Query psy3162
Match_columns 91
No_of_seqs 140 out of 823
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:58:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 99.9 1.3E-22 4.5E-27 165.4 5.0 86 5-90 543-636 (854)
2 2y6e_A Ubiquitin carboxyl-term 99.7 9.4E-19 3.2E-23 128.9 4.9 73 5-78 208-292 (367)
3 2gfo_A Ubiquitin carboxyl-term 99.7 4E-17 1.4E-21 122.3 7.0 72 6-78 246-329 (396)
4 3i3t_A Ubiquitin carboxyl-term 99.7 2.1E-17 7.3E-22 119.6 5.0 72 6-78 204-287 (355)
5 3mhs_A Ubiquitin carboxyl-term 99.7 2.8E-17 9.7E-22 124.8 4.9 76 6-81 317-402 (476)
6 3nhe_A Ubiquitin carboxyl-term 99.7 4.2E-17 1.4E-21 117.8 4.9 73 6-79 194-278 (348)
7 1vjv_A Ubiquitin carboxyl-term 99.6 2.3E-16 7.8E-21 117.9 4.8 73 7-79 185-264 (415)
8 2ayn_A Ubiquitin carboxyl-term 99.6 1.8E-16 6E-21 117.5 2.7 73 7-79 193-272 (404)
9 1nb8_A Ubiquitin carboxyl-term 99.6 7.3E-16 2.5E-20 113.7 3.5 71 7-78 150-232 (353)
10 2f1z_A Ubiquitin carboxyl-term 99.5 4.8E-15 1.6E-19 114.3 5.8 71 7-78 319-401 (522)
11 2vhf_A Ubiquitin carboxyl-term 98.0 1.7E-06 5.7E-11 65.6 1.8 44 34-82 162-205 (374)
12 2con_A RUH-035 protein, NIN on 83.1 0.63 2.2E-05 27.8 1.9 36 15-51 28-65 (79)
13 1tfi_A Transcriptional elongat 52.9 24 0.00084 18.7 3.9 29 15-43 7-37 (50)
14 2lk0_A RNA-binding protein 5; 51.9 1.9 6.4E-05 21.2 -0.8 20 16-35 4-23 (32)
15 6rxn_A Rubredoxin; electron tr 49.7 9.4 0.00032 20.2 1.8 14 15-28 28-41 (46)
16 2k1p_A Zinc finger RAN-binding 49.1 3.2 0.00011 20.4 -0.2 18 16-33 5-22 (33)
17 1yk4_A Rubredoxin, RD; electro 46.9 12 0.00042 20.2 2.0 16 14-29 32-47 (52)
18 2kn9_A Rubredoxin; metalloprot 46.2 12 0.00042 22.2 2.1 18 15-32 58-75 (81)
19 4rxn_A Rubredoxin; electron tr 46.2 11 0.00037 20.7 1.7 14 15-28 34-47 (54)
20 2v3b_B Rubredoxin 2, rubredoxi 43.6 11 0.00039 20.6 1.5 18 14-31 33-50 (55)
21 2i5o_A DNA polymerase ETA; zin 43.5 6.7 0.00023 20.1 0.5 12 16-27 8-19 (39)
22 1znf_A 31ST zinc finger from X 41.2 11 0.00038 15.4 1.0 9 18-26 2-10 (27)
23 1dx8_A Rubredoxin; electron tr 39.2 15 0.00053 21.0 1.7 18 14-31 37-54 (70)
24 1ard_A Yeast transcription fac 37.6 13 0.00045 15.3 1.0 10 17-26 2-11 (29)
25 1e8j_A Rubredoxin; iron-sulfur 37.5 12 0.00041 20.2 1.0 14 15-28 34-47 (52)
26 2c6a_A Ubiquitin-protein ligas 37.5 6.6 0.00023 21.1 -0.1 17 16-32 12-28 (46)
27 2kvh_A Zinc finger and BTB dom 37.3 11 0.00037 15.6 0.7 10 17-26 3-12 (27)
28 1qyp_A RNA polymerase II; tran 37.2 25 0.00086 18.7 2.3 27 17-43 15-43 (57)
29 1paa_A Yeast transcription fac 36.3 14 0.00048 15.4 1.0 10 17-26 2-11 (30)
30 3u50_C Telomerase-associated p 36.2 9.5 0.00033 25.5 0.5 16 16-31 58-73 (172)
31 2m0e_A Zinc finger and BTB dom 34.7 15 0.00051 15.0 0.9 10 17-26 2-11 (29)
32 1rik_A E6APC1 peptide; E6-bind 33.7 13 0.00046 15.3 0.7 10 17-26 2-11 (29)
33 2m0d_A Zinc finger and BTB dom 33.2 14 0.00048 15.2 0.7 10 17-26 3-12 (30)
34 2kvf_A Zinc finger and BTB dom 32.9 15 0.0005 15.2 0.7 10 17-26 3-12 (28)
35 1klr_A Zinc finger Y-chromosom 32.7 16 0.00056 15.0 0.9 10 17-26 2-11 (30)
36 2m0f_A Zinc finger and BTB dom 32.5 14 0.00048 15.1 0.6 10 17-26 2-11 (29)
37 4ayb_P DNA-directed RNA polyme 32.4 14 0.00047 19.9 0.7 10 18-27 4-13 (48)
38 2lvu_A Zinc finger and BTB dom 38.3 9.7 0.00033 15.6 0.0 10 17-26 2-11 (26)
39 1p7a_A BF3, BKLF, kruppel-like 32.0 17 0.00058 16.2 0.9 11 16-26 10-20 (37)
40 2kfq_A FP1; protein, de novo p 31.4 18 0.0006 15.9 0.9 10 17-26 2-11 (32)
41 1s24_A Rubredoxin 2; electron 31.4 23 0.00079 21.2 1.6 15 15-29 66-80 (87)
42 3j21_i 50S ribosomal protein L 29.6 24 0.00081 21.1 1.5 13 15-27 33-45 (83)
43 2elx_A Zinc finger protein 406 28.8 18 0.00063 15.7 0.7 10 17-26 7-16 (35)
44 2kvg_A Zinc finger and BTB dom 28.7 12 0.0004 15.7 -0.0 10 17-26 3-12 (27)
45 2elm_A Zinc finger protein 406 28.2 18 0.00063 16.3 0.7 10 17-26 9-18 (37)
46 2elr_A Zinc finger protein 406 27.7 23 0.0008 15.5 1.0 11 16-26 8-18 (36)
47 1ffk_W Ribosomal protein L37AE 26.8 41 0.0014 19.5 2.1 23 15-37 25-47 (73)
48 3iz5_m 60S ribosomal protein L 26.7 27 0.00093 21.2 1.4 13 15-27 34-46 (92)
