Query psy3161
Match_columns 211
No_of_seqs 160 out of 580
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:57:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.5 2.1E-14 7E-19 112.5 9.0 103 25-127 5-136 (154)
2 3h08_A RNH (ribonuclease H); R 99.4 2.4E-13 8.2E-18 105.4 5.6 73 26-100 3-80 (146)
3 2kq2_A Ribonuclease H-related 99.4 6.3E-13 2.1E-17 103.6 7.4 105 25-130 4-125 (147)
4 3qio_A GAG-POL polyprotein; RN 99.4 1E-12 3.5E-17 102.9 8.5 73 24-101 9-84 (150)
5 1jl1_A Ribonuclease HI; RNAse 99.4 6.4E-13 2.2E-17 104.3 7.0 100 27-129 4-130 (155)
6 3hst_B Protein RV2228C/MT2287; 99.3 1.1E-12 3.8E-17 100.2 6.5 96 27-122 3-117 (141)
7 2e4l_A Ribonuclease HI, RNAse 99.3 1.3E-12 4.3E-17 103.0 6.7 101 26-129 5-132 (158)
8 3u3g_D Ribonuclease H, RNAse H 99.3 1.7E-12 5.8E-17 98.7 6.4 96 27-122 3-121 (140)
9 1ril_A Ribonuclease H; hydrola 99.3 1.2E-12 4E-17 104.1 5.2 73 26-100 7-84 (166)
10 2ehg_A Ribonuclease HI; RNAse 99.2 1.3E-11 4.3E-16 95.8 7.2 97 27-123 1-119 (149)
11 3p1g_A Xenotropic murine leuke 99.2 3.1E-11 1.1E-15 96.0 8.4 96 27-125 23-134 (165)
12 4htu_A Ribonuclease H, RNAse H 99.2 2E-11 6.9E-16 93.8 5.5 77 25-102 3-84 (134)
13 1zbf_A Ribonuclease H-related 99.2 3.6E-11 1.2E-15 93.4 5.9 77 25-102 9-90 (142)
14 2zd1_A Reverse transcriptase/r 99.1 5.4E-11 1.8E-15 110.6 7.9 98 25-127 437-545 (557)
15 1mu2_A HIV-2 RT; HIV-2 reverse 99.1 1E-10 3.4E-15 108.7 8.8 101 25-130 434-545 (555)
16 2lsn_A Reverse transcriptase; 99.1 1.6E-10 5.6E-15 91.8 7.5 74 26-100 6-93 (165)
17 1rw3_A POL polyprotein; RNA an 93.9 0.0088 3E-07 53.7 -0.3 71 27-101 346-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 76.2 4.5 0.00016 35.7 6.1 92 11-103 298-408 (428)
19 3alr_A Nanos protein; zinc-fin 60.6 4 0.00014 29.2 1.8 27 156-182 72-100 (106)
20 2fr5_A Cytidine deaminase; tet 59.6 17 0.00058 27.4 5.4 53 38-91 35-91 (146)
21 2nx8_A TRNA-specific adenosine 55.8 17 0.0006 28.2 5.0 52 38-89 35-90 (179)
22 2a8n_A Cytidine and deoxycytid 53.7 16 0.00055 27.1 4.4 52 38-89 23-78 (144)
23 1wkq_A Guanine deaminase; doma 53.2 20 0.00069 27.5 4.9 76 5-89 7-86 (164)
24 2b3j_A TRNA adenosine deaminas 52.7 30 0.001 26.1 5.9 52 38-89 26-81 (159)
25 1wwr_A TRNA adenosine deaminas 52.2 22 0.00075 27.4 5.0 52 38-89 42-97 (171)
26 1z3a_A TRNA-specific adenosine 44.6 27 0.00091 26.8 4.4 50 40-89 30-83 (168)
27 1uwz_A Cytidine deaminase; CDD 42.8 42 0.0014 24.8 5.1 51 40-91 25-79 (136)
28 2d30_A Cytidine deaminase; pur 40.8 44 0.0015 24.9 5.0 52 40-92 34-89 (141)
29 3mpz_A Cytidine deaminase; ssg 40.4 34 0.0012 26.0 4.3 51 40-91 47-101 (150)
30 2zqe_A MUTS2 protein; alpha/be 38.7 56 0.0019 21.9 4.9 36 10-47 45-80 (83)
31 2z3g_A Blasticidin-S deaminase 37.7 53 0.0018 24.0 5.0 53 39-92 27-81 (130)
32 3dh1_A TRNA-specific adenosine 36.0 56 0.0019 25.5 5.1 41 38-78 45-89 (189)
33 2zd1_A Reverse transcriptase/r 35.8 62 0.0021 29.2 6.1 92 11-103 300-410 (557)
34 3r2n_A Cytidine deaminase; str 35.1 45 0.0015 24.8 4.2 51 40-91 32-86 (138)
35 3dmo_A Cytidine deaminase; str 31.7 47 0.0016 24.8 3.8 76 8-92 10-90 (138)
36 2g84_A Cytidine and deoxycytid 31.5 1.2E+02 0.004 23.7 6.4 41 38-78 47-93 (197)
37 2cs3_A Protein C14ORF4, MY039 31.3 27 0.00091 23.9 2.1 26 152-177 12-38 (93)
38 2yha_A Post-transcriptional ge 30.1 81 0.0028 27.3 5.7 39 22-79 233-271 (388)
39 2yhb_A QDE-2, post-transcripti 29.2 94 0.0032 27.4 6.0 38 23-79 234-271 (437)
40 1r5t_A Cytidine deaminase; zin 28.3 84 0.0029 23.3 4.7 54 38-91 31-88 (142)
41 1vq2_A DCMP deaminase, deoxycy 27.9 96 0.0033 23.9 5.3 13 64-76 104-116 (193)
42 2hxv_A Diaminohydroxyphosphori 26.9 68 0.0023 27.5 4.5 41 34-74 30-71 (360)
43 1a6b_B Momulv, zinc finger pro 26.3 43 0.0015 19.5 2.2 22 152-176 7-30 (40)
44 3qd7_X Uncharacterized protein 25.3 71 0.0024 23.6 3.8 37 9-47 93-129 (137)
45 2hvw_A Deoxycytidylate deamina 21.3 1.9E+02 0.0065 22.3 5.8 50 38-89 60-128 (184)
46 2ysa_A Retinoblastoma-binding 20.9 53 0.0018 20.5 1.9 20 154-176 6-27 (55)
47 1u6p_A GAG polyprotein; MLV, A 20.3 59 0.002 20.4 2.1 22 153-177 21-44 (56)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.53 E-value=2.1e-14 Score=112.55 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCceEEEecCCCCCCc-----eeEEEEeCC---eeeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHH
Q psy3161 25 ANHTICYTDGSKSPDA-----TGCAFSIGD---MVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIA 96 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~~-----~G~ai~~~~---~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~ 96 (211)
.+.+.||||||+..++ +|+|++..+ ......+...++++.||+.|++.||+.+.+.+..++.|+|||+.+++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4579999999998653 788888642 12344555678999999999999999998877789999999999999
Q ss_pred HHhcCC---------C---Cc-----hhhhhhhcCC----CCcccCCCcccc
Q psy3161 97 ALANWN---------N---VP-----NTNKLKSIRP----NIKHWNTSTQDR 127 (211)
Q Consensus 97 al~~~~---------~---~~-----~~~~I~~i~p----~~~W~~~~~~l~ 127 (211)
.|.++. . .+ +.+.|.++.. .|.|+|.|.+..
