNDN-HRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-~g~~~~s~-~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+ |..|..+.+.|.++++ +..++....+....-+.+.-. ..+...+. ...+.++|+||+|+|...-.++.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF-PVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 68999988 9999999999998775 333556555443332333210 11222222 23357899999999998888877
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
..+ + ..+.+||++++.
T Consensus 81 ~~~----~--~~G~~VIDlS~~ 96 (334)
T PRK14874 81 PKA----A--AAGAVVIDNSSA 96 (334)
T ss_pred HHH----H--hCCCEEEECCch
Confidence 665 3 456788887653
No 262
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.80 E-value=0.0052 Score=54.95 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.+++.|...|. .+++++|++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEecCC
Confidence 35689999999999999999999995 689999886
No 263
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.78 E-value=0.008 Score=58.35 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---C-----------Cc-cccChHHHhhcCC
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---M-----------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~-----------g~-~~~s~~e~~~~aD 126 (341)
|++||+|+| .|.+|..+++.|.++. ..++....+++.+..+.... + .. ......+.+.++|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p---~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~D 78 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP---WFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVD 78 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC---CceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCC
Confidence 568999998 7999999999988654 24777664444433221110 0 11 1111234457899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+||+|+|.....++.+.+ . ..+..+|+.++
T Consensus 79 vVf~a~p~~~s~~~~~~~-~-----~~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEF-A-----KAGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHH-H-----HCCCEEEECCc
Confidence 999999998777776655 2 34566777755
No 264
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.71 E-value=0.019 Score=47.69 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.||.|+|+|.+|+.+++.|...|. .+++++|.+.=....+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGV---GKITLVDDDIVEPSNL 42 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTT---SEEEEEESSBB-GGGC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCC---CceeecCCcceeeccc
Confidence 589999999999999999999996 6899998754333333
No 265
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.015 Score=53.82 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhh-----hhcC--cCCCc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSERFK-----LHWP--EPMDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~-----~~l~--~~~g~-~~~s~~e~~~~aDvIilaV 132 (341)
|+|||+|.|+ |+||+.+.+.+.+... .++ -.++|.+... ..+. ..+|+ +..+......++|++|=-+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~---~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT 77 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD---LELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT 77 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC---ceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC
Confidence 4689999999 9999999999887652 343 4567764322 1111 22455 5556666677999999877
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
.|....+.++-. .. .+-.+|| -+.|.+.+++++
T Consensus 78 ~P~~~~~~l~~~-~~----~~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 78 TPEATLENLEFA-LE----HGKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred CchhhHHHHHHH-HH----cCCCeEE-ECCCCCHHHHHH
Confidence 777776666544 22 1223455 457888776654
No 266
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.64 E-value=0.0096 Score=57.68 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=59.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE--cCChhhhhhcCcCCCccccC-hHHHhhcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS--APSERFKLHWPEPMDFALND-NHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~--~r~~e~~~~l~~~~g~~~~s-~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++||+|||+ |..|..+.+.|.+.++ +..++... .|+..+.-.... ......+ ..+.+.++|+||+|+|...-.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~-~~~~v~~~~~~~~~~~D~vf~a~p~~~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEG-RDYTVEELTEDSFDGVDIALFSAGGSISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecC-ceeEEEeCCHHHHcCCCEEEECCCcHHHH
Confidence 4579999988 9999999999988764 33344332 333322211111 1122211 224457899999999998877
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++..++ . ..+..||++++-
T Consensus 84 ~~~~~~----~--~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFGPIA----V--DKGAVVVDNSSA 102 (344)
T ss_pred HHHHHH----H--hCCCEEEECCch
Confidence 777665 2 457789988653
No 267
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.63 E-value=0.019 Score=57.26 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=51.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhcC-CCCCCeEEEEcCChhhhhhc-------CcCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNM-AQAVATSLIRTG-LCIPAQIIASAPSERFKLHW-------PEPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~m-G~aia~~L~~~G-~~~~~~V~v~~r~~e~~~~l-------~~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.. .-.+.+.|++.. -++..+|.++|.++++++.+ .++.| + .++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 68999999873 335666666554 25667999999999887642 22233 3 57889999999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
.+.
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 874
No 268
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.62 E-value=0.017 Score=48.42 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
||.|||+|.+|+.++++|...|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCC
Confidence 58999999999999999999996 6899998763
No 269
>KOG2741|consensus
Probab=96.62 E-value=0.011 Score=56.52 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc----cccChHHHhhcC--CEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF----ALNDNHRIIKEA--EYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~----~~~s~~e~~~~a--DvIilaV~~~ 135 (341)
+..|+||+|+|.|+.-+++.|.-.-. ..+.| .+.+|+.+++..+++..++ ...+.++++++. |+|.+++|..
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~-s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE-SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc-cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 45689999999999999998854321 13455 4789999999988876655 567889998864 9999999854
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+..+++.-+ . . +..++++----.++.++.++.+
T Consensus 84 qH~evv~l~-l--~--~~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 84 QHYEVVMLA-L--N--KGKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred cHHHHHHHH-H--H--cCCcEEecccccCCHHHHHHHH
Confidence 444444333 1 1 2334555432334555555444
No 270
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.61 E-value=0.0083 Score=59.84 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC----C--CCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL----C--IPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~----~--~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~ 133 (341)
++|||+||+|++|+.+++.|.++.. . ...+ +.+++|++++.+.+.. .+. .+.+.++++. +.|+|+.+++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~-~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL-PGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCC-cccceeCCHHHHhhCCCCCEEEECCC
Confidence 3689999999999999988765420 0 0113 4578998877654322 234 5677888886 4799999986
Q ss_pred h
Q psy316 134 P 134 (341)
Q Consensus 134 ~ 134 (341)
+
T Consensus 82 ~ 82 (426)
T PRK06349 82 G 82 (426)
T ss_pred C
Confidence 5
No 271
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.58 E-value=0.0055 Score=53.51 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
||+|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCCE
Confidence 68999999999999999999996 5788888764
No 272
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.58 E-value=0.0034 Score=59.63 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=60.1
Q ss_pred EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEeeC----h
Q psy316 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAMK----P 134 (341)
Q Consensus 69 iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV~----~ 134 (341)
|||+|++|+.++..|...+++ .++.++|+++++++..+.++ .. +..+..+.+++||+||++.- |
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~ 78 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKP 78 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCC
Confidence 699999999999999888863 48999999876554322111 12 23345678999999999762 2
Q ss_pred H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ ..+ .++.+++..++..+
T Consensus 79 g~~R~dll~~N~~i~~~~~~~i-~~~---~p~~~vivvsNP~d 117 (299)
T TIGR01771 79 GETRLELVGRNVRIMKSIVPEV-VKS---GFDGIFLVATNPVD 117 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEeCCHHH
Confidence 1 133444455 443 46667776766554
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.57 E-value=0.01 Score=57.13 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc-ChHHH---h-hcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN-DNHRI---I-KEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~-s~~e~---~-~~aDvIilaV~~~~v 137 (341)
.+|+|+|+|-+|..-.+-....|. +|++++|++++++..++ +|. ..+ +..+. + +.+|+||.++++..+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga----~Via~~~~~~K~e~a~~-lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGA----EVIAITRSEEKLELAKK-LGADHVINSSDSDALEAVKEIADAIIDTVGPATL 242 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC----eEEEEeCChHHHHHHHH-hCCcEEEEcCCchhhHHhHhhCcEEEECCChhhH
Confidence 689999999988866666555774 99999999999877666 775 222 11222 2 239999999997777
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
...++-+
T Consensus 243 ~~~l~~l 249 (339)
T COG1064 243 EPSLKAL 249 (339)
T ss_pred HHHHHHH
Confidence 7777766
No 274
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.55 E-value=0.015 Score=58.44 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=59.6
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
-.++|+|||+ |++|..+.++|.+.|+ ..+|+..+++.. +-.|+ ...+..++-...|+++++||+..+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~Vnp~~~------~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPVNPKAG------EILGVKAYPSVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEECCCCC------ccCCccccCCHHHCCCCCCEEEEecCHHHH
Confidence 3578999999 8999999999999985 236777766532 11466 677788877789999999999999
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.++++++
T Consensus 78 ~~~l~e~ 84 (447)
T TIGR02717 78 PQVVEEC 84 (447)
T ss_pred HHHHHHH
Confidence 9999887
No 275
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.55 E-value=0.0085 Score=62.61 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~~ 134 (341)
..+|-|+|+|++|+.+++.|.+.|. ++++.|.|+++.+.+++ .|. ...| ..+. ++++|.+++++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 4579999999999999999999884 89999999999998876 465 2222 1222 4589999999986
Q ss_pred HH-HHHHHHHhhhcc
Q psy316 135 QY-LDSAIQGLVNDK 148 (341)
Q Consensus 135 ~~-v~~vl~~i~~~~ 148 (341)
+. ...++... +..
T Consensus 475 ~~~n~~i~~~a-r~~ 488 (621)
T PRK03562 475 PQTSLQLVELV-KEH 488 (621)
T ss_pred HHHHHHHHHHH-HHh
Confidence 44 33444444 443
No 276
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.54 E-value=0.0039 Score=58.78 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=38.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP 110 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~ 110 (341)
.+++.|+|+|-.|++++..|.+.|. .+|++++|++++++.+.+.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV---QKLQVADLDTSRAQALADV 170 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHH
Confidence 3679999999999999999999885 5899999999998887653
No 277
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.54 E-value=0.022 Score=57.00 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=50.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhcC-CCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNM-AQAVATSLIRTG-LCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~m-G~aia~~L~~~G-~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.. +-.+.+.|++.. .++..+|.++|.++++++.+. ++.| + .++|..++++.||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 69999999874 224556666552 245679999999998876532 2223 3 57889999999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
.+.
T Consensus 81 ~ir 83 (437)
T cd05298 81 QIR 83 (437)
T ss_pred Eee
Confidence 874
No 278
>KOG2666|consensus
Probab=96.47 E-value=0.29 Score=46.47 Aligned_cols=104 Identities=24% Similarity=0.364 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------------C--c-cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------------D--F-ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------------g--~-~~~s~~e~~~~a 125 (341)
+||.-||+|-.|..-..-+.- . +|.-+|++.|.+..+...+.... | + ..++.+..++++
T Consensus 2 ~kiccigagyvggptcavia~-k-cp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIAL-K-CPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred ceEEEecCcccCCcchheeee-c-CCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 689999999999876654432 2 56678999999988888776531 1 2 456778889999
Q ss_pred CEEEEeeC-h-H-------------HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 126 EYVFLAMK-P-Q-------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 126 DvIilaV~-~-~-------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
|+||++|. | + .++++.+-+ .+.- ...++|+-- +.++ .+.++..+.
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~i-a~~s--~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMI-ADVS--VSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHH-HHhc--cCCeEEEee-ccccchHHHHHHHHHh
Confidence 99999983 2 1 134444545 5554 567788754 3444 356666665
No 279
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.45 E-value=0.011 Score=56.97 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=60.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCCccccChHHH-hhcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV~~~~v~ 138 (341)
.++||+|||+ |..|.-+.+.|.++.| |..++..... +..+.-.+..+ .+.+.+.++. ..++|++|+|+|...-.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~-~~~v~~~~~~~~~~~Dvvf~a~p~~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGK-SVTVQDAAEFDWSQAQLAFFVAGREASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCc-ceEEEeCchhhccCCCEEEECCCHHHHH
Confidence 4679999998 9999999998887543 4456654432 22221122221 2322233333 26899999999998777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++..++ . ..+..||++++.
T Consensus 81 ~~~~~~----~--~~g~~VIDlS~~ 99 (336)
T PRK08040 81 AYAEEA----T--NAGCLVIDSSGL 99 (336)
T ss_pred HHHHHH----H--HCCCEEEECChH
Confidence 777665 3 457789988653
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.45 E-value=0.012 Score=59.91 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc--cC---------------hH------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL--ND---------------NH------ 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~--~s---------------~~------ 119 (341)
..|+.|||+|.+|...++.+...|. +|+++|+++++++..++ +|. .. +. ..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~D~~~~rle~aes-lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAFDTRPEVAEQVES-MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 5689999999999999888888884 79999999999887766 675 11 11 01
Q ss_pred ----HHhhcCCEEEEeeC------hHHH-HHHHHHhhhcccccCCCcEEEEec
Q psy316 120 ----RIIKEAEYVFLAMK------PQYL-DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 120 ----e~~~~aDvIilaV~------~~~v-~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.+|+||-|+- |..+ ++.++.+ +++.+|+.+.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~m-------kpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASM-------KPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhc-------CCCCEEEEEc
Confidence 11246999999984 2232 5555554 5677777664
No 281
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.43 E-value=0.024 Score=50.87 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-c-cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-L-NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~-~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|.+|..-++.|++.|. +|++++.+.. .++.+.++..+ . . .-..+.+..+|+||.|+....+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA----QLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNR 84 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC----EEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHH
Confidence 4689999999999999999999994 8999987543 34445443233 1 1 112345789999999998765444
No 282
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.41 E-value=0.019 Score=57.20 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=49.1
Q ss_pred CeEEEEcccHHHH-HHHHHHHhc-CCCCCCeEEEEcCC-hhhhhhcC-------cCCC----c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQ-AVATSLIRT-GLCIPAQIIASAPS-ERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~-aia~~L~~~-G~~~~~~V~v~~r~-~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIi 129 (341)
|||+|||+|..-+ .+.+.|++. ..++..+|.++|.+ +++++... ++.| + .+++..+++.+||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6899999998643 455666653 22455789999999 78865321 2223 3 5678999999999999
Q ss_pred Eee
Q psy316 130 LAM 132 (341)
Q Consensus 130 laV 132 (341)
.+.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 987
No 283
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.40 E-value=0.0072 Score=58.12 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=46.1
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC------------------Cc-cccChHHHhhcCC
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM------------------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~~aD 126 (341)
|||+|+|+||..+++.+.+.. .-+| .+.+.+++....++..+ ++ ...+++++...+|
T Consensus 1 VaInG~GrIGr~varav~~~~---d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD---DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC---CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 689999999999999987643 2344 46777777543333222 23 3456788888999
Q ss_pred EEEEeeCh
Q psy316 127 YVFLAMKP 134 (341)
Q Consensus 127 vIilaV~~ 134 (341)
+|+.|+|.
T Consensus 78 iVve~Tp~ 85 (333)
T TIGR01546 78 IVVDATPG 85 (333)
T ss_pred EEEECCCC
Confidence 99999985
No 284
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.39 E-value=0.0068 Score=56.80 Aligned_cols=66 Identities=24% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
.+++.|+|+|-.|.+++..|.+.|. .+|++++|++++++.+.+.++. ...+. ....+|+||=|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~---~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF---TDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 3579999999999999999999885 5799999999999888765443 11111 11347888887764
No 285
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.39 E-value=0.14 Score=46.11 Aligned_cols=168 Identities=14% Similarity=0.229 Sum_probs=97.9
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHHH-HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ ++++..|++.++|+|+.=+|-..+ .++++.+ .+-+ .++.+|-+ +..++..++.+.+..... .+-. +-..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkf-iddi--pegaivth-actipttkf~kifed~gr--edln-vtsy 198 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKF-IDDI--PEGAIVTH-ACTIPTTKFKKIFEDMGR--EDLN-VTSY 198 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHH-HhcC--CCCceEee-ecccchHHHHHHHHHhCc--cccc-eecc
Confidence 45 566778899999999988864322 2344444 3334 66766554 456777777666542110 2233 4455
Q ss_pred cCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhc-CCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHH-HcC
Q psy316 190 MPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQG-GIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAV-KQG 267 (341)
Q Consensus 190 mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~-~~G 267 (341)
+|..-.+ .+|...+..|- .++ +..+.+.+|=+.. |..+.++..++..++-+++...+.+|.-+-+..++.. -+|
T Consensus 199 hpg~vpe-mkgqvyiaegy-ase--eavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilg 274 (343)
T COG4074 199 HPGTVPE-MKGQVYIAEGY-ASE--EAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILG 274 (343)
T ss_pred CCCCCcc-ccCcEEEeccc-ccH--HHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5543222 34555555553 345 6666665555443 5566677777766666655545555544445555543 468
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Q psy316 268 IPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 268 l~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
-|.+-++.+..+.+.-...++++
T Consensus 275 apadfaqmma~eal~qi~~lmee 297 (343)
T COG4074 275 APADFAQMMAVEALQQIAKLMEE 297 (343)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777666666655
No 286
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.39 E-value=0.033 Score=49.66 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.++++|..+|. .+++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV---g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI---GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEEECCc
Confidence 35789999999999999999999996 6899998653
No 287
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.38 E-value=0.0057 Score=52.95 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC--ccc--------------------c----C
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD--FAL--------------------N----D 117 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g--~~~--------------------~----s 117 (341)
+.||.|+|+|+.|..-++.+...|. ++++++.++++.+++..... +.. . .
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA----EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-----EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC----EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999885 99999999887776554221 111 1 1
Q ss_pred hHHHhhcCCEEEEee--ChHHHHHHH-HHhhhcccccCCCcEEEEecC
Q psy316 118 NHRIIKEAEYVFLAM--KPQYLDSAI-QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 118 ~~e~~~~aDvIilaV--~~~~v~~vl-~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.++.+|+||.+. +......++ ++. ...+ +++.+|++++.
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~-~~~m--~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEM-VKSM--KPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHH-HHTS--STTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHH-hhcc--CCCceEEEEEe
Confidence 234577899999865 222222222 222 2334 68889998754
No 288
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.36 E-value=0.017 Score=52.06 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|.|||+|.+|+.++..|...|. .+++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV---GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 4689999999999999999999996 579999886
No 289
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.30 E-value=0.023 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|..+|. .+|+++|++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 45789999999999999999999996 689999876
No 290
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.30 E-value=0.0073 Score=54.70 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=63.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----------hhhhhcCcCCCc-cc-----cChHHHh-hcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----------RFKLHWPEPMDF-AL-----NDNHRII-KEA 125 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----------e~~~~l~~~~g~-~~-----~s~~e~~-~~a 125 (341)
+.++|+|.|+|++|+.+++.|.+.|. ..|.++|.+. +.++...+..++ .. .+..++. .+|
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 46899999999999999999999984 4677899887 655544432222 11 1223332 379
Q ss_pred CEEEEeeChHHHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 126 EYVFLAMKPQYLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 126 DvIilaV~~~~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
|++|.|...+.+.. ...+ + + -++|+--+++-....-.+.|.