49 1srk_A Zinc finger protein ZFP 26.6 21 0.00073 15.6 0.7 10 17-26 7-16 (35)
50 2lvt_A Zinc finger and BTB dom 32.1 14 0.00048 15.4 0.0 10 17-26 2-11 (29)
51 1rim_A E6APC2 peptide; E6-bind 25.9 25 0.00087 15.4 0.9 10 17-26 2-11 (33)
52 2lvr_A Zinc finger and BTB dom 31.2 15 0.00051 15.3 0.0 10 17-26 3-12 (30)
53 3izc_m 60S ribosomal protein R 25.1 29 0.001 21.0 1.3 13 15-27 34-46 (92)
54 2els_A Zinc finger protein 406 25.1 23 0.00079 15.6 0.7 10 17-26 9-18 (36)
55 1vq8_Z 50S ribosomal protein L 25.0 26 0.00088 20.7 1.0 11 16-26 26-36 (83)
56 2elt_A Zinc finger protein 406 25.0 23 0.00079 15.5 0.7 11 16-26 8-18 (36)
57 2elv_A Zinc finger protein 406 24.3 25 0.00085 15.5 0.7 10 17-26 9-18 (36)
58 1dxg_A Desulforedoxin; non-hem 24.3 38 0.0013 16.5 1.5 14 16-29 5-18 (36)
59 2elp_A Zinc finger protein 406 24.0 25 0.00084 15.6 0.7 10 17-26 9-18 (37)
60 2k5c_A Uncharacterized protein 23.5 24 0.00083 21.3 0.7 11 16-26 50-60 (95)
61 4a17_Y RPL37A, 60S ribosomal p 23.5 30 0.001 21.5 1.1 13 15-27 34-46 (103)
62 3ga8_A HTH-type transcriptiona 23.4 22 0.00076 20.1 0.5 12 16-27 35-46 (78)
63 2elq_A Zinc finger protein 406 22.4 28 0.00095 15.3 0.7 10 17-26 9-18 (36)
64 1f62_A Transcription factor WS 22.1 36 0.0012 17.5 1.2 11 16-26 40-50 (51)
65 3u5e_d L34, YL28, 60S ribosoma 21.7 92 0.0031 19.5 3.2 33 34-66 63-95 (113)
66 1njq_A Superman protein; zinc- 21.6 29 0.001 15.7 0.7 10 17-26 6-15 (39)
67 2e9h_A EIF-5, eukaryotic trans 21.4 9.3 0.00032 25.4 -1.6 18 18-35 127-144 (157)
68 2elo_A Zinc finger protein 406 20.8 22 0.00074 15.8 0.1 11 16-26 8-18 (37)
69 2e72_A POGO transposable eleme 20.7 35 0.0012 18.4 0.9 12 16-27 11-22 (49)
70 2cr8_A MDM4 protein; ZF-ranbp 20.5 37 0.0012 18.6 1.0 17 15-31 9-25 (53)
71 1zfo_A LAsp-1; LIM domain, zin 20.2 39 0.0013 15.8 1.0 11 18-28 4-14 (31)
72 4a17_W RPL31, 60S ribosomal pr 20.1 1.1E+02 0.0037 19.1 3.3 33 34-66 62-94 (111)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=165.43 Aligned_cols=86 Identities=44% Similarity=0.782 Sum_probs=81.0
Q ss_pred CCCCchhhhh--------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCC
Q psy3162 5 QPTKSFLGLY--------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLR 76 (91)
Q Consensus 5 ~~~~sl~~cl--------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~ 76 (91)
++.+||++|| +++|+|++|+.++.|+|++.|.+||+||+||||||.++.+|...|+++.|.||+.|||++|+
T Consensus 543 ~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 543 RAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp CEECCHHHHHHHHHSCEEEEEEEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGB
T ss_pred cCCCCHHHHHHHhcCceEeeeeeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhc
Confidence 4558999999 56799999999999999999999999999999999997679999999999999999999999
Q ss_pred CCCCCCCCccCCCC
Q psy3162 77 GSGPQPGEEMLPEV 90 (91)
Q Consensus 77 ~~g~q~ge~~lpe~ 90 (91)
+.|.|+||+++|+.
T Consensus 623 ~~~~q~~E~~lp~~ 636 (854)
T 3ihp_A 623 GTGLQPGEEELPDI 636 (854)
T ss_dssp CCCSCTTCCBCCCC
T ss_pred cCCCCCCceecccc
Confidence 99999999999984
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.74 E-value=9.4e-19 Score=128.86 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=64.7
Q ss_pred CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCC-CCCC
Q psy3162 5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPD-TIDL 72 (91)
Q Consensus 5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~-~LDl 72 (91)
...+||++|+ .|.|+|++|++++.|+|++.|.++|+||+||||||.+ .+|...|+++.|.||. .|||
T Consensus 208 ~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~-~~~~~~K~~~~v~fp~~~Ldl 286 (367)
T 2y6e_A 208 KTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSY-NRYWRDKLDTVVEFPIRGLNM 286 (367)
T ss_dssp --CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEE-CSSCEEECCCCEECCSSCEEC
T ss_pred CCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeee-cCccceecCceEEecCCcCCh
Confidence 3568999999 2579999999999999999999999999999999999 4677899999999995 7999
Q ss_pred CCCCCC
Q psy3162 73 TPLRGS 78 (91)
Q Consensus 73 s~~~~~ 78 (91)
++|...