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~~ 136 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFI 136 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCH
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCCH
Confidence 998742 1 11 2344444433 259999986443
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.40 E-value=2.4e-13 Score=105.38 Aligned_cols=73 Identities=27% Similarity=0.355 Sum_probs=57.3
Q ss_pred CceEEEecCCCCCC--ceeEEEEe--CCeeeeee-cCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhc
Q psy3161 26 NHTICYTDGSKSPD--ATGCAFSI--GDMVRSTS-LNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALAN 100 (211)
Q Consensus 26 ~~~~IyTDgS~~~~--~~G~ai~~--~~~~~~~~-l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~ 100 (211)
+.+.||||||+..+ ..|+|++. ++....+. ..+.++++.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHS
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHH
Confidence 56899999998865 37777663 33222221 124689999999999999999876 5899999999999999987
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.39 E-value=6.3e-13 Score=103.59 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=73.1
Q ss_pred CCceEEEecCCCCCCceeEEEEe--CCee--eee-ec--CC--CCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHH
Q psy3161 25 ANHTICYTDGSKSPDATGCAFSI--GDMV--RST-SL--NP--INSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAI 95 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~~~G~ai~~--~~~~--~~~-~l--~~--~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal 95 (211)
++.+.||||||+.++.+|+|++. .+.. ... .. +. .++++.||+.|++.||+++.+.+. ++.|+|||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 46789999999999778888664 3332 222 22 22 368999999999999998876555 899999999877
Q ss_pred HHHhcCCC--Cc----hhhhhhhcCC--CCcccCCCccccchh
Q psy3161 96 AALANWNN--VP----NTNKLKSIRP--NIKHWNTSTQDRRIK 130 (211)
Q Consensus 96 ~al~~~~~--~~----~~~~I~~i~p--~~~W~~~~~~l~R~~ 130 (211)
.-+.+... ++ +.+.++++.. .|.|+|.|.+...++
T Consensus 83 ~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne 125 (147)
T 2kq2_A 83 FWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFND 125 (147)
T ss_dssp HHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHH
T ss_pred HHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchH
Confidence 76665433 22 2344455533 369999986544443
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.38 E-value=1e-12 Score=102.91 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=58.0
Q ss_pred cCCceEEEecCCCCCC--ceeEEEEeC-CeeeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhc
Q psy3161 24 YANHTICYTDGSKSPD--ATGCAFSIG-DMVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALAN 100 (211)
Q Consensus 24 ~~~~~~IyTDgS~~~~--~~G~ai~~~-~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~ 100 (211)
..+.+.||||||+..+ ..|+|++.. +......+ +.++++.||+.|++.||+.+ ..++.|+|||+++++.|.+
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 4568999999998765 367776653 22223333 57899999999999999985 4789999999999999988
Q ss_pred C
Q psy3161 101 W 101 (211)
Q Consensus 101 ~ 101 (211)
|
T Consensus 84 w 84 (150)
T 3qio_A 84 W 84 (150)
T ss_dssp H
T ss_pred H
Confidence 6
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.38 E-value=6.4e-13 Score=104.29 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=70.4
Q ss_pred ceEEEecCCCCCC--ceeEEEEe--CCeee--eeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhc
Q psy3161 27 HTICYTDGSKSPD--ATGCAFSI--GDMVR--STSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALAN 100 (211)
Q Consensus 27 ~~~IyTDgS~~~~--~~G~ai~~--~~~~~--~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~ 100 (211)
.+.||||||+.++ ..|+|++. .+... ...+ +.++++.||+.|++.||+.+.+ ..++.|+|||+.+++.|.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5899999999865 37778664 33222 2222 4678999999999999999876 3789999999999999987
Q ss_pred C---------CC---Cc-----hhhhhhhcCCC----CcccCCCccccch
Q psy3161 101 W---------NN---VP-----NTNKLKSIRPN----IKHWNTSTQDRRI 129 (211)
Q Consensus 101 ~---------~~---~~-----~~~~I~~i~p~----~~W~~~~~~l~R~ 129 (211)
| .. .+ +.+.|.++... |.|+|.|.+...+
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~N 130 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPEN 130 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHH
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHH
Confidence 2 11 12 33444444332 5999998654433
No 6
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.35 E-value=1.1e-12 Score=100.24 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=69.3
Q ss_pred ceEEEecCCCCCC--ceeEEEEe--CC---eeeee-ecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHH
Q psy3161 27 HTICYTDGSKSPD--ATGCAFSI--GD---MVRST-SLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAAL 98 (211)
Q Consensus 27 ~~~IyTDgS~~~~--~~G~ai~~--~~---~~~~~-~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al 98 (211)
.+.||||||+..+ ..|+|++. .+ ....+ ...+.++++.||+.|++.||+++.+.+..++.|+|||+.+++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 4899999999865 47777653 32 11122 12247899999999999999999987788999999999999999
Q ss_pred hcCC-C-Cc-h---hhhhhhcCC---C--CcccCC
Q psy3161 99 ANWN-N-VP-N---TNKLKSIRP---N--IKHWNT 122 (211)
Q Consensus 99 ~~~~-~-~~-~---~~~I~~i~p---~--~~W~~~ 122 (211)
.+.. . ++ + ...|+++.. . |.|+|.
