RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy316
(341 letters)
>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 216 bits (554), Expect = 3e-69
Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 39/283 (13%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFAL------- 115
M K+GFIG GNMA A+ L+ +G+ II S PS PE
Sbjct: 1 MMKKIGFIGGGNMASAIIGGLLASGVP-AKDIIVSDPS-------PEKRAALAEEYGVRA 52
Query: 116 -NDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174
DN +EA+ V LA+KPQ ++ + L K L+ ++S+ GV L L++ L
Sbjct: 53 ATDNQEAAQEADVVVLAVKPQVMEEVLSEL---KGQLDKL--VVSIAAGVTLARLERLL- 106
Query: 175 VLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIP 234
D P ++R MPNT G G+T + + + E + ++ G V +
Sbjct: 107 -----GADLP-VVRAMPNTPALVGAGMTALTANALVSAE--DRELVENLLSAFGKVVWVD 158
Query: 235 -ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLL 293
E M++ A++GSG AY+FL ++A+AD VK G+PR+ A ++ AQ + G+ +L+ +
Sbjct: 159 DEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE--- 215
Query: 294 RMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+ HPA ++D + SPGG+TIA + LE+ G+R A
Sbjct: 216 -----SGEHPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIEA 253
>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid
transport and metabolism].
Length = 266
Score = 214 bits (548), Expect = 2e-68
Identities = 89/277 (32%), Positives = 149/277 (53%), Gaps = 23/277 (8%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR-IIK 123
K+GFIGAGNM +A+ + L+++G P +II + SE + +++ ++
Sbjct: 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE 61
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
EA+ VFLA+KPQ L+ + L + +IS+ GV +ETL++ L
Sbjct: 62 EADVVFLAVKPQDLEEVLSKLKPL----TKDKLVISIAAGVSIETLERLL--------GG 109
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243
++RVMPNT G G+T + + ++ +E ++ G V + ES+M++ A
Sbjct: 110 LRVVRVMPNTPALVGAGVTAISANANVSEE--DKAFVEALLSAVGKVVEVEESLMDAVTA 167
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
++GSG AY+FL ++A+AD V+ G+PR+ A + AQ + G+ +L+ + HP
Sbjct: 168 LSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLES--------GEHP 219
Query: 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
A ++DQ+ SPGG+TIAG+ LE+ G R A
Sbjct: 220 AELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAA 256
>gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase. This enzyme
catalyzes the final step in proline biosynthesis. Among
the four paralogs in Bacillus subtilis (proG, proH,
proI, and comER), ComER is the most divergent and does
not prevent proline auxotrophy from mutation of the
other three. It is excluded from the seed and scores
between the trusted and noise cutoffs [Amino acid
biosynthesis, Glutamate family].
Length = 245
Score = 193 bits (492), Expect = 3e-60
Identities = 92/271 (33%), Positives = 148/271 (54%), Gaps = 39/271 (14%)
Query: 83 LIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------ALNDNHRIIKEAEYVFLAMKP 134
L++ G II S PE + A +D +KEA+ VFLA+KP
Sbjct: 1 LLKAGALAAYDIIVINRS-------PEKLAALAKELGIVASSDAQEAVKEADVVFLAVKP 53
Query: 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTA 194
Q L+ + L ++K + +IS+ GV LE L + L ++RVMPNT
Sbjct: 54 QDLEEVLSELKSEK---GKDKLLISIAAGVTLEKLSQLL------GGTRR-VVRVMPNTP 103
Query: 195 MKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFL 254
K G G+T + + ++ E + + + + G V +PE++M++ A++GSG AY+FL
Sbjct: 104 AKVGAGVTAIAANANVS--EEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161
Query: 255 VMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314
++A+AD VKQG+PR++AL + AQ +KG+ +L+ + + HPA++KDQ+ SPG
Sbjct: 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEE--------SGEHPALLKDQVTSPG 213
Query: 315 GSTIAGIHALEKAGVRTPFS----SAARRTK 341
G+TIAG+ LE+ GVR +A RR++
Sbjct: 214 GTTIAGLAVLEEKGVRGAVIEAVEAAVRRSR 244
>gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase.
