RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy316
(341 letters)
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase
ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 111
Score = 77.3 bits (190), Expect = 2e-18
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLR 294
E M+ I+GSG AY+F ++DA+ + A++QG A + KG+ L +
Sbjct: 2 EEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQT--- 58
Query: 295 MDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFS----SAARRTK 341
++ + S GG+T + A + V S + RR++
Sbjct: 59 -----GEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQ 104
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase
ProC {Streptococcus pyogenes [TaxId: 1314]}
Length = 104
Score = 72.0 bits (176), Expect = 2e-16
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 238 MNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDH 297
++F A+AGS AY++L ++A+A VK GIP+ AL I Q + S
Sbjct: 3 FDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASA--------SNLK 54
Query: 298 AAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
+ P D ICSPGG+TIAG+ LE+ G+ SSA +T
Sbjct: 55 TSSQSPHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKT 97
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 69.2 bits (168), Expect = 6e-15
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V F+G GNMA AVA L++ G +I + + + + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KPQ +++A + + + ++S+ G+ + TL + L
Sbjct: 59 DVLILAVKPQDMEAACKNI------RTNGALVLSVAAGLSVGTLSRYL-------GGTRR 105
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233
I+RVMPNT K G G++GM + + + +A +IM+ G+ +
Sbjct: 106 IVRVMPNTPGKIGLGVSGMYAEAEVSE--TDRRIADRIMKSVGLTVWL 151
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 56.2 bits (134), Expect = 2e-10
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 19/170 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+G IG G MA A+ L +T + II+ + ER K + + +I +
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHEL---IISGSSLERSKEIAEQLALPYAMSHQDLIDQV 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ V L +KPQ ++ ++ L + + L L
Sbjct: 59 DLVILGIKPQLFETVLKPLHFKQP--------------IISMAAGISLQRLATFVGQDLP 104
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPE 235
++R+MPN + + T + + + + E + + G I E
Sbjct: 105 LLRIMPNMNAQILQSSTALTGNALVSQ--ELQARVRDLTDSFGSTFDISE 152
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 37.1 bits (85), Expect = 0.001
Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 12/148 (8%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCI---------PAQIIASAPSERFKLHWPEPMDFAL 115
K G+G A+A L + + + + F +
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF 67
Query: 116 NDN-HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVT--LNSSRCIISMLVGVDLETLKKK 172
+ + AE + + Q+L + + + ++ G++ TLK
Sbjct: 68 TSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFP 127
Query: 173 LSVLVPNPNDAPTIIRVMPNTAMKYGKG 200
++ + P+ A++ G
Sbjct: 128 AEIIGEFLPSPLLSVLAGPSFAIEVATG 155
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 36.8 bits (84), Expect = 0.001
Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 9/156 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALN---DNHRII 122
K+ +G G + Q T+L + G + + P L + F + ++ +
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPN 181
++ + + +K + A++ + TL + I+ + G+ +E L+ L+
Sbjct: 62 ATSDLLLVTLKAWQVSDAVK---SLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTT 118
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHL 217
R N + GIT + D + +L
Sbjct: 119 --THAARRDGNVIIHVANGITHIGPARQQDGDYSYL 152
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 35.2 bits (80), Expect = 0.005
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG G M + ++ +L++ G ++ S + + I ++
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGY----SLVVSDRNPEAIADVIAAGAETASTAKAIAEQC 57
Query: 126 EYVFLAMK-PQYLDSAIQGLVNDKVTLNSSRCIISM 160
+ + + ++ G +I M
Sbjct: 58 DVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDM 93
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 34.2 bits (77), Expect = 0.009
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAE 126
+ F+G G + + L + S + E + +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRY----EIGYILSRSIDRARNLAEVYGGKAATLEKHPELNG 57
Query: 127 YVFLAMKPQYL 137
VF+ + +Y+
Sbjct: 58 VVFVIVPDRYI 68
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 33.3 bits (75), Expect = 0.018
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
+VGFIG G +AQ +A+ L G+ +++ S + +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGV----EVVTSLEGRSPSTIERARTVGVTETSEEDVYSC 57
Query: 126 EYVFLAMKPQYLDSAIQ 142
V A+ P A +
Sbjct: 58 PVVISAVTPGVALGAAR 74
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 33.5 bits (75), Expect = 0.021
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG-----------LCIPAQIIASAPSERFKLHWPEPMDFA 114
V +GAG M A++ L+ G I I A R + F
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW 61
Query: 115 LNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174
+ ++ AE V L + + + ++ ++ + +
Sbjct: 62 PEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAV 121
Query: 175 VLVPNPNDAPTIIRVMPNTAM 195
+ + T+ P A
Sbjct: 122 WRLKHDLRERTVAITGPAIAR 142
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 156
