RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy316
(341 letters)
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 255 bits (653), Expect = 1e-83
Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 32/312 (10%)
Query: 36 ESEQHTGARPVRKSDMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII 95
H+ + ++ + VGFIGAG +A A+A G+ +I+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS---------MSVGFIGAGQLAFALAKGFTAAGVLAAHKIM 53
Query: 96 ASAPS-ERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNS 153
AS+P + + M N ++ ++ +FLA+KP + + + +
Sbjct: 54 ASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEI---GADIED 110
Query: 154 SRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKE 213
++S GV + +++KKLS P P +IR M NT + +G T H E
Sbjct: 111 RHIVVSCAAGVTISSIEKKLSAFRPAPR----VIRCMTNTPVVVREGATVYATGTHAQVE 166
Query: 214 SEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
+ +++ G + E ++++ ++GSG AY F +DA+ADG VK G+PR +A
Sbjct: 167 --DGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLA 224
Query: 274 LRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPF 333
+R+GAQ L G+ +++ ++ HP +KD + SPGG+TI +H LE G R+
Sbjct: 225 VRLGAQALLGAAKMLLH--------SEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLL 276
Query: 334 SSA----ARRTK 341
+A RT+
Sbjct: 277 INAVEASCIRTR 288
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 248 bits (636), Expect = 6e-82
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 29/272 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKE 124
K+GF+G G M A+A + + + PS + L+ ++ N + +
Sbjct: 6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLN-------YMSSNEELARH 58
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ + A+KP S + + ++ S+ +IS+ G+++ L++ + ++
Sbjct: 59 CDIIVCAVKPDIAGSVLNNI-KPYLS---SKLLISICGGLNIGKLEEMV------GSENK 108
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
I+ VMPNT G+G C + +++ I GI+ I E M+ AI
Sbjct: 109 -IVWVMPNTPCLVGEGSFIYCSNKNVNST--DKKYVNDIFNSCGIIHEIKEKDMDIATAI 165
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+G G AY++L ++++ D VK G+ R+++ + Q +KGS ++V K +
Sbjct: 166 SGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKK--------SDQPVQ 217
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD I SPGG T G+++LEK + +A
Sbjct: 218 QLKDNIVSPGGITAVGLYSLEKNSFKYTVMNA 249
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 247 bits (633), Expect = 1e-81
Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 21/267 (7%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRI 121
M ++GFIG GNM A+ +I + QII S + + E DN+ +
Sbjct: 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEV 60
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
K A+ + L++KP S I + K + + I+++ G +E+ +
Sbjct: 61 AKNADILILSIKPDLYASIINEI---KEIIKNDAIIVTIAAGKSIESTENAF------NK 111
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
++RVMPNT G+G++ +C + + ++ L + I G EI+ E +M+
Sbjct: 112 KVK-VVRVMPNTPALVGEGMSALCPNEMVTEK--DLEDVLNIFNSFGQTEIVSEKLMDVV 168
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
+++GS AY++++++AMAD AV G+PR+ A + AQ + GS ++V
Sbjct: 169 TSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMV--------LETGI 220
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAG 328
HP +KD +CSPGG+TI + LE+ G
Sbjct: 221 HPGELKDMVCSPGGTTIEAVATLEEKG 247
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 240 bits (616), Expect = 7e-79
Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 29/272 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKE 124
K+G IG G MA A+ L +T P ++I S S ER K + + +I +
Sbjct: 5 KIGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ V L +KPQ ++ ++ L + IISM G+ L+ L + D P
Sbjct: 61 VDLVILGIKPQLFETVLKPLHFKQP-------IISMAAGISLQRLATFV------GQDLP 107
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
++R+MPN + + T + + + +E + + G I E ++F A+
Sbjct: 108 -LLRIMPNMNAQILQSSTALTGNALVSQE--LQARVRDLTDSFGSTFDISEKDFDTFTAL 164
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