Length = 266
Score = 184 bits (469), Expect = 1e-56
Identities = 80/282 (28%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--------ERFKLHWPEPMDFALN 116
+VGFIGAG MA+A+A L+ +G+ P++I + S + +
Sbjct: 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVK-------TAA 53
Query: 117 DNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVL 176
N ++K ++ + LA+KPQ + + L + L+ + ++S+ G+ L L++
Sbjct: 54 SNTEVVKSSDVIILAVKPQVVKDVLTEL---RPLLSKDKLLVSVAAGITLADLQEWAGG- 109
Query: 177 VPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236
++RVMPNT G+ + M ++ ++ + G + ++ E
Sbjct: 110 -------RRVVRVMPNTPCLVGEAASVMSLGPAAT--ADDRDLVATLFGAVGKIWVVDEK 160
Query: 237 MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMD 296
++++ ++GSG AY+FL ++A+ADG V G+PRD+AL + AQ + G+ ++V +
Sbjct: 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLET----- 215
Query: 297 HAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
HP +KD + SPGG+TIAG+H LEK G R +A
Sbjct: 216 ---GKHPGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNAVV 254
>gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed.
Length = 279
Score = 144 bits (365), Expect = 4e-41
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 24/263 (9%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNH---RIIK 123
+ F+GAG++A+A+ L+ + QI S S +L + + H ++
Sbjct: 6 ISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH-QKYGVKGTHNKKELLT 64
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+A +FLAMKP+ + L+ K +++++ IIS+L GV +++ L VP
Sbjct: 65 DANILFLAMKPK---DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVP----- 116
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243
IIR MPNT+ K T + H E H+ A + E G+V ++ E M++ A
Sbjct: 117 --IIRAMPNTSAAILKSATAISPSKHATAE--HIQTAKALFETIGLVSVVEEEDMHAVTA 172
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
++GSG AY++ V++AM A K G+ D+A + Q + G+ + M A++ HP
Sbjct: 173 LSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE--------MLKASEKHP 224
Query: 304 AVIKDQICSPGGSTIAGIHALEK 326
++++ +I SPGG+T AGI L++
Sbjct: 225 SILRKEITSPGGTTEAGIEVLQE 247
>gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed.
Length = 272
Score = 120 bits (301), Expect = 7e-32
Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 21/278 (7%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRI 121
M ++GFIG GNM A+ +I + P QII S + K + +N+ +
Sbjct: 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEV 60
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
A+ + L++KP S I + + + + ++++ G +++ + + +
Sbjct: 61 ANSADILILSIKPDLYSSVINQIKDQ---IKNDVIVVTIAAGKSIKSTENEFDRKL---- 113
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
+IRVMPNT + G+G++ +C + + ++ + + I G E++ E +M+
Sbjct: 114 ---KVIRVMPNTPVLVGEGMSALCFNEMVTEKD--IKEVLNIFNIFGQTEVVNEKLMDVV 168
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
+I+GS AY+++ ++AMAD AV G+PR A + AQ + GS ++V +
Sbjct: 169 TSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLE--------TGI 220
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARR 339
HP +KD +CSPGG+TI + LE+ G+RT SA +R
Sbjct: 221 HPGELKDMVCSPGGTTIEAVATLEEKGLRTAIISAMKR 258
>gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional.
Length = 260
Score = 115 bits (289), Expect = 3e-30
Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 27/261 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
+VGFIG G M A+A + + + I PS++ P + L N + K
Sbjct: 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK-----NTPFVY-LQSNEELAKTC 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KP D A + L+ K L S+ +IS+ G++L+TL++ + V
Sbjct: 59 DIIVLAVKP---DLAGKVLLEIKPYL-GSKLLISICGGLNLKTLEEMVGV-------EAK 107
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
I+RVMPNT G+G C + ++D S I I GI++ I E M+ AI+
Sbjct: 108 IVRVMPNTPSLVGQGSLVFCANNNVD--STDKKKVIDIFSACGIIQEIKEKDMDIATAIS 165
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
G G AY+FL ++++ D VK G+ RD++ + Q + GS +V D Q
Sbjct: 166 GCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKAS----DQPVQQ---- 217
Query: 306 IKDQICSPGGSTIAGIHALEK 326
+KD +CSPGG TI G++ LEK
Sbjct: 218 LKDDVCSPGGITIVGLYTLEK 238
>gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed.
Length = 245
Score = 86.7 bits (215), Expect = 9e-20
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDFALNDNHR-IIKEAE 126
FIGAG MA+A+ + L++T +II S S KL + + + + + +
Sbjct: 9 FIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVD 68
Query: 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTI 186
+ LAM P SA + L+ + L S++ ++++ G+ L+++L P P
Sbjct: 69 TIVLAMPP----SAHEELLAELSPLLSNQLVVTVAAGIGPSYLEERL------PKGTPVA 118
Query: 187 IRVMPNTAMKYGKGIT--GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+MPNTA + GK I+ M V+ + E L + +K + G ++ E ++ A+
Sbjct: 119 W-IMPNTAAEIGKSISLYTMGQSVN-ETHKETLQLILKGI---GTSQLCTEEEVHQLTAV 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
GS A+L+ +++ + G+ + A + Q++ GS ++ + PA
Sbjct: 174 TGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ---------TQDPA 224
Query: 305 VIKDQICSPGGSTIAGIHALE 325
+++Q+ +PGGST G+ AL
Sbjct: 225 NLREQVTTPGGSTAEGLKALY 245
>gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed.