T Consensus 287 ~~~~~~ 292 (367)
T 2y6e_A 287 SEFVCN 292 (367)
T ss_dssp GGGBSC
T ss_pred hhhccC
Confidence 999864
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.68 E-value=4e-17 Score=122.30 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=64.1
Q ss_pred CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162 6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT 73 (91)
Q Consensus 6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls 73 (91)
+..||++|+ .|.|+|++|+.++.|+|++.|.++|+||+||||||.++..| ..|+++.|.|| +.|||+
T Consensus 246 ~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~-~~K~~~~v~fp~~~Ldl~ 324 (396)
T 2gfo_A 246 SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTSVDFPLENLDLS 324 (396)
T ss_dssp SEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSS-EEECCCEEECCSSCBCCG
T ss_pred ccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCcc-ceecCceEecchhhcccc
Confidence 357899998 25699999999999999999999999999999999996545 57999999999 679999
Q ss_pred CCCCC
Q psy3162 74 PLRGS 78 (91)
Q Consensus 74 ~~~~~ 78 (91)
+|...
T Consensus 325 ~~~~~ 329 (396)
T 2gfo_A 325 QYVIG 329 (396)
T ss_dssp GGBCS
T ss_pred ccccC
Confidence 99864
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.68 E-value=2.1e-17 Score=119.63 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=63.9
Q ss_pred CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162 6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT 73 (91)
Q Consensus 6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls 73 (91)
+.+||++|+ .|.|+|++|++++.|+|++.|.++|+||+||||||.+ .++...|+++.|.|| +.|||+
T Consensus 204 ~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~-~~~~~~K~~~~v~fp~~~l~l~ 282 (355)
T 3i3t_A 204 GKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSA-SRGSIKKSSVGVDFPLQRLSLG 282 (355)
T ss_dssp --CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEEC-CSSCCEECCCCCBCCSSCEECG
T ss_pred CccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheec-CCCCceECCcceeCCccccCch
Confidence 467999999 2569999999999999999999999999999999999 568889999999999 779999
Q ss_pred CCCCC
Q psy3162 74 PLRGS 78 (91)
Q Consensus 74 ~~~~~ 78 (91)
+|...
T Consensus 283 ~~~~~ 287 (355)
T 3i3t_A 283 DFASD 287 (355)
T ss_dssp GGBC-
T ss_pred hhccC
Confidence 99754
No 5
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.67 E-value=2.8e-17 Score=124.82 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCCchhhhh--------c--CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162 6 PTKSFLGLY--------C--GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL 75 (91)
Q Consensus 6 ~~~sl~~cl--------~--~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~ 75 (91)
...||++|+ + +.|+|++|+.++.|+|+..|.++|+||+||||||.++.+|...|+++.|.||..|||++|
T Consensus 317 ~~~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~ 396 (476)
T 3mhs_A 317 DKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNY 396 (476)
T ss_dssp TCCBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGG
T ss_pred hhhHHHHHHHHhcChhhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhh
Confidence 346899998 2 259999999999999999999999999999999999778999999999999999999999
Q ss_pred CCCCCC
Q psy3162 76 RGSGPQ 81 (91)
Q Consensus 76 ~~~g~q 81 (91)
...+..
T Consensus 397 ~~~~~~ 402 (476)
T 3mhs_A 397 CSTKEK 402 (476)
T ss_dssp BSCCBC
T ss_pred cCcccc
Confidence 976543
No 6
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.66 E-value=4.2e-17 Score=117.78 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=65.8
Q ss_pred CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162 6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT 73 (91)
Q Consensus 6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls 73 (91)
+.+||++|+ .+.|+|++|+.++.|.|+..|.++|++|+||||||.+ ..+...|++..|.|| +.|||+
T Consensus 194 ~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~-~~~~~~K~~~~v~fp~~~ldl~ 272 (348)
T 3nhe_A 194 PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSE-SRIRTSKLTTFVNFPLRDLDLR 272 (348)
T ss_dssp SCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCC-CSSCCCBCCCCEECCSSCEECG
T ss_pred CCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccc-cCCceeecCcceeccCCcCCHh
Confidence 457999999 2569999999999999999999999999999999998 467889999999999 789999
Q ss_pred CCCCCC
Q psy3162 74 PLRGSG 79 (91)
Q Consensus 74 ~~~~~g 79 (91)
+|...+
T Consensus 273 ~~~~~~ 278 (348)
T 3nhe_A 273 EFASEN 278 (348)
T ss_dssp GGBCTT
T ss_pred hhcCCC
Confidence 998654
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.62 E-value=2.3e-16 Score=117.90 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=57.1
Q ss_pred CCchhhhh------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCCCC
Q psy3162 7 TKSFLGLY------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRGSG 79 (91)
Q Consensus 7 ~~sl~~cl------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~~g 79 (91)
.-+|.+|+ ...|+|++|+..+.|+|++.|.++|+||+||||||.++.. +...|++..|.||..|||++|+..+
T Consensus 185 ~~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~ 264 (415)
T 1vjv_A 185 TNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPE 264 (415)
T ss_dssp CCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHH
T ss_pred cchHHHHHHHHhhhhhhhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChh
Confidence 34788888 2468999999999999999999999999999999999643 6789999999999999999998754
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.60 E-value=1.8e-16 Score=117.48 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCchhhhh------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCCCC
Q psy3162 7 TKSFLGLY------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRGSG 79 (91)
Q Consensus 7 ~~sl~~cl------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~~g 79 (91)
..+|.+|+ ...|+|++|++.+.|+|++.|.++|+||+||||||.++.. +...|++..|.||..|||++|+..+
T Consensus 193 ~~~l~~~L~~~~~e~l~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~ 272 (404)
T 2ayn_A 193 VKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPE 272 (404)
T ss_dssp CCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHH
T ss_pred cccHHHHHHHhcccceeecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChh
Confidence 35788888 2458999999999999999999999999999999999633 4678999999999999999998753
No 9
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.57 E-value=7.3e-16 Score=113.65 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162 7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP 74 (91)
Q Consensus 7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~ 74 (91)
..++.+|+ .+.|.|+.|+ ++.|+|++.|.++|+||+||||||.++. .|...|++..|.||..|||++
T Consensus 150 ~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~ 228 (353)
T 1nb8_A 150 KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 228 (353)
T ss_dssp CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence 35788887 2569999996 6779999999999999999999999964 377889999999999999999
Q ss_pred CCCC
Q psy3162 75 LRGS 78 (91)
Q Consensus 75 ~~~~ 78 (91)
|+..