T Consensus 99 DVlipaA~~~~i~~~~a~~-----l--~-a~~V~e~AN~p~t~~a~~~L~ 140 (217)
T cd05211 99 DIFAPCALGNVIDLENAKK-----L--K-AKVVAEGANNPTTDEALRILH 140 (217)
T ss_pred cEEeeccccCccChhhHhh-----c--C-ccEEEeCCCCCCCHHHHHHHH
Confidence 99999988764332 2222 3 2 356776655433334444454
No 291
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.29 E-value=0.015 Score=56.29 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=58.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC-hHHHhhcCCEEEEeeChHHHHHHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND-NHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s-~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
||+|||+ |..|..+++.|.++++ +..++.+..+....-+.+.- .|. ...+ ..+.+.++|++|+|++...-.++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~as~~~~g~~~~~-~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLLASDRSAGRKVTF-KGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEEeccccCCCeeee-CCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 6899995 9999999999988775 33445555444333223322 122 2211 134457899999999998877777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+ + ..+..||+..+
T Consensus 79 ~~~----~--~~G~~VID~ss 93 (339)
T TIGR01296 79 PKA----A--KCGAIVIDNTS 93 (339)
T ss_pred HHH----H--HCCCEEEECCH
Confidence 655 3 45668888754
No 292
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.27 E-value=0.0079 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhcCcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHWPEP 110 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l~~~ 110 (341)
+++.|||+|-.+++++..|...|. .+|++++|++ ++++.++++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~nRt~~~~~ka~~la~~ 170 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGL---KEIKLFNRRDEFFDKALAFAQR 170 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCccHHHHHHHHHHH
Confidence 579999999999999999998884 6899999995 477766553
No 293
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.013 Score=55.19 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|. +|..++..|.+.|. .|+++++.. .+..+.+++||+||.|++...+ +.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~---i~ 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNA----SVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL---VT 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----eEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc---cC
Confidence 57999999988 99999999998884 899887642 1456778999999999964332 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 217 ---~~~v--k~gavVIDv 229 (286)
T PRK14175 217 ---KDVV--KEGAVIIDV 229 (286)
T ss_pred ---HHHc--CCCcEEEEc
Confidence 1235 678888887
No 294
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.22 E-value=0.0093 Score=57.45 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV 132 (341)
.+++.|||+|.||...+++|.++|. .+|++++|+.+. .. ++-......+....+|+||.|+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~nRt~~~-~~----~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY---SRITFCSRQQLT-LP----YRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC---CEEEEEcCCccc-cc----hhhhhhhhhhcccCCCEEEEcC
Confidence 5799999999999999999999985 589999999753 11 2110001113346889999873
No 295
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.21 E-value=0.025 Score=53.58 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=27.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
||.|||+|.+|+.+++.|...|. .+|+++|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV---g~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV---RHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEECC
Confidence 68999999999999999999996 56777664
No 296
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.0092 Score=59.24 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=44.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
.+|.|||.|.+|.++|+.|.+.|. +|+++|+++........ ..- ...+.....+++|++|.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~----~V~g~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGV----YVIGVDKSLEALQSCPY-IHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCC----EEEEEeCCccccchhHH-HhhhhcCCcHHHhcCCCEEEECCC
Confidence 579999999999999999999984 89999987654332100 000 11233334467999988874
No 297
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.19 E-value=0.0098 Score=47.24 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=49.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.+++.|||.|.+|..=++.|++.|. +|+++.++.+..+.. .........+.+..+|+||.|+.+..+.+.+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vis~~~~~~~~~---i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~ 79 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGA----KVTVISPEIEFSEGL---IQLIRREFEEDLDGADLVFAATDDPELNEAIYA 79 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTB----EEEEEESSEHHHHTS---CEEEESS-GGGCTTESEEEE-SS-HHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCchhhhhhH---HHHHhhhHHHHHhhheEEEecCCCHHHHHHHHH
Confidence 4689999999999999999999984 999998874222211 111111223557889999999988776665544
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
.
T Consensus 80 ~ 80 (103)
T PF13241_consen 80 D 80 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 298
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.19 E-value=0.15 Score=49.84 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcCC----------------C---c--cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEPM----------------D---F--ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~~----------------g---~--~~~s~~ 119 (341)
.+|.|+|+|..+--+|..+.+.+. .+|-+.+|.-.+.++ +++.- | + ...+.+
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGN---CRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccC---ceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHH
Confidence 479999999999999998887763 579899886555443 33210 1 1 234456
Q ss_pred HHhhcCCEEEEeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCCHHHH-HHhccccCCCCCCCCeEEEEc-------
Q psy316 120 RIIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDLETL-KKKLSVLVPNPNDAPTIIRVM------- 190 (341)
Q Consensus 120 e~~~~aDvIilaV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~~~~l-~~~l~~~~~~~~~~~~vvr~m------- 190 (341)
++..+=|.+|+|||.++..+|+++| .+ .| +.=+-||=++.......+ +..+.... .+.. |+.+.
T Consensus 79 ~i~g~WdtlILavtaDAY~~VL~ql-~~~~L--~~vk~iVLvSPtfGS~~lv~~~l~~~~---~~~E-VISFStY~gdTr 151 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADAYLDVLQQL-PWEVL--KRVKSIVLVSPTFGSHLLVKGFLNDLG---PDAE-VISFSTYYGDTR 151 (429)
T ss_pred HhcccccEEEEEechHHHHHHHHhc-CHHHH--hhCCEEEEECcccchHHHHHHHHHhcC---CCce-EEEeecccccce
Confidence 6777889999999999999999987 43 33 222333334445554433 22332100 1122 22211
Q ss_pred ---CCchhhh-cCc--eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE-cC
Q psy316 191 ---PNTAMKY-GKG--ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI-IP 234 (341)
Q Consensus 191 ---pn~p~~v-~~g--~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~-v~ 234 (341)
...|-.+ -.| ..+..+...... ....++..+|+.+|.... ++
T Consensus 152 ~~d~~~~~~vlt~~vK~kiYigSt~~~s--~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 152 WSDGEQPNRVLTTAVKKKIYIGSTHSNS--PELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred eccCCCcceehhhhhhceEEEEeCCCCC--hHHHHHHHHHHHcCCeEEEeC
Confidence 0111010 011 122222223334 788899999999998654 44
No 299
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.18 E-value=0.031 Score=54.55 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh---cCcCCCcccc-ChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH---WPEPMDFALN-DNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~---l~~~~g~~~~-s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|+|||+ |..|.-|.+.|+.+..++-.++..+..+ +.... +..+...... ...+...++|++|+|+|...-.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 68999998 9999999987776655554456665432 22222 2221111211 11244578999999999988777
Q ss_pred HHHHhhhcccccCCC--cEEEEecC
Q psy316 140 AIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+..++ . ..| .+||+.++
T Consensus 81 ~~~~~-~-----~aG~~~~VID~Ss 99 (369)
T PRK06598 81 VYPKL-R-----AAGWQGYWIDAAS 99 (369)
T ss_pred HHHHH-H-----hCCCCeEEEECCh
Confidence 77665 3 345 56888754
No 300
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.17 E-value=0.044 Score=52.97 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh--------cCCCCCCe-EEEEcCChhh----------hhhcCcCCCc--cc------
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR--------TGLCIPAQ-IIASAPSERF----------KLHWPEPMDF--AL------ 115 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~--------~G~~~~~~-V~v~~r~~e~----------~~~l~~~~g~--~~------ 115 (341)
|.++|+++|+|++|+.+++.|.+ .|. ..+ +.+.+++... +....++.+. ..
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 56899999999999999998876 342 113 3456654221 1111121221 11
Q ss_pred --cChHHHh--hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC---CCHHHHHHhc
Q psy316 116 --NDNHRII--KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG---VDLETLKKKL 173 (341)
Q Consensus 116 --~s~~e~~--~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~l 173 (341)
.+..+.+ .++|+||-++.+....+++... + ..++-||+...+ ...+++.+..
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l--~~G~~VVtanK~~la~~~~el~~la 137 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA----L--KEGKSVVTSNKPPIAFHYDELLDLA 137 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH----H--hhCCcEEECCHHHHHhCHHHHHHHH
Confidence 1456666 4799999999887777766554 4 455556655444 3344554443
No 301
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.17 E-value=0.02 Score=52.04 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCE
Confidence 45789999999999999999999996 6888887653
No 302
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.12 E-value=0.0095 Score=56.28 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=35.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhcCc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l~~ 109 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++ ++++.+.+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~---~~V~I~~R~~~~~~~a~~l~~ 171 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA---KEITIFNIKDDFYERAEQTAE 171 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCchHHHHHHHHHH
Confidence 4578899999999999999999985 4699999996 56655443
No 303
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.10 E-value=0.024 Score=54.91 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEc--CChhhhhhcCcCCCc-c-ccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASA--PSERFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~--r~~e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+||||||+ |..|..|.+.|.++-.++-.++.+.. |+..+.-.+..+ .+ . ..+. +.+.+.|++|+|+|...-.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~~~~~-~~~~~~Divf~a~~~~~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQEAKI-NSFEGVDIAFFSAGGEVSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-ceEEEeCCH-HHhcCCCEEEECCChHHHH
Confidence 368999998 99999999988865444434454433 332222222221 22 1 1233 3457899999999998777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++...+ . ..+..||+.++-
T Consensus 83 ~~~~~~----~--~~G~~VID~Ss~ 101 (347)
T PRK06728 83 QFVNQA----V--SSGAIVIDNTSE 101 (347)
T ss_pred HHHHHH----H--HCCCEEEECchh
Confidence 777665 2 467889988553
No 304
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.09 E-value=0.0097 Score=54.28 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC----------ChhhhhhcCcCCCc--cc-----cChHHHh-h
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP----------SERFKLHWPEPMDF--AL-----NDNHRII-K 123 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r----------~~e~~~~l~~~~g~--~~-----~s~~e~~-~ 123 (341)
+.++|+|.|.|++|+.+++.|.+.|. +|+ +.|. +.+.+..++++.|. .. .++.++. .
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~ 105 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGA----KVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL 105 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence 56899999999999999999999985 665 7777 55555544443331 11 1223333 2
Q ss_pred cCCEEEEeeChHHHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 124 EAEYVFLAMKPQYLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 124 ~aDvIilaV~~~~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+|||++-|.+...+. +.+..+ + -++|+--+++--...-.+.|.
T Consensus 106 ~~Dvlip~a~~~~i~~~~~~~l-------~-a~~I~egAN~~~t~~a~~~L~ 149 (227)
T cd01076 106 DCDILIPAALENQITADNADRI-------K-AKIIVEAANGPTTPEADEILH 149 (227)
T ss_pred cccEEEecCccCccCHHHHhhc-------e-eeEEEeCCCCCCCHHHHHHHH
Confidence 789999998766542 233333 2 346665554322233344444
No 305
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.08 E-value=0.043 Score=48.90 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.++++|..+|. .+++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV---g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI---DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEECCc
Confidence 35789999999999999999999996 6899998753
No 306
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.016 Score=58.49 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-c-ChHHHhhcCCEEEEe--eChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-N-DNHRIIKEAEYVFLA--MKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-~-s~~e~~~~aDvIila--V~~~ 135 (341)
.+||.|+|+|..|.++++.|.+.|. +|+++|+++.....+.++.|+ .. . ...+.+.++|+||.+ +|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGC----DVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC----EEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 4579999999999999999999994 899999876655444333576 32 2 234556789999876 4543
No 307
>KOG0068|consensus
Probab=95.92 E-value=0.02 Score=54.57 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.+++|+||+|++|+-++..+..-|. .++.+|. .+. +...+ +|+...+.+|++..||+|=+=+|- ...+.++
T Consensus 146 GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~dpi~~~--~~~~a-~gvq~vsl~Eil~~ADFitlH~PLtP~T~~li 218 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGSEVAVRAKAMGM----HVIGYDPITPM--ALAEA-FGVQLVSLEEILPKADFITLHVPLTPSTEKLL 218 (406)
T ss_pred ccEEEEeecccchHHHHHHHHhcCc----eEEeecCCCch--HHHHh-ccceeeeHHHHHhhcCEEEEccCCCcchhhcc
Confidence 3789999999999999999888775 6666664 322 22333 687556789999999999998883 3445555
Q ss_pred HH-hhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 QG-LVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~~-i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.. . ...+ ++|.-||.++-|- +...|-+.+.
T Consensus 219 n~~t-fA~m--KkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 219 NDET-FAKM--KKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred CHHH-HHHh--hCCcEEEEecCCceechHHHHHHHh
Confidence 22 1 1234 6788889887543 3444444443
No 308
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.90 E-value=0.039 Score=53.39 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=54.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------------Cccc-cChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------------DFAL-NDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------------g~~~-~s~~e~~~~aDvI 128 (341)
+||+|+|+ |.||..+++.|..+.. .+|. ++++++..-+.+.+.+ ...+ ....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~---~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY---FELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---ceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999996 9999999998877652 2554 4454433222222111 0111 1122345789999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
|+|+|.....++...+ . ..+..+|+.++
T Consensus 78 f~a~p~~~s~~~~~~~-~-----~~G~~VIDlsg 105 (341)
T TIGR00978 78 FSALPSEVAEEVEPKL-A-----EAGKPVFSNAS 105 (341)
T ss_pred EEeCCHHHHHHHHHHH-H-----HCCCEEEECCh
Confidence 9999998777776554 2 34556676644
No 309
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.88 E-value=0.014 Score=55.13 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=77.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---c-c---cChHHHhhcCCEEEEee--ChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---A-L---NDNHRIIKEAEYVFLAM--KPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~-~---~s~~e~~~~aDvIilaV--~~~ 135 (341)
-|+.|||.|-.|+.-|+-..--| .+|++.++|.+++..+...++. . . .+.++.+..+|+||=+| |-.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg----A~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG----ADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccC----CeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 48999999999998888766555 4999999999999988776653 1 1 23466788999999887 311
Q ss_pred HHH-HHHHHhhhcccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 136 YLD-SAIQGLVNDKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 136 ~v~-~vl~~i~~~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
... =+.+++ ...+ +++.+||+++- |-.+++... ...-.|......++-.+.||.|.++-
T Consensus 245 kaPkLvt~e~-vk~M--kpGsVivDVAiDqGGc~Et~~~-TTh~~PtY~~~gvvhY~VaNmPgaVp 306 (371)
T COG0686 245 KAPKLVTREM-VKQM--KPGSVIVDVAIDQGGCFETSHP-TTHDDPTYEVDGVVHYGVANMPGAVP 306 (371)
T ss_pred CCceehhHHH-HHhc--CCCcEEEEEEEcCCCceecccc-ccCCCCceeecCEEEEecCCCCcccc
Confidence 111 122333 3344 78999998752 333555421 11000110011103356788887653
No 310
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.83 E-value=0.032 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCC
Confidence 45789999999999999999999996 578887764
No 311
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.82 E-value=0.039 Score=50.72 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
..||.|+|+|.+|+.++..|...|. .+++++|.+.-....|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCcccccCcc
Confidence 4689999999999999999999996 68999888654443443
No 312
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.73 E-value=0.18 Score=46.24 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.+||+|.+|+.+++.|...|+ .+++++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 68999999999999999999996 578887764
No 313
>PRK08328 hypothetical protein; Provisional
Probab=95.69 E-value=0.054 Score=49.48 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
...||.|||+|.+|+.++..|...|. .+++++|.+.-....+..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lvD~D~ve~sNL~R 69 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV---GRILLIDEQTPELSNLNR 69 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCccChhhhcc
Confidence 35689999999999999999999996 689999876544444443
No 314
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.69 E-value=0.1 Score=46.96 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cccC--hHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALND--NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~s--~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|..|..=++.|++.|. +|+++.... ..+..+.++.++ .... ..+.+..+++||.|+.+..+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~ 87 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA----DVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNE 87 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC----EEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHH
Confidence 4789999999999999999999994 899887655 445555544343 1111 1233455999999999877666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
-+.+.
T Consensus 88 ~i~~~ 92 (210)
T COG1648 88 RIAKA 92 (210)
T ss_pred HHHHH
Confidence 55443
No 315
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.64 E-value=0.029 Score=55.00 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|...|. .+++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 45789999999999999999999996 589999886
No 316
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.59 E-value=0.048 Score=51.93 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=54.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.||+|+|+ |-.|.-+.+.|..+-. -++. +..++ + +.. .+.+++++++|++|+|+|.....+...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~---~el~~l~s~~--~---~~~------~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD---IELLSIAPDR--R---KDA------AERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC---eEEEEEeccc--c---cCc------CCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 58999987 9999999998887642 2333 33332 1 111 134456678999999999988777776
Q ss_pred HhhhcccccCCCcEEEEecC
Q psy316 143 GLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a 162 (341)
.+ . ..+..||++++
T Consensus 68 ~~----~--~~g~~VIDlSa 81 (310)
T TIGR01851 68 LV----D--NPNTCIIDAST 81 (310)
T ss_pred HH----H--hCCCEEEECCh
Confidence 65 2 45778898754
No 317
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.034 Score=56.42 Aligned_cols=66 Identities=20% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc--cChHHHhhcCCEEEEee
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL--NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~--~s~~e~~~~aDvIilaV 132 (341)
...++|.|+|+|..|.+.++.|.+.|. +|+++|++++..+.+.+ .|+ .. ....+.+.++|+||.+-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA----RPTVCDDDPDALRPHAE-RGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHh-CCCEEEcCcchHhHhhcCCEEEECC
Confidence 345789999999999999998888884 99999988766655544 576 32 23345577899999875
No 318
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.57 E-value=0.036 Score=50.00 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=47.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCCCc--c---cc---ChHHHhhcCCEEEEeeC
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPMDF--A---LN---DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~g~--~---~~---s~~e~~~~aDvIilaV~ 133 (341)
|.|+|+ |++|+.+++.|++.+ ++|.+..|++. ..+.+.+ .|+ + .. +..++++.+|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~----~~V~~l~R~~~~~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG----FSVRALVRDPSSDRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT----GCEEEEESSSHHHHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCC----CCcEEEEeccchhhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 689986 999999999999977 48999988763 3555655 464 1 12 23456789999999998
No 319
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.57 E-value=0.034 Score=52.83 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---cc---ChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LN---DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~---s~~e~~~~aDvIilaV~ 133 (341)
|||.|+|+ |.+|+.+++.|++.|+ +|++..|++++...+.. .++ . .. +..++++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 58999985 9999999999999984 99999998766554433 243 1 12 23456788999998753
No 320
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.55 E-value=0.04 Score=51.93 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCCcCCCCCCCCcccC-CCC-CCCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHH
Q psy316 44 RPVRKSDMGMEDSVEH-HVP-MWTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~~-m~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e 120 (341)
+-.+|+|.+.-..+++ +++ -.+++.|||.|. .|.+++..|.+.|. +|++++|.. .+..+
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~~~~t--------------~~L~~ 198 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTICHSRT--------------QNLPE 198 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEEeCCc--------------hhHHH
Confidence 3456666544433332 233 347899999998 99999999998883 899998721 13445
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++++|+||-|+.... .+. ...+ +++.+|+++
T Consensus 199 ~~~~aDIvI~AtG~~~---~v~---~~~l--k~gavViDv 230 (283)
T PRK14192 199 LVKQADIIVGAVGKPE---LIK---KDWI--KQGAVVVDA 230 (283)
T ss_pred HhccCCEEEEccCCCC---cCC---HHHc--CCCCEEEEE
Confidence 5688999999994221 121 1235 677788776
No 321
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.52 E-value=0.012 Score=47.53 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHhcCCC-CCCeEEEEcCChhhhhh-cC-cCCCc-cccChHHHhh--cCCEEEEeeChHHHHHHHHHh
Q psy316 71 GAGNMAQAVATSLIRTGLC-IPAQIIASAPSERFKLH-WP-EPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 71 G~G~mG~aia~~L~~~G~~-~~~~V~v~~r~~e~~~~-l~-~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~vl~~i 144 (341)
|+|++|+.+++.|.+.... .-.-+.+++|+ ..... .. ...+. ...+.++++. ..|+||-|+.++.+.+.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999999999876310 01224578887 21111 11 10122 5667888887 899999999888887776655
Q ss_pred hhcccccCCCcEEEEecC
Q psy316 145 VNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 145 ~~~~l~~~~~~iIVs~~a 162 (341)
| ..+.-||+...