Score = 31.4 bits (70), Expect = 0.072
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
KV FIG G M +A L R
Sbjct: 2 KVAFIGLGAMGYPMAGHLARRF 23
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 31.4 bits (70), Expect = 0.080
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTG 87
++ FIG G+M +AT+L++ G
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAG 24
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 30.7 bits (68), Expect = 0.16
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
VG +G G M +A ++ G
Sbjct: 3 DVGVVGLGVMGANLALNIAEKG 24
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 30.7 bits (68), Expect = 0.16
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCI------PAQIIA-----SAPSERFKLHWPEPMDFA 114
+G GN A A L G + +I + +E L D
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 115 LNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142
+D +K+A+ + + + + S
Sbjct: 63 TSDIGLAVKDADVILIVVPAIHHASIAA 90
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 29.6 bits (65), Expect = 0.33
Identities = 7/77 (9%), Positives = 19/77 (24%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
+ IG M Q + ++ G + A + + F + + + +
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63
Query: 126 EYVFLAMKPQYLDSAIQ 142
+
Sbjct: 64 LKKPRRIILLVKAGQAV 80
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 29.2 bits (65), Expect = 0.42
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 11/135 (8%)
Query: 58 EHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALND 117
E K+ +G G + A A S++ L ++ +
Sbjct: 14 EEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQ 73
Query: 118 NHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS--- 174
+I+ + +Y + + S ++ V V + + +
Sbjct: 74 TPKIVADKDY----SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP 129
Query: 175 ----VLVPNPNDAPT 185
++V NP D T
Sbjct: 130 DCIIIVVSNPVDILT 144
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 29.4 bits (64), Expect = 0.45
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+G +G G + ++A L R G +I + + E + +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRG----HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQT 57
Query: 126 EYVFLAMKPQY 136
+ P
Sbjct: 58 AKIIFLCTPIQ 68
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 28.4 bits (63), Expect = 0.65
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLC 89
TK+ IGAG + +A + + G+
Sbjct: 2 TKLAVIGAGAVGSTLAFAAAQRGIA 26
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 28.8 bits (63), Expect = 0.68
Identities = 19/177 (10%), Positives = 41/177 (23%), Gaps = 7/177 (3%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V +G+G + + L +G+ + +A E K A
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGIKV---TVACRTLESAKKLSAGVQHSTPISLDVNDDAA 60
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+A I + I V + + L DA
Sbjct: 61 LDAEVAKHDLV----ISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 116
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
+ + V + + + I + + + + +G
Sbjct: 117 TVMNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYG 173
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 28.1 bits (62), Expect = 0.84
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC--IPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK 123
+V IGAG + + +L+ G+ I + + + + FA
Sbjct: 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRC-IISMLVGVDLETLKKKLSVLVPNPND 182
+ + A A Q ++ L I +V + + + L ++ NP D
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 183 APT 185
T
Sbjct: 128 ILT 130
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 196
Score = 27.8 bits (61), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 44 RPVRKSDMGMEDSVEHHVPMWTKVG 68
+ + SDM S EH +WTK+G
Sbjct: 12 KVAKSSDMAFAISSEHEKYLWTKMG 36
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 27.3 bits (60), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLC 89
K+ +G G++ A A S++ GL
Sbjct: 20 CKITVVGVGDVGMACAISILLKGLA 44
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 27.4 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+G IG GN+ AVA LI G+
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVA 26
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 27.3 bits (60), Expect = 1.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KV IGAG + + A ++
Sbjct: 3 KVAIIGAGFVGASAAFTMALRQTA 26
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 26.9 bits (59), Expect = 2.5
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KV +G G + + A ++ + G+
Sbjct: 7 KVVLVGDGAVGSSYAFAMAQQGIA 30
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 26.6 bits (58), Expect = 3.0
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALND-------N 118
KV IG+GN+ + ++R + + + L + M
Sbjct: 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIK 65
Query: 119 HRIIKEAEYVFLAM-------KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171
+ ++VF A L A G+ + L + + V+LE
Sbjct: 66 LPEFADIDFVFDATSASAHVQNEALLRQAKPGIRL--IDLTPAAIGPYCVPVVNLEEHLG 123
Query: 172 KLSV-LVPNPNDAPTIIRVMPNTAMKYGKGI 201
KL+V +V + + TA + + +
Sbjct: 124 KLNVNMVTYAGNLDIMTSAALATAERMAQSM 154
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 26.7 bits (58), Expect = 3.1