T Consensus 229 ~~~~ 232 (353)
T 1nb8_A 229 FLQK 232 (353)
T ss_dssp GBSS
T ss_pred hhcc
Confidence 9864
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=114.31 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162 7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP 74 (91)
Q Consensus 7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~ 74 (91)
..++.+|+ .+.|.|+.|+ ++.|+|++.|.++|+||+||||||.++. .|...|+++.|+||..|||++
T Consensus 319 ~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 397 (522)
T 2f1z_A 319 KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 397 (522)
T ss_dssp CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence 35788887 2579999996 5779999999999999999999999974 377899999999999999999
Q ss_pred CCCC
Q psy3162 75 LRGS 78 (91)
Q Consensus 75 ~~~~ 78 (91)
|+..
T Consensus 398 ~~~~ 401 (522)
T 2f1z_A 398 FLQK 401 (522)
T ss_dssp GBSS
T ss_pred hhcc
Confidence 9864
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.00 E-value=1.7e-06 Score=65.58 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=39.3
Q ss_pred ecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCCCCCCCC
Q psy3162 34 RLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQP 82 (91)
Q Consensus 34 ~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~~~g~q~ 82 (91)
.|.++|+||+||+.|| +..-|+-..|.||.+||+.+++...+++
T Consensus 162 kisrLP~yLtVq~vRF-----gKkaKIlrkV~fp~eLDvtdl~tdelr~ 205 (374)
T 2vhf_A 162 KFAEAPSCLIIQMPRF-----GKDFKLFKKIFPSLELNITDLLEDTPRQ 205 (374)
T ss_dssp EESSCCSEEEEECCCC-----SSSSSCCCCCBCCSEECCGGGBSSSCCB
T ss_pred eeecCCcceEEeeecc-----CccccccCCCCCcchhccHhhcCcchhh
Confidence 3999999999999999 2445999999999999999999888765
No 12
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=83.07 E-value=0.63 Score=27.82 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=25.4
Q ss_pred cCCcccCCCCCcceeEEEeecccCCCeeEEEee-ceE-E
Q psy3162 15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLK-KFT-M 51 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlk-RF~-~ 51 (91)
+...+|++||..+--.-...+..= -.+.+|++ +|. +
T Consensus 28 ~~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~ 65 (79)
T 2con_A 28 MNRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPKVL 65 (79)
T ss_dssp SSCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCCCC
T ss_pred cccccccccCcccceEEEEEECCC-CcEEEeccCCcccc
Confidence 578899999997654444445544 66788997 577 5
No 13
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=52.88 E-value=24 Score=18.70 Aligned_cols=29 Identities=10% Similarity=-0.143 Sum_probs=20.4
Q ss_pred cCCcccCCCCCcceeEEEeecccC--CCeeE
Q psy3162 15 CGKVLTYALDFVLSTLRTTRLASF--PDYLM 43 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a~k~~~~~~l--P~vLi 43 (91)
.....|++|+......-+..+.+- |..+.
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~F 37 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTF 37 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEE
Confidence 356899999998877677666665 44443
No 14
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=51.85 E-value=1.9 Score=21.16 Aligned_cols=20 Identities=10% Similarity=-0.179 Sum_probs=13.9
Q ss_pred CCcccCCCCCcceeEEEeec
Q psy3162 16 GKVLTYALDFVLSTLRTTRL 35 (91)
Q Consensus 16 ~~~~C~~C~~~~~a~k~~~~ 35 (91)
.+|.|+.|+...-+.+...+
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~ 23 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCF 23 (32)
T ss_dssp SEEECTTTCCEEETTCCBCT
T ss_pred CCCCcCcCcCCcChhcceec
Confidence 47999999887666554443
No 15
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.75 E-value=9.4 Score=20.23 Aligned_cols=14 Identities=0% Similarity=-0.330 Sum_probs=11.1
Q ss_pred cCCcccCCCCCcce
Q psy3162 15 CGKVLTYALDFVLS 28 (91)
Q Consensus 15 ~~~~~C~~C~~~~~ 28 (91)
-++|.|+.||....
T Consensus 28 P~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 28 PDDWCCPVCGVSKD 41 (46)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCcCCCCcHH
Confidence 46899999998654
No 16
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=49.09 E-value=3.2 Score=20.42 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=13.1
Q ss_pred CCcccCCCCCcceeEEEe
Q psy3162 16 GKVLTYALDFVLSTLRTT 33 (91)
Q Consensus 16 ~~~~C~~C~~~~~a~k~~ 33 (91)
.+|.|+.|+...-|.++.