T Consensus 80 ----L--~~G~~VVt~nk 91 (117)
T PF03447_consen 80 ----L--ERGKHVVTANK 91 (117)
T ss_dssp ----H--HTTCEEEES-H
T ss_pred ----H--HCCCeEEEECH
Confidence 4 45666665543
No 322
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.46 E-value=0.015 Score=51.14 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=47.1
Q ss_pred eEEEEcccHHHHH--HHHHHHhcCCCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQA--VATSLIRTGLCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~a--ia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIila 131 (341)
||+|||+|..-.. +..-+.....++..+|.++|+++++++... ++.| + .++|..++++.+|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 7999999976554 333344434345568999999999887422 2223 2 578899999999999999
Q ss_pred eChHH
Q psy316 132 MKPQY 136 (341)
Q Consensus 132 V~~~~ 136 (341)
+....
T Consensus 81 irvGg 85 (183)
T PF02056_consen 81 IRVGG 85 (183)
T ss_dssp --TTH
T ss_pred eeecc
Confidence 97643
No 323
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.41 E-value=0.066 Score=51.30 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE--EEEcCChhhh-hhcCcC-CCcccc--ChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQI--IASAPSERFK-LHWPEP-MDFALN--DNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V--~v~~r~~e~~-~~l~~~-~g~~~~--s~~e~~~~aDvIilaV~~~~ 136 (341)
+++|||+|+ |..|+.|.+.|.+.. ++-..+ +.+.|+..+. -.+..+ .++ -. -.....+++|++|.|.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~~~~AS~rSaG~~~~~f~~~~~~v-~~~~~~~~~~~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEELVLLASARSAGKKYIEFGGKSIGV-PEDAADEFVFSDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceEEEEecccccCCccccccCccccC-ccccccccccccCCEEEEeCchHH
Confidence 368999987 999999999998864 333334 3445554332 233331 122 11 12234568999999999877
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchh-hh----cCceEEEEeCCCCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAM-KY----GKGITGMCHDVHLD 211 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-~v----~~g~~~l~~~~~~~ 211 (341)
-+++...+ . ..|.+||+.++.. +.- ++.+ + ++|.... .. ..| .+..+++++
T Consensus 79 s~~~~p~~-~-----~~G~~VIdnsSa~------Rm~-------~DVP-L--VVPeVN~~~l~~~~~rg--~IianpNCs 134 (334)
T COG0136 79 SKEVEPKA-A-----EAGCVVIDNSSAF------RMD-------PDVP-L--VVPEVNPEHLIDYQKRG--FIIANPNCS 134 (334)
T ss_pred HHHHHHHH-H-----HcCCEEEeCCccc------ccC-------CCCC-E--ecCCcCHHHHHhhhhCC--CEEECCChH
Confidence 67777665 3 4678899875432 111 2333 2 2332111 11 123 345566665
Q ss_pred ccHHHHHHHHHHHHhcCCe
Q psy316 212 KESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~ 230 (341)
. +...-.+.+|++..|..
T Consensus 135 t-~~l~~aL~PL~~~~~i~ 152 (334)
T COG0136 135 T-IQLVLALKPLHDAFGIK 152 (334)
T ss_pred H-HHHHHHHHHHHhhcCce
Confidence 4 13345577888887743
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.034 Score=56.15 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=45.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-h----hhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-F----KLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~----~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
.++|.|||+|..|.++|..|.+.|. +|+++++++. . .+.+.+ .|+ . .....+....+|+||++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~d~~~~~~~~~~~~~l~~-~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA----RVTVVDDGDDERHRALAAILEA-LGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhhhHHHHHHHHH-cCCEEEECCCccccCCCCEEEECC
Confidence 4689999999999999999999985 8999986542 1 233444 476 2 222222345699999886
No 325
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.37 E-value=0.18 Score=47.67 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
+.||.|.|. |++|..+.++|.+.|+ ..++..++.. -.+.+ .|+ ...+..++-.. .|+.+++||+..+.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~---~~v~pVnp~~-~~~~v---~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGT---NIVGGVTPGK-GGTTV---LGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCC---CEEEEECCCC-CCCeE---eCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 468999998 9999999999999885 2555555541 01222 466 67788887776 899999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++++. ... .- +.+|-+++|...+
T Consensus 81 ~l~e~-~~~---gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 81 AILEA-IDA---GI-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHH-HHC---CC-CEEEEECCCCCHH
Confidence 99887 331 11 2333345787754
No 326
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.29 E-value=0.064 Score=52.02 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=52.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccCh-H--------HHh--hcCCEEEEeeC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDN-H--------RII--KEAEYVFLAMK 133 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~-~--------e~~--~~aDvIilaV~ 133 (341)
++.|+|+|.+|...+..+...|. .+|++.|+++++++..++..+. ...+. . +.. ..+|++|-|+-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 79999999999987776666663 6899999999998877663444 22221 1 111 24899999996
Q ss_pred -hHHHHHHHHHh
Q psy316 134 -PQYLDSAIQGL 144 (341)
Q Consensus 134 -~~~v~~vl~~i 144 (341)
+..+.+.++-+
T Consensus 248 ~~~~~~~ai~~~ 259 (350)
T COG1063 248 SPPALDQALEAL 259 (350)
T ss_pred CHHHHHHHHHHh
Confidence 34455555544
No 327
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.26 E-value=0.12 Score=48.08 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+++++.|-|+ +.+|..+|+.|.+.|+ ++++..|++++++++++++ ++.. ..++-++++ .++.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~----~liLvaR~~~kL~~la~~l-------~~~~-~v~v~vi~~DLs~~~~~~ 72 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY----NLILVARREDKLEALAKEL-------EDKT-GVEVEVIPADLSDPEALE 72 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCcHHHHHHHHHHH-------HHhh-CceEEEEECcCCChhHHH
Confidence 3456667788 9999999999999994 9999999999999887742 1111 234444444 467788
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.+..++ +... .+=.++|..+
T Consensus 73 ~l~~~l-~~~~--~~IdvLVNNA 92 (265)
T COG0300 73 RLEDEL-KERG--GPIDVLVNNA 92 (265)
T ss_pred HHHHHH-HhcC--CcccEEEECC
Confidence 888777 5431 1224677653
No 328
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.20 E-value=0.095 Score=51.33 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++..|...|. .+++++|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv---g~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV---GTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEeCC
Confidence 35689999999999999999999995 578888775
No 329
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.048 Score=54.43 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhh----hhcCcCCCc--cc-cChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFK----LHWPEPMDF--AL-NDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~----~~l~~~~g~--~~-~s~~e~~~~aDvIilaV~ 133 (341)
.+++.|+|+|.+|.++|+.|++.|+ +|++++++. +.+ +.+.+ .|+ .. ....+....+|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~d~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGA----KVILTDEKEEDQLKEALEELGE-LGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchHHHHHHHHHHHh-cCCEEEeCCcchhHhhcCCEEEECCC
Confidence 4789999999999999999999994 999999974 222 33333 354 22 223345578999999873
No 330
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.08 E-value=0.26 Score=46.56 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~ 138 (341)
..||.+.|. |.+|+.+.++|...|+ + .++..||.+ .+. -+|+ ...+..++-.. .|+.++++|+..+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~~V~p~~~~~~---v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGT----N-IVGGVTPGKGGTT---VLGLPVFDSVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCC----C-EEEEECCCCCcce---ecCeeccCCHHHHhhccCCCEEEEecCHHHHH
Confidence 357999997 9999999999999985 4 444445542 122 2477 77788887765 79999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
+++++. ... .-. .+|-+++|....
T Consensus 78 ~~l~e~-~~~---Gvk-~avIis~Gf~e~ 101 (286)
T TIGR01019 78 DAIFEA-IDA---GIE-LIVCITEGIPVH 101 (286)
T ss_pred HHHHHH-HHC---CCC-EEEEECCCCCHH
Confidence 999887 331 112 333356777644
No 331
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.062 Score=50.58 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|++ |..++..|.+.|. .|+++.+. +.+..+.+++||+||.+++...+ +.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~---i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGA----TVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV---LT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC----EEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc---cC
Confidence 478999999998 9999999998874 88887542 12466788999999999974332 21
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 217 ---~~~i--k~gavVIDV 229 (285)
T PRK14189 217 ---ADMV--KPGATVIDV 229 (285)
T ss_pred ---HHHc--CCCCEEEEc
Confidence 2235 788898876
No 332
>PRK06153 hypothetical protein; Provisional
Probab=95.02 E-value=0.076 Score=52.00 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|+|||+|-.|+.++..|.+.|. .+|+++|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEECCC
Confidence 4689999999999999999999995 477776653
No 333
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.91 E-value=0.042 Score=56.37 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM 111 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~ 111 (341)
.+++.|+|+|.+|.+++..|.+.|. +|++++|+.++++.+.+++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~----~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGA----RVVIANRTYERAKELADAV 422 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHh
Confidence 3678999999999999999999984 8999999999888776543
No 334
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.099 Score=49.22 Aligned_cols=70 Identities=13% Similarity=0.297 Sum_probs=53.9
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|||-|+ .|..++.-|.+.|. .|+++.+.- .++.+.+++||+||.++. |..+..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~v~~-- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGC----TVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGFIPG-- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCC----eEEEEECCC--------------CCHHHHHhhCCEEEEcCCCcccccH--
Confidence 57999999998 99999999988874 899887531 246678899999999994 443322
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
+ .+ +++.+||++
T Consensus 219 -~----~v--k~gavVIDv 230 (285)
T PRK10792 219 -E----WI--KPGAIVIDV 230 (285)
T ss_pred -H----Hc--CCCcEEEEc
Confidence 2 35 788899886
No 335
>PRK07411 hypothetical protein; Validated
Probab=94.86 E-value=0.11 Score=51.17 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..||.|||+|.+|+.+++.|..+|. .+++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 5689999999999999999999996 577777764
No 336
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.061 Score=53.98 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIila 131 (341)
+||.|||+|..|.+.++.|.+.|+ +|+++|+.+.....+.+ .|+ ......+.+.++|+||.+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~----~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGA----EVIAWDDNPASRAKAAA-AGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCC----EEEEECCChhhHHHHHh-cCccccCCChhHHcCCCEEEEC
Confidence 589999999999999999999994 99999987554444443 466 322122345689998864
No 337
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.068 Score=53.72 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-c-c-cChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-A-L-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~-~-~s~~e~~~~aDvIilaV 132 (341)
.+||+|+|+|.-|.++++.|.+.|+ +|+++|+++. ..+.+.+ .|+ . . ....+.+.++|+||.+-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~D~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAFDKKSEEELGEVSNELKE-LGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC----EEEEECCCCCccchHHHHHHHh-CCCEEEeCCCChHHhccCCEEEECC
Confidence 4689999999999999999999994 9999998642 1133544 466 2 2 22345567899999873
No 338
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.73 E-value=0.25 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.|||+|.+|+.++++|...|. .+|+++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEEcCC
Confidence 68999999999999999999996 688888864
No 339
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.73 E-value=0.1 Score=54.28 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=28.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
..||.|||+|.+|+.+++.|...|. .+|+++|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlVD~ 370 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFVDN 370 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEEcC
Confidence 3689999999999999999999996 46766664
No 340
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.71 E-value=0.099 Score=50.90 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV---GHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCCE
Confidence 45789999999999999999999996 5788877653
No 341
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.61 E-value=0.15 Score=49.81 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=56.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCCccccC--hHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMDFALND--NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g~~~~s--~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|||+|+ |..|+.|.+.|.....++-.++.+... +..+.-.+..+ .....+ ..+...+.|++|+|.+...-++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~-~~~v~~~~~~~~~~~vDivffa~g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT-TGTLQDAFDIDALKALDIIITCQGGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC-cceEEcCcccccccCCCEEEEcCCHHHHHH
Confidence 47999999 999999999998444345445555442 22222222221 111112 2235678999999999887666
Q ss_pred HHHHhhhcccccCCC--cEEEEecC
Q psy316 140 AIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+...+ . ..| .+||+.++
T Consensus 80 ~~p~~-~-----~aG~~~~VIDnSS 98 (366)
T TIGR01745 80 IYPKL-R-----ESGWQGYWIDAAS 98 (366)
T ss_pred HHHHH-H-----hCCCCeEEEECCh
Confidence 66555 3 355 67888754
No 342
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.50 E-value=0.41 Score=43.53 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-ccc--ChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALN--DNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~--s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||.|.+|..=++.|++.|. +|+|+.... ..+..+.+.-.+ ... -..+.+..+++||.|+.+..+..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~ 100 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC----YVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNN 100 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHH
Confidence 4689999999999998999999984 899987643 233344332122 111 11344688999999999887777
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
-+.+.
T Consensus 101 ~I~~~ 105 (223)
T PRK05562 101 KIRKH 105 (223)
T ss_pred HHHHH
Confidence 66555
No 343
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.49 E-value=0.13 Score=50.70 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|..+|. .+++++|.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv---g~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV---GTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC---CeEEEECCC
Confidence 45789999999999999999999996 577777754
No 344
>PLN02775 Probable dihydrodipicolinate reductase
Probab=94.46 E-value=0.65 Score=43.73 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=65.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhh--hh-hcCcCCCc-cc--cChHHHhh-----cCC-E
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERF--KL-HWPEPMDF-AL--NDNHRIIK-----EAE-Y 127 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~--~~-~l~~~~g~-~~--~s~~e~~~-----~aD-v 127 (341)
.+..||.+.|+ |+||+..++.+.+.++ ++. ..++.+.- .. .+.. .++ .. .+.++.+. .+| |
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g-~~v~~~~~~dl~~~l~~~~~~~~~~V 83 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCG-VEVRLVGPSEREAVLSSVKAEYPNLI 83 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceecc-ceeeeecCccHHHHHHHhhccCCCEE
Confidence 46679999999 9999999999988665 444 45554422 11 2222 144 33 67777662 489 7
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+|=-+.|..+.+.++.. . ..+.-+|.-+.|.+.++++++..
T Consensus 84 vIDFT~P~a~~~~~~~~-~-----~~g~~~VvGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 84 VVDYTLPDAVNDNAELY-C-----KNGLPFVMGTTGGDRDRLLKDVE 124 (286)
T ss_pred EEECCChHHHHHHHHHH-H-----HCCCCEEEECCCCCHHHHHHHHh
Confidence 77667787777776654 2 23333444557888888776544
No 345
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.44 E-value=0.09 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT 86 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~ 86 (341)
|||++||+|++|+.+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999998773
No 346
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.38 E-value=0.14 Score=47.51 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhc----CCCC---CCeEEEEcCCh----hh--hh----hcCcCCCc--cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT----GLCI---PAQIIASAPSE----RF--KL----HWPEPMDF--ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~----G~~~---~~~V~v~~r~~----e~--~~----~l~~~~g~--~~~s~~e~~~~a 125 (341)
.||.|+|+|.-|..+++.|... |.-. ..+|+++|+.- .+ +. .+..+..- ...++.|+++.+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~ 105 (255)
T PF03949_consen 26 QRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGA 105 (255)
T ss_dssp -EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH
T ss_pred cEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhc
Confidence 5899999999999999999988 8411 15789888741 11 11 11111111 224788888876
Q ss_pred --CEEEEe--eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 126 --EYVFLA--MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 126 --DvIila--V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
|++|=+ .+.-.-+++++.+ ..+ .+..+|..+++..+ .++..+|..
T Consensus 106 kPtvLIG~S~~~g~ft~evv~~M-a~~---~erPIIF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 106 KPTVLIGLSGQGGAFTEEVVRAM-AKH---NERPIIFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp --SEEEECSSSTTSS-HHHHHHC-HHH---SSSEEEEE-SSSCGGSSS-HHHHHHTTT
T ss_pred CCCEEEEecCCCCcCCHHHHHHH-hcc---CCCCEEEECCCCCCcccCCHHHHHhhCC
Confidence 988844 3444567788888 665 36778888888766 344445543
No 347
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.36 E-value=0.24 Score=46.00 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=44.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC---hHHHh------hc-CCEEEEee
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND---NHRII------KE-AEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s---~~e~~------~~-aDvIilaV 132 (341)
+|.|+|+ |.+|+.+++.|++.|+ +|.+..|++++.....-+ .+ ...+ ..+++ .. +|.||++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~~R~~~~~~~~~~~-~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVASRSSSSSAGPNEK-HVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEEeCCCccccCCCCc-cccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 4888987 9999999999999984 899999998765321111 11 1222 23344 34 89999887
Q ss_pred Ch
Q psy316 133 KP 134 (341)
Q Consensus 133 ~~ 134 (341)
++
T Consensus 76 ~~ 77 (285)
T TIGR03649 76 PP 77 (285)
T ss_pred CC
Confidence 63
No 348
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.27 Score=44.42 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|.| .|.+|.++++.|++.|. +|++.+|++++.+.+.+++ .+....+.+.++.+ .+..+.
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGR----DLALCARRTDRLEELKAEL-------LARYPGIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HhhCCCceEEEEEcCCCCHHHHH
Confidence 456788886 59999999999999984 8999999988766554321 11111233444333 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++++ ...+ .+=.++|..+
T Consensus 70 ~~~~~~-~~~~--~~id~vi~~a 89 (248)
T PRK08251 70 EVFAEF-RDEL--GGLDRVIVNA 89 (248)
T ss_pred HHHHHH-HHHc--CCCCEEEECC
Confidence 777666 4433 2223566553
No 349
>KOG0022|consensus
Probab=94.31 E-value=0.28 Score=46.65 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=58.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChH-------HHhh-----cCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNH-------RIIK-----EAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~-------e~~~-----~aDvIila 131 (341)
.+++|+|+|.+|.+.+.+-..+|. .+|+..|.|+++.+..++ +|+ .+-++. |.+. ..|+-|-|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GA---srIIgvDiN~~Kf~~ak~-fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc 269 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGA---SRIIGVDINPDKFEKAKE-FGATEFINPKDLKKPIQEVIIEMTDGGVDYSFEC 269 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCc---ccEEEEecCHHHHHHHHh-cCcceecChhhccccHHHHHHHHhcCCceEEEEe
Confidence 579999999999999999999985 799999999999888766 887 332332 2221 46788887
Q ss_pred e-ChHHHHHHHHHh
Q psy316 132 M-KPQYLDSAIQGL 144 (341)
Q Consensus 132 V-~~~~v~~vl~~i 144 (341)
+ .++.+++.+...