AGS AY++L ++A+A VK GIP+ AL I Q + S + + P
Sbjct: 165 AGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKT--------SSQSPH 216
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
D ICSPGG+TIAG+ LE+ G+ SSA
Sbjct: 217 DFIDAICSPGGTTIAGLMELERLGLTATVSSA 248
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 221 bits (567), Expect = 3e-71
Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 38/284 (13%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--------ERFKLHWPEPMDFALN 116
+ + FIG GNMA+ + LI G P +I + S E+ +H
Sbjct: 4 SNITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVH-------TTQ 55
Query: 117 DNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRC-IISMLVGVDLETLKKKLSV 175
DN + A+ V LA+KP + + L K L+ ++ +IS+ VGV ++K L
Sbjct: 56 DNRQGALNADVVVLAVKPHQIKMVCEEL---KDILSETKILVISLAVGVTTPLIEKWL-- 110
Query: 176 LVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIP 234
+ I+R MPNT G TG+ + +DK+ N+A IM G+V +
Sbjct: 111 ----GKASR-IVRAMPNTPSSVRAGATGLFANETVDKD--QKNLAESIMRAVGLVIWVSS 163
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLR 294
E + A++GSG AY+FL+M+A+ + A + G+ ++ A + Q + G+ ++ +
Sbjct: 164 EDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALE---- 219
Query: 295 MDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
+ ++ + SPGG+T I LE +R F A
Sbjct: 220 ----TEQSVVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALT 259
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 213 bits (544), Expect = 5e-68
Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 27/274 (9%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V F+G GNMA AVA L++ G +I + + + + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KPQ +++A + + + ++S+ G+ + TL + L
Sbjct: 59 DVLILAVKPQDMEAACKNIRT------NGALVLSVAAGLSVGTLSRYL------GGTRR- 105
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQ-GGIVEIIPESMMNSFGAI 244
I+RVMPNT K G G++GM + + + +A +IM+ G V + E M+ I
Sbjct: 106 IVRVMPNTPGKIGLGVSGMYAEAEVSET--DRRIADRIMKSVGLTVWLDDEEKMHGITGI 163
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY+F ++DA+ + A++QG A + KG+ L
Sbjct: 164 SGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALA--------EQTGEDFE 215
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
++ + S GG+T + A + V S
Sbjct: 216 KLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVC 249
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 52.5 bits (125), Expect = 5e-08
Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 26/248 (10%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIA--SAPSERFKLHWPEPMDFALNDNHRII 122
T + IGAGN+A +A +L R G I Q+ + + D +
Sbjct: 11 TPIVLIGAGNLATNLAKALYRKGFRI-VQVYSRTEESARELAQKVEAE---YTTDLAEVN 66
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS-VLVPNPN 181
A+ +++K +QG+V ++ + + + + V P
Sbjct: 67 PYAKLYIVSLKDSAFAELLQGIVE---GKREEALMVHTAGSIPMNVWEGHVPHYGVFYPM 123
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
+ + + + V S
Sbjct: 124 QTFS----KQREVDFKEIPFFIEASSTEDAAFLKAIASTL-----SNRVYDADSEQRKSL 174
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
A C + + A+ K +P D+ L + + + +L K AQ
Sbjct: 175 HLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKT-------AQT 227
Query: 302 HPAVIKDQ 309
PA+ D+
Sbjct: 228 GPAIRYDE 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 71/427 (16%), Positives = 126/427 (29%), Gaps = 175/427 (40%)
Query: 6 ELFA-YDETMRIIIKAAADPVKKSDTVTEDSESEQHTG-------ARPVRKSDMGMEDSV 57
+L+ Y + +IK +A+ + + T D+E G P D S+
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 58 EHHVPMWTKVGFIGA-----------------GNMAQAVATSLIRTGLCIPAQIIASAPS 100
P+ IG G + + + + + A IA S
Sbjct: 235 PISCPL------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 101 ERFKLHWPEPMDFALNDNHRIIKEA-EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIIS 159
W F +++A +F G+ RC
Sbjct: 289 ------WE---SF-----FVSVRKAITVLFF-----------IGV----------RC--- 310
Query: 160 MLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG-------ITGMCHDV---H 209
E PN + P+I+ +++ +G I+ + + +