T Consensus 5 gDW~C~~C~~~Nfa~R~~ 22 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSE 22 (33)
T ss_dssp SSCBCSSSCCBCCTTCSB
T ss_pred CCcccCCCCCcccccccc
Confidence 589999998876554443
No 17
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.94 E-value=12 Score=20.18 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=12.5
Q ss_pred hcCCcccCCCCCccee
Q psy3162 14 YCGKVLTYALDFVLST 29 (91)
Q Consensus 14 l~~~~~C~~C~~~~~a 29 (91)
+-++|.|+.|+.....
T Consensus 32 lP~dw~CP~Cg~~K~~ 47 (52)
T 1yk4_A 32 LPDDWVCPLCGAPKSE 47 (52)
T ss_dssp SCTTCBCTTTCCBGGG
T ss_pred CCCCCcCCCCCCCHHH
Confidence 3579999999986543
No 18
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=46.24 E-value=12 Score=22.21 Aligned_cols=18 Identities=6% Similarity=-0.234 Sum_probs=13.3
Q ss_pred cCCcccCCCCCcceeEEE
Q psy3162 15 CGKVLTYALDFVLSTLRT 32 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a~k~ 32 (91)
-++|.|+.|+......+.
T Consensus 58 PddW~CPvCga~K~~F~~ 75 (81)
T 2kn9_A 58 PDDWSCPDCGAAKSDFEM 75 (81)
T ss_dssp CTTCCCTTTCCCGGGEEE
T ss_pred CCCCcCCCCCCCHHHcEE
Confidence 478999999986654443
No 19
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.21 E-value=11 Score=20.68 Aligned_cols=14 Identities=0% Similarity=-0.337 Sum_probs=11.6
Q ss_pred cCCcccCCCCCcce
Q psy3162 15 CGKVLTYALDFVLS 28 (91)
Q Consensus 15 ~~~~~C~~C~~~~~ 28 (91)
-++|.|+.|+....
T Consensus 34 P~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 34 PDDWVCPLCGVGKD 47 (54)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCcCCCCcHH
Confidence 57899999998654
No 20
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.58 E-value=11 Score=20.55 Aligned_cols=18 Identities=0% Similarity=-0.249 Sum_probs=13.3
Q ss_pred hcCCcccCCCCCcceeEE
Q psy3162 14 YCGKVLTYALDFVLSTLR 31 (91)
Q Consensus 14 l~~~~~C~~C~~~~~a~k 31 (91)
+-++|.|+.|+......+
T Consensus 33 lP~dw~CP~Cga~K~~F~ 50 (55)
T 2v3b_B 33 IPADWVCPDCGVGKIDFE 50 (55)
T ss_dssp SCTTCCCTTTCCCGGGEE
T ss_pred CCCCCcCCCCCCCHHHce
Confidence 357899999998665433
No 21
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=43.47 E-value=6.7 Score=20.14 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=9.6
Q ss_pred CCcccCCCCCcc
Q psy3162 16 GKVLTYALDFVL 27 (91)
Q Consensus 16 ~~~~C~~C~~~~ 27 (91)
..+.|++||+..
T Consensus 8 ~~~~C~~C~~~i 19 (39)
T 2i5o_A 8 DQVPCEKCGSLV 19 (39)
T ss_dssp CEEECTTTCCEE
T ss_pred CCcccccccCcC
Confidence 468899999864
No 22
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.19 E-value=11 Score=15.40 Aligned_cols=9 Identities=0% Similarity=-0.437 Sum_probs=7.0
Q ss_pred cccCCCCCc
Q psy3162 18 VLTYALDFV 26 (91)
Q Consensus 18 ~~C~~C~~~ 26 (91)
|.|+.|++.
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 678888864
No 23
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=39.20 E-value=15 Score=21.00 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=13.5
Q ss_pred hcCCcccCCCCCcceeEE
Q psy3162 14 YCGKVLTYALDFVLSTLR 31 (91)
Q Consensus 14 l~~~~~C~~C~~~~~a~k 31 (91)
+-++|.|+.|+......+
T Consensus 37 lPddw~CP~Cga~K~~F~ 54 (70)
T 1dx8_A 37 LSDSFMCPACRSPKNQFK 54 (70)
T ss_dssp SCTTCBCTTTCCBGGGEE
T ss_pred CCCCCcCCCCCCCHHHce
Confidence 357899999998765443
No 24
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=37.63 E-value=13 Score=15.32 Aligned_cols=10 Identities=0% Similarity=-0.187 Sum_probs=7.7
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 4789999874
No 25
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.53 E-value=12 Score=20.21 Aligned_cols=14 Identities=0% Similarity=-0.380 Sum_probs=11.2
Q ss_pred cCCcccCCCCCcce
Q psy3162 15 CGKVLTYALDFVLS 28 (91)
Q Consensus 15 ~~~~~C~~C~~~~~ 28 (91)
-++|.|+.|+....
T Consensus 34 P~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 34 PDDWACPVCGASKD 47 (52)
T ss_dssp CTTCCCSSSCCCTT
T ss_pred CCCCcCCCCCCcHH
Confidence 57899999998543
No 26
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=37.46 E-value=6.6 Score=21.06 Aligned_cols=17 Identities=6% Similarity=-0.144 Sum_probs=12.9
Q ss_pred CCcccCCCCCcceeEEE
Q psy3162 16 GKVLTYALDFVLSTLRT 32 (91)
Q Consensus 16 ~~~~C~~C~~~~~a~k~ 32 (91)
+.|+|..|++.....++
T Consensus 12 D~WkC~~C~~~N~Pl~r 28 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPS 28 (46)
T ss_dssp GCEECTTTCCEECSSCS
T ss_pred ceEecccccccCCCccc
Confidence 68999999987665443
No 27
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.29 E-value=11 Score=15.60 Aligned_cols=10 Identities=0% Similarity=-0.429 Sum_probs=7.8
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 4789999874
No 28
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=37.24 E-value=25 Score=18.74 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=17.9
Q ss_pred CcccCCCCCcceeEEEeeccc--CCCeeE
Q psy3162 17 KVLTYALDFVLSTLRTTRLAS--FPDYLM 43 (91)
Q Consensus 17 ~~~C~~C~~~~~a~k~~~~~~--lP~vLi 43 (91)
...|++||......-++.+.+ =|..+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~f 43 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIF 43 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEE
Confidence 578999999766666666544 355443
No 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=36.35 E-value=14 Score=15.42 Aligned_cols=10 Identities=0% Similarity=-0.356 Sum_probs=7.6
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 3789999874
No 30
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=36.17 E-value=9.5 Score=25.54 Aligned_cols=16 Identities=0% Similarity=-0.053 Sum_probs=11.3
Q ss_pred CCcccCCCCCcceeEE
Q psy3162 16 GKVLTYALDFVLSTLR 31 (91)
Q Consensus 16 ~~~~C~~C~~~~~a~k 31 (91)
+.|+|++|+.......