T Consensus 270 ~G~~~~m~~al~s~ 283 (375)
T KOG0022|consen 270 IGNVSTMRAALESC 283 (375)
T ss_pred cCCHHHHHHHHHHh
Confidence 7 467777777665
No 350
>PRK08223 hypothetical protein; Validated
Probab=94.31 E-value=0.29 Score=46.19 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|||+|-+|+.++..|..+|. .+++++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEEeCCC
Confidence 4689999999999999999999996 6888888753
No 351
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.34 Score=46.02 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++..|++++.+.+.+++ .+......+.++.+ .+..++.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~----~Vil~~R~~~~~~~~~~~l-------~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGA----EVILPVRNRAKGEAAVAAI-------RTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HHhCCCCceEEEEecCCCHHHHHHH
Confidence 45555554 8899999999999994 8999999988766543321 11111234545444 34567777
Q ss_pred HHHhhhcccccCCCcEEEEec
Q psy316 141 IQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++ .... .+=.++|..+
T Consensus 84 ~~~~-~~~~--~~iD~li~nA 101 (313)
T PRK05854 84 GEQL-RAEG--RPIHLLINNA 101 (313)
T ss_pred HHHH-HHhC--CCccEEEECC
Confidence 7666 4333 2224666654
No 352
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.27 E-value=0.47 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|+|+|.+|..++++|..+|. ..|+++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV---KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEEcCCc
Confidence 4689999999999999999999996 6888888653
No 353
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.29 Score=44.67 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|++++.|.| .|.+|..+++.|++.|. +|++.+|++++++.+.+++. . ..++.++.+ .+..+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~----~------~~~~~~~~~Dl~~~~~i~ 66 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGA----TLGLVARRTDALQAFAARLP----K------AARVSVYAADVRDADALA 66 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHhcc----c------CCeeEEEEcCCCCHHHHH
Confidence 456788887 59999999999999984 89999999887765544211 0 013333333 355677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ .... .+=.++|+..+
T Consensus 67 ~~~~~~-~~~~--g~id~lv~~ag 87 (257)
T PRK07024 67 AAAADF-IAAH--GLPDVVIANAG 87 (257)
T ss_pred HHHHHH-HHhC--CCCCEEEECCC
Confidence 777665 4333 22246776543
No 354
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.21 E-value=0.24 Score=44.29 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=53.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |.+|..+++.|++.|+ +|++++|++++.+.+..+ ..+ ..+++.++.+ .+..+.++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~----~v~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~ 72 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA----KVVIYDSNEEAAEALAAE-------LRA--AGGEARVLVFDVSDEAAVRAL 72 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCChhHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHHHH
Confidence 67899986 9999999999999984 899999998765543321 000 1223444333 34566677
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+=..||++++.
T Consensus 73 ~~~~-~~~~--~~id~vi~~ag~ 92 (246)
T PRK05653 73 IEAA-VEAF--GALDILVNNAGI 92 (246)
T ss_pred HHHH-HHHh--CCCCEEEECCCc
Confidence 7666 4444 333467776544
No 355
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.17 E-value=0.098 Score=52.60 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=46.6
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
++|.|||+|..|.+ +|+.|.+.|+ +|+++|.++. ..+.|.+ .|+ . .....+.+..+|+||++-
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~D~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGY----KVSGSDLKESAVTQRLLE-LGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCC----eEEEECCCCChHHHHHHH-CCCEEeCCCCHHHCCCCCEEEECC
Confidence 58999999999999 8999999994 9999997543 3334544 476 3 233345567899998774
No 356
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.13 E-value=0.24 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTG 87 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G 87 (341)
|.+||||.|+|+||+.+.+.+.+.+
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~ 25 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP 25 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC
Confidence 4579999999999999999988654
No 357
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.10 E-value=0.15 Score=46.58 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=44.1
Q ss_pred eEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHHHHHh
Q psy316 93 QIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 93 ~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~vl~~i 144 (341)
-+.+||+++++++.+.+++|+ .+.+.++++ .+.|+|++|+|+....++..+.
T Consensus 4 LvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~a 57 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKI 57 (229)
T ss_pred EEEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHH
Confidence 356899999999998887888 778888876 5799999999999888877665
No 358
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.04 E-value=0.27 Score=47.16 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----ChHHHhh---cCCEEEEeeCh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----DNHRIIK---EAEYVFLAMKP- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s~~e~~~---~aDvIilaV~~- 134 (341)
.++.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|+ ... +..+... ..|+||-++-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA---AEIVCADVSPRSLSLARE-MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---cEEEEEeCCHHHHHHHHH-cCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 579999999999988887777774 468899999999887665 776 221 1222222 26899988864
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
..+...++-+
T Consensus 247 ~~~~~~~~~l 256 (343)
T PRK09880 247 SSINTCLEVT 256 (343)
T ss_pred HHHHHHHHHh
Confidence 4555555444
No 359
>PLN02253 xanthoxin dehydrogenase
Probab=94.02 E-value=0.48 Score=43.73 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=49.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|+++..+.+.++++ ...++.++.+ .+..+.++
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~----~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~d~~~~~~~ 84 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGA----KVCIVDLQDDLGQNVCDSLG----------GEPNVCFFHCDVTVEDDVSRA 84 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHhc----------CCCceEEEEeecCCHHHHHHH
Confidence 45666655 8999999999999994 89999998766554433210 0123333332 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..+ ...+ .+=.+||++++
T Consensus 85 ~~~~-~~~~--g~id~li~~Ag 103 (280)
T PLN02253 85 VDFT-VDKF--GTLDIMVNNAG 103 (280)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6665 4433 22246776643
No 360
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.93 E-value=0.33 Score=44.05 Aligned_cols=79 Identities=10% Similarity=0.191 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+|.|+|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+..+ .++.++.. .+..+.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dl~~~~~i~~~ 64 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIATGRRQERLQELKDELG------------DNLYIAQLDVRNRAAIEEM 64 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhc------------cceEEEEecCCCHHHHHHH
Confidence 57888986 9999999999999984 89999999877665433211 12333322 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 65 ~~~~-~~~~--~~id~vi~~ag 83 (248)
T PRK10538 65 LASL-PAEW--RNIDVLVNNAG 83 (248)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4433 33346666543
No 361
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.43 Score=42.65 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~ 139 (341)
.++|.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+.+++. ...++.++. ..+..+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~~r~~~~~~~~~~~l~----------~~~~~~~~~~D~~~~~~~~~ 71 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAITARDQKELEEAAAELN----------NKGNVLGLAADVRDEADVQR 71 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEeeCCHHHHHHHHHHHh----------ccCcEEEEEccCCCHHHHHH
Confidence 367888876 9999999999999884 89999999877665433210 002222222 23556666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||++.+
T Consensus 72 ~~~~~-~~~~--~~~d~vi~~ag 91 (237)
T PRK07326 72 AVDAI-VAAF--GGLDVLIANAG 91 (237)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4433 22346665543
No 362
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.88 E-value=0.32 Score=45.51 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++..|..+|. .+++++|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCC
Confidence 35689999999999999999999995 578887765
No 363
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.84 E-value=0.77 Score=42.53 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCC---C----CCeEEEEcCCh----hh--hh----h---cCcCCCccccChHHHhh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLC---I----PAQIIASAPSE----RF--KL----H---WPEPMDFALNDNHRIIK- 123 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~---~----~~~V~v~~r~~----e~--~~----~---l~~~~g~~~~s~~e~~~- 123 (341)
.||.|.|+|.-|..+++.|...+.- . ..+|+++|+.- .+ +. . +.+. .-...++.|+++
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-~~~~~~L~eav~~ 104 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP-ERESGDLEDAVEA 104 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc-ccccCCHHHHHHh
Confidence 6899999999999999999886530 0 12788887641 11 11 1 1111 113457888888
Q ss_pred -cCCEEE-Eee-ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 124 -EAEYVF-LAM-KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 124 -~aDvIi-laV-~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++|++| ++. +.-.-+++++.+ ..+ .+..+|..+++..+
T Consensus 105 ~kptvlIG~S~~~g~ft~evv~~M-a~~---~~~PIIFaLSNPt~ 145 (254)
T cd00762 105 AKPDFLIGVSRVGGAFTPEVIRAX-AEI---NERPVIFALSNPTS 145 (254)
T ss_pred hCCCEEEEeCCCCCCCCHHHHHHH-hhc---CCCCEEEECCCcCC
Confidence 899888 444 333456788877 654 36678888888776
No 364
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.81 E-value=0.28 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.+||+|.+|+.+++.|...|+ .+++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv---g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF---RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEECCC
Confidence 68999999999999999999996 577777654
No 365
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.79 E-value=0.17 Score=48.52 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=43.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----C---hHHHhhcCCEEEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----D---NHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s---~~e~~~~aDvIil 130 (341)
|||.|.|+ |-+|+.+++.|++.+ .++|++.+|+.++...+....++ ... + ..++++.+|+||=
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~---~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT---DWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC---CCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 68999997 999999999999863 15899999876655444321122 111 2 1245678999993
No 366
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.78 E-value=0.39 Score=43.67 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.++|.|.|+ |.+|.++++.|.+.|. +|++.+|+.++.+.+.++. ........+.++.+ .+..+.
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~----~vi~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~i~ 69 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGY----RVAVADINSEKAANVAQEI-------NAEYGEGMAYGFGADATSEQSVL 69 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HHhcCCceeEEEEccCCCHHHHH
Confidence 4567888876 8999999999999984 8999999876655443210 00000122333332 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++.++ ...+ .+=.++|++++
T Consensus 70 ~~~~~~-~~~~--~~id~vv~~ag 90 (259)
T PRK12384 70 ALSRGV-DEIF--GRVDLLVYNAG 90 (259)
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 677666 4433 23346776643
No 367
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=93.71 E-value=0.26 Score=42.50 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.+||-+ .+|..++.-|.+.|. .|+++...- .+.++.+++||+||.++.-..+ +.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~---i~ 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGA----TVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL---IK 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT----B-
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCC----eEEeccCCC--------------CcccceeeeccEEeeeeccccc---cc
Confidence 4789999997 599999999999884 888887542 1456778899999999953322 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 95 ---~~~i--k~gavVIDv 107 (160)
T PF02882_consen 95 ---ADWI--KPGAVVIDV 107 (160)
T ss_dssp ---GGGS---TTEEEEE-
T ss_pred ---cccc--cCCcEEEec
Confidence 2346 788899987
No 368
>PRK08017 oxidoreductase; Provisional
Probab=93.66 E-value=0.11 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
|.++|.|.|+ |.+|.++++.|.+.|. +|++.+|++++.+.+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~----~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGY----RVLAACRKPDDVARMN 43 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHhHHHH
Confidence 4567999998 9999999999999984 8999999988766543
No 369
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.64 E-value=0.13 Score=51.18 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=44.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hh----hcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KL----HWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~----~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
||.|||+|..|.++|+.|.+.|+ +|+++|+++.. .. .+....|+ . .....+.+.++|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999995 99999975431 11 12212365 2 222345567899988764
No 370
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=93.64 E-value=0.43 Score=44.81 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=68.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhc----CCCC----CCeEEEEcCCh----hh--hhh----cCcCCCc-cccChHHHhh--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT----GLCI----PAQIIASAPSE----RF--KLH----WPEPMDF-ALNDNHRIIK-- 123 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~----G~~~----~~~V~v~~r~~----e~--~~~----l~~~~g~-~~~s~~e~~~-- 123 (341)
.||.|.|+|.-|..+++.|... |. . ..+|+++|+.- .+ +.. +..+..- ...++.|+++
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~-~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGL-SEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCC-ChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhc
Confidence 6899999999999999999887 74 2 14788888751 11 111 1111110 2247889999
Q ss_pred cCCEEEEee-ChH-HHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhc
Q psy316 124 EAEYVFLAM-KPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKL 173 (341)
Q Consensus 124 ~aDvIilaV-~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l 173 (341)
++|++|=+. .+. .-+++++.+ ..+. +..+|..+++..+ .++..+|.
T Consensus 105 ~ptvlIG~S~~~g~ft~evv~~M-a~~~---~~PIIFaLSNPt~~~E~~pe~a~~~t 157 (279)
T cd05312 105 KPTVLIGLSGVGGAFTEEVVRAM-AKSN---ERPIIFALSNPTSKAECTAEDAYKWT 157 (279)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHH-HhcC---CCCEEEECCCcCCccccCHHHHHHhh
Confidence 889988443 343 456788887 6553 6778999988875 34555554
No 371
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.38 Score=46.28 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCC--C----CCCeE-EEEcCChhhhhhcCcCCC-c-cccCh-----HHHhh--cCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGL--C----IPAQI-IASAPSERFKLHWPEPMD-F-ALNDN-----HRIIK--EAE 126 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~--~----~~~~V-~v~~r~~e~~~~l~~~~g-~-~~~s~-----~e~~~--~aD 126 (341)
|.++|+++|+|++|+.+++-|.+++- . ...+| .+.+|+......+.- .+ . ...+. .+.+. +.|
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDL-LNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccc-cchhhheecccccccHhhhccccCC
Confidence 45799999999999999999987631 0 01122 356665544431111 12 1 22233 34443 567
Q ss_pred EEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEec
Q psy316 127 YVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 127 vIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+|+-+++. ..-++ +..+ ...+ ..++-||+-.
T Consensus 81 vvve~~~~d~~~~~~-~~~~-~~al--~~GkhVVTaN 113 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLY-LKAL--ENGKHVVTAN 113 (333)
T ss_pred EEEecCcccCCchhh-HHHH-HHHH--HcCCeEECCC
Confidence 99988865 23333 3334 4445 5666666543
No 372
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.60 E-value=0.48 Score=44.06 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=50.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccC---hHHHh------hcCCEEEEeeC-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALND---NHRII------KEAEYVFLAMK- 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s---~~e~~------~~aDvIilaV~- 133 (341)
.++.|+|+|.+|...++.+...|. ..|++.++++++.+.+++ +|+ .+-+ ..+.+ ...|++|-++-
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~---~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGA---ARVVAADPSPDRRELALS-FGATALAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHH-cCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 579999999999998887777774 348888988888776555 676 2211 11111 13688888774
Q ss_pred hHHHHHHHHHh
Q psy316 134 PQYLDSAIQGL 144 (341)
Q Consensus 134 ~~~v~~vl~~i 144 (341)
+..+...++-+
T Consensus 198 ~~~~~~~~~~l 208 (280)
T TIGR03366 198 TAAVRACLESL 208 (280)
T ss_pred hHHHHHHHHHh
Confidence 44455555444
No 373
>KOG1370|consensus
Probab=93.57 E-value=1.6 Score=41.50 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred eEE-EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH
Q psy316 66 KVG-FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 66 kIg-iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
|++ |.|.|..|..-++.|...| ..|++...+|-.+-+.+-+ |..+...+|+++..|+++.++--.+
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g----~~VivTEiDPI~ALQAaMe-G~~V~tm~ea~~e~difVTtTGc~d 281 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFG----ARVIVTEIDPICALQAAME-GYEVTTLEEAIREVDIFVTTTGCKD 281 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcC----cEEEEeccCchHHHHHHhh-ccEeeeHHHhhhcCCEEEEccCCcc
Confidence 455 5599999999999999888 4899999888655444332 6645578899999999999986543
No 374
>PRK09186 flagellin modification protein A; Provisional
Probab=93.53 E-value=0.49 Score=42.84 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe--e-ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA--M-KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila--V-~~~~v~~ 139 (341)
.+++.|.|+ |.+|.++++.|.+.|+ +|++.+|++++++.+.+++. .......+.++. + .+..+.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~----~v~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dl~d~~~~~~ 72 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG----IVIAADIDKEALNELLESLG-------KEFKSKKLSLVELDITDQESLEE 72 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEEecChHHHHHHHHHHH-------hhcCCCceeEEEecCCCHHHHHH
Confidence 356778876 8999999999999984 89999999877765543210 000111222222 2 3567777
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+++++ ...+ .+=.+||+++
T Consensus 73 ~~~~~-~~~~--~~id~vi~~A 91 (256)
T PRK09186 73 FLSKS-AEKY--GKIDGAVNCA 91 (256)
T ss_pred HHHHH-HHHc--CCccEEEECC
Confidence 77776 5444 3334677665
No 375
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=93.49 E-value=1.2 Score=37.04 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCeE-EcCCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 215 EHLNMAIKIMEQGGIVE-IIPES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~-~v~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
+....++.|++.+|..+ .++++ .++.+.++++ .|+..+...-.+...+.|++.+.+++++...+.++.+.+.+
T Consensus 11 ~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~as---Nf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~ 87 (132)
T PF10728_consen 11 EALEVLQELAKELGGRPFEIDSEQRALYHAAAVFAS---NFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQ 87 (132)
T ss_dssp HHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh
Confidence 78899999999999864 56554 4555555554 34433333334445688999999999999999999999976
Q ss_pred hhhhccccCCCChHHHHHhcCCCc-hHHHHHHHHHHh
Q psy316 291 DLLRMDHAAQAHPAVIKDQICSPG-GSTIAGIHALEK 326 (341)
Q Consensus 291 ~~~~~~~~~~~~p~~l~~~v~tpg-G~t~~~l~~l~~ 326 (341)
.+ .++.+.--+.-.. ++..+=+..|++
T Consensus 88 --------~g-~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 88 --------LG-PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp --------S--HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred --------cC-chhccCCCcccCCHHHHHHHHHHHhc
Confidence 22 2244544444333 333333555554
No 376
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.55 Score=42.63 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+.+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~----~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGD----RVLALDIDAAALAAFAD 44 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH
Confidence 4467888887 8999999999999984 89999999877665443
No 377
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.16 Score=50.42 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHH-HHHH-HhcCCCCCCeEEEEcCChhhhhh-------cCcCCCc-----cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAV-ATSL-IRTGLCIPAQIIASAPSERFKLH-------WPEPMDF-----ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~ai-a~~L-~~~G~~~~~~V~v~~r~~e~~~~-------l~~~~g~-----~~~s~~e~~~~aDvIi 129 (341)
++||+|||+|....+. ..++ ...--++..+|.++|.++++.+. +.++.|. .++|.++++.+||+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 5789999999887542 2222 33333556689999999888762 2233343 5678999999999999
Q ss_pred EeeChHH
Q psy316 130 LAMKPQY 136 (341)
Q Consensus 130 laV~~~~ 136 (341)
.++.+..
T Consensus 83 ~~~rvG~ 89 (442)
T COG1486 83 TQIRVGG 89 (442)
T ss_pred EEEeeCC
Confidence 9986543
No 378
>PLN03075 nicotianamine synthase; Provisional
Probab=93.46 E-value=0.22 Score=47.19 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc----CCC----c--cccChHHH---hhcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE----PMD----F--ALNDNHRI---IKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~----~~g----~--~~~s~~e~---~~~aDvIil 130 (341)
..+|.+||+|..|..-.- +.+++.+...++.+|++++..+..++ ..+ + ...+..+. ..+.|+||+
T Consensus 124 p~~VldIGcGpgpltaii--laa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIV--LAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCEEEEECCCCcHHHHHH--HHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 468999999988653221 22222344589999999876543222 112 2 22333332 357999999
Q ss_pred eeC----hHHHHHHHHHhhhcccccCCCcEEEE
Q psy316 131 AMK----PQYLDSAIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 131 aV~----~~~v~~vl~~i~~~~l~~~~~~iIVs 159 (341)
.+- ...-.++++.+ ...+ ++|.+++-
T Consensus 202 ~ALi~~dk~~k~~vL~~l-~~~L--kPGG~Lvl 231 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHL-GKHM--APGALLML 231 (296)
T ss_pred ecccccccccHHHHHHHH-HHhc--CCCcEEEE
Confidence 961 23446778888 7778 77776653
No 379
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.45 E-value=0.27 Score=46.39 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee-ChHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM-KPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV-~~~~v~~vl 141 (341)
.+++.|||-|+ .|..++.-|.+.|. .|+++...- .++.+..++||+||.|+ +|..+.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i~--- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVCHVFT--------------DDLKKYTLDADILVVATGVKHLIK--- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCC----EEEEEeccC--------------CCHHHHHhhCCEEEEccCCccccC---
Confidence 47899999998 99999999988874 899887421 24567788999999988 455321
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 223 ----~~~v--k~gavVIDv 235 (287)
T PRK14176 223 ----ADMV--KEGAVIFDV 235 (287)
T ss_pred ----HHHc--CCCcEEEEe
Confidence 2245 788899986
No 380
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.19 Score=50.07 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh----hhhcCcCCCc-cc--cChHHHhhc-CCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF----KLHWPEPMDF-AL--NDNHRIIKE-AEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~----~~~l~~~~g~-~~--~s~~e~~~~-aDvIilaV 132 (341)
.+++.|+|.|.+|.++++.|.+.|. +|+++|++... .+.+.+ .|+ .. .+..+.... .|+||.+-
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~d~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGA----NVTVNDGKPFSENPEAQELLE-EGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEEcCCCccchhHHHHHHh-cCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 3679999999999999999999994 99999976422 233444 465 22 234444444 89888765
No 381
>KOG1495|consensus
Probab=93.38 E-value=0.53 Score=43.84 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCcCCCc-c-------ccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPEPMDF-A-------LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~~~g~-~-------~~s~~e~~~~aDvIilaV~ 133 (341)
.-||.|+|.|+.|.+.+..++..|+ ..++.+.|.++++++- +--+.|. . ......+-++++++|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~L--adel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGL--ADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhh--hhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence 4689999999999999999998886 4588999998876552 1111121 1 1111234568999998862
Q ss_pred h--H---H----H---HHHHHHhhhcccc-cCCCcEEEEecCCCCHHHHHH
Q psy316 134 P--Q---Y----L---DSAIQGLVNDKVT-LNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 134 ~--~---~----v---~~vl~~i~~~~l~-~~~~~iIVs~~agi~~~~l~~ 171 (341)
. + . + -++++.+ .|.+- -.|+.+++-.++.+++-+...