Sbjct: 311 ------YEA--------YPNTSLPPSILE----DSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 210 LDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA--IAG---SGCAYLFLVMDAMADGAV 264
++K + HL G VEI S++N ++G S + A A +
Sbjct: 353 VNKTNSHL-------PAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 265 KQG-IP---RDMA-----LRIGA----QLLKGSGQLVHKDLLRMD---HAAQAHPAV--- 305
Q IP R + L + + LL + L++KDL++ + +A V
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 306 ----------------IKDQICS--------------------PGGSTIAGIHAL----- 324
I D I PGG+ +G+ L
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA--SGLGVLTHRNK 520
Query: 325 EKAGVRT 331
+ GVR
Sbjct: 521 DGTGVRV 527
Score = 41.6 bits (97), Expect = 4e-04
Identities = 50/334 (14%), Positives = 93/334 (27%), Gaps = 138/334 (41%)
Query: 39 QHTGARPVRKSDMGME------------DSVEHHVPMWTKVGFIGAGNMAQAVATSLIRT 86
Q G MGM+ + ++H GF S++
Sbjct: 1627 QEQG--------MGMDLYKTSKAAQDVWNRADNH--FKDTYGF------------SIL-- 1662
Query: 87 GLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK---------EAEYVFLAMKP--- 134
I+ + P +H+ + +N+ + + E +F +
Sbjct: 1663 ------DIVINNPVN-LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGV-DLETLKKKLSVLVPNPNDAPTIIRVMPNT 193
Y + +GL++ T + + L+ E LK K + P DA
Sbjct: 1716 SYTFRSEKGLLSA--TQFTQPAL--TLMEKAAFEDLKSKGLI----PADA-----TF--- 1759
Query: 194 AMKYGKGITGMCH------------DVHLDKESEHLNMAIKIMEQGGIV--EIIPESMMN 239
A G H DV + ES ++++ G+ +P
Sbjct: 1760 A--------G--HSLGEYAALASLADV-MSIES-----LVEVVFYRGMTMQVAVPR---- 1799
Query: 240 SFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAA 299
+ S M A+ G V ++ + ++ K +G LV
Sbjct: 1800 --DELGRSNYG-----MIAINPGRVAASFSQEALQYVVERVGKRTGWLV----------- 1841
Query: 300 QAHPAVIKDQIC---SPGGST-IAG-IHALEKAG 328
+I AG + AL+
Sbjct: 1842 ---------EIVNYNVENQQYVAAGDLRALDTVT 1866
Score = 38.1 bits (88), Expect = 0.005
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 22/118 (18%)
Query: 84 IRTGLCIPAQ--IIASAPSERFKLHWPEPMD-FALNDNHRIIKEAEYV--FLAMKPQYLD 138
+ L +P IAS E+F PEP + FA +D AE V FL ++
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGKFLGYVSSLVE 73
Query: 139 SAIQGLVND--KVTLNS-SRCIISMLVGVDLETLKKKLSVLVPNPNDAP-----TIIR 188
+ G + + L C L G D+ L KL ND +I+
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKL----LQENDTTLVKTKELIK 124
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 42.7 bits (100), Expect = 9e-05
Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 20/221 (9%)
Query: 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK 123
V +GA G M + + + + A IA +R + M L D I
Sbjct: 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ-----GMGIPLTDGDGWID 66
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISM---LVGVDLETLKKKLSVLVPNP 180
EA+ V LA+ ++ + +V + ++ + + + ++ + +P
Sbjct: 67 EADVVVLALPDNIIEKVAEDIVP---RVRPGTIVLILDAAAPYAGVMPERADITYFIGHP 123
Query: 181 NDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKES--EHLNMAIKIMEQ-----GGIVEII 233
P A G V + EH + I E +
Sbjct: 124 CHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT 183
Query: 234 PESMMN-SFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
E + G ++ ++ A+ + A + GI R A
Sbjct: 184 TEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAA 224
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 35.7 bits (82), Expect = 0.012
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
KVG +G+G+ A+++AT L+ +G
Sbjct: 29 PKVGILGSGDFARSLATRLVGSG 51
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 35.6 bits (81), Expect = 0.016
Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 24/247 (9%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRII 122
M + F+G G + + L + I I++ + L E +
Sbjct: 1 MSLVLNFVGTGTLTRFFLECL-KDRYEI-GYILSRSIDRARNLA--EVYGGKAATLEKHP 56
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPND 182
+ VF+ + D I+ + N ++ S + ++ + S+ +PN
Sbjct: 57 ELNGVVFVIVP----DRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASI---HPNF 109