T Consensus 58 g~~~CekC~~~~~~~~ 73 (172)
T 3u50_C 58 DSFFCESCQQFINPQV 73 (172)
T ss_dssp TEEEETTTTEECCCEE
T ss_pred CeEECCCCCCCCCceE
Confidence 5699999998733333
No 31
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.69 E-value=15 Score=15.00 Aligned_cols=10 Identities=10% Similarity=-0.300 Sum_probs=7.4
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 3778888864
No 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.73 E-value=13 Score=15.35 Aligned_cols=10 Identities=10% Similarity=-0.297 Sum_probs=7.4
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 1rik_A 2 KFACPECPKR 11 (29)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCCCch
Confidence 3678888864
No 33
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.21 E-value=14 Score=15.24 Aligned_cols=10 Identities=0% Similarity=-0.476 Sum_probs=7.7
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 4789999874
No 34
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.93 E-value=15 Score=15.18 Aligned_cols=10 Identities=0% Similarity=-0.423 Sum_probs=7.8
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (28)
T 2kvf_A 3 PYSCSVCGKR 12 (28)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCCCcc
Confidence 4789999874
No 35
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.65 E-value=16 Score=15.00 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=7.5
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1klr_A 2 TYQCQYCEFR 11 (30)
T ss_dssp CCCCSSSSCC
T ss_pred CccCCCCCCc
Confidence 3788888874
No 36
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.48 E-value=14 Score=15.14 Aligned_cols=10 Identities=0% Similarity=-0.310 Sum_probs=7.4
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2m0f_A 2 PLKCRECGKQ 11 (29)
T ss_dssp CEECTTTSCE
T ss_pred CccCCCCCCc
Confidence 3678888864
No 37
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=32.42 E-value=14 Score=19.93 Aligned_cols=10 Identities=0% Similarity=-0.536 Sum_probs=4.6
Q ss_pred cccCCCCCcc
Q psy3162 18 VLTYALDFVL 27 (91)
Q Consensus 18 ~~C~~C~~~~ 27 (91)
|.|-+||...
T Consensus 4 Y~C~rCg~~f 13 (48)
T 4ayb_P 4 YRCGKCWKTF 13 (48)
T ss_dssp -CCCCTTTTC
T ss_pred EEeeccCCCc
Confidence 4555555443
No 38
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.28 E-value=9.7 Score=15.61 Aligned_cols=10 Identities=0% Similarity=-0.343 Sum_probs=7.4
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 3778888864
No 39
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=32.02 E-value=17 Score=16.19 Aligned_cols=11 Identities=9% Similarity=-0.242 Sum_probs=8.6
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
..|.|+.|++.
T Consensus 10 k~~~C~~C~k~ 20 (37)
T 1p7a_A 10 KPFQCPDCDRS 20 (37)
T ss_dssp SSBCCTTTCCC
T ss_pred CCccCCCCCcc
Confidence 35899999874
No 40
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=31.40 E-value=18 Score=15.85 Aligned_cols=10 Identities=10% Similarity=-0.336 Sum_probs=7.5
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 3778888874
No 41
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.36 E-value=23 Score=21.24 Aligned_cols=15 Identities=0% Similarity=-0.354 Sum_probs=11.6
Q ss_pred cCCcccCCCCCccee
Q psy3162 15 CGKVLTYALDFVLST 29 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a 29 (91)
-++|.|+.|+.....
T Consensus 66 PddW~CPvCga~K~~ 80 (87)
T 1s24_A 66 PDDWCCPDCGATKED 80 (87)
T ss_dssp CTTCCCSSSCCCGGG
T ss_pred CCCCCCCCCCCCHHH
Confidence 478999999986543
No 42
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.62 E-value=24 Score=21.05 Aligned_cols=13 Identities=8% Similarity=-0.363 Sum_probs=10.6
Q ss_pred cCCcccCCCCCcc
Q psy3162 15 CGKVLTYALDFVL 27 (91)
Q Consensus 15 ~~~~~C~~C~~~~ 27 (91)
-..|.|+.|++..
T Consensus 33 ~~ky~CpfCGk~~ 45 (83)
T 3j21_i 33 RQKHTCPVCGRKA 45 (83)
T ss_dssp HSCBCCSSSCSSC
T ss_pred hcccCCCCCCCce
Confidence 4689999999874
No 43
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.79 E-value=18 Score=15.70 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 7 ~~~C~~C~k~ 16 (35)
T 2elx_A 7 GYVCALCLKK 16 (35)
T ss_dssp SEECSSSCCE
T ss_pred CeECCCCcch
Confidence 5889999874
No 44
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.70 E-value=12 Score=15.65 Aligned_cols=10 Identities=0% Similarity=-0.533 Sum_probs=7.5
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvg_A 3 PYRCPLCRAG 12 (27)
T ss_dssp TEEETTTTEE
T ss_pred CcCCCCCCcc
Confidence 4789999863
No 45
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.20 E-value=18 Score=16.34 Aligned_cols=10 Identities=0% Similarity=-0.091 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elm_A 9 LYYCSQCHYS 18 (37)
T ss_dssp EEECSSSSCE
T ss_pred CeECCCCCcc
Confidence 4889999874
No 46
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.72 E-value=23 Score=15.49 Aligned_cols=11 Identities=9% Similarity=-0.281 Sum_probs=8.5
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
..|.|+.|++.