T Consensus 98 arq~~gesRL~lvQrNV~ifK~i-ip~lv~ySpd~~llvvSNPVDilTYv~ 147 (332)
T KOG1495|consen 98 ARQSEGESRLDLVQRNVDIFKAI-IPALVKYSPDCILLVVSNPVDILTYVT 147 (332)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH-HHHHhhcCCCeEEEEecCchHHHHHHH
Confidence 1 1 1 1 1233333 33210 057888777778887654433
No 382
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.33 E-value=0.22 Score=46.96 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||-| ..|..++..|.+.|. .|+++.... .++.+.+++||+||.|+.-..+ +.
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~---i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGA----SVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL---IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----EEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc---CC
Confidence 4799999999 999999999998884 888874321 1345678899999999953322 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 216 ---~~~v--k~GavVIDv 228 (285)
T PRK14191 216 ---ASMV--KKGAVVVDI 228 (285)
T ss_pred ---HHHc--CCCcEEEEe
Confidence 2245 788898886
No 383
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=93.32 E-value=1 Score=42.23 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=62.9
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEE--EcCChh--hhhhcCcCCCc-c------ccChHHHhhc-CC-EEEEe
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIA--SAPSER--FKLHWPEPMDF-A------LNDNHRIIKE-AE-YVFLA 131 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v--~~r~~e--~~~~l~~~~g~-~------~~s~~e~~~~-aD-vIila 131 (341)
||.|.|+ |+||+..++.+.+.++ ++.. +++... ....+.. .++ . ..++.+++.. +| |+|=-
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g-~~v~v~~~~~~~~~l~~~~~~~~d~VvIDF 76 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAG-KEILLHGPSEREARIGEVFAKYPELICIDY 76 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcc-cceeeeccccccccHHHHHhhcCCEEEEEC
Confidence 6889998 9999999999888765 5543 343211 2222222 133 3 5566777766 99 88877
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+.|..+.+.++.. + ..+..+|.-+.|.+.++++++..
T Consensus 77 T~P~~~~~n~~~~----~--~~gv~~ViGTTG~~~~~~~~l~~ 113 (275)
T TIGR02130 77 THPSAVNDNAAFY----G--KHGIPFVMGTTGGDREALAKLVA 113 (275)
T ss_pred CChHHHHHHHHHH----H--HCCCCEEEcCCCCCHHHHHHHHH
Confidence 7787777766544 2 33444555567888888766543
No 384
>PRK09242 tropinone reductase; Provisional
Probab=93.31 E-value=0.55 Score=42.68 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=53.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|.+.|. +|++.+|+++.++.+.+++ .+.....++.++.+ .+..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA----DVLIVARDADALAQARDEL-------AEEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCCCHHHHHHH
Confidence 56777775 8999999999999984 8999999987766554321 11111234544443 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.+||++.+
T Consensus 79 ~~~~-~~~~--g~id~li~~ag 97 (257)
T PRK09242 79 LDWV-EDHW--DGLHILVNNAG 97 (257)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6666 4444 33346776654
No 385
>PLN02214 cinnamoyl-CoA reductase
Probab=93.30 E-value=0.25 Score=47.48 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=48.7
Q ss_pred ccCCCCCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-----hhcCcCC-Cc--------cccChHHH
Q psy316 57 VEHHVPMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK-----LHWPEPM-DF--------ALNDNHRI 121 (341)
Q Consensus 57 ~~~~~~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-----~~l~~~~-g~--------~~~s~~e~ 121 (341)
+++.+++.++|.|.|+ |-+|+.+++.|++.|+ +|++..|+.++. ..+.... .+ ...+..++
T Consensus 3 ~~~~~~~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 3 VDVASPAGKTVCVTGAGGYIASWIVKILLERGY----TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred cccccCCCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 4456667788999987 9999999999999994 899888875532 1121100 11 11123455
Q ss_pred hhcCCEEEEee
Q psy316 122 IKEAEYVFLAM 132 (341)
Q Consensus 122 ~~~aDvIilaV 132 (341)
++.+|+||-+.
T Consensus 79 ~~~~d~Vih~A 89 (342)
T PLN02214 79 IDGCDGVFHTA 89 (342)
T ss_pred HhcCCEEEEec
Confidence 67899998775
No 386
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.26 E-value=0.56 Score=42.79 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ . ...++.++.+ .+..++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~---~~~~~~~~~~Dv~d~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVISSRNEENLEKALKEL-------K---EYGEVYAVKADLSDKDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------H---hcCCceEEEcCCCCHHHHHHH
Confidence 57888876 8899999999999994 8999999987765543321 0 0012222222 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 67 ~~~~-~~~~--g~id~li~naG 85 (259)
T PRK08340 67 VKEA-WELL--GGIDALVWNAG 85 (259)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 22246776643
No 387
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.63 Score=43.04 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.++|.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~----~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH----RVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC----EEEEEeCCHHHHHHHHh
Confidence 356888876 9999999999999984 89999999887766544
No 388
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=93.22 E-value=0.17 Score=40.24 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc--CCCc-cccChHHHhhcCCEEEEeeChHHHHHH-HHHhhhccccc
Q psy316 76 AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE--PMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA-IQGLVNDKVTL 151 (341)
Q Consensus 76 G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v-l~~i~~~~l~~ 151 (341)
+-.|++.|.+.|. +|.++|+.-........ ..++ ...+..+.++.+|+||++++...+.++ .+++ ...+
T Consensus 19 ~~~l~~~L~~~g~----~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~-~~~~-- 91 (106)
T PF03720_consen 19 ALELIEELKERGA----EVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEI-AKLM-- 91 (106)
T ss_dssp HHHHHHHHHHTT-----EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHH-HHHS--
T ss_pred HHHHHHHHHHCCC----EEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHH-HHhc--
Confidence 4568899999995 99999986544332221 1245 567888999999999999998776652 3444 4445
Q ss_pred CCCcEEEEecC
Q psy316 152 NSSRCIISMLV 162 (341)
Q Consensus 152 ~~~~iIVs~~a 162 (341)
.++.+|+++-+
T Consensus 92 ~~~~~iiD~~~ 102 (106)
T PF03720_consen 92 RKPPVIIDGRN 102 (106)
T ss_dssp CSSEEEEESSS
T ss_pred CCCCEEEECcc
Confidence 57788888754
No 389
>KOG1502|consensus
Probab=93.19 E-value=0.27 Score=47.10 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh------hhhcCcC---CC-----c-cccChHHHhhcCC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF------KLHWPEP---MD-----F-ALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~------~~~l~~~---~g-----~-~~~s~~e~~~~aD 126 (341)
+.++|.|-|+ |-+|+.|++.|++.| |.|...-|+++. +.++... +- + ...+..++++.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG----Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG----YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC----CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCC
Confidence 5678999987 999999999999999 599999998876 3333311 11 1 2345677899999
Q ss_pred EEEEe
Q psy316 127 YVFLA 131 (341)
Q Consensus 127 vIila 131 (341)
.||=+
T Consensus 81 gVfH~ 85 (327)
T KOG1502|consen 81 GVFHT 85 (327)
T ss_pred EEEEe
Confidence 99933
No 390
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.58 Score=42.73 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFIGA-G-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~-G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
..+++.|.|+ | .+|.++++.|++.|. +|++.+|++++++...++. .+......+.++.+ .+..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~Dl~~~~~~ 84 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVISDIHERRLGETADEL-------AAELGLGRVEAVVCDVTSEAQV 84 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HHhcCCceEEEEEccCCCHHHH
Confidence 3577888897 6 699999999999994 8999999877665433210 00001112333332 34567
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ ...+ .+=.++|++.+
T Consensus 85 ~~~~~~~-~~~~--g~id~li~~ag 106 (262)
T PRK07831 85 DALIDAA-VERL--GRLDVLVNNAG 106 (262)
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777665 4333 22246676644
No 391
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.09 E-value=0.21 Score=50.80 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=46.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCC-Cc-c-cc-ChHHHhhcCCEEEEe--eCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPM-DF-A-LN-DNHRIIKEAEYVFLA--MKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~-g~-~-~~-s~~e~~~~aDvIila--V~~ 134 (341)
++|.|||.|..|.++|+.|.+.|+ +|+++|.+.. ..+.|.+.. |+ . .. ...+.+..+|+||.+ +|+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGA----RLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCC----EEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCC
Confidence 579999999999999999999994 9999997542 223343311 33 1 22 234556789999987 455
No 392
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.6 Score=42.40 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|+|+ |.+|..+++.|++.|+ +|++.+|+++..+.+.++. .+..+.++.+ .+..+.+
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~ 75 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA----RVHVCDVSEAALAATAARL-----------PGAKVTATVADVADPAQVER 75 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-----------hcCceEEEEccCCCHHHHHH
Confidence 478999976 9999999999999984 8999999877665543321 1112233322 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecCCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+++++ ...+ .+-..||+..+..
T Consensus 76 ~~~~~-~~~~--~~~d~vi~~ag~~ 97 (264)
T PRK12829 76 VFDTA-VERF--GGLDVLVNNAGIA 97 (264)
T ss_pred HHHHH-HHHh--CCCCEEEECCCCC
Confidence 66665 4444 3335677665543
No 393
>PRK08643 acetoin reductase; Validated
Probab=93.01 E-value=0.44 Score=43.27 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+..++ .+ ...++.++.+ .+..+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~ 67 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGF----KVAIVDYNEETAQAAADKL-------SK--DGGKAIAVKADVSDRDQVF 67 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCeEEEEECCCCCHHHHH
Confidence 4456777765 8999999999999984 8999999887766544321 00 0123334333 456677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.++ ...+ .+=.++|++++
T Consensus 68 ~~~~~~-~~~~--~~id~vi~~ag 88 (256)
T PRK08643 68 AAVRQV-VDTF--GDLNVVVNNAG 88 (256)
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 777776 4433 23346676643
No 394
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.00 E-value=0.19 Score=50.38 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=45.1
Q ss_pred eEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-cc-cChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-AL-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~~-~s~~e~~~~aDvIilaV 132 (341)
+|-|||.|..|.+ +|+.|.+.|+ +|+++|++.. ..+.|.+ .|+ .. ....+.+.++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~D~~~~~~~~~l~~-~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGSDIAENATTKRLEA-LGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEECCCcchHHHHHHH-CcCEEeCCCCHHHCCCCCEEEECC
Confidence 4889999999998 9999999994 9999997543 3334544 476 32 23345567899998763
No 395
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.99 E-value=0.62 Score=43.72 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=52.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~----~Vi~~~R~~~~l~~~~~~l-------~~--~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA----TVVAVARREDLLDAVADRI-------TR--AGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 56777776 9999999999999984 9999999988776554321 00 0123333332 34566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|++++
T Consensus 108 ~~~~-~~~~--g~id~li~~AG 126 (293)
T PRK05866 108 VADV-EKRI--GGVDILINNAG 126 (293)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33346776644
No 396
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.62 Score=42.53 Aligned_cols=84 Identities=7% Similarity=0.031 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+.+.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.++ ..+......+.++.+ .+..+.++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA----SVAICGRDEERLASAEAR-------LREKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHHHHHH
Confidence 45666666 7899999999999995 899999998776654332 111111123444433 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|.+++
T Consensus 78 ~~~~-~~~~--g~id~li~~Ag 96 (265)
T PRK07062 78 AAAV-EARF--GGVDMLVNNAG 96 (265)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7766 4433 22246776643
No 397
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.94 E-value=1.8 Score=41.40 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=90.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhh-hcCcC--C-------------C---c--cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKL-HWPEP--M-------------D---F--ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~-~l~~~--~-------------g---~--~~~s~~e 120 (341)
.++.++|+|..+--+|--|..+|. .++-+++|-. +++. .++.. + | + ...+.++
T Consensus 5 ~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~ 81 (431)
T COG4408 5 LPVLLLGTGPVAIQLAVDLSAHGD---ARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ 81 (431)
T ss_pred cceeEeecCcHHHHHHHHHHhccC---ceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH
Confidence 579999999999999999988884 6888888732 2222 22211 0 1 1 2345567
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCC--HHHHHHhccc------cCCCCCCCCeEEEE-c
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVD--LETLKKKLSV------LVPNPNDAPTIIRV-M 190 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~--~~~l~~~l~~------~~~~~~~~~~vvr~-m 190 (341)
+..+=+-+|+|||.++..+|+++| -. .|..-+..++||-.=|.. ++.+...++. +-.=..+++ +++. -
T Consensus 82 ~~~dwqtlilav~aDaY~dvlqqi-~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk-~id~~~ 159 (431)
T COG4408 82 AVGDWQTLILAVPADAYYDVLQQI-PWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTK-YIDAEQ 159 (431)
T ss_pred hhchhheEEEEeecHHHHHHHhcC-CHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccce-eecccC
Confidence 777889999999999999999886 32 230013335555432322 2222222220 000001334 4432 2
Q ss_pred CCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 191 PNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 191 pn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
||..-..+-...+..++...+. ...+.+..+|...|..++.
T Consensus 160 p~~alTkavKkriYlgs~~~ns--~~~e~l~~v~aq~~I~v~~ 200 (431)
T COG4408 160 PNRALTKAVKKRIYLGSQHGNS--GSAEMLTAVLAQHGIDVEP 200 (431)
T ss_pred cchHHHHHHhHheeeccCCCCC--hHHHHHHHHHHhcCCceEE
Confidence 4433221111122233333334 6778899999999987654
No 398
>PRK06482 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.64 Score=42.79 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=35.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|.|+ |.+|..+++.|++.|. +|++..|++++++.+.+
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~----~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGD----RVAATVRRPDALDDLKA 44 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH
Confidence 4567888875 9999999999999984 89999999877665544
No 399
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.88 E-value=0.51 Score=45.39 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC---ChhhhhhcCcCCCc-cccCh----HH--HhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP---SERFKLHWPEPMDF-ALNDN----HR--IIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r---~~e~~~~l~~~~g~-~~~s~----~e--~~~~aDvIilaV~ 133 (341)
..++.|+|+|.+|...++.+...|. +|++++| ++++.+.+++ +|+ ..... .+ .....|+||-++-
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~~~~~~~~~~~~~~~~-~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVLNRRDPPDPKADIVEE-LGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEEecCCCCHHHHHHHHH-cCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 3579999999999998887777774 7888887 5677765554 776 22111 11 1235799999996
Q ss_pred h-HHHHHHHHHh
Q psy316 134 P-QYLDSAIQGL 144 (341)
Q Consensus 134 ~-~~v~~vl~~i 144 (341)
. ..+.+.++-+
T Consensus 248 ~~~~~~~~~~~l 259 (355)
T cd08230 248 VPPLAFEALPAL 259 (355)
T ss_pred CHHHHHHHHHHc
Confidence 4 4455555444
No 400
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.87 E-value=0.19 Score=51.87 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.++|.|.|+ |.+|..+++.|++.|+ +|+++.|+.++++.+
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval~Rn~ekl~~l 120 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF----RVRAGVRSAQRAESL 120 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHH
Confidence 456778876 9999999999999994 999999998876543
No 401
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.71 Score=42.04 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=34.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++.|+|+ |.+|.++++.|++.|. +|++.+|+++..+.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHH
Confidence 46888875 9999999999999984 89999999887766544
No 402
>KOG1200|consensus
Probab=92.74 E-value=0.34 Score=43.12 Aligned_cols=90 Identities=9% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|.+...|-|.| -+|.++++.|.++|. +|.+.+++.+.++..+..++.. ..-..-.||+ -++.+++..+
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Ga----rv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DV----S~a~~v~~~l 81 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGA----RVAVADLDSAAAEATAGDLGGY---GDHSAFSCDV----SKAHDVQNTL 81 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCc----EEEEeecchhhHHHHHhhcCCC---Cccceeeecc----CcHHHHHHHH
Confidence 33344455554 699999999999994 9999999877666554433321 0011123443 3577888888
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++. ...+ .+-.++|++ +|++-+
T Consensus 82 ~e~-~k~~--g~psvlVnc-AGItrD 103 (256)
T KOG1200|consen 82 EEM-EKSL--GTPSVLVNC-AGITRD 103 (256)
T ss_pred HHH-HHhc--CCCcEEEEc-Cccccc
Confidence 887 6666 555688877 677643
No 403
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.65 E-value=0.22 Score=37.24 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.1
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
||.|||.|..|.-+|..|.+.|. +|+++.|++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK----EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS----EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc----EEEEEeccchh
Confidence 68999999999999999999884 99999987643
No 404
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.65 E-value=0.19 Score=46.60 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~----~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW----RVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH
Confidence 5567888887 9999999999999984 99999999887766544
No 405
>PRK08163 salicylate hydroxylase; Provisional
Probab=92.65 E-value=0.16 Score=49.52 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|.++|.|||+|..|.++|..|.+.|+ +|++++|+++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEEeeCcc
Confidence 45789999999999999999999995 8999998754
No 406
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.63 E-value=0.34 Score=47.66 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
...+||.|+|+ |.+|+.+++.|++.|+ +|++..|++.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEEechhh
Confidence 34578999986 9999999999999984 99999998754
No 407
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.58 E-value=0.28 Score=46.12 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=45.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----ccc---ChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALN---DNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~---s~~e~~~~aDvIilaV 132 (341)
|+|.|.|+ |-+|..+++.|++.| ++|++.+|+++....+.. .++ -.. +..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG----EEVRVLVRPTSDRRNLEG-LDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC----CEEEEEEecCcccccccc-CCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999985 999999999999998 499999998766544432 232 112 2345566889998765
No 408
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.57 E-value=0.64 Score=41.80 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|++.|+ +|++.+|++++.+.+..++. . ..++.++.. .+..+..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~----~V~~~~r~~~~~~~~~~~~~-------~---~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGA----RVVVTDRNEEAAERVAAEIL-------A---GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHh-------c---CCeEEEEECCCCCHHHHHHH
Confidence 57889986 9999999999999984 89999999876654433110 0 223444433 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ .+.+ .+=..||++++
T Consensus 72 ~~~~-~~~~--~~~d~vi~~ag 90 (251)
T PRK07231 72 VAAA-LERF--GSVDILVNNAG 90 (251)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6655 3333 22236666543
No 409
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.57 E-value=0.57 Score=42.10 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|++.+|++++.+.+.++ ..+ ...++.++.+ .+..+..+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW----DLALVARSQDALEALAAE-------LRS--TGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHh--CCCcEEEEEccCCCHHHHHHH
Confidence 56788875 9999999999999984 899999998766554331 001 1123444443 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|++.+
T Consensus 74 ~~~~-~~~~--~~id~lv~~ag 92 (241)
T PRK07454 74 IAEL-LEQF--GCPDVLINNAG 92 (241)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4333 22246666543
No 410
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.55 E-value=0.95 Score=40.59 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=33.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH 106 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~ 106 (341)
|.++|.|.| +|.+|.++++.|++.|. +|++.+|++++...