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~ 117 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR 117 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 8854 3 43 2 334444432 2 488875
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.34 E-value=1.3e-12 Score=102.97 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=70.1
Q ss_pred CceEEEecCCCCCC--ceeEEEEe--CCeee--eeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHh
Q psy3161 26 NHTICYTDGSKSPD--ATGCAFSI--GDMVR--STSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALA 99 (211)
Q Consensus 26 ~~~~IyTDgS~~~~--~~G~ai~~--~~~~~--~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~ 99 (211)
..+.||||||+.++ ..|+|++. ++... ...+ +..+++.||+.|++.||+.+.+ ..++.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 35899999999855 46788664 33222 2222 4688999999999999999865 389999999999999998
Q ss_pred cC--------C-C---Cc-----hhhhhhhcCC----CCcccCCCccccch
Q psy3161 100 NW--------N-N---VP-----NTNKLKSIRP----NIKHWNTSTQDRRI 129 (211)
Q Consensus 100 ~~--------~-~---~~-----~~~~I~~i~p----~~~W~~~~~~l~R~ 129 (211)
+| . . .+ +.+.|.++.. .|.|+|.|.+...+
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~N 132 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAEN 132 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHH
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhH
Confidence 82 1 1 12 2334444432 25899998654433
No 8
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.33 E-value=1.7e-12 Score=98.71 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=68.3
Q ss_pred ceEEEecCCCCCC--ceeEEEEeC--C--eeeee-ecCCCCchhHHHHHHHHHHHHHHHcCCCC----cEEEEeCcHHHH
Q psy3161 27 HTICYTDGSKSPD--ATGCAFSIG--D--MVRST-SLNPINSIFSAELIAIFLCLEAILESPSD----QFLIVSDSRSAI 95 (211)
Q Consensus 27 ~~~IyTDgS~~~~--~~G~ai~~~--~--~~~~~-~l~~~~si~~AEl~AI~~AL~~~~~~~~~----~i~I~SDS~sal 95 (211)
.+.||||||+..+ ..|+|++.. + ....+ ...+.++++.||+.|++.||+++.+.+.. ++.|+|||+.++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 5899999999865 477886642 2 21121 11235799999999999999999876666 999999999999
Q ss_pred HHHhcCCC--Cc-h---hhhhhhc----CCC--CcccCC
Q psy3161 96 AALANWNN--VP-N---TNKLKSI----RPN--IKHWNT 122 (211)
Q Consensus 96 ~al~~~~~--~~-~---~~~I~~i----~p~--~~W~~~ 122 (211)
+.+.++.. ++ + ...|.++ ++. |.|+|.
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~ 121 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR 121 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc
Confidence 99998654 33 2 3344443 233 478774
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.32 E-value=1.2e-12 Score=104.08 Aligned_cols=73 Identities=21% Similarity=0.137 Sum_probs=56.4
Q ss_pred CceEEEecCCCCCC--ceeEEEEeC--Ceeeeee-cCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhc
Q psy3161 26 NHTICYTDGSKSPD--ATGCAFSIG--DMVRSTS-LNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALAN 100 (211)
Q Consensus 26 ~~~~IyTDgS~~~~--~~G~ai~~~--~~~~~~~-l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~ 100 (211)
..+.||||||+..+ ..|+|++.. +....+. ....++++.||+.|++.||+.+... .++.|+|||+++++.|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 46899999999865 377887753 2221111 1246889999999999999988653 589999999999999988
No 10
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.24 E-value=1.3e-11 Score=95.75 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=69.0
Q ss_pred ceEEEecCCCC-C--CceeE-EEEe--CCe-eeeee--cC---CCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHH
Q psy3161 27 HTICYTDGSKS-P--DATGC-AFSI--GDM-VRSTS--LN---PINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSA 94 (211)
Q Consensus 27 ~~~IyTDgS~~-~--~~~G~-ai~~--~~~-~~~~~--l~---~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sa 94 (211)
|+.||||||+. . ++.|+ |++. .+. ...+. +. +..+++.||+.|++.||+.+...+..++.|+|||+.+
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV 80 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHH
Confidence 57899999987 3 35675 7543 222 22222 22 3789999999999999999988777899999999999
Q ss_pred HHHHhcCCC--Cc----hhhhhhhcC----CCCcccCCC
Q psy3161 95 IAALANWNN--VP----NTNKLKSIR----PNIKHWNTS 123 (211)
Q Consensus 95 l~al~~~~~--~~----~~~~I~~i~----p~~~W~~~~ 123 (211)
++.+.++.. ++ +.+.|+++. -.|.|+|.+
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~ 119 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPRE 119 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGG
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 999998754 22 333444332 235888875
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.21 E-value=3.1e-11 Score=95.95 Aligned_cols=96 Identities=23% Similarity=0.198 Sum_probs=66.7
Q ss_pred ceEEEecCCCCC--CceeEEEE--eCCeee-eeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhcC
Q psy3161 27 HTICYTDGSKSP--DATGCAFS--IGDMVR-STSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALANW 101 (211)
Q Consensus 27 ~~~IyTDgS~~~--~~~G~ai~--~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~~ 101 (211)
.+.||||||+.. +..|+|++ .++... ...++..++++.||+.|++.||+++ ...++.|+|||+++++.|...