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
+ + + + G+ G D + + I G +IP ++
Sbjct: 110 SFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEI-----SGKYFVIPSEKKKAYH 161
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
A + + G+ L L+KG + K + +
Sbjct: 162 LAAVIASNFPVALAYLSKRIYTLLGLDEPELLI--HTLMKGVADNIKKMRVE---CSLTG 216
Query: 303 PAVIKDQ 309
P D
Sbjct: 217 PVKRGDW 223
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 35.0 bits (80), Expect = 0.020
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
V G G+ +++ +++ G
Sbjct: 20 GVVCIFGTGDFGKSLGLKMLQCG 42
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 33.5 bits (76), Expect = 0.073
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCI------PAQIIASAPSERFKLHW-----PEPMDFA 114
K+ +G G + + +A +L G + P +A A + PE
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80
Query: 115 LNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVND 147
L + AE V A + +A+ +
Sbjct: 81 LAAFADVAAGAELVVNATEGASSIAALTAAGAE 113
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 32.5 bits (73), Expect = 0.11
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
++ G GNM QA+ + G
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAG 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.11
Identities = 19/162 (11%), Positives = 48/162 (29%), Gaps = 50/162 (30%)
Query: 89 CIPAQIIASAP------SERFK---LHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQY 136
+P +++ + P +E + W + D I E+ L + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 137 LDSAIQGLVND-KVTLNSSRCIISML--------VGVDLETLKKKLSVLVPNPNDAPTII 187
++ + ++S++ V V + L K S++ P +
Sbjct: 376 DRLSV--FPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKE----- 423
Query: 188 RVMPNTAMKYGKGITGMCHDVHLDKESEHLNMA---IKIMEQ 226
I ++L+ + + N I++
Sbjct: 424 -------STIS--I----PSIYLELKVKLENEYALHRSIVDH 452
Score = 30.6 bits (68), Expect = 1.0
Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 54/226 (23%)
Query: 101 ERFKLHWPEPMDFALNDNHRIIKEA---EYVFLAMKPQYLDSAIQGLVNDKVTL---NSS 154
++F ++ L N++ + E +M + L ND N S
Sbjct: 80 QKF-------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 155 RCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDK 212
R L++ L L P N + + + G G T + DV L
Sbjct: 133 R-------LQPYLKLRQALLELRPAKN-----VLIDGVL------GSGKTWVALDVCLSY 174
Query: 213 ESEHLNMAIKI----MEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGI 268
+ + M KI ++ E + E + I + + D ++ ++
Sbjct: 175 KVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS----DHSSNIKLRIHS 229
Query: 269 PRDMALRIGAQLLKGSGQLVHKD-LLRMDHAAQAHPAVIK--DQIC 311
+ LR +LLK +++ LL + + + + C
Sbjct: 230 IQA-ELR---RLLK---SKPYENCLLVLLNV--QNAKAWNAFNLSC 266
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 32.5 bits (74), Expect = 0.15
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 40 HTGARPVRKSDMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTG 87
H+ + ++ + + K+GFIG G A A+A+ L + G
Sbjct: 7 HSSGVDLGTENLYFQSNA-------MKLGFIGFGEAASAIASGLRQAG 47
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 32.6 bits (74), Expect = 0.17
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGL 88
M T + FIG G AQ++A L
Sbjct: 23 MMTTIAFIGFGEAAQSIAGGLGGRNA 48
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus}
SCOP: a.100.1.8 c.2.1.6
Length = 264
Score = 31.5 bits (71), Expect = 0.37
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
+VGFIG G +AQ +A+ L G
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRG 23
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 31.1 bits (71), Expect = 0.49
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
V IG G M +A L++ G
Sbjct: 10 FDVSVIGLGAMGTIMAQVLLKQG 32
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 31.0 bits (71), Expect = 0.49
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 62 PMWTKVGFIGAGNMAQAVATSLIRTG 87
M KVGFIG G M + ++ +L++ G
Sbjct: 3 AMTMKVGFIGLGIMGKPMSKNLLKAG 28
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two