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~~r~~~~~~~ 45 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA----EVIVVDICGDDAAA 45 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHH
Confidence 456899998 59999999999999984 89999998765543
No 411
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=92.52 E-value=1.6 Score=41.85 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
..||.+-|. |.-|+..++.+++.|. .-|...++...--+ +.. +|+ .+.+..|+.+. +|+.+++||+..+.+
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~ygt---~iv~GV~Pgkgg~~-v~~-~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~d 103 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEYGT---KMVGGVNPKKAGTT-HLK-HGLPVFATVKEAKKATGADASVIYVPPPHAAS 103 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHhCC---cEEEEECCCCCCce-Eec-CCccccCCHHHHhcccCCCEEEEecCHHHHHH
Confidence 468999998 9999999999999994 22334544320011 111 377 78888888876 999999999999888
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++.+.....+ +.+|-++.|++..
T Consensus 104 ai~Ea~~aGI-----~~~ViiteGfpe~ 126 (317)
T PTZ00187 104 AIIEAIEAEI-----PLVVCITEGIPQH 126 (317)
T ss_pred HHHHHHHcCC-----CEEEEECCCCchh
Confidence 8877612222 3555567888754
No 412
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.52 E-value=0.9 Score=40.65 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|.++|.|+|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.+.+ .. ....+.++.+ .+..+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~----~v~~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~ 70 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA----KVVIAYDINEEAAQELLEEI-------KE--EGGDAIAVKADVSSEEDV 70 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEcCCCHHHHHHHHHHH-------Hh--cCCeEEEEECCCCCHHHH
Confidence 4567889976 9999999999999884 88887 99877655443310 00 1223444443 24556
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..++.++ ...+ .+=..||+..+
T Consensus 71 ~~~~~~~-~~~~--~~id~vi~~ag 92 (247)
T PRK05565 71 ENLVEQI-VEKF--GKIDILVNNAG 92 (247)
T ss_pred HHHHHHH-HHHh--CCCCEEEECCC
Confidence 6666655 3323 22246666544
No 413
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.93 Score=41.68 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCeE-EEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKV-GFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kI-giIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|..|+ .|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~-~~~~~~~~~~~Dv~~~~~i 73 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA----DVILLSRNEENLKKAREKI-------KS-ESNVDVSYIVADLTKREDL 73 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-hcCCceEEEEecCCCHHHH
Confidence 44444 55565 7899999999999994 8999999988766554321 00 01234444433 35567
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ .. + .+=.++|+.++
T Consensus 74 ~~~~~~~-~~-~--g~iD~lv~nag 94 (263)
T PRK08339 74 ERTVKEL-KN-I--GEPDIFFFSTG 94 (263)
T ss_pred HHHHHHH-Hh-h--CCCcEEEECCC
Confidence 7777766 43 2 22235666543
No 414
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.46 E-value=0.26 Score=46.28 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh---hcCc-CC----Cc--cccCh---HHHhhcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL---HWPE-PM----DF--ALNDN---HRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~---~l~~-~~----g~--~~~s~---~e~~~~aDvIil 130 (341)
..||+|||.|.+-....--....+ ....|..+|++++..+ ++.+ .. +. .+.+. ...+.+.|+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~--~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG--PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT--T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 458999999998755433222222 2246888999987544 2222 11 22 22232 223568999999
Q ss_pred eeChH----HHHHHHHHhhhcccccCCCcEEE
Q psy316 131 AMKPQ----YLDSAIQGLVNDKVTLNSSRCII 158 (341)
Q Consensus 131 aV~~~----~v~~vl~~i~~~~l~~~~~~iIV 158 (341)
|--.. .-.+++..+ ..++ ++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l-~~~m--~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHL-AKHM--APGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHH-HHHS---TTSEEE
T ss_pred hhhcccccchHHHHHHHH-HhhC--CCCcEEE
Confidence 97544 556888888 8888 7887655
No 415
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.39 E-value=0.18 Score=49.53 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.+|.|||+|-+|.++|..|.+.|+ +|++++|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEEeCCC
Confidence 489999999999999999999984 999999874
No 416
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.37 E-value=1.2 Score=40.49 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++ .+ ....+.++.+ .+..+..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~i-------~~--~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA----EVILNGRDPAKLAAAAESL-------KG--QGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCceEEEEEccCCCHHHHHH
Confidence 367888876 9999999999999994 8999999987655433210 00 0123333332 3556777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||+..+
T Consensus 77 ~~~~~-~~~~--~~~d~li~~ag 96 (255)
T PRK07523 77 AIDAF-EAEI--GPIDILVNNAG 96 (255)
T ss_pred HHHHH-HHhc--CCCCEEEECCC
Confidence 77666 4433 33346776654
No 417
>PLN02477 glutamate dehydrogenase
Probab=92.36 E-value=0.49 Score=46.96 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=59.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCC----------hhhhhhcCcCCC-------ccccChHHHh-hc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPS----------ERFKLHWPEPMD-------FALNDNHRII-KE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~----------~e~~~~l~~~~g-------~~~~s~~e~~-~~ 124 (341)
.++|+|.|.|++|+..++.|.+.|. +|+ ++|.+ .+.+.+.+++.+ ...-++.+++ .+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~ 281 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEP 281 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecc
Confidence 4799999999999999999999985 665 77876 544433222211 1111334443 38
Q ss_pred CCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
|||++-|--...+.+ +. .+.+ +-++|+--+|+-....-.+.|.
T Consensus 282 ~DvliP~Al~~~I~~---~n-a~~i---~ak~I~egAN~p~t~ea~~~L~ 324 (410)
T PLN02477 282 CDVLIPAALGGVINK---EN-AADV---KAKFIVEAANHPTDPEADEILR 324 (410)
T ss_pred ccEEeeccccccCCH---hH-HHHc---CCcEEEeCCCCCCCHHHHHHHH
Confidence 999998854333221 11 2223 3457787766544333444554
No 418
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=92.34 E-value=11 Score=38.90 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhCCCCCCCCcccccccccc-------ccCCCCCcCCCCCCCCccc----------CCC-CCCCeEEEE
Q psy316 9 AYDETMRIIIKAAADPVKKSDTVTEDSESEQ-------HTGARPVRKSDMGMEDSVE----------HHV-PMWTKVGFI 70 (341)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------~~~-~m~~kIgiI 70 (341)
.|++-|..+|++....-.+-=-+-||=.... -+..-|+-+-|.-+|-.+. .+. .-..||.|.
T Consensus 224 eY~~f~defv~av~~~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~ 303 (559)
T PTZ00317 224 EYYELLDEFMEAVSSRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFF 303 (559)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 4677777777755544333344566654433 1344677777775541100 000 123689999
Q ss_pred cccHHHHHHHHHHHh----cCCCCC----CeEEEEcCCh----hh---hh----hcCcCCC-c---cccChHHHhhcC--
Q psy316 71 GAGNMAQAVATSLIR----TGLCIP----AQIIASAPSE----RF---KL----HWPEPMD-F---ALNDNHRIIKEA-- 125 (341)
Q Consensus 71 G~G~mG~aia~~L~~----~G~~~~----~~V~v~~r~~----e~---~~----~l~~~~g-~---~~~s~~e~~~~a-- 125 (341)
|+|.-|..+++.|.+ .|+ .. .+++++|+.- .+ +. .++.... . ...++.|+++..
T Consensus 304 GAGsAgiGia~ll~~~m~~~Gl-s~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KP 382 (559)
T PTZ00317 304 GAGSAAIGVANNIADLAAEYGV-TREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKP 382 (559)
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-ChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCC
Confidence 999999999998874 674 21 4788887631 11 11 1222110 0 145788888876
Q ss_pred CEEEE-eeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 126 EYVFL-AMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 126 DvIil-aV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
|++|= +..+ -.-+++++.+ ..+. +..||..+++..+ .+...+|..
T Consensus 383 tvLIG~S~~~g~Ft~evv~~M-a~~~---~rPIIFaLSNPt~~aE~tpeda~~~T~ 434 (559)
T PTZ00317 383 TALLGLSGVGGVFTEEVVKTM-ASNV---ERPIIFPLSNPTSKAECTAEDAYKWTN 434 (559)
T ss_pred CEEEEecCCCCCCCHHHHHHH-HhcC---CCCEEEECCCCCCCCCcCHHHHHhhcc
Confidence 88883 3334 3567788888 6653 6778999988874 455555543
No 419
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.32 E-value=0.27 Score=48.21 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccCCCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 55 DSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 55 ~~~~~~~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|.++...+..++|.|||+|.-|.++|..|.+.|+ +|+++++.+.
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~----~v~v~E~~~~ 52 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGL----RIALIEAQPA 52 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCC----EEEEEecCCc
Confidence 3444455566789999999999999999999995 9999998654
No 420
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.29 E-value=0.35 Score=50.94 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..++|+|||+|..|.+.|..|.+.|+ +|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEEecCC
Confidence 35789999999999999999999995 899998864
No 421
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=92.28 E-value=0.35 Score=46.86 Aligned_cols=72 Identities=15% Similarity=0.322 Sum_probs=48.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-hhcCcCCCc--ccc---ChHHHhhcCCEEEE---eeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDF--ALN---DNHRIIKEAEYVFL---AMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-~~l~~~~g~--~~~---s~~e~~~~aDvIil---aV~~~ 135 (341)
++|||||.|-+|..|+..=..-|+ ++++.+.+++.- .++++. -+ ..+ ...++++.||+|=. -||.+
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~----~v~vLdp~~~~PA~~va~~-~i~~~~dD~~al~ela~~~DViT~EfE~V~~~ 76 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGI----KVIVLDPDADAPAAQVADR-VIVAAYDDPEALRELAAKCDVITYEFENVPAE 76 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCC----EEEEecCCCCCchhhcccc-eeecCCCCHHHHHHHHhhCCEEEEeeccCCHH
Confidence 689999999999999988888784 999999876543 344432 22 223 24566778998843 34555
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
.+..+.
T Consensus 77 aL~~l~ 82 (375)
T COG0026 77 ALEKLA 82 (375)
T ss_pred HHHHHH
Confidence 544443
No 422
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.17 E-value=0.48 Score=43.31 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=33.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++-|+|+ |.+|.++++.|++.|. +|++.+|++++++.+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGA----RVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHh
Confidence 45666665 8899999999999994 89999998877766544
No 423
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.17 E-value=0.26 Score=49.37 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh----hhcCcCCCc--cc-cChHHHhhcCCEEEEe--eCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK----LHWPEPMDF--AL-NDNHRIIKEAEYVFLA--MKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~----~~l~~~~g~--~~-~s~~e~~~~aDvIila--V~~ 134 (341)
.+||.|+|+|.-|.+.++.|.+.|. +|+++|.++... ..+.. .++ .. ..+.+....+|+|+++ +|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~D~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVSDDRPAPEGLAAQPLLL-EGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC----eEEEEcCCCCccchhhhhhhc-cCceeecCccchhccccCCEEEECCCCCC
Confidence 6899999999999999999999994 999999665441 11112 243 11 1222557789999987 454
Q ss_pred H
Q psy316 135 Q 135 (341)
Q Consensus 135 ~ 135 (341)
.
T Consensus 82 ~ 82 (448)
T COG0771 82 T 82 (448)
T ss_pred C
Confidence 3
No 424
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.17 E-value=0.86 Score=41.87 Aligned_cols=85 Identities=8% Similarity=0.074 Sum_probs=52.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|..+++.|++.|+ +|++++|++++.+.+.+++. .......+.++.+ .+..+..
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dl~~~~~~~~ 75 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIVGRNPDKLAAAAEEIE-------ALKGAGAVRYEPADVTDEDQVAR 75 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHHH-------hccCCCceEEEEcCCCCHHHHHH
Confidence 367888886 8999999999999994 89999998776654433110 0000123444433 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|++.+
T Consensus 76 ~~~~~-~~~~--~~~d~li~~ag 95 (276)
T PRK05875 76 AVDAA-TAWH--GRLHGVVHCAG 95 (276)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4333 23346666654
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.17 E-value=0.77 Score=41.56 Aligned_cols=83 Identities=7% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.++|.|.|+ |.+|.++++.|++.|. +|++.+|+++..+.+.++. .. ...++.++.+ .+..+..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA----DVVLAARTAERLDEVAAEI-------DD--LGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HH--hCCceEEEecCCCCHHHHHH
Confidence 467777765 8999999999999994 8999999987665543321 00 0122333332 3456666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||++.+
T Consensus 72 ~~~~~-~~~~--g~~d~vi~~ag 91 (258)
T PRK07890 72 LVALA-LERF--GRVDALVNNAF 91 (258)
T ss_pred HHHHH-HHHc--CCccEEEECCc
Confidence 66665 4333 22246676643
No 426
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.16 E-value=0.37 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+||+|||+|..|.+.|..|.+.|+ +|+++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEEeCCC
Confidence 46899999999999999999999985 899998875
No 427
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=92.10 E-value=0.69 Score=41.78 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
..+++-|+|+ |.+|..+++.|++.|. +|++.+|+++..+.+.
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~----~Vi~~~r~~~~~~~~~ 53 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA----TVILLGRTEEKLEAVY 53 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----cEEEEeCCHHHHHHHH
Confidence 3467777755 8999999999999884 8999999987765543
No 428
>PRK06194 hypothetical protein; Provisional
Probab=92.10 E-value=1.2 Score=41.09 Aligned_cols=82 Identities=9% Similarity=0.053 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|++++|+.+.++.+.+++ . ....++.++.. .+..+.++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~--~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGM----KLVLADVQQDALDRAVAEL-------R--AQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHHHH-------H--hcCCeEEEEECCCCCHHHHHHH
Confidence 46777765 8999999999999994 8999999877655443310 0 01234444443 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ .... .+=.+||++++
T Consensus 74 ~~~~-~~~~--g~id~vi~~Ag 92 (287)
T PRK06194 74 ADAA-LERF--GAVHLLFNNAG 92 (287)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7665 4433 33347777654
No 429
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.73 Score=42.46 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+++.|+|+ |.+|.++++.|++.|+ +|++++|+++..+.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY----LVIATMRNPEKQENLL 44 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHH
Confidence 44666664 9999999999999984 8999999887665543
No 430
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.05 E-value=0.66 Score=39.05 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|.|+|- ...|..++..|.+.|. .|++++++- .+.++.+++||+|+.++....+ ++
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~---i~ 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK---VP 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc---cC
Confidence 467777776 4567777777777663 777776431 1466788999999999964432 22
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ ++|.+|+++
T Consensus 87 ---~~~i--kpGa~Vidv 99 (140)
T cd05212 87 ---TEWI--KPGATVINC 99 (140)
T ss_pred ---HHHc--CCCCEEEEc
Confidence 2246 789898866
No 431
>PLN02427 UDP-apiose/xylose synthase
Probab=92.04 E-value=0.43 Score=46.54 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------CCc--c---cc---ChHHHhhcCCEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------MDF--A---LN---DNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~g~--~---~~---s~~e~~~~aDvI 128 (341)
.|||.|.|+ |-+|+.+++.|++.|. ++|++.+|+.++...+... .++ . .. +..++++.+|+|
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g---~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETP---HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCC---CEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 468999985 9999999999999841 4899999876655443221 012 1 11 234456689999
Q ss_pred EEee
Q psy316 129 FLAM 132 (341)
Q Consensus 129 ilaV 132 (341)
|=+.
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 8443
No 432
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=92.00 E-value=0.95 Score=41.57 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=54.5
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAIQ 142 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl~ 142 (341)
||.+| |+ .-+|.++|+.|.++|+ +|.+..|+.++++.|+.+++ . ..+..+.+=|. +..+...++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~----~vvl~aRR~drL~~la~~~~----~-----~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA----KVVLAARREERLEALADEIG----A-----GAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC----eEEEEeccHHHHHHHHHhhc----c-----CceEEEeeccCCHHHHHHHHH
Confidence 56666 76 6799999999999995 99999999999999988644 1 12222223333 346777777
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
.+ ...+ .+=.++|..+
T Consensus 74 ~~-~~~~--g~iDiLvNNA 89 (246)
T COG4221 74 AL-PEEF--GRIDILVNNA 89 (246)
T ss_pred HH-HHhh--CcccEEEecC
Confidence 66 4444 3334677653
No 433
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=91.94 E-value=0.44 Score=46.54 Aligned_cols=62 Identities=15% Similarity=0.327 Sum_probs=42.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccC---hHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALND---NHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s---~~e~~~~aDvIil 130 (341)
++|||||.|.+|..++....+.|+ +|++++.++.. ...+.++.-+ ...| ..+.++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~----~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGY----KVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC----EEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 589999999999999999999885 89999887543 3333332111 2223 3345667887654
No 434
>PRK05650 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.2 Score=40.75 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+|.|+|+ |.+|..+++.|.+.|. +|++.+|+.++++.+.+++ . ....++.++.+ .+..+.++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~----~V~~~~r~~~~~~~~~~~l-------~--~~~~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW----RLALADVNEEGGEETLKLL-------R--EAGGDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------H--hcCCceEEEEccCCCHHHHHHH
Confidence 46888875 9999999999999984 8999999887665443210 0 01223433333 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..+ ...+ .+=.+||+..+
T Consensus 68 ~~~i-~~~~--~~id~lI~~ag 86 (270)
T PRK05650 68 AQAC-EEKW--GGIDVIVNNAG 86 (270)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4433 22246776644
No 435
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.89 E-value=1.4 Score=39.58 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|+ +|++..|+.+..+...++. .....+.++.+ .+..+.++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGA----RVVVADRDAEAAERVAAAI----------AAGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEecCCHHHHHHHHHHH----------hcCCeEEEEEcCCCCHHHHHHH
Confidence 57888876 9999999999999984 8999999876655433210 01122333322 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++.+
T Consensus 72 ~~~i-~~~~--~~id~vi~~ag 90 (252)
T PRK06138 72 VDFV-AARW--GRLDVLVNNAG 90 (252)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 5444 33346777654
No 436
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.87 E-value=1.2 Score=42.92 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChH---------HHhh-cCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNH---------RIIK-EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~---------e~~~-~aDvIilaV 132 (341)
-+++|+|+|.+|-+-..+...+|. ..|+..|.++++++..++ +|. ..+..+ ++.. .+|..|-|+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAvD~~~~Kl~~A~~-fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~ 262 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAVDINPEKLELAKK-FGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC---ceEEEEeCCHHHHHHHHh-cCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence 579999999999999999999884 689999999999876665 887 333221 1222 588999888
Q ss_pred C-hHHHHHHHHHh
Q psy316 133 K-PQYLDSAIQGL 144 (341)
Q Consensus 133 ~-~~~v~~vl~~i 144 (341)
- ...+++.+.-.