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 489999999984 44666643 333322 2245678899999999999999998 268999999999999999432
Q ss_pred CC-Cch--hhhhhhc----C--C--CCcccCCCcc
Q psy3161 102 NN-VPN--TNKLKSI----R--P--NIKHWNTSTQ 125 (211)
Q Consensus 102 ~~-~~~--~~~I~~i----~--p--~~~W~~~~~~ 125 (211)
.. .++ ...++++ . . .|.|++.|.+
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQK 134 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCC
T ss_pred cCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCC
Confidence 22 332 1223322 1 1 2699999865
No 12
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.18 E-value=2e-11 Score=93.83 Aligned_cols=77 Identities=18% Similarity=0.073 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCC--ceeEE-EEeC-Ce-eeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHh
Q psy3161 25 ANHTICYTDGSKSPD--ATGCA-FSIG-DM-VRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALA 99 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~--~~G~a-i~~~-~~-~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~ 99 (211)
++...||||||+..+ ..|+| |+.. +. .....-...++++.||+.|++.||+.+.+.+.. +.|+|||+.+++.|.
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 567889999999866 37774 4432 21 111111237899999999999999999875444 899999999999998
Q ss_pred cCC
Q psy3161 100 NWN 102 (211)
Q Consensus 100 ~~~ 102 (211)
++.
T Consensus 82 ~~~ 84 (134)
T 4htu_A 82 DKK 84 (134)
T ss_dssp HTC
T ss_pred cCC
Confidence 754
No 13
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.15 E-value=3.6e-11 Score=93.41 Aligned_cols=77 Identities=19% Similarity=0.033 Sum_probs=60.1
Q ss_pred CCceEEEecCCCCCC--ceeEEEEeC--Ceeeeeec-CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHh
Q psy3161 25 ANHTICYTDGSKSPD--ATGCAFSIG--DMVRSTSL-NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALA 99 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~--~~G~ai~~~--~~~~~~~l-~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~ 99 (211)
...+.||||||+..+ ..|+|++.. +....... ...+|++.||+.|++.||+.+.+... ++.|+|||+.+++.+.
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 457899999999865 478887753 22221211 13678999999999999999998666 8999999999999998
Q ss_pred cCC
Q psy3161 100 NWN 102 (211)
Q Consensus 100 ~~~ 102 (211)
+..
T Consensus 88 ~~~ 90 (142)
T 1zbf_A 88 DKK 90 (142)
T ss_dssp HTC
T ss_pred cCC
Confidence 866
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.15 E-value=5.4e-11 Score=110.58 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCceEEEecCCCCCCc--eeEEEEeC-CeeeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhcC
Q psy3161 25 ANHTICYTDGSKSPDA--TGCAFSIG-DMVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALANW 101 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~~--~G~ai~~~-~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~~ 101 (211)
.+.+.||||||+..++ .|+|++.. +....+.+ ..+|++.||+.|++.||+.+ ..++.|+|||+.+++.|.++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 4568999999987553 67776643 32223333 57899999999999999998 57899999999999999998
Q ss_pred CC---Cchhhhhh-hc--CC--CCcccCCCcccc
Q psy3161 102 NN---VPNTNKLK-SI--RP--NIKHWNTSTQDR 127 (211)
Q Consensus 102 ~~---~~~~~~I~-~i--~p--~~~W~~~~~~l~ 127 (211)
.. .++.+.+. .+ .. .|.|++.|.+..
T Consensus 512 ~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~ 545 (557)
T 2zd1_A 512 PDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIG 545 (557)
T ss_dssp CSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCT
T ss_pred CccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCCh
Confidence 76 23444333 22 11 258999886443
No 15
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.13 E-value=1e-10 Score=108.72 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=72.8
Q ss_pred CCceEEEecCCCCCCc--eeEEEEeC-CeeeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcHHHHHHHhcC
Q psy3161 25 ANHTICYTDGSKSPDA--TGCAFSIG-DMVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSRSAIAALANW 101 (211)
Q Consensus 25 ~~~~~IyTDgS~~~~~--~G~ai~~~-~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~sal~al~~~ 101 (211)
.+.+.||||||+..++ .|+|++.. +......+ ..++++.||+.|++.||+. ...++.|+|||+.+++.|.+|
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4569999999998653 67776642 22222332 4788999999999999998 467999999999999999998
Q ss_pred CC---Cchhhhhhhc---CC--CCcccCCCccccchh
Q psy3161 102 NN---VPNTNKLKSI---RP--NIKHWNTSTQDRRIK 130 (211)
Q Consensus 102 ~~---~~~~~~I~~i---~p--~~~W~~~~~~l~R~~ 130 (211)
.. .++.+.+.++ .. .|.|++.|.+..-++
T Consensus 509 ~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne 545 (555)
T 1mu2_A 509 PTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQ 545 (555)
T ss_dssp CSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHH
T ss_pred cccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHH
Confidence 75 3454444333 11 259999986554443
No 16
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.10 E-value=1.6e-10 Score=91.77 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=55.1
Q ss_pred CceEEEecCCCCCC--c-----eeEEEEeC--C----eeeeeec-CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 26 NHTICYTDGSKSPD--A-----TGCAFSIG--D----MVRSTSL-NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 26 ~~~~IyTDgS~~~~--~-----~G~ai~~~--~----~~~~~~l-~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
..+.||||||+..+ + .|+|++.. + ....+.. ....+...||+.|+..||+.+.+. ..++.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeCh
Confidence 35789999999855 2 68887741 1 1223333 356677889999999999887764 3579999999
Q ss_pred HHHHHHHhc
Q psy3161 92 RSAIAALAN 100 (211)
Q Consensus 92 ~sal~al~~ 100 (211)
+++++.|..
