BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3162
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL ++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608
Query: 82 PGEEMLPEVA 91
PGEE LP++A
Sbjct: 609 PGEEELPDIA 618
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL ++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608
Query: 82 PGEEMLPEVA 91
PGEE LP++A
Sbjct: 609 PGEEELPDIA 618
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL ++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608
Query: 82 PGEEMLPEVA 91
PGEE LP++A
Sbjct: 609 PGEEELPDIA 618
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 20 TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
+ AL + + ++TT L SFPDYL+ H++KF M+E W KLDV +++PD ID++ +R G
Sbjct: 531 SSALKGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKG 590
Query: 80 PQPGEEMLPE 89
QPGEE+LP+
Sbjct: 591 LQPGEELLPD 600
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 20 TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
+ AL + ++T+R ASFP+YL+ +KKFT DW K DV V+MPD +D+ LR G
Sbjct: 559 SSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSVDMPDLLDINHLRARG 618
Query: 80 PQPGEEMLPEVA 91
QPGEE LP+++
Sbjct: 619 LQPGEEELPDIS 630
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D++ LR G Q
Sbjct: 559 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQ 618
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 619 PGEEELPDIS 628
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D+ LR G Q
Sbjct: 561 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 620
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 621 PGEEELPDIS 630
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP YL+ +KKFT DW KLDV ++MPD +D++ LR G Q
Sbjct: 556 ALQAKSAGVKTSRFASFPQYLVVQIKKFTFGLDWIPKKLDVSIDMPDFLDISHLRAMGLQ 615
Query: 82 PGEEML 87
PGEE L
Sbjct: 616 PGEEEL 621
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 20 TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
+ AL + ++T+R A+FP+Y++ LKKFT DW KLD+ V++PD +DL LR +G
Sbjct: 542 SSALQAKSAGVKTSRFATFPEYMIVQLKKFTFGVDWVPKKLDMSVDVPDFLDLNRLRATG 601
Query: 80 PQPGEEMLPEV 90
Q GEE LP++
Sbjct: 602 LQAGEEELPDL 612
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW KLDV ++MPD +D+ LR +G +
Sbjct: 542 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATGLK 601
Query: 82 PGEEML 87
GEE L
Sbjct: 602 SGEEEL 607
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 29 TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLP 88
+L ++R+A+FP+ L+ HLKK+T D+T KL+V +++PD ID+ LRG G + GE L
Sbjct: 555 SLNSSRMATFPEVLIIHLKKYTYNADYTPKKLNVFMDVPDIIDIDSLRGRGIKEGEVPLK 614
Query: 89 E 89
E
Sbjct: 615 E 615
>sp|Q9FIQ1|UBP21_ARATH Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana
GN=UBP21 PE=2 SV=1
Length = 732
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 31 RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQP 82
+ R P FHLK+FT + T+ K+ +E P +DL+P S P
Sbjct: 355 KQLRFDKLPPVATFHLKRFT-NDGVTMEKIFDHIEFPLELDLSPFMSSNHDP 405
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 37 SFPDYLMFHLKKFTMKEDW-TLAKLDVEVEMPDTIDLTPL 75
SFP L LK+F ++ + K++ + E P+TIDL+P
Sbjct: 388 SFPPVLHLQLKRFEYDFNYDQMVKVNDKYEFPETIDLSPF 427
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 OS=Drosophila melanogaster
GN=Nipped-A PE=1 SV=3
Length = 3803
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 5 QPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFH-LKKFTMKEDWTLAKLDVE 63
QP + +GL G L+ L T L + L FH L + ED TLAKLD
Sbjct: 1312 QPANAQIGLMDGNTFCTTLE---PRLFTIDLTNTYHKLFFHELLTLSEAEDATLAKLDCY 1368
Query: 64 VEMPDTIDLTPLRGSG 79
+P +L PLR S
Sbjct: 1369 KNVP---NLIPLRTSA 1381
>sp|Q7M962|NAPA_WOLSU Periplasmic nitrate reductase OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=napA PE=3 SV=2
Length = 928
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 47 KKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
K+F +KE W K+D ++ +PD ++ G P+
Sbjct: 616 KRFKLKEVWGAKKIDDKLTLPDVLEKAKAMGYSPE 650
>sp|A3GFJ4|AIM9_PICST Altered inheritance of mitochondria protein 9, mitochondrial
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=AIM9 PE=3 SV=1
Length = 631
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 20 TYALDFVLSTLRTTRLASFPDYLMFH-LKKFTMKED 54
+Y +DF ST++ L S+P+++ +H K + ++ED
Sbjct: 428 SYFIDFEYSTIKPFILTSYPNFVAYHGAKVYNLEED 463
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,221,262
Number of Sequences: 539616
Number of extensions: 1221231
Number of successful extensions: 2459
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2446
Number of HSP's gapped (non-prelim): 18
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)