RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3161
         (211 letters)



>d2fj8a1 g.3.13.1 (A:64-122) Bowman-Birk inhibitor, BBI {Barley
           (Hordeum vulgare) [TaxId: 4513]}
          Length = 59

 Score = 24.8 bits (54), Expect = 2.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 151 TKSDPPICQC 160
           T+S+PP C+C
Sbjct: 12  TRSNPPTCRC 21


>d1hcna_ g.17.1.4 (A:) Glycoprotein hormones alpha chain
           (Gonadotropin A, Follitropin alpha) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 85

 Score = 25.2 bits (55), Expect = 2.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 143 RLTHNHLFTKSDPPICQC 160
            L  N  F++   PI QC
Sbjct: 7   TLQENPFFSQPGAPILQC 24


>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase
          subunit beta, DsrB {Archaeoglobus fulgidus [TaxId:
          2234]}
          Length = 119

 Score = 25.7 bits (57), Expect = 2.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 1  EGKKSDIAPVVFQQKFSEVINTKY 24
          EG K+D  P  F+     VI   Y
Sbjct: 1  EGVKTDFGPPYFRDLLHPVIAKNY 24


>d1c2aa1 g.3.13.1 (A:4-64) Bowman-Birk inhibitor, BBI {Barley
           (Hordeum vulgare) [TaxId: 4513]}
          Length = 61

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 151 TKSDPPICQC 160
           T+S PPIC C
Sbjct: 13  TRSIPPICTC 22


>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 179

 Score = 25.9 bits (57), Expect = 3.2
 Identities = 4/19 (21%), Positives = 8/19 (42%)

Query: 112 SIRPNIKHWNTSTQDRRIK 130
           ++   I H  T  +   +K
Sbjct: 126 TLPAGIYHRFTLDEKNYVK 144


>d2g81i1 g.3.13.1 (I:17-72) Bowman-Birk inhibitor, BBI {Cowpea
           (Vigna unguiculata) [TaxId: 3917]}
          Length = 56

 Score = 23.3 bits (50), Expect = 6.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 151 TKSDPPICQC 160
           TKS PP C+C
Sbjct: 9   TKSIPPQCRC 18


>d2ilni1 g.3.13.1 (I:8-60) Bowman-Birk inhibitor, BBI {Snail medic
           (Medicago scutellata) [TaxId: 36901]}
          Length = 53

 Score = 22.9 bits (49), Expect = 9.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 151 TKSDPPICQC 160
           T+S PP CQC
Sbjct: 8   TRSIPPQCQC 17


>d1pbia_ g.3.13.1 (A:) Bowman-Birk inhibitor, BBI {Winter pea (Pisum
           sativum) [TaxId: 3888]}
          Length = 68

 Score = 23.3 bits (50), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 151 TKSDPPICQC 160
           TKS+PP C+C
Sbjct: 11  TKSNPPTCRC 20


>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 179

 Score = 24.4 bits (53), Expect = 9.6
 Identities = 3/19 (15%), Positives = 6/19 (31%)

Query: 112 SIRPNIKHWNTSTQDRRIK 130
           S+  +  HW     +    
Sbjct: 133 SVPAHTPHWFDMGSEPNFT 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 768,890
Number of extensions: 32217
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)