T Consensus 85 ~Yvi~~it~ 93 (165)
T 2lsn_A 85 FYVAESANK 93 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhhhh
Confidence 999999975
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=93.95 E-value=0.0088 Score=53.68 Aligned_cols=71 Identities=10% Similarity=-0.093 Sum_probs=46.3
Q ss_pred ceEEEecCCCCCCceeEEEEeCC-----ee---eeeec---CCCCchhHHHHHHHHHHHHHHHcC-CCCcEEEEeCcHHH
Q psy3161 27 HTICYTDGSKSPDATGCAFSIGD-----MV---RSTSL---NPINSIFSAELIAIFLCLEAILES-PSDQFLIVSDSRSA 94 (211)
Q Consensus 27 ~~~IyTDgS~~~~~~G~ai~~~~-----~~---~~~~l---~~~~si~~AEl~AI~~AL~~~~~~-~~~~i~I~SDS~sa 94 (211)
.+.+|||+|.. +.|+ ++... .. .+-++ ....++++.|++||..|++..... ...++.|+||+. +
T Consensus 346 ~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~ 421 (455)
T 1rw3_A 346 PFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-V 421 (455)
T ss_dssp TTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-T
T ss_pred cEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-H
Confidence 46899999853 3332 33211 11 11122 246788999999999999987653 467899999996 5
Q ss_pred HHHHhcC
Q psy3161 95 IAALANW 101 (211)
Q Consensus 95 l~al~~~ 101 (211)
+.-+.+.
T Consensus 422 ~~~l~~~ 428 (455)
T 1rw3_A 422 EALVKQP 428 (455)
T ss_dssp TTTSSST
T ss_pred HHHhCCC
Confidence 5555443
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=76.25 E-value=4.5 Score=35.73 Aligned_cols=92 Identities=4% Similarity=-0.126 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhh----------cCCceEEEecCCCCCCceeEEEEeCC-e---eeeeecCCCCchhHHHHHH-HHHHHH
Q psy3161 11 VFQQKFSEVINTK----------YANHTICYTDGSKSPDATGCAFSIGD-M---VRSTSLNPINSIFSAELIA-IFLCLE 75 (211)
Q Consensus 11 ~~~~~~~~~~~~~----------~~~~~~IyTDgS~~~~~~G~ai~~~~-~---~~~~~l~~~~si~~AEl~A-I~~AL~ 75 (211)
+-++.|.++++.- ....+.+|||+|... ..|+.+..++ . +..+.-......++-|++| |+.||+
T Consensus 298 ~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~ 376 (428)
T 2zd1_B 298 EAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQG-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIT 376 (428)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEETT-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCCC-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhh
Confidence 4566666665431 122479999999532 2233233322 1 1222223455566777777 999998
Q ss_pred HHH----cCCCCcEEEEeCcHHHHHHHhcCCC
Q psy3161 76 AIL----ESPSDQFLIVSDSRSAIAALANWNN 103 (211)
Q Consensus 76 ~~~----~~~~~~i~I~SDS~sal~al~~~~~ 103 (211)
.-. ...+..++++||.+.-..-...|..
T Consensus 377 ~~r~yl~G~~~~~~i~~td~~~~~~~~~~~q~ 408 (428)
T 2zd1_B 377 TESIVIWGKTPKFKLPIQKETWETWWTEYWQA 408 (428)
T ss_dssp HHHHHHHSSCCEEEESSCHHHHHHHHHHHCCC
T ss_pred ccceEEECCCCcEECCccHHHHHHHHHhcccc
Confidence 743 2235667889999876655555554
No 19
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=60.61 E-value=4 Score=29.22 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCcc-CCCccccceec-cccCchHhhhhc
Q psy3161 156 PICQ-CGAPLSVRHLL-SCPRHGHIRASL 182 (211)
Q Consensus 156 p~C~-Cg~~~t~~Hil-~C~~~~~~R~~~ 182 (211)
-.|+ ||+..+-.|-. .||........+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 5799 99999999999 999988665443
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=59.58 E-value=17 Score=27.43 Aligned_cols=53 Identities=21% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCceeEEEEeCC--eeeeeec--CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 38 PDATGCAFSIGD--MVRSTSL--NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 38 ~~~~G~ai~~~~--~~~~~~l--~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
+-.+|++++..+ .....-. ..+..--.||..||..|... -......+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 347999988532 2222222 12222346999999999975 22335678888874
No 21
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=55.81 E-value=17 Score=28.21 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=32.4
Q ss_pred CCceeEEEEeCCeeeeeecCC----CCchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 38 PDATGCAFSIGDMVRSTSLNP----INSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
+..+|+.+|..+......... ....--||..||..|.+..........++|+
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 346899988765554433221 1113459999999998876544445566665
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=53.71 E-value=16 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCceeEEEEeCCeeeeeecCCC----CchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 38 PDATGCAFSIGDMVRSTSLNPI----NSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l~~~----~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
+-.+|+.++..+.......... ...--||..||..|.+..........++|+
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 3468998887555443332211 113449999999998865443344556664
No 23
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=53.16 E-value=20 Score=27.46 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCceEEEecCCCCCCceeEEEEeCCeeeeeecCC----CCchhHHHHHHHHHHHHHHHcC
Q psy3161 5 SDIAPVVFQQKFSEVINTKYANHTICYTDGSKSPDATGCAFSIGDMVRSTSLNP----INSIFSAELIAIFLCLEAILES 80 (211)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~IyTDgS~~~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~~ 80 (211)
..+|...+=+...++-+.... .|+ +..+|+.+|..+......... ....--||..||..|.+.....
