BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3162
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL ++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G Q
Sbjct: 568 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 627
Query: 82 PGEEMLPEVA 91
PGEE LP++A
Sbjct: 628 PGEEELPDIA 637
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 11 LGLYCGKVLTYALDFVLSTLRTTRLASFPDYL----MFHLKKFTM 51
+GLY V+T + D+V + + R+ PDY +F K+ T+
Sbjct: 147 IGLYGNGVVTKSGDYVSAITQAERIGEGPDYEVDEDIFRKKRLTI 191
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 29 TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT 73
+L+ + P L+ HLK+F+ W KL V+ P + +DL+
Sbjct: 280 SLKKIEIWKLPPVLLVHLKRFSYDGRWK-QKLQTSVDFPLENLDLS 324
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 29 TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT 73
+L+ + P L+ HLK+F+ W KL V+ P + +DL+
Sbjct: 280 SLKKIEIWKLPPVLLVHLKRFSYDGRWK-QKLQTSVDFPLENLDLS 324
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 35 LASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP 67
L S P L+ HLK+F+ W KLD VE P
Sbjct: 249 LWSLPKILVVHLKRFSYNRYWR-DKLDTVVEFP 280
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 26 VLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKL 60
V+ + TR+ S P Y + +LKK + + L KL
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 26 VLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKL 60
V+ + TR+ S P Y + +LKK + + L KL
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 8 KSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP 67
K L ++ TY+ D V +L S L+ K F E+ TLA+L VE P
Sbjct: 110 KQLFALAEAELKTYSPDIVEDLQLENKLTSEYTKLVASAKIFFEGEERTLAQLQPFVESP 169
Query: 68 D 68
D
Sbjct: 170 D 170
>pdb|1SZL|A Chain A, F-Spondin Tsr Domain 1
Length = 61
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 58 AKLDVEVEMPDTIDLTPLRGSG 79
A+LD+ V PDT D P G G
Sbjct: 34 AQLDLSVPCPDTQDFQPCMGPG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,841,512
Number of Sequences: 62578
Number of extensions: 93824
Number of successful extensions: 115
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)