Identities = 5/38 (13%), Positives = 7/38 (18%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103
V +G G L +I
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL 46
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 26.2 bits (57), Expect = 3.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGL 88
K+ +G+G + +AT +++ L
Sbjct: 4 AKIVLVGSGMIGGVMATLIVQKNL 27
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 26.2 bits (57), Expect = 3.8
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+ IGAGN+ A L L
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLA 25
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 26.2 bits (57), Expect = 3.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+G +G G + + A +L+ G
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFA 25
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 25.8 bits (56), Expect = 4.6
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+ IGAG + A L L
Sbjct: 3 KISIIGAGFVGSTTAHWLAAKELG 26
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 26.0 bits (56), Expect = 4.9
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
+ +GAG M +A G I + I E+ + + ++ +
Sbjct: 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKM 65
Query: 126 EYVFLAMKPQY 136
V ++P
Sbjct: 66 AEVLNGIRPTL 76
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.2 bits (57), Expect = 5.5
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 29/124 (23%)
Query: 195 MKYGKGITGMCHDVHLDKESEHLNMAIKIM----EQGGIVEIIPE-SMMNS--------- 240
++ G G G + +++AIK++ E+ E++ E +M+
Sbjct: 15 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRL 74
Query: 241 FGAIAGSGCAYLFLVMDAMADGAV-------KQGIPRDMALRIGAQLLKGSGQL-----V 288
G L LVM+ G + ++ IP + Q+ G L V
Sbjct: 75 IGVCQAEA---LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFV 131
Query: 289 HKDL 292
H+DL
Sbjct: 132 HRDL 135
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 25.8 bits (56), Expect = 5.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
K+GF+GAG + A + +
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDV 25
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 25.8 bits (56), Expect = 5.9
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 294 RMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAG 328
+ + +I D I + GGS A +E+
Sbjct: 115 QKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLE 149
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 26.0 bits (56), Expect = 6.1
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNH 119
+V +G GN+ ++V + + I + + K + D + +
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADD 58
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 25.7 bits (55), Expect = 6.8
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 66 KVGFIGAGNMAQAVATSLIRTG 87
++G +G ++A+ V+ ++
Sbjct: 3 RIGVMGCADIARKVSRAIHLAP 24
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 154
Score = 25.4 bits (55), Expect = 7.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLC 89
KV IG+G + + L
Sbjct: 9 KVAMIGSGMIGGTMGYLCALRELA 32
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 25.7 bits (55), Expect = 7.2
Identities = 9/71 (12%), Positives = 20/71 (28%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
++G +G G +AQ ++ Q S + + +
Sbjct: 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASC 62
Query: 126 EYVFLAMKPQY 136
+ VF+
Sbjct: 63 DAVFVHSSTAS 73
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 8.2
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 18/123 (14%)
Query: 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYL----- 252
G G G + + +A+KI++ + + ++ + Y+
Sbjct: 16 GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIG 75
Query: 253 -------FLVMDAMADGAV------KQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAA 299
LVM+ G + + + + + Q+ G L + + D AA
Sbjct: 76 ICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAA 135
Query: 300 QAH 302
+
Sbjct: 136 RNV 138
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 25.1 bits (54), Expect = 8.8
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V +GAG+ A ATS +R G ++ + E + +
Sbjct: 47 AVIVLGAGDTAFDCATSALRCG-ARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105
Query: 126 EYVFLAMKPQYLDSAIQGLVNDK 148
+ + + D+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDE 128
>d1ny4a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 71
Score = 23.8 bits (52), Expect = 8.8
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 5 IELFAYDETMRIIIKAAADPVKKSDTVT-EDSESEQHTGARPVRK 48
+ + + R+I + PV+ D + ++E E AR ++
Sbjct: 29 VRILEGRDKGRVIRRNVRGPVRVGDILILRETERE----AREIKS 69
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.3 bits (55), Expect = 8.9
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTI 186
Y+ + P + + ++ + ++SR + + + V VP ND +I
Sbjct: 78 YLAAEVDPDFEEECLEFQPSVDPDQDASRSRLR-----NAQEKMVYSLVSVPEGNDISSI 132
Query: 187 IRVMPNTAMKYGKGITG-----MCH----------DVHLDKESE 215
+ P T + + H ++ +DKE E
Sbjct: 133 FELDPTTLRGGDSLVPRNSYVRLRHLCTNTWVHSTNIPIDKEEE 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,230,728
Number of extensions: 57189
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 59
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)