T Consensus 7 ~~~~~~~~M~~Al~~A~~a~~-------~g~--~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~ 77 (164)
T 1wkq_A 7 HAMNHETFLKRAVTLACEGVN-------AGI--GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAY 77 (164)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH-------TTS--SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS
T ss_pred ccCCHHHHHHHHHHHHHHHHh-------cCC--CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCC
Confidence 345666665555555444111 222 456899988765544333221 1123449999999998865444
Q ss_pred CCCcEEEEe
Q psy3161 81 PSDQFLIVS 89 (211)
Q Consensus 81 ~~~~i~I~S 89 (211)
.....++|+
T Consensus 78 ~l~g~tlYv 86 (164)
T 1wkq_A 78 QLDDCILYT 86 (164)
T ss_dssp SCTTEEEEE
T ss_pred CcCceEEEE
Confidence 445566665
No 24
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=52.72 E-value=30 Score=26.13 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=32.3
Q ss_pred CCceeEEEEeCCeeeeeecCCC----CchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 38 PDATGCAFSIGDMVRSTSLNPI----NSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l~~~----~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
+-.+|+.++..+.......... ...--||..||..|.+..........++|+
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 3468998887555443332211 223459999999998875544455666765
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=52.23 E-value=22 Score=27.43 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=32.1
Q ss_pred CCceeEEEEeCCeeeeeecCCC----CchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 38 PDATGCAFSIGDMVRSTSLNPI----NSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l~~~----~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
+..+|+.++..+.......... ...--||..||..|.+..........++|+
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 3468999887555443332211 113449999999998875444455666765
No 26
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=44.60 E-value=27 Score=26.77 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=30.3
Q ss_pred ceeEEEEeCCeeeeeecCC----CCchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 40 ATGCAFSIGDMVRSTSLNP----INSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 40 ~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
.+|+.++..+......... ....--||..||..|.+..........++|+
T Consensus 30 pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 6899988765544333221 1122459999999998876443334455554
No 27
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=42.80 E-value=42 Score=24.76 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=32.1
Q ss_pred ceeEEEEeCC--eeeeeec--CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 40 ATGCAFSIGD--MVRSTSL--NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 40 ~~G~ai~~~~--~~~~~~l--~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
.+|++++..+ .....-. ..+.....||..||..|... -......+++++|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 6899988632 2222222 12333456999999999986 33345678888874
No 28
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=40.76 E-value=44 Score=24.90 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=31.8
Q ss_pred ceeEEEEeCCeeeeee--c--CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcH
Q psy3161 40 ATGCAFSIGDMVRSTS--L--NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSR 92 (211)
Q Consensus 40 ~~G~ai~~~~~~~~~~--l--~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~ 92 (211)
.+|++++..+-....+ . ..+..--.||..||..|+..- ......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 6888888533222222 2 122234569999999998752 22356788888853
No 29
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=40.38 E-value=34 Score=25.98 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=30.2
Q ss_pred ceeEEEEeCCeeeeeecC----CCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 40 ATGCAFSIGDMVRSTSLN----PINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 40 ~~G~ai~~~~~~~~~~l~----~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
++|+|+...+-..-.+.+ .+..-..||..||..|+..-. .....+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGG-GRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcCC-CceEEEEEEcCC
Confidence 689998864432222221 122234699999999987522 234567777664
No 30
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=38.72 E-value=56 Score=21.86 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEecCCCCCCceeEEEEe
Q psy3161 10 VVFQQKFSEVINTKYANHTICYTDGSKSPDATGCAFSI 47 (211)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~IyTDgS~~~~~~G~ai~~ 47 (211)
..+|+...+.+.+ .+.+.-|.+|....+|.|+-+|.
T Consensus 45 GvLr~~V~~~L~~--~~~V~~f~~a~~~~GG~Gat~V~ 80 (83)
T 2zqe_A 45 GALRQAIREALRR--DKRVESFADAPPGEGGHGVTVVA 80 (83)
T ss_dssp SHHHHHHHHHHHH--CTTEEEEEECCTTTTGGGEEEEE
T ss_pred hHHHHHHHHHHhc--CCceeEEEEcCcccCCCEEEEEE
Confidence 3789999999998 68899999999999999988763
No 31
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=37.74 E-value=53 Score=23.96 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred CceeEEEEeCC--eeeeeecCCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCcH
Q psy3161 39 DATGCAFSIGD--MVRSTSLNPINSIFSAELIAIFLCLEAILESPSDQFLIVSDSR 92 (211)
Q Consensus 39 ~~~G~ai~~~~--~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS~ 92 (211)
-.+|++++..+ .....-...+.....||..||..|... -......+++++|..
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~~ 81 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNEN 81 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETTT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECCC
Confidence 46899988533 222222222333456999999999874 222355677888743
No 32
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=36.04 E-value=56 Score=25.53 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=27.1
Q ss_pred CCceeEEEEeCCeeeeeecCC----CCchhHHHHHHHHHHHHHHH
Q psy3161 38 PDATGCAFSIGDMVRSTSLNP----INSIFSAELIAIFLCLEAIL 78 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~ 78 (211)
+..+|+.+|..+......... ....--||..||..|.+.+.
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 346899888766555444321 23344599999999987643
No 33
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=35.82 E-value=62 Score=29.25 Aligned_cols=92 Identities=4% Similarity=-0.068 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhh----------cCCceEEEecCCCCCCceeEEEEeCCe----eeeeecCCCCchhHHHHHH-HHHHHH
Q psy3161 11 VFQQKFSEVINTK----------YANHTICYTDGSKSPDATGCAFSIGDM----VRSTSLNPINSIFSAELIA-IFLCLE 75 (211)
Q Consensus 11 ~~~~~~~~~~~~~----------~~~~~~IyTDgS~~~~~~G~ai~~~~~----~~~~~l~~~~si~~AEl~A-I~~AL~ 75 (211)
+-++.|.++++.- ....+.+|||+|.. +..|+.+...+. ...|.-......++-|++| +..||+
T Consensus 300 ~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~-g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~ 378 (557)
T 2zd1_A 300 EAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIT 378 (557)
T ss_dssp HHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEET-TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCC-CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhh
Confidence 4566677776541 12246899999854 123444433221 1223324556677889999 999987
Q ss_pred HHHc---CCCCcEEE-EeCcHHHHHHHhcCCC
Q psy3161 76 AILE---SPSDQFLI-VSDSRSAIAALANWNN 103 (211)
Q Consensus 76 ~~~~---~~~~~i~I-~SDS~sal~al~~~~~ 103 (211)
...- .....+.+ ++|++....-...|..