T Consensus 8 ~~~~C~~C~k~ 18 (36)
T 2elr_A 8 KTHLCDMCGKK 18 (36)
T ss_dssp SSCBCTTTCCB
T ss_pred CCeecCcCCCC
Confidence 35889999874
No 47
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.76 E-value=41 Score=19.45 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=13.4
Q ss_pred cCCcccCCCCCcceeEEEeeccc
Q psy3162 15 CGKVLTYALDFVLSTLRTTRLAS 37 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a~k~~~~~~ 37 (91)
-..|.|+.|++..--.....||.
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~ 47 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWV 47 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEE
Confidence 46788999987543223334444
No 48
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.67 E-value=27 Score=21.18 Aligned_cols=13 Identities=8% Similarity=-0.205 Sum_probs=10.4
Q ss_pred cCCcccCCCCCcc
Q psy3162 15 CGKVLTYALDFVL 27 (91)
Q Consensus 15 ~~~~~C~~C~~~~ 27 (91)
-..|.|+.|++..
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3iz5_m 34 HSKYFCEFCGKFA 46 (92)
T ss_dssp HSCBCCTTTCSSC
T ss_pred hccccCcccCCCe
Confidence 4688999999875
No 49
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=26.64 E-value=21 Score=15.59 Aligned_cols=10 Identities=0% Similarity=-0.330 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 7 ~~~C~~C~k~ 16 (35)
T 1srk_A 7 PFVCRICLSA 16 (35)
T ss_dssp CEECSSSCCE
T ss_pred CeeCCCCCcc
Confidence 5889999874
No 50
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.14 E-value=14 Score=15.39 Aligned_cols=10 Identities=0% Similarity=-0.300 Sum_probs=7.3
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2lvt_A 2 PCQCVMCGKA 11 (29)
Confidence 3678888864
No 51
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.95 E-value=25 Score=15.44 Aligned_cols=10 Identities=10% Similarity=-0.297 Sum_probs=7.5
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 2 p~~C~~C~k~ 11 (33)
T 1rim_A 2 KFACPECPKR 11 (33)
T ss_dssp CCCCSSSCCC
T ss_pred cccCCCCCch
Confidence 3778888874
No 52
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.25 E-value=15 Score=15.26 Aligned_cols=10 Identities=0% Similarity=-0.237 Sum_probs=7.5
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (30)
T 2lvr_A 3 PYVCIHCQRQ 12 (30)
Confidence 4788888864
No 53
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=25.12 E-value=29 Score=21.05 Aligned_cols=13 Identities=0% Similarity=-0.396 Sum_probs=10.2
Q ss_pred cCCcccCCCCCcc
Q psy3162 15 CGKVLTYALDFVL 27 (91)
Q Consensus 15 ~~~~~C~~C~~~~ 27 (91)
-..|.|+.|++..
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3izc_m 34 HARYDCSFCGKKT 46 (92)
T ss_dssp HSCCCCSSSCSSC
T ss_pred hcCCcCCCCCCce
Confidence 3688999999764
No 54
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.09 E-value=23 Score=15.63 Aligned_cols=10 Identities=10% Similarity=-0.260 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2els_A 9 IFTCEYCNKV 18 (36)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCCCce
Confidence 5889999874
No 55
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.99 E-value=26 Score=20.70 Aligned_cols=11 Identities=0% Similarity=-0.469 Sum_probs=8.6
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
..|.|+.||..
T Consensus 26 ~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 26 EDHACPNCGED 36 (83)
T ss_dssp SCEECSSSCCE
T ss_pred ccCcCCCCCCc
Confidence 57888888874
No 56
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.96 E-value=23 Score=15.52 Aligned_cols=11 Identities=0% Similarity=-0.134 Sum_probs=8.4
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
..|.|+.|++.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2elt_A 8 KPYKCPQCSYA 18 (36)
T ss_dssp CSEECSSSSCE
T ss_pred CCCCCCCCCcc
Confidence 35889999874
No 57
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.32 E-value=25 Score=15.51 Aligned_cols=10 Identities=0% Similarity=-0.476 Sum_probs=7.9
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elv_A 9 LYDCHICERK 18 (36)
T ss_dssp CEECSSSCCE
T ss_pred CeECCCCCCc
Confidence 5889999864
No 58
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=24.30 E-value=38 Score=16.51 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=10.4
Q ss_pred CCcccCCCCCccee
Q psy3162 16 GKVLTYALDFVLST 29 (91)
Q Consensus 16 ~~~~C~~C~~~~~a 29 (91)
.-|+|+.||.-...
T Consensus 5 ~fY~C~~CGnivev 18 (36)
T 1dxg_A 5 DVYKCELCGQVVKV 18 (36)
T ss_dssp CEEECTTTCCEEEE
T ss_pred cEEEcCCCCcEEEE
Confidence 34899999886654
No 59
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.98 E-value=25 Score=15.64 Aligned_cols=10 Identities=20% Similarity=0.082 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elp_A 9 AMKCPYCDFY 18 (37)
T ss_dssp CEECSSSSCE
T ss_pred CeECCCCChh
Confidence 5889999864
No 60
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=23.51 E-value=24 Score=21.28 Aligned_cols=11 Identities=0% Similarity=-0.590 Sum_probs=8.8
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
=.|+|+.||+.