T Consensus 263 G~~~~~~~al~~~ 275 (366)
T COG1062 263 GNVEVMRQALEAT 275 (366)
T ss_pred CCHHHHHHHHHHH
Confidence 4 56666666544
No 437
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.85 E-value=0.93 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|.+.+|++++.+.+.+++ .+ ..+++.++.. .+..+.++
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGA----AVAIADLNQDGANAVADEI-------NK--AGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHH-------Hh--cCceEEEEECCCCCHHHHHHH
Confidence 56788877 9999999999999994 8999999887665543321 00 0123333332 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+-.+||++.+
T Consensus 75 ~~~~-~~~~--~~~d~vi~~ag 93 (262)
T PRK13394 75 IDKV-AERF--GSVDILVSNAG 93 (262)
T ss_pred HHHH-HHHc--CCCCEEEECCc
Confidence 6665 4433 33346777654
No 438
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.74 Score=41.34 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|.+.|+ +|++.+|++++++.+.+++ .. ...++.++.+ .+..+..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGA----TVAFNDGLAAEARELAAAL-------EA--AGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 67888886 9999999999999984 8988899887766543310 00 1123444433 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+-.+||++.+.
T Consensus 75 ~~~~-~~~~--~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAA-AAAL--GGLDGLVNNAGI 94 (250)
T ss_pred HHHH-HHHc--CCCCEEEECCCC
Confidence 6665 4433 233467766543
No 439
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.84 E-value=0.62 Score=42.08 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=50.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|..+++.|++.|+ +|++.+|++++.+.+..+. .. ....+.++.+ .+..+.++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA----KVVIADLNDEAAAAAAEAL-------QK--AGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 5688887 59999999999999984 9999999987766543321 00 0112222221 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+-.+||++++
T Consensus 72 ~~~~-~~~~--~~~d~vi~~a~ 90 (258)
T PRK12429 72 IDYA-VETF--GGVDILVNNAG 90 (258)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6666 4443 33346666543
No 440
>PRK12861 malic enzyme; Reviewed
Probab=91.79 E-value=0.68 Score=49.36 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hh----hcCcCCCccccChHHHhhcCCEEE-Eee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KL----HWPEPMDFALNDNHRIIKEAEYVF-LAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~----~l~~~~g~~~~s~~e~~~~aDvIi-laV 132 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +. .+++.. ...++.|+++.+|++| ++.
T Consensus 190 ~~iv~~GAGaAg~~ia~~l~~~G~-~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG~S~ 266 (764)
T PRK12861 190 VKVVTSGAGAAALACLDLLVDLGL-PVENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLGLSA 266 (764)
T ss_pred cEEEEECHhHHHHHHHHHHHHcCC-ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEEcCC
Confidence 689999999999999999999994 445899988421 11 11 122211 2247899999999877 333
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+.-.-+++++.+ .++.+|..+++..+
T Consensus 267 ~g~ft~e~v~~M-------a~~PIIFaLsNPtp 292 (764)
T PRK12861 267 GGVLKAEMLKAM-------AARPLILALANPTP 292 (764)
T ss_pred CCCCCHHHHHHh-------ccCCEEEECCCCCc
Confidence 323345677666 45678899988874
No 441
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.78 E-value=1.3 Score=41.90 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
..+|+|||.-.--..+++.|.+.|+ +|.++.-..+. ... -|+ ...+.++++.++|+|++.+|+
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~g~~~~~---~~~-~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGA----KVSLVGFDQLD---HGF-TGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeccccc---ccc-CCceeeccHHHHhccCCEEEECCcc
Confidence 4689999999989999999999995 88886543211 112 266 566777889999999999886
No 442
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.77 E-value=0.45 Score=47.57 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=45.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcC-CCc-c-c-cChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEP-MDF-A-L-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~-~g~-~-~-~s~~e~~~~aDvIilaV 132 (341)
-.|.|||.|..|.++|+.|.+.|+ +|+++|+.+. ..+.|.++ .|+ . . ....+.+.++|+||.+-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGI----PFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCC----eEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 469999999999999999999994 9999997542 22345442 265 3 2 12345567899888763
No 443
>PRK07825 short chain dehydrogenase; Provisional
Probab=91.70 E-value=0.96 Score=41.54 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=50.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe-eChHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA-MKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila-V~~~~v~~vl~ 142 (341)
+++.|.|+ |.+|..+++.|.+.|. +|.+.+|++++++.+.++.+ ...++..= ..++.+.++++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~ 70 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGA----RVAIGDLDEALAKETAAELG-----------LVVGGPLDVTDPASFAAFLD 70 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhc-----------cceEEEccCCCHHHHHHHHH
Confidence 56788876 9999999999999984 89999999887765543211 11111111 24566777777
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
++ ...+ .+=.++|+..
T Consensus 71 ~~-~~~~--~~id~li~~a 86 (273)
T PRK07825 71 AV-EADL--GPIDVLVNNA 86 (273)
T ss_pred HH-HHHc--CCCCEEEECC
Confidence 66 4433 2334667654
No 444
>KOG1209|consensus
Probab=91.61 E-value=0.3 Score=44.11 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 63 MWTKVGFIGA--GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 63 m~~kIgiIG~--G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
-.++|.|.|| |-+|.++++-+.++|+ .|+.+.|+.+...+|..++|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~----~V~AtaR~~e~M~~L~~~~gl 54 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY----LVYATARRLEPMAQLAIQFGL 54 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe----EEEEEccccchHhhHHHhhCC
Confidence 3578999999 9999999999999995 999999999999988865665
No 445
>PRK07877 hypothetical protein; Provisional
Probab=91.59 E-value=0.58 Score=49.74 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhc---------------CcC---C----Cc-----
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHW---------------PEP---M----DF----- 113 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l---------------~~~---~----g~----- 113 (341)
..||+|||+| +|+.++..|..+|.+ .+++++|.+. .++.+. ++. . .+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvv--G~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLC--GELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCC--CeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4789999999 999999999999831 3666665532 111111 100 0 11
Q ss_pred -cc-cChHHHhhcCCEEEEeeChHHHHHHHHHh
Q psy316 114 -AL-NDNHRIIKEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 114 -~~-~s~~e~~~~aDvIilaV~~~~v~~vl~~i 144 (341)
.. .+..+.++++|+||=|+-.-..+-.+.+.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 01 13345677899999999766666555543
No 446
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.58 E-value=1.1 Score=40.50 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++ .+ ....+.++.+ .+..+.++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dl~~~~~~~~~ 76 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGA----EIIINDITAERAELAVAKL-------RQ--EGIKAHAAPFNVTHKQEVEAA 76 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHHHHH-------Hh--cCCeEEEEecCCCCHHHHHHH
Confidence 45667765 8999999999999994 9999999877665543321 00 0123333333 34566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.+||+..+
T Consensus 77 ~~~~-~~~~--~~id~vi~~ag 95 (254)
T PRK08085 77 IEHI-EKDI--GPIDVLINNAG 95 (254)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 33346776654
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.50 E-value=0.32 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++.+|...|. .+++++|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 45789999999999999999999996 688888865
No 448
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.49 E-value=0.6 Score=47.11 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..++|.|||+|..|...|..|.+.|+ +|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEEecCC
Confidence 45789999999999999999999885 899998764
No 449
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.41 E-value=1.2 Score=40.73 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=50.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.++.+ ..+.++.+ .+..+.++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA----RVAIVDIDADNGAAVAASLG------------ERARFIATDITDDAAIERA 70 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhC------------CeeEEEEecCCCHHHHHHH
Confidence 46667775 9999999999999994 99999999876665544221 12323322 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|++.+
T Consensus 71 ~~~~-~~~~--g~id~lv~~ag 89 (261)
T PRK08265 71 VATV-VARF--GRVDILVNLAC 89 (261)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6665 4433 22246666543
No 450
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.39 E-value=0.62 Score=41.40 Aligned_cols=84 Identities=8% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC--c-cc--cC----hHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD--F-AL--ND----NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g--~-~~--~s----~~e~~~~aDvIilaV~ 133 (341)
.+++.|||-+ ..|..++.-|.+.|. .|++++.+--.. +..... - .+ .+ ..+.+++||+||.|+.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGA----RVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCC----EEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 5789999985 569999998888874 999997542111 000000 0 11 12 5678899999999996
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
...+. +. ...+ ++|.+||++
T Consensus 136 ~~~~~--i~---~d~i--k~GavVIDV 155 (197)
T cd01079 136 SPNYK--VP---TELL--KDGAICINF 155 (197)
T ss_pred CCCCc--cC---HHHc--CCCcEEEEc
Confidence 43321 11 2235 789999987
No 451
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.37 E-value=1.1 Score=40.77 Aligned_cols=84 Identities=11% Similarity=0.142 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++.+.+.+++ .+.....++.++.+ .+..+..+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~----~vv~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGA----AVALADLDAALAERAAAAI-------ARDVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HhccCCceEEEEEccCCCHHHHHHH
Confidence 45666665 8999999999999994 8999999887766554321 00001223333333 24567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 77 ~~~~-~~~~--g~id~li~~ag 95 (260)
T PRK07063 77 VAAA-EEAF--GPLDVLVNNAG 95 (260)
T ss_pred HHHH-HHHh--CCCcEEEECCC
Confidence 7766 4433 23346776644
No 452
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.35 E-value=0.53 Score=50.19 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hhhcCcCCCc--cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +...+.++.- ...++.|+++.+|++|=...+.
T Consensus 186 ~~iv~~GaGaag~~~a~~l~~~G~-~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g 264 (752)
T PRK07232 186 VKIVVSGAGAAAIACLNLLVALGA-KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAG 264 (752)
T ss_pred cEEEEECccHHHHHHHHHHHHcCC-CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCC
Confidence 689999999999999999999984 345888888641 11 1211111111 2347899999999888333343
Q ss_pred -HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 136 -YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 136 -~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.-+++++.+ .++.+|..+++..+
T Consensus 265 ~~~~~~v~~M-------~~~piifalsNP~~ 288 (752)
T PRK07232 265 VLTPEMVKSM-------ADNPIIFALANPDP 288 (752)
T ss_pred CCCHHHHHHh-------ccCCEEEecCCCCc
Confidence 345667666 45678888888765
No 453
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=91.32 E-value=2.3 Score=41.19 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLH 106 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~ 106 (341)
+-|||+||+|.||+.|+..... .|. +-+.+.+|+...+.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm---~vvaisd~~~~~ak~ 57 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGM---EVVAISDRNLDAAKR 57 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCc---eEEEEecccchHHHH
Confidence 3589999999999999888763 343 334578888766554
No 454
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.31 E-value=0.72 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTG 87 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G 87 (341)
||||+|+|++|..+.+.|.+.+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 6999999999999999988753
No 455
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.27 E-value=1.9 Score=38.99 Aligned_cols=83 Identities=8% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.++|.|.|+ |.+|.++++.|.+.|. +|++..|++++++.+.+++ .. ....+.++.+ .+..+.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~ 75 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA----KVVLASRRVERLKELRAEI-------EA--EGGAAHVVSLDVTDYQSIKA 75 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHHH
Confidence 467888876 9999999999999984 8999999988776554321 00 0112333322 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ .... .+=.+||++.+
T Consensus 76 ~~~~~-~~~~--~~~d~li~~ag 95 (258)
T PRK06949 76 AVAHA-ETEA--GTIDILVNNSG 95 (258)
T ss_pred HHHHH-HHhc--CCCCEEEECCC
Confidence 66665 4433 33346776654
No 456
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=91.25 E-value=0.99 Score=40.63 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHW 107 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l 107 (341)
|+++|.|.|+ |.+|..+++.|++.|. +|.+. .|++++.+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~----~v~~~~~~~~~~~~~~ 43 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGW----SVGINYARDAAAAEET 43 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHH
Confidence 6678888876 8899999999999984 77654 5666655443
No 457
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.24 E-value=0.88 Score=41.29 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA----QVAIAARHLDALEKLADEI-------GT--SGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHH-------Hh--cCCeEEEEEccCCCHHHHHHH
Confidence 45667776 8999999999999994 8999999987766554321 00 0122333322 35566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++.+
T Consensus 77 ~~~~-~~~~--g~id~lv~~ag 95 (253)
T PRK05867 77 LDQV-TAEL--GGIDIAVCNAG 95 (253)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 7665 4433 33346666643
No 458
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.19 E-value=1.5 Score=42.07 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ..+++.++.+ .+..++.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~----~Vvl~~R~~~~l~~~~~~l-------~~--~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA----KVVLLARGEEGLEALAAEI-------RA--AGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HH--cCCcEEEEEecCCCHHHHHHH
Confidence 45777776 9999999999999994 8999999987766544321 10 1234444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+..+
T Consensus 76 ~~~~-~~~~--g~iD~lInnAg 94 (334)
T PRK07109 76 ADRA-EEEL--GPIDTWVNNAM 94 (334)
T ss_pred HHHH-HHHC--CCCCEEEECCC
Confidence 7766 4444 33346776643
No 459
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.12 E-value=1 Score=43.05 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=49.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.++.|+|+|.+|...++.....|. +|++.++++++.+.+++ +|+ . ........+..|+++.++. +..+...+
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~~~~~~~~~~a~~-~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~ 241 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGA----TVHVMTRGAAARRLALA-LGAASAGGAYDTPPEPLDAAILFAPAGGLVPPAL 241 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHH-hCCceeccccccCcccceEEEECCCcHHHHHHHH
Confidence 579999999999888776667773 78888999888876665 787 2 2211111234687777664 33444444
Q ss_pred HHh
Q psy316 142 QGL 144 (341)
Q Consensus 142 ~~i 144 (341)
+-+
T Consensus 242 ~~l 244 (329)
T TIGR02822 242 EAL 244 (329)
T ss_pred Hhh
Confidence 433
No 460
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.10 E-value=1.7 Score=39.03 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=33.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.+++.|.|+ |.+|.++++.|.+.|. +|++.+|+++.++.+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA----RVAITGRDPASLEAARA 48 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEecCCHHHHHHHHH
Confidence 357888876 9999999999999984 89999998776654433
No 461
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.08 E-value=0.39 Score=43.83 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-CCc--c---ccC----hHHHh-hcCCEEEEe
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-MDF--A---LND----NHRII-KEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-~g~--~---~~s----~~e~~-~~aDvIila 131 (341)
+|+|.|+|+ |.+|..+++.|++.| ++|++..|++++...+..+ .++ . ..+ ..+.+ ...|+||.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g----~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG----FAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC----CEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 368999995 999999999999988 4899999988776543321 122 1 112 12334 468888877
Q ss_pred eC
Q psy316 132 MK 133 (341)
Q Consensus 132 V~ 133 (341)
..
T Consensus 93 ~g 94 (251)
T PLN00141 93 TG 94 (251)
T ss_pred CC
Confidence 54
No 462
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.07 E-value=2.1 Score=39.08 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=53.6
Q ss_pred CCCCC-CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---Ch
Q psy316 60 HVPMW-TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KP 134 (341)
Q Consensus 60 ~~~m~-~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~ 134 (341)
.++|. +++-|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+++ .. ..+++.++.+ .+
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~----~vv~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~ 71 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGA----TIVFNDINQELVDKGLAAY-------RE--LGIEAHGYVCDVTDE 71 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEcCCCCH
Confidence 34554 44666665 8999999999999984 8999999887665543311 00 1234444443 34
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.+++.++ ...+ .+=..+|++++
T Consensus 72 ~~~~~~~~~~-~~~~--~~id~li~~ag 96 (265)
T PRK07097 72 DGVQAMVSQI-EKEV--GVIDILVNNAG 96 (265)
T ss_pred HHHHHHHHHH-HHhC--CCCCEEEECCC
Confidence 5677777766 5444 33246676644
No 463
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.07 E-value=1.5 Score=40.59 Aligned_cols=82 Identities=9% Similarity=0.014 Sum_probs=51.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|.++++.|.+.|. +|++.+|+++.++.+.+++ . ....++.++.+ .+..+..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~----~Vv~~~r~~~~l~~~~~~l-------~--~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA----RVVLGDVDKPGLRQAVNHL-------R--AEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------H--hcCCeEEEEeCCCCCHHHHHHH
Confidence 3455555 58999999999999994 8999999887665443210 0 01223444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|+.++
T Consensus 74 ~~~~-~~~~--g~id~li~nAg 92 (275)
T PRK05876 74 ADEA-FRLL--GHVDVVFSNAG 92 (275)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 4444 33347777643
No 464
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.05 E-value=1.3 Score=37.19 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+.|+| .|.+|.++++.|++.|. ..|+++.|+ .++.+.+.++ .. -....+.++.. .+..++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~---~~v~~~~r~~~~~~~~~l~~~-------l~--~~~~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA---RVVILTSRSEDSEGAQELIQE-------LK--APGAKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT---EEEEEEESSCHHHHHHHHHHH-------HH--HTTSEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc---eEEEEeeeccccccccccccc-------cc--ccccccccccccccccccccc
Confidence 466776 59999999999999963 588899998 4555444321 11 11233444442 4567888
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+++++ .... .+=.++|.+.+...
T Consensus 70 ~~~~~-~~~~--~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 70 LIEEV-IKRF--GPLDILINNAGIFS 92 (167)
T ss_dssp HHHHH-HHHH--SSESEEEEECSCTT
T ss_pred ccccc-cccc--cccccccccccccc
Confidence 88887 5333 33357887755543
No 465
>PRK05717 oxidoreductase; Validated
Probab=91.04 E-value=1.8 Score=39.25 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
+++.|.|+ |.+|..+++.|++.|. +|++.+|++++.+.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~~~~~~~~~~~ 50 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW----QVVLADLDRERGSKV 50 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC----EEEEEcCCHHHHHHH
Confidence 56777775 9999999999999984 899999887655443
No 466
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.03 E-value=1.5 Score=38.80 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|+|+ |.+|..+++.|++.|+ +|++.+|++++.....++.. .....++..-+. +..+..++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA----RVALIGRGAAPLSQTLPGVP---------ADALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC----eEEEEeCChHhHHHHHHHHh---------hcCceEEEeecCCHHHHHHHH
Confidence 367888876 9999999999999984 89999998766443222100 011223322232 45566666
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+-.+|++..+
T Consensus 74 ~~~-~~~~--~~~d~vi~~ag 91 (239)
T PRK12828 74 DEV-NRQF--GRLDALVNIAG 91 (239)
T ss_pred HHH-HHHh--CCcCEEEECCc
Confidence 665 4433 33346666543
No 467
>KOG1399|consensus
Probab=91.00 E-value=0.27 Score=49.36 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.|.++++|||+|.-|.+-|+.|++.|+ +++++.|+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~----~v~vfEr~~ 39 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH----EVVVFERTD 39 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC----CceEEEecC
Confidence 468899999999999999999999995 777777654
No 468
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.99 E-value=1.6 Score=39.54 Aligned_cols=80 Identities=9% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|..+++.|++.|. +|++.+|+.++.+.+.++.+ ..+.++.+ .+..+..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~----~v~~~~r~~~~~~~~~~~~~------------~~~~~~~~D~~~~~~~~~ 69 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA----RVVIADIKPARARLAALEIG------------PAAIAVSLDVTRQDSIDR 69 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHHHHhC------------CceEEEEccCCCHHHHHH
Confidence 356778875 9999999999999994 89999999887665543211 11222222 3456666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.+ ...+ .+=.++|++++
T Consensus 70 ~~~~~-~~~~--~~id~li~~ag 89 (257)
T PRK07067 70 IVAAA-VERF--GGIDILFNNAA 89 (257)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4433 33346676644
No 469
>KOG3007|consensus
Probab=90.95 E-value=0.31 Score=45.26 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=64.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----C---C--c-cccChHHHhhcCCEEEEeeChH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----M---D--F-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~---g--~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
-..++|.|..+-.......+.-- .-.+|.+|+|+++.++.+++. + . + ...+.++++..+|||+-|++..