T Consensus 379 ~~~~~l~g~~p~~~vp~~~~~~~~~~~~~~~~ 410 (557)
T 2zd1_A 379 TESIVIWGKTPKFKLPIQKETWETWWTEYWQA 410 (557)
T ss_dssp HHHHHHHSSCCEEEESBCHHHHHHHHHHCSSC
T ss_pred hhheEEeCCCCCEECCCcHHHHHHHhhhchhh
Confidence 7332 12235666 7998866655555443
No 34
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=35.09 E-value=45 Score=24.81 Aligned_cols=51 Identities=18% Similarity=-0.009 Sum_probs=29.3
Q ss_pred ceeEEEEeCCeeeeeecC----CCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 40 ATGCAFSIGDMVRSTSLN----PINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 40 ~~G~ai~~~~~~~~~~l~----~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
.+|++++..+-......+ .+..-..||..||..|+..-. .....+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G~-~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGG-GRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcCC-CceEEEEEEcCC
Confidence 688888864322222221 122234699999999987532 234456677663
No 35
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=31.75 E-value=47 Score=24.77 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHhhcCCceEEEecCCCCCCceeEEEEeCCeeeeeecCC----CCchhHHHHHHHHHHHHHHHc-CCC
Q psy3161 8 APVVFQQKFSEVINTKYANHTICYTDGSKSPDATGCAFSIGDMVRSTSLNP----INSIFSAELIAIFLCLEAILE-SPS 82 (211)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~IyTDgS~~~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~-~~~ 82 (211)
..+.+.....+..++.|... +.=.+|+|+...+-..-.+.+- +..-..||..||..|+..-.. ...
T Consensus 10 ~~~~L~~~A~~a~~~AyaPY---------S~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i 80 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPY---------SNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEF 80 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTT---------TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCE
T ss_pred cHHHHHHHHHHHHHhccCCc---------CCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccE
Confidence 34445555555555533221 1226899988654333222222 222346999999999864221 024
Q ss_pred CcEEEEeCcH
Q psy3161 83 DQFLIVSDSR 92 (211)
Q Consensus 83 ~~i~I~SDS~ 92 (211)
..+.|.+|+.
T Consensus 81 ~aiavv~~~~ 90 (138)
T 3dmo_A 81 AAIAVVGETH 90 (138)
T ss_dssp EEEEEEESCS
T ss_pred EEEEEEcCCC
Confidence 5677888863
No 36
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=31.51 E-value=1.2e+02 Score=23.68 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=25.8
Q ss_pred CCceeEEEEe-C-CeeeeeecC----CCCchhHHHHHHHHHHHHHHH
Q psy3161 38 PDATGCAFSI-G-DMVRSTSLN----PINSIFSAELIAIFLCLEAIL 78 (211)
Q Consensus 38 ~~~~G~ai~~-~-~~~~~~~l~----~~~si~~AEl~AI~~AL~~~~ 78 (211)
+..+|+.+|. . +........ .....--||..||..|-+...
T Consensus 47 ~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~ 93 (197)
T 2g84_A 47 GGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLD 93 (197)
T ss_dssp CCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcC
Confidence 3467888887 3 444333322 233445599999999887653
No 37
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.27 E-value=27 Score=23.95 Aligned_cols=26 Identities=31% Similarity=0.695 Sum_probs=20.1
Q ss_pred CCCCCCcc-CCCccccceeccccCchH
Q psy3161 152 KSDPPICQ-CGAPLSVRHLLSCPRHGH 177 (211)
Q Consensus 152 ~~~~p~C~-Cg~~~t~~Hil~C~~~~~ 177 (211)
....-.|. |..+.--.|++.||.-..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~ 38 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPS 38 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSS
T ss_pred CCCeeEeecchhhhccCceeeCCCccC
Confidence 34456788 999888899999997543
No 38
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=30.05 E-value=81 Score=27.34 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=29.9
Q ss_pred hhcCCceEEEecCCCCCCceeEEEEeCCeeeeeecCCCCchhHHHHHHHHHHHHHHHc
Q psy3161 22 TKYANHTICYTDGSKSPDATGCAFSIGDMVRSTSLNPINSIFSAELIAIFLCLEAILE 79 (211)
Q Consensus 22 ~~~~~~~~IyTDgS~~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 79 (211)
..++..|.||=|| +.+| ....|..-|+.||..|+..+..
T Consensus 233 ~~~P~rIiiyRDG-VseG------------------Qf~~V~~~El~~i~~a~~~~~~ 271 (388)
T 2yha_A 233 RSLPENILIFRDG-VSEG------------------QFQMVIKDELPLVRAACKLVYP 271 (388)
T ss_dssp TCCCSEEEEEEES-CCGG------------------GHHHHHHHTHHHHHHHHHHHSC
T ss_pred CCCCceEEEEecC-cChh------------------HHHHHHHHHHHHHHHHHHHhhc
Confidence 3467889999998 3332 3567888999999999998753
No 39
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=29.17 E-value=94 Score=27.43 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=29.4
Q ss_pred hcCCceEEEecCCCCCCceeEEEEeCCeeeeeecCCCCchhHHHHHHHHHHHHHHHc
Q psy3161 23 KYANHTICYTDGSKSPDATGCAFSIGDMVRSTSLNPINSIFSAELIAIFLCLEAILE 79 (211)
Q Consensus 23 ~~~~~~~IyTDgS~~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 79 (211)
.++..|.||=||- .++ ....|..-|+.||.+|++.+..
