BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3161
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0LXW0|PDXJ_GRAFK Pyridoxine 5'-phosphate synthase OS=Gramella forsetii (strain
           KT0803) GN=pdxJ PE=3 SV=1
          Length = 237

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 53  STSLNPI-NSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALANWNNVPNTNKLK 111
           +  L P+ N+ F+ E   I   ++ +LE    Q  +V D+ +AI + + W+ V + + LK
Sbjct: 56  ARELKPVLNTEFNIEGKPIQQFIDLVLEVKPAQVTLVPDAENAITSDSGWDTVKHRDYLK 115

Query: 112 SIRPNIK--HWNTSTQDRRIKEVILTRMRIGHTRLTHNHLFTKSDPPICQCGAPLSVRHL 169
            +    K     TS     +K++I      G  R+    L+T+S     + G   +V+  
Sbjct: 116 EVIAEFKANGIRTSIFVDPVKKMIEGAAETGSDRI---ELYTESFAVDFEKGNSNAVKPY 172

Query: 170 LSCPRHGH 177
             C +  H
Sbjct: 173 AECAKIAH 180


>sp|Q3II35|DPO4_PSEHT DNA polymerase IV OS=Pseudoalteromonas haloplanktis (strain TAC
           125) GN=dinB PE=3 SV=1
          Length = 351

 Score = 32.7 bits (73), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 30  CYTDGSKSPDATGCAFSIGDMVRSTSLNPINSIFSAELIAI-FLCLEAILES-PSDQFLI 87
            Y D + S    G A  I   +R+   N      SA +  I F+   A  E+ P+ QF++
Sbjct: 104 AYLDVTHSEQCKGSATLIAQQIRADIYNATGLTASAGIAPIKFIAKIASDENKPNGQFVV 163

Query: 88  VSDSRSAIAALANWNNVPNTNKLKSIRPNIKHWNTSTQDRRIKEVILTRMRIGH 141
           + D   A  A      +P   K+   + N+K   T  QD R K V   +  +G+
Sbjct: 164 LPDQVDAFLAQLPLGKIPGVGKVTLEKLNLKGLYTG-QDVRKKGVNWMQQHVGN 216


>sp|Q9DE14|ATR_XENLA Serine/threonine-protein kinase atr OS=Xenopus laevis GN=atr PE=1
           SV=2
          Length = 2654

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 90  DSRSAIAALANWNNVPNTNKLKSIRPNIKHWNTST--QDRRIKEVILTRMRIGHT 142
           DSR+ I +L N    P+ +   +   NIKH       +D  +KE++++RM+  +T
Sbjct: 816 DSRTVIESLLNLMEDPDKDVRTAFSGNIKHLLACADCEDGYLKEIVVSRMKKAYT 870


>sp|A5FJ95|PDXJ_FLAJ1 Pyridoxine 5'-phosphate synthase OS=Flavobacterium johnsoniae
           (strain ATCC 17061 / DSM 2064 / UW101) GN=pdxJ PE=3 SV=1
          Length = 237

 Score = 30.8 bits (68), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  LEAILESPSDQFLIVSDSRSAIAALANWNNVPNTNKLKSI 113
           ++ +LE   DQ  +V D+  AI + A W+ + N   LK +
Sbjct: 78  IDLVLECKPDQVTLVPDAIGAITSSAGWDTIKNQEYLKEV 117


>sp|P31224|ACRB_ECOLI Acriflavine resistance protein B OS=Escherichia coli (strain K12)
           GN=acrB PE=1 SV=1
          Length = 1049

 Score = 30.4 bits (67), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 34  GSKSPDATGCAFSIGDMVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIV 88
            SK P   G  ++        S N   S+++  LI +FLCL A+ ES S  F ++
Sbjct: 848 ASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVM 902


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,006,543
Number of Sequences: 539616
Number of extensions: 2939935
Number of successful extensions: 6133
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6129
Number of HSP's gapped (non-prelim): 10
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)