Length = 258
Score = 59.6 bits (145), Expect = 3e-10
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQI-------IASAPSERFKLHWPEPMDFALNDN 118
K+GFIG G + +A+ T L+ + + I IA+ +ERF P DN
Sbjct: 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF------PKVRIAKDN 55
Query: 119 HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVP 178
++ ++ VFLA++PQ + ++ L + +IS++ D L + + V
Sbjct: 56 QAVVDRSDVVFLAVRPQIAEEVLRAL-----RFRPGQTVISVIAATDRAALLEWIGHDV- 109
Query: 179 NPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMM 238
++R +P + KG+T + D L A+ G VE E
Sbjct: 110 ------KLVRAIPLPFVAERKGVTAIYPP---DPFVAALFDAL-----GTAVECDSEEEY 155
Query: 239 NSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
+ A A + A F +++ +QG+ R A
Sbjct: 156 DLL-AAASALMATYFGILETATGWLEEQGLKRQKA 189
>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
Length = 273
Score = 54.2 bits (131), Expect = 2e-08
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS--APSERFKLHWPEPMDFALNDNHRIIK 123
+GFIG GNM + + + +G P+Q+ + P++ + + P +I
Sbjct: 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS 61
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+++ +F+ +KP + +Q L L C++S+ + +E L+ + V
Sbjct: 62 QSDLIFICVKPLDIYPLLQKL---APHLTDEHCLVSITSPISVEQLETLVPCQV------ 112
Query: 184 PTIIRVMP---NTAMK------YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIP 234
R++P N A+ +G + S +++ + I E I +
Sbjct: 113 ---ARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFS-NISTPLVIEE--DITRVSS 166
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQ-GIPRDMALRIGAQLLKGSGQLVHKDLL 293
+ I G A+ ++ D AV++ I ++ A + +++L G G+L+ K L
Sbjct: 167 D--------IVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLY 218
Query: 294 RMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
+ P +++++C GG T GI LE+ V F +RT
Sbjct: 219 TL-------PT-LQEKVCVKGGITGEGIKVLEE-EVGDMFHRLFQRT 256
>gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed.
Length = 277
Score = 51.3 bits (123), Expect = 2e-07
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 24/208 (11%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-----RFKLHWPEPMDFALNDNH 119
K+GFIG G+MA +AT L+ T + P +II + S+ + +P
Sbjct: 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAE- 60
Query: 120 RIIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDLETLKKKLSVLVP 178
I + ++ F+ + P A+ L+ D L R ++S+ GV L+ L + L
Sbjct: 61 -IFTKCDHSFICVPPL----AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGL-- 113
Query: 179 NPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKE-SEHLNMAIKIMEQGGIVEIIPESM 237
+ R++P+ G G + + H +++ L + V I E
Sbjct: 114 ------QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHF---SHVMTIREEN 164
Query: 238 MNSFGAIAGSGCAYLFLVMDAMADGAVK 265
M+ + S ++ + + A+ AV+
Sbjct: 165 MDIASNLTSSSPGFIAAIFEEFAEAAVR 192
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 46.0 bits (110), Expect = 9e-07
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE--RFKLHWPEPMDFALNDNHRIIK 123
K+G IGAGNM +A+A L G + +IA++ + L + N ++
Sbjct: 1 KIGIIGAGNMGEALARGLAAAGHEV---VIANSRNPEKAAALAEELGVKATAVSNEEAVE 57
Query: 124 EAEYVFLAMKPQYLDSAIQGLVND 147
EA+ VFLA+KP+ + L +
Sbjct: 58 EADVVFLAVKPEDAPEVLAELADL 81
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 35.6 bits (83), Expect = 0.026
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGL 88
K+ FIG G M +A +L++ G
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGH 24
>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase protein; Reviewed.
Length = 477
Score = 32.8 bits (75), Expect = 0.22
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 58 EHHVPMWTK-VGFIGAGNMAQAVATSLIRTGLCI 90
+ ++P+ + V +GAG A+A+AT+L R G +
Sbjct: 325 QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAEL 358
>gnl|CDD|224459 COG1542, COG1542, Uncharacterized conserved protein [Function
unknown].