domain enzyme, oxidoreductase; 2.30A {Eubacterium
barkeri}
Length = 301
Score = 31.0 bits (71), Expect = 0.55
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
K+GFIG G M + +A +L++ G
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEG 27
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2,
structural genomics; HET: TLA; 1.80A {Salmonella
typhimurium}
Length = 303
Score = 30.6 bits (70), Expect = 0.63
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 51 MGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTG 87
M + + VG +G G+M A S +R G
Sbjct: 1 MSLTGTD-------FHVGIVGLGSMGMGAARSCLRAG 30
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102
VG IG G + + +A L R G I A + E+
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK 38
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 30.2 bits (69), Expect = 0.83
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
T GF+G G M +A +L+R G
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAG 24
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 30.3 bits (69), Expect = 0.91
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
VGFIG GNM +A +L++ G
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHG 23
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom
joint center for structural genomics, JCSG, protein
structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A
{Thermotoga maritima}
Length = 335
Score = 30.1 bits (69), Expect = 0.97
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 51 MGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTG 87
MG + HH M + +GAG+ A L G
Sbjct: 1 MGSDKIHHHHHHMEMRFFVLGAGSWGTVFAQMLHENG 37
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 30.2 bits (67), Expect = 1.1
Identities = 14/102 (13%), Positives = 23/102 (22%), Gaps = 20/102 (19%)
Query: 63 MWTKVGFIGAGNMAQAVATSL--------------------IRTGLCIPAQIIASAPSER 102
M KV G GN A ++ L + +
Sbjct: 1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDG 60
Query: 103 FKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQGL 144
+ D I A+ V L + + Q +
Sbjct: 61 TQTEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAM 102
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 40 HTGARPVRKSDMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTG 87
H+ + ++ + P K+ F+G G+M +A L G
Sbjct: 7 HSSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAG 54
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG,
protein structure initiative, joint center for
structural G oxidoreductase; HET: NAD; 1.90A
{Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB:
1h2h_A*
Length = 253
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 51 MGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSL 83
MG + HH M V IG GN+ + +
Sbjct: 1 MGSDKIHHHHHHM--TVLIIGMGNIGKKLVELG 31
>3dfu_A Uncharacterized protein from 6-phosphogluconate
dehydrogenase-like family; putative rossmann-like
dehydrogenase, structural genomics; HET: MSE; 2.07A
{Corynebacterium glutamicum}
Length = 232
Score = 29.2 bits (65), Expect = 1.4
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPA 92
+VG G+ +A L G +
Sbjct: 8 RVGIFDDGSSTVNMAEKLDSVGHYVTV 34
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
++ FIG G+M +AT+L++ G
Sbjct: 4 KQIAFIGLGHMGAPMATNLLKAG 26
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 29.4 bits (67), Expect = 1.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
K GFIG G M A+A +L++ G
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAG 24
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 29.1 bits (64), Expect = 1.8
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 66 KVGFIGA-GNMAQAVATSLIRTG 87
+V +G GN+ + +A L G
Sbjct: 2 RVALLGGTGNLGKGLALRLATLG 24
>3qha_A Putative oxidoreductase; seattle structural genomics center for
infectious disease, S mycobacterium avium 104, rossmann
fold; 2.25A {Mycobacterium avium}
Length = 296
Score = 29.2 bits (66), Expect = 1.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