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~~p-slreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKLIP-SLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred EEEEEcccchhHHHHHHHHHhcc-cceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 36788999999888877665421 135899999999887766542 2 1 2 4567788899999999998754
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
. .++. ...+ +++ ..|++.++.++.
T Consensus 219 e--Pilf---gewl--kpg-thIdlVGsf~p~ 242 (333)
T KOG3007|consen 219 E--PILF---GEWL--KPG-THIDLVGSFKPV 242 (333)
T ss_pred C--ceee---eeee--cCC-ceEeeeccCCch
Confidence 2 2221 2345 566 667888887764
No 470
>KOG0023|consensus
Probab=90.95 E-value=5.2 Score=38.35 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=28.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD 112 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g 112 (341)
.+++||+|+|-+|+.=.+.-..-| .+|++++++..+.+.+.+.+|
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG----~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMG----MRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhC----cEEEEEeCCchhHHHHHHhcC
Confidence 378999988766653333223346 499999998755554444355
No 471
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.88 E-value=1.9 Score=39.05 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=51.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA----KVVVGARRQAELDQLVAEI-------RA--EGGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 46777775 8999999999999994 8999999987766554321 00 0123444433 35566667
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 74 ~~~~-~~~~--~~id~li~~ag 92 (254)
T PRK07478 74 VALA-VERF--GGLDIAFNNAG 92 (254)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 22235666543
No 472
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.81 E-value=1.3 Score=41.69 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=50.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |-+|.++++.|++.|. +|++..|++++.+...++ ..+.....++.++.+ ....++.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~----~vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGA----HVVLAVRNLDKGKAAAAR-------ITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHHhCCCCceEEEECCCCCHHHHHHH
Confidence 56777765 9999999999999984 899999988765543221 011011233444333 24556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 86 ~~~~-~~~~--~~iD~li~nAg 104 (306)
T PRK06197 86 ADAL-RAAY--PRIDLLINNAG 104 (306)
T ss_pred HHHH-HhhC--CCCCEEEECCc
Confidence 6666 4433 22246666643
No 473
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.80 E-value=1.1 Score=42.90 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeCh----HH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKP----QY 136 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~----~~ 136 (341)
.++.|+|+|.+|...++.+.+ .|. .+|+++++++++++.+++ .+. ... .+... ..|+||=++-. ..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~~~~~~k~~~a~~-~~~~~~~--~~~~~~~g~d~viD~~G~~~~~~~ 238 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPE---SKLVVFGKHQEKLDLFSF-ADETYLI--DDIPEDLAVDHAFECVGGRGSQSA 238 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCC---CcEEEEeCcHhHHHHHhh-cCceeeh--hhhhhccCCcEEEECCCCCccHHH
Confidence 579999999999987776654 342 378999999988877654 444 211 11112 37899988852 34
Q ss_pred HHHHHHHh
Q psy316 137 LDSAIQGL 144 (341)
Q Consensus 137 v~~vl~~i 144 (341)
+.+.++-+
T Consensus 239 ~~~~~~~l 246 (341)
T cd08237 239 INQIIDYI 246 (341)
T ss_pred HHHHHHhC
Confidence 44444433
No 474
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.77 E-value=2.1 Score=40.12 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|.+.|. +|++.+|++++++.+.++++ ...+++.+.+ .+..+.++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~l~~~~~~l~----------~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA----KLALVDLEEAELAALAAELG----------GDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhc----------CCCcEEEEEecCCCHHHHHHH
Confidence 46777775 8999999999999994 89999999887776554321 0123333222 35567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 76 ~~~~-~~~~--g~id~vI~nAG 94 (296)
T PRK05872 76 AEEA-VERF--GGIDVVVANAG 94 (296)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 5444 33246776644
No 475
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.74 E-value=1.9 Score=39.07 Aligned_cols=82 Identities=12% Similarity=0.223 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.++. .+ ...++.++.+ .+..+..+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~----~Vi~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA----NVVITGRTKEKLEEAKLEI-------EQ--FPGQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHHHH
Confidence 46777766 7899999999999984 8999999987665543311 00 0123444433 45667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|++.+
T Consensus 69 ~~~~-~~~~--~~id~lI~~ag 87 (252)
T PRK07677 69 VEQI-DEKF--GRIDALINNAA 87 (252)
T ss_pred HHHH-HHHh--CCccEEEECCC
Confidence 7666 4433 23246777654
No 476
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.74 E-value=0.52 Score=50.93 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=45.1
Q ss_pred eEEEEcccHHHHHH-HHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-ccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQAV-ATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~~s~~e~~~~aDvIila 131 (341)
+|.|||+|..|.+. |+.|.+.|+ +|+++|.++. ..+.|.+ .|+ . .....+.+..+|+||.+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~----~V~~sD~~~~~~~~~L~~-~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGY----SVSGSDLSEGKTVEKLKA-KGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCC----eEEEECCCCChHHHHHHH-CCCEEeCCCCHHHcCCCCEEEEC
Confidence 59999999999997 999999994 9999997542 3344544 476 2 23344566789999876
No 477
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.71 E-value=1 Score=45.42 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|.+|..=++.|++.|. +|+++.+.- ..+..+.++..+ . -.-..+.++.+++||.|+.+..+..
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga----~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~ 87 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGA----RLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQ 87 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhH
Confidence 4789999999999998999999984 899886532 233344332122 1 1112355789999999998766554
Q ss_pred HH
Q psy316 140 AI 141 (341)
Q Consensus 140 vl 141 (341)
-+
T Consensus 88 ~i 89 (457)
T PRK10637 88 RV 89 (457)
T ss_pred HH
Confidence 44
No 478
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.70 E-value=1.6 Score=41.13 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=49.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl~~ 143 (341)
.++.|+|+|.+|...++.+...|. ..|.++++++++++...+ +.+ .+...+.-...|+||-|+-. ..+...++-
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~---~~v~~~~~~~~rl~~a~~-~~~-i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGG---SPPAVWETNPRRRDGATG-YEV-LDPEKDPRRDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC---ceEEEeCCCHHHHHhhhh-ccc-cChhhccCCCCCEEEECCCCHHHHHHHHHh
Confidence 479999999999988877766774 457778888877765433 332 11111112358999999975 456666655
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
+
T Consensus 221 l 221 (308)
T TIGR01202 221 L 221 (308)
T ss_pred h
Confidence 5
No 479
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=90.66 E-value=0.43 Score=44.01 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=42.7
Q ss_pred EEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEee
Q psy316 68 GFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 68 giIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV 132 (341)
.|.| +|.+|+.+++.|++.| ++|++.+|++.....+.. .++ ......+.+..+|+||-+.
T Consensus 2 lVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~Vvh~a 65 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDG----HEVTILTRSPPAGANTKW-EGYKPWAPLAESEALEGADAVINLA 65 (292)
T ss_pred EEEcccchhhHHHHHHHHHcC----CEEEEEeCCCCCCCcccc-eeeecccccchhhhcCCCCEEEECC
Confidence 4666 5999999999999988 499999998776544332 122 1123345567899999776
No 480
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=90.65 E-value=1.4 Score=41.73 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+|++++.|.|+ +.+|.++++.|++.|. ++|++..|+.++.+.+.++++. ....+.++.+ .+..+
T Consensus 1 ~~~k~vlITGas~GIG~aia~~L~~~G~---~~V~l~~r~~~~~~~~~~~l~~---------~~~~~~~~~~Dl~~~~~v 68 (314)
T TIGR01289 1 QQKPTVIITGASSGLGLYAAKALAATGE---WHVIMACRDFLKAEQAAKSLGM---------PKDSYTIMHLDLGSLDSV 68 (314)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhcC---------CCCeEEEEEcCCCCHHHH
Confidence 46677777777 7899999999999881 3899999998776655432110 1122333332 34567
Q ss_pred HHHHHHhhhcccccCCCcEEEEec
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.++ .... .+=.++|..+
T Consensus 69 ~~~~~~~-~~~~--~~iD~lI~nA 89 (314)
T TIGR01289 69 RQFVQQF-RESG--RPLDALVCNA 89 (314)
T ss_pred HHHHHHH-HHhC--CCCCEEEECC
Confidence 7777666 4333 2223566553
No 481
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.64 E-value=0.35 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|+|.|||+|-+|.+.|..|.+.|. +|+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~----~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH----EVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC----EEEEEeCCC
Confidence 579999999999999999999984 899999864
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.61 E-value=1.7 Score=38.93 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|.+.|. +|++.+|++++.+.+.++. .+ ...++.++.+ .+..+.++
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~----~vi~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 72 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGA----KLALIDLNQEKLEEAVAEC-------GA--LGTEVRGYAANVTDEEDVEAT 72 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEcCCCCHHHHHHH
Confidence 57888887 9999999999999984 8999999887655433210 00 0223333333 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=..||+..+
T Consensus 73 ~~~~-~~~~--~~id~vi~~ag 91 (253)
T PRK08217 73 FAQI-AEDF--GQLNGLINNAG 91 (253)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4333 22236676543
No 483
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=90.57 E-value=0.35 Score=47.29 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc--CCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT--GLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~--G~~~~~~V~v~~r~~ 101 (341)
|+..|.|||+|-+|.++|..|.+. | .+|+++++.+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g----~~V~llE~~~ 37 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPG----ARIAVLEKES 37 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCC----CeEEEEeCCC
Confidence 456799999999999999999988 7 4999999864
No 484
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.56 E-value=0.46 Score=47.54 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=43.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hh----hhcCcCCCc-c-ccC-hH-----HHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FK----LHWPEPMDF-A-LND-NH-----RIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~----~~l~~~~g~-~-~~s-~~-----e~~~~aDvIilaV 132 (341)
||.|||+|..|.+.|+.|.+.|+ +|.++|+++. .. +.+.+ .|+ . ... .. +...+.|+||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~D~~~~~~~~~~~~~l~~-~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVSDRNDSPELLERQQELEQ-EGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEECCCCchhhHHHHHHHHH-cCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 69999999999999999999994 9999997543 11 23444 465 2 111 11 2466799988854
No 485
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.55 E-value=0.65 Score=46.38 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh--hhhcCcC-CCc-c-ccC-hHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF--KLHWPEP-MDF-A-LND-NHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~--~~~l~~~-~g~-~-~~s-~~e~~~~aDvIilaV 132 (341)
.++|.|+|.|..|.+.++.|.+.|. +|+++|.++.. .+++.+. .|+ . ... ..+...++|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA----EVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 4689999999999999999999994 89999875432 3344331 255 2 122 233456899999875
No 486
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.51 E-value=1.1 Score=40.27 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=33.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.+++.|.|+ |-+|..+++.|++.|. +|++.+|+++..+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA----SVVVADINAEGAERV 46 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHH
Confidence 467888887 9999999999999984 899999987665443
No 487
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.47 E-value=0.73 Score=43.30 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||-+ ..|..++..|...|. .|+++.++. .+..+.+++||+||.+++-..+ +.
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~l---v~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADA----TVTICHSKT--------------ENLKAELRQADILVSAAGKAGF---IT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCC----eeEEEecCh--------------hHHHHHHhhCCEEEECCCcccc---cC
Confidence 4688888888 888888888877763 788776542 1456778899999999962222 21
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
...+ +++.+||++.
T Consensus 211 ---~~~v--k~GavVIDVg 224 (279)
T PRK14178 211 ---PDMV--KPGATVIDVG 224 (279)
T ss_pred ---HHHc--CCCcEEEEee
Confidence 2235 7889999873
No 488
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.46 E-value=1.2 Score=40.63 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++.+.+.+++ .. ....+.++.+ .+..+..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~----~Vi~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGA----DVLIAARTESQLDEVAEQI-------RA--AGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 56777766 6899999999999984 9999999987766543321 00 0122322222 35566677
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 78 ~~~~-~~~~--~~id~vi~~Ag 96 (263)
T PRK07814 78 AGQA-VEAF--GRLDIVVNNVG 96 (263)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7666 4433 33347777654
No 489
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.44 E-value=1.9 Score=42.65 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhc-CcCCCc--cc-cC---h-HHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHW-PEPMDF--AL-ND---N-HRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l-~~~~g~--~~-~s---~-~e~~~~aDvIilaV~ 133 (341)
.||.+.|+|.-|-++++.|.+.|. ++.+|+++||.- +..+.+ -.++.. .. .. . .+++..+|++|=+..
T Consensus 200 ~kiv~~GAGAAgiaia~~l~~~g~-~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~ 278 (432)
T COG0281 200 QKIVINGAGAAGIAIADLLVAAGV-KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSG 278 (432)
T ss_pred eEEEEeCCcHHHHHHHHHHHHhCC-CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEcCC
Confidence 689999999999999999999994 667999999852 111111 010111 00 00 0 346778998886554
Q ss_pred hHHH-HHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 134 PQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 134 ~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
+..+ +++++++ .++.+|..+++..+ ++.+.++-+
T Consensus 279 ~G~~t~e~V~~M-------a~~PiIfalaNP~pEi~Pe~a~~~~~ 316 (432)
T COG0281 279 VGAFTEEMVKEM-------AKHPIIFALANPTPEITPEDAKEWGD 316 (432)
T ss_pred CCCcCHHHHHHh-------ccCCEEeecCCCCccCCHHHHhhcCC
Confidence 4443 4566666 45678888888764 455555543
No 490
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.43 E-value=0.85 Score=44.96 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA 98 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~ 98 (341)
|.+||+|.|+|++|..+.+.|.+..+ +..+|...|
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~-~~~evvaIN 93 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD-SPLDVVAIN 93 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC-CCeEEEEEc
Confidence 77899999999999999999887642 334666443
No 491
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=90.43 E-value=2.7 Score=35.19 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+++|+ .+-+..+++.|.++|+ +|+=.|..-.- +.+ +|. ...|+.++-..-|+|-+-.++..+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPVNP~~~~-~ei---LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPVNPKLAG-EEI---LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEeeCcccch-HHh---cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999999 6778889999999994 88877763221 222 465 6778888888999999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++++. + ..+.-++.+.-|+.-++.++.+.
T Consensus 88 ~i~~ea----l--~~~~kv~W~QlGi~n~ea~~~~~ 117 (140)
T COG1832 88 EVAREA----L--EKGAKVVWLQLGIRNEEAAEKAR 117 (140)
T ss_pred HHHHHH----H--hhCCCeEEEecCcCCHHHHHHHH
Confidence 999876 2 23345667777777665555443
No 492
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.42 E-value=0.88 Score=42.80 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=52.1
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|||-+ ..|..++..|.+.|. .|+++.... .+..+.+++||+||.|+. |..+.
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~--- 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANA----TVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLIT--- 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCC----EEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccC---
Confidence 4789999998 889999999988874 888875321 145677899999999995 44321
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 216 ----~~~v--k~gavvIDv 228 (281)
T PRK14183 216 ----EDMV--KEGAIVIDI 228 (281)
T ss_pred ----HHHc--CCCcEEEEe
Confidence 2245 788899886
No 493
>PRK06753 hypothetical protein; Provisional
Probab=90.40 E-value=0.36 Score=46.66 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|+|.|||+|.-|.+.|..|.+.|+ +|++++|++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~----~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH----EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEEecCCc
Confidence 589999999999999999999995 8999998764
No 494
>PRK12862 malic enzyme; Reviewed
Probab=90.38 E-value=1.2 Score=47.78 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=66.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hhhcCcCCCc--cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +...+..+.- ...++.|+++.+|++|=+..+.
T Consensus 194 ~~iv~~GaGaag~~~a~~l~~~G~-~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g 272 (763)
T PRK12862 194 VKLVASGAGAAALACLDLLVSLGV-KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAG 272 (763)
T ss_pred cEEEEEChhHHHHHHHHHHHHcCC-CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCC
Confidence 689999999999999999999994 445899998531 11 1111111110 2247889999999988333344
Q ss_pred -HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhc
Q psy316 136 -YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKL 173 (341)
Q Consensus 136 -~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l 173 (341)
.-+++++.+ .++.+|..+++..+ .+...++.
T Consensus 273 ~~~~~~v~~M-------~~~piifalsNP~~E~~p~~a~~~~ 307 (763)
T PRK12862 273 VLKPEMVKKM-------APRPLIFALANPTPEILPEEARAVR 307 (763)
T ss_pred CCCHHHHHHh-------ccCCEEEeCCCCcccCCHHHHHHhc
Confidence 345677666 45678888888764 34444543
No 495
>PRK06182 short chain dehydrogenase; Validated
Probab=90.35 E-value=1.9 Score=39.65 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+++.|.|+ |.+|.++++.|.+.|+ +|++.+|++++++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~----~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGY----TVYGAARRVDKMEDLA 44 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHH
Confidence 56778876 9999999999999984 9999999987766543
No 496
>PRK14851 hypothetical protein; Provisional
Probab=90.33 E-value=1.5 Score=46.44 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||+|||+|-+|+.++..|...|. .+++++|.+.
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GV---G~l~LvD~D~ 77 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGI---GRFHIADFDQ 77 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCC---CeEEEEcCCE
Confidence 4689999999999999999999996 6888888754
No 497
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.31 E-value=0.63 Score=46.99 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=45.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh----hhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER----FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e----~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
.+||+|+|+|.=|.+.++.|.+.|. +|+++|.++. ..++|.+ .+. . .....+.+.++|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP----AQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC----EEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECC
Confidence 4689999999999999999999995 8999995422 1123433 233 2 223345677899998774
No 498
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.26 E-value=0.81 Score=41.65 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c------ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A------LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~------~~s~~e~~~~aDvIilaV~ 133 (341)
|+|.|.|+ |.+|+.+++.|++.| ++|.+..|+++++..+. .++ . ..+....++..|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~----~~v~~~~r~~~~~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG----HEVRAAVRNPEAAAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC----CEEEEEEeCHHHHHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 57889965 999999999999998 59999999999988877 243 1 1233455678898888887
No 499
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=90.18 E-value=0.38 Score=47.16 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|..+|.|||+|..|.+.|..|.+.|+ +|.++++.++
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~----~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGI----DNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCC----CEEEEECCCC
Confidence 56789999999999999999999995 8999998764
No 500
>PRK14031 glutamate dehydrogenase; Provisional
Probab=90.18 E-value=0.76 Score=46.03 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASA 98 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~ 98 (341)
..+||.|.|.||+|...++.|.+.|. +|+ ++|
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~GA----kVVaVSD 259 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLELGG----KVVTMSD 259 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEC
Confidence 35799999999999999999999995 665 466
Done!