Length = 593
Score = 32.9 bits (75), Expect = 0.24
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 181 NDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMM 238
++ +P +K G+ I + V D+E ++ +E G VE +P +
Sbjct: 425 KYEIKVLIKIPRKYIKRGELIEDIQGHVGGDEEEVIK--SLGKLESKGFVEELPNKGV 480
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 32.1 bits (73), Expect = 0.46
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103
VGF+G +++ +A+SL+R+G + A I++ E+F
Sbjct: 6 VVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKF 43
Score = 28.7 bits (64), Expect = 6.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCI 90
++GFIG G M +A+ L+++ +
Sbjct: 326 RIGFIGLGAMGFGMASHLLKSNFSV 350
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of
6-phosphogluconate dehydrogenase. The NAD binding
domain of 6-phosphogluconate dehydrogenase adopts a
Rossmann fold.
Length = 163
Score = 30.1 bits (69), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
K+GFIG G M +A +L++ G
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAG 23
>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent
quinone reductase activity (QOR). Zeta-crystallin is a
eye lens protein with NADP-dependent quinone reductase
activity (QOR). It has been cited as a structural
component in mammalian eyes, but also has homology to
quinone reductases in unrelated species. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 29.9 bits (68), Expect = 2.0
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 194 AMKYGKGITGMCHDVHLDKES-EHLNMAIKIMEQGGIVEIIPESMMN---SFGAIAGSGC 249
A G+G+ DV ++ + +L + ++ GG + + + +
Sbjct: 207 AATAGQGV-----DVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEA 261
Query: 250 AYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK--DLLRMDHAAQAHPAVI 306
+ +++ A I A L G L ++ AA AH AV
Sbjct: 262 SIRGVLLYTATPEERAA-----AAEAIAAGL--ADGALRPVIAREYPLEEAAAAHEAVE 313
>gnl|CDD|224282 COG1363, FrvX, Cellulase M and related proteins [Carbohydrate
transport and metabolism].
Length = 355
Score = 29.9 bits (68), Expect = 2.1
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 251 YLFLVMDAMADGAVKQGIPRDMALRIGAQL-LKGSGQLVHKDLLRM--DHAAQAHPAVIK 307
+ + +D G D+ L G + +K + + H L + + A + + I
Sbjct: 229 DIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNN---IP 285
Query: 308 DQIC-SPGGSTIAGIHALEKAGVRT 331
Q+ SPGG T AG L GV T
Sbjct: 286 YQVDVSPGGGTDAGAAHLTGGGVPT 310
>gnl|CDD|225399 COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis
(capsule formation) [Cell envelope biogenesis, outer
membrane].
Length = 372
Score = 29.3 bits (66), Expect = 3.1
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 41 TGARPVRKSDMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100
+G + + G E + ++ +G V+ + LC + + S
Sbjct: 44 SGYVALAGAFAGR--INEPALRKTVRLPLLGD------VSNGARKADLCDIN-LETTITS 94
Query: 101 ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIIS 159
+ A + +K + D A QGL + S+ I S
Sbjct: 95 AGALTGGKLVLPQAEPASADALKNVGENVKDSANNHAFDLAAQGLKDTVAAFVSAG-INS 153
Query: 160 MLVGVDLETLKKKLSVLVPNP 180
G DL +KK ++
Sbjct: 154 AGAGDDLAAAEKKAALKRAGG 174
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase.
Length = 350
Score = 29.4 bits (66), Expect = 3.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 55 DSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLC 89
S TKV +G GN+ A+A +++ L
Sbjct: 28 SSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQDLA 62
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes. Members
of this subfamily are tetrameric NAD-dependent
2-hydroxycarboxylate dehydrogenases including LDHs,
L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and
LDH-like malate dehydrogenases (MDH). Dehydrogenases
catalyze the conversion of carbonyl compounds to
alcohols or amino acids. LDHs catalyze the last step of
glycolysis in which pyruvate is converted to L-lactate.
Vertebrate LDHs are non-allosteric, but some bacterial
LDHs are activated by an allosteric effector such as
fructose-1,6-bisphosphate. L-HicDH catalyzes the
conversion of a variety of 2-oxo carboxylic acids with
medium-sized aliphatic or aromatic side chains. MDH is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. The LDH-like
subfamily is part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of
alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and
NAD-binding potassium channel domains, among others.