K+G+IG GNM +AT +
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWP 38
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 28.7 bits (65), Expect = 2.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
+VGF+G G M +A++ +L++ G
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNG 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.7
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 167 ETLKKKLSVLVP-NPNDAPTIIRVMPNTAMK 196
+ LKK + L + AP + A+K
Sbjct: 20 QALKKLQASLKLYADDSAPAL-------AIK 43
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 28.7 bits (65), Expect = 3.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
K+GF+G G M + ++L++ G
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMG 53
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.1 bits (60), Expect = 4.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTG 87
M + +GAG + Q +A L +
Sbjct: 4 MRWNICVVGAGKIGQMIAALLKTSS 28
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 6.8
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 34/100 (34%)
Query: 268 IPR--DMALRIGAQLLKG----SGQLVHKDLLRMDH--------AAQA------------ 301
IP+ + Q+ G + + + ++D +A
Sbjct: 976 IPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEM 1035
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKA-------G-VRTPF 333
+ V ++ + GS + G+ AL V+
Sbjct: 1036 YKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDI 1075
Score = 27.5 bits (61), Expect = 8.2
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 322 HALEKAGVRTPFSSA 336
+EK GVRT FS
Sbjct: 687 EGIEKMGVRT-FSQK 700
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 27.5 bits (62), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+G IG GN+ AVA LI G+
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVA 26
>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia P CO92,
YPO2528, csgid, isomerase, structural genomics; 2.28A
{Yersinia pestis}
Length = 458
Score = 27.3 bits (61), Expect = 7.9
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 67 VGFIGAGNMAQAVATSLIRTGL 88
G++ +VA +R+
Sbjct: 393 AGYLSLKRTEFSVA---LRSAR 411
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A
{Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB:
1wp4_A*
Length = 289
Score = 27.2 bits (61), Expect = 8.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
KV FIG G M +A L R
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRF 24
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.1 bits (61), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KVG +G G + A +L+ G C
Sbjct: 2 KVGVVGTGFVGSTAAFALVLRGSC 25
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 27.0 bits (60), Expect = 8.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 63 MWTKVGFIGAGNMAQAV 79
M K+ IG G++AQ
Sbjct: 1 MSLKIAMIGLGDIAQKA 17
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 26.9 bits (60), Expect = 9.8
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 2 KGFIELFAYDETMRIIIKAAADPVKKSDTVTED 34
K + + + + P K +D V ED
Sbjct: 19 KAIASMPLRERVKDVGMGKDGTPTKAADRVAED 51
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S
specificity, metallopeptidase M42, hydrolas; 2.70A
{Streptococcus pneumoniae}
Length = 355
Score = 26.9 bits (60), Expect = 9.9
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 252 LFLVMDAMADGAVKQGIPRDMALRIGAQL-LKGSGQLVHKDLLR-MDHAAQAHPAVIKDQ 309
+FL +D G V G + G + G L+ + + A+ IK Q
Sbjct: 232 VFLAVDCSPAGDVYGG---QGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAG--IKYQ 286
Query: 310 ICSPGGSTIAGIHALEKAGVRT 331
G T AG L+ GV +
Sbjct: 287 YYCGKGGTDAGAAHLKNGGVPS 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,267,085
Number of extensions: 332557
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 84
Length of query: 341
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,077,219
Effective search space: 1007073093
Effective search space used: 1007073093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)