T Consensus 234 ~~P~rIiiyRDGV-seG------------------qf~~V~~~El~~i~~a~~~~~~ 271 (437)
T 2yhb_A 234 SLPENILIFRDGV-SEG------------------QFQMVIKDELPLVRAACKLVYP 271 (437)
T ss_dssp CCCSEEEEEEESC-CTT------------------THHHHHHHTHHHHHHHHHHHSC
T ss_pred CCCceEEEEeCCc-chH------------------HHHHHHHHHHHHHHHHHHHhhc
Confidence 3677899999983 332 3567888999999999998743
No 40
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=28.27 E-value=84 Score=23.25 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCceeEEEEeCC--eeeeeec--CCCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeCc
Q psy3161 38 PDATGCAFSIGD--MVRSTSL--NPINSIFSAELIAIFLCLEAILESPSDQFLIVSDS 91 (211)
Q Consensus 38 ~~~~G~ai~~~~--~~~~~~l--~~~~si~~AEl~AI~~AL~~~~~~~~~~i~I~SDS 91 (211)
.-.+|++++..+ .....-. ..+..-..||..||..|...-.......+.|++|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 347899988533 2222222 12333456999999999875332116678899875
No 41
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=27.87 E-value=96 Score=23.93 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy3161 64 SAELIAIFLCLEA 76 (211)
Q Consensus 64 ~AEl~AI~~AL~~ 76 (211)
-||..||..|-+.
T Consensus 104 HAE~~AI~~a~~~ 116 (193)
T 1vq2_A 104 HAELNAILFAAEN 116 (193)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 4999999998764
No 42
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=26.90 E-value=68 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCCCC-ceeEEEEeCCeeeeeecCCCCchhHHHHHHHHHHH
Q psy3161 34 GSKSPD-ATGCAFSIGDMVRSTSLNPINSIFSAELIAIFLCL 74 (211)
Q Consensus 34 gS~~~~-~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL 74 (211)
++..++ .+|+.++..+.............--||..||..|.
T Consensus 30 ~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 30 GRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESAR 71 (360)
T ss_dssp TTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHH
T ss_pred cccCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHH
Confidence 344444 58998887665544443333334459999999985
No 43
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=26.32 E-value=43 Score=19.51 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=16.9
Q ss_pred CCCCCCcc-CCCccccceec-cccCch
Q psy3161 152 KSDPPICQ-CGAPLSVRHLL-SCPRHG 176 (211)
Q Consensus 152 ~~~~p~C~-Cg~~~t~~Hil-~C~~~~ 176 (211)
..+...|- ||.. .|+- +||.-.
T Consensus 7 ~~~~~~C~~Cgk~---GH~ardCP~~~ 30 (40)
T 1a6b_B 7 QLDRDQCAYCKEK---GHWAKDCPKKP 30 (40)
T ss_dssp SCCSSSCSSSCCT---TCCTTSCSSSC
T ss_pred CCCCCeeeECCCC---CcchhhCcCCc
Confidence 34567899 9976 7999 999843
No 44
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=25.35 E-value=71 Score=23.60 Aligned_cols=37 Identities=5% Similarity=0.171 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhcCCceEEEecCCCCCCceeEEEEe
Q psy3161 9 PVVFQQKFSEVINTKYANHTICYTDGSKSPDATGCAFSI 47 (211)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~IyTDgS~~~~~~G~ai~~ 47 (211)
+..+|+.+.+.+.. .+.+.-|.+|....+|.|+-+|.
T Consensus 93 ~~vLk~~V~~wL~~--~~~V~~f~~a~~~~GG~Gat~V~ 129 (137)
T 3qd7_X 93 ANIVRSYVARWLTE--FDDVQAYCTALPHHGGSGACYVA 129 (137)
T ss_dssp HHHHHHHHHHHHHT--STTEEEEEECCGGGTGGGEEEEE
T ss_pred hHHHHHHHHHHHhc--CCceeEEeecCccCCCCEEEEEE
Confidence 45899999999998 67999999999999999998774
No 45
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=21.26 E-value=1.9e+02 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCceeEEEEeCCeeeeeec---CCC----------------CchhHHHHHHHHHHHHHHHcCCCCcEEEEe
Q psy3161 38 PDATGCAFSIGDMVRSTSL---NPI----------------NSIFSAELIAIFLCLEAILESPSDQFLIVS 89 (211)
Q Consensus 38 ~~~~G~ai~~~~~~~~~~l---~~~----------------~si~~AEl~AI~~AL~~~~~~~~~~i~I~S 89 (211)
+-.+|+.++..+....... +.. ...--||..||..|.+.- ......++|+
T Consensus 60 ~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g--~~l~g~tlYv 128 (184)
T 2hvw_A 60 RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG--ISANNTEIYV 128 (184)
T ss_dssp TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT--CCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC--CCceeEEEEE
Confidence 3469999887554443222 111 113459999999987642 2245566665
No 46
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=53 Score=20.50 Aligned_cols=20 Identities=40% Similarity=1.079 Sum_probs=14.9
Q ss_pred CCCCcc-CCCccccceec-cccCch
Q psy3161 154 DPPICQ-CGAPLSVRHLL-SCPRHG 176 (211)
Q Consensus 154 ~~p~C~-Cg~~~t~~Hil-~C~~~~ 176 (211)
..-.|- ||.. -|+. +||.-.
T Consensus 6 ~~~~C~kCGk~---GH~~k~Cp~~~ 27 (55)
T 2ysa_A 6 SGYTCFRCGKP---GHYIKNCPTNG 27 (55)
T ss_dssp SSCCCTTTCCT---TSCGGGCSGGG
T ss_pred CCCccccCCCc---CcccccCCCCC
Confidence 345798 9976 5999 999543
No 47
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=20.31 E-value=59 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=17.0
Q ss_pred CCCCCcc-CCCccccceec-cccCchH
Q psy3161 153 SDPPICQ-CGAPLSVRHLL-SCPRHGH 177 (211)
Q Consensus 153 ~~~p~C~-Cg~~~t~~Hil-~C~~~~~ 177 (211)
.+...|- ||.. .|+- +||....
T Consensus 21 ~~~~~C~~Cge~---GH~ardCp~~~~ 44 (56)
T 1u6p_A 21 LDRDQCAYCKEK---GHWAKDCPKKPR 44 (56)
T ss_dssp CCTTBCSSSCCB---SSCGGGCTTCCC
T ss_pred CCCCcceeCCCC---CcccccCcCCcc
Confidence 4456799 9975 7999 9999653
Done!