Length = 300
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLC 89
+ IGAGN+ AVA +LI GL
Sbjct: 1 ITIIGAGNVGAAVAFALIAKGLA 23
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 29.2 bits (66), Expect = 3.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KV IGAG M + A L G+
Sbjct: 180 KVLVIGAGEMGELAAKHLAAKGVA 203
>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
also known as hydroxypyruvate reductase) and other
enzymes of the 2-hydroxyacid dehydrogenase family. GDH
catalyzes the reversible reaction of (R)-glycerate +
NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 306
Score = 28.6 bits (65), Expect = 4.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 62 PMWTKVGFIGAGNMAQAVATSLIRTG 87
+VG +G G + AVA L G
Sbjct: 130 AAERRVGVLGLGELGAAVARRLAALG 155
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production
and conversion].
Length = 313
Score = 28.7 bits (65), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQII 95
KV IGAGN+ ++A L+ GL +I
Sbjct: 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLI 31
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 28.7 bits (64), Expect = 4.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 12/51 (23%)
Query: 254 LVMDAMADGAVKQGIPRDMA-------LRIGAQLLK-----GSGQLVHKDL 292
L+M+ + G++K+ +PR+ L+ Q+ K GS Q VH+DL
Sbjct: 85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDL 135
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 28.4 bits (64), Expect = 4.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 12/54 (22%)
Query: 251 YLFLVMDAMADGAVKQ-------GIPRDMALRIGAQLLKG-----SGQLVHKDL 292
+L+LVM+ G++K + D LRI Q+L+G S ++H+DL
Sbjct: 65 HLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDL 118
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 28.8 bits (65), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
KV IGAG M + VA L G
Sbjct: 179 KKVLVIGAGEMGELVAKHLAEKG 201
>gnl|CDD|224996 COG2085, COG2085, Predicted dinucleotide-binding enzymes [General
function prediction only].
Length = 211
Score = 28.1 bits (63), Expect = 5.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL 105
+ IG GN+ A+A L + G I +S +
Sbjct: 2 MIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAA 40
>gnl|CDD|192243 pfam09287, CEP1-DNA_bind, CEP-1, DNA binding. Members of this
family of DNA-binding domains are found the
transcription factor CEP-1. They adopt a beta sandwich
structure, with nine strands in two beta-sheets, in a
Greek-key topology.
Length = 198
Score = 28.1 bits (62), Expect = 5.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 44 RPVRKSDMGMEDSVEHHVPMWTKVG 68
+ + SD S E + +W K+G
Sbjct: 12 KAAKSSDFAFAISSEDEIYLWAKMG 36
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and
some bacterial L-lactate dehydrogenases.
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes
the conversion of a variety of 2-oxo carboxylic acids
with medium-sized aliphatic or aromatic side chains.
This subfamily is composed of HicDHs and some bacterial
L-lactate dehydrogenases (LDH). LDHs catalyze the last
step of glycolysis in which pyruvate is converted to
L-lactate. Bacterial LDHs can be non-allosteric or may
be activated by an allosteric effector such as
fructose-1,6-bisphosphate. Members of this subfamily
with known structures such as the HicDH of
Lactobacillus confusus, the non-allosteric LDH of
Lactobacillus pentosus, and the allosteric LDH of
Bacillus stearothermophilus, show that they exist as
homotetramers. The HicDH-like subfamily is part of the
NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 306
Score = 27.8 bits (63), Expect = 7.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KV IGAG++ + A SL+ G+
Sbjct: 2 KVVIIGAGHVGSSFAYSLVNQGIA 25
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 27.2 bits (61), Expect = 9.0
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 38/154 (24%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG--LCI----PAQI---------IASAPSERFKLHWPEP 110
K+ +GAG+ A+A L R G + + I + P + P+
Sbjct: 1 KIAVLGAGSWGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKL----PDN 56
Query: 111 MDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV-GVDLETL 169
A D IK A+ + LA+ Q L ++ L L S I+ L G++ TL
Sbjct: 57 -LRATTDLEEAIKGADIIVLAVPSQALREVLKQLKG----LLSPGAILVSLTKGIEPGTL 111
Query: 170 K------------KKLSVLVPNPNDAPTIIRVMP 191
K ++VL P+ A + +P
Sbjct: 112 KLLSEIIEEELPINPIAVL-SGPSHAEEVALGLP 144
>gnl|CDD|235960 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 27.6 bits (62), Expect = 9.2
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTP 332
V+ D I S G + I L AG +P
Sbjct: 212 RTPVLVDDIVSTGRTLIEAARQLRAAGAASP 242
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 27.8 bits (63), Expect = 9.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
KV IGAG M + VA L G
Sbjct: 184 KVLVIGAGEMGELVAKHLAEKG 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,333,662
Number of extensions: 1686701
Number of successful extensions: 1754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1714
Number of HSP's successfully gapped: 53
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)