T Consensus 50 F~FkCP~CgEE 60 (95)
T 2k5c_A 50 FVFKCPVCGEE 60 (95)
T ss_dssp SEEECTTTCCE
T ss_pred HhhcCCCccHH
Confidence 35799999984
No 61
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=23.47 E-value=30 Score=21.47 Aligned_cols=13 Identities=15% Similarity=-0.291 Sum_probs=10.5
Q ss_pred cCCcccCCCCCcc
Q psy3162 15 CGKVLTYALDFVL 27 (91)
Q Consensus 15 ~~~~~C~~C~~~~ 27 (91)
-..|.|+.|++..
T Consensus 34 ~aky~CpfCgk~~ 46 (103)
T 4a17_Y 34 HAKYGCPFCGKVA 46 (103)
T ss_dssp HSCEECTTTCCEE
T ss_pred hcCCCCCCCCCce
Confidence 4689999999774
No 62
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.41 E-value=22 Score=20.14 Aligned_cols=12 Identities=0% Similarity=-0.108 Sum_probs=10.0
Q ss_pred CCcccCCCCCcc
Q psy3162 16 GKVLTYALDFVL 27 (91)
Q Consensus 16 ~~~~C~~C~~~~ 27 (91)
..|.|+.||+..
T Consensus 35 p~~~C~~CGE~~ 46 (78)
T 3ga8_A 35 HGLYCVHCEESI 46 (78)
T ss_dssp EEEEETTTCCEE
T ss_pred eeEECCCCCCEE
Confidence 589999999864
No 63
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=28 Score=15.33 Aligned_cols=10 Identities=0% Similarity=0.009 Sum_probs=8.0
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elq_A 9 PFKCSLCEYA 18 (36)
T ss_dssp SEECSSSSCE
T ss_pred CccCCCCCch
Confidence 5889999874
No 64
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.14 E-value=36 Score=17.47 Aligned_cols=11 Identities=18% Similarity=-0.055 Sum_probs=9.0
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
.+|+|+.|...
T Consensus 40 g~W~C~~C~~~ 50 (51)
T 1f62_A 40 GEWQCPACQPA 50 (51)
T ss_dssp SCCSCTTTSCC
T ss_pred CcEECcCcccc
Confidence 68999999754
No 65
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=21.65 E-value=92 Score=19.46 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=27.0
Q ss_pred ecccCCCeeEEEeeceEECCCCeeeecceEEec
Q psy3162 34 RLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEM 66 (91)
Q Consensus 34 ~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~ 66 (91)
.+...|.-+-|.|.|..-+....+.|+.+.|++
T Consensus 63 GirnvP~rIrVrlsRk~nededs~~klytlvt~ 95 (113)
T 3u5e_d 63 GVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEP 95 (113)
T ss_dssp CTTCCCSEEEEEEEEEECCSSCCSSSEEEEEEE
T ss_pred cccCCCceEEEEEEEecCCCCCCccccEEEEEE
Confidence 467889999999999987444678899999886
No 66
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.57 E-value=29 Score=15.67 Aligned_cols=10 Identities=0% Similarity=-0.433 Sum_probs=7.8
Q ss_pred CcccCCCCCc
Q psy3162 17 KVLTYALDFV 26 (91)
Q Consensus 17 ~~~C~~C~~~ 26 (91)
.|.|+.|++.
T Consensus 6 ~~~C~~C~k~ 15 (39)
T 1njq_A 6 SYTCSFCKRE 15 (39)
T ss_dssp SEECTTTCCE
T ss_pred ceECCCCCcc
Confidence 4789999864
No 67
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=9.3 Score=25.39 Aligned_cols=18 Identities=11% Similarity=-0.145 Sum_probs=10.5
Q ss_pred cccCCCCCcceeEEEeec
Q psy3162 18 VLTYALDFVLSTLRTTRL 35 (91)
Q Consensus 18 ~~C~~C~~~~~a~k~~~~ 35 (91)
.+|.+||..+....+.+|
T Consensus 127 l~C~ACGa~~~V~~~~Kl 144 (157)
T 2e9h_A 127 NSCKACGYRGMLDTHHKL 144 (157)
T ss_dssp EECSSSCCEEECCCCSSH
T ss_pred EEccCCCCCCcccchhhh
Confidence 467777776654443333
No 68
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.83 E-value=22 Score=15.80 Aligned_cols=11 Identities=0% Similarity=-0.321 Sum_probs=8.2
Q ss_pred CCcccCCCCCc
Q psy3162 16 GKVLTYALDFV 26 (91)
Q Consensus 16 ~~~~C~~C~~~ 26 (91)
..|.|+.|++.
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elo_A 8 RSYSCPVCEKS 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred CCcCCCCCCCc
Confidence 35889999864
No 69
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=35 Score=18.39 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=9.6
Q ss_pred CCcccCCCCCcc
Q psy3162 16 GKVLTYALDFVL 27 (91)
Q Consensus 16 ~~~~C~~C~~~~ 27 (91)
..|.|++|+..-
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 578999999753
No 70
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.54 E-value=37 Score=18.57 Aligned_cols=17 Identities=6% Similarity=-0.244 Sum_probs=12.1
Q ss_pred cCCcccCCCCCcceeEE
Q psy3162 15 CGKVLTYALDFVLSTLR 31 (91)
Q Consensus 15 ~~~~~C~~C~~~~~a~k 31 (91)
-+-|+|..|++...-..
T Consensus 9 eD~WkC~~C~k~N~Pl~ 25 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSK 25 (53)
T ss_dssp SCCEECSSSCCEECSSC
T ss_pred cceeecccccccCCCcc
Confidence 36799999997655433
No 71
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.20 E-value=39 Score=15.79 Aligned_cols=11 Identities=0% Similarity=-0.294 Sum_probs=8.4
Q ss_pred cccCCCCCcce
Q psy3162 18 VLTYALDFVLS 28 (91)
Q Consensus 18 ~~C~~C~~~~~ 28 (91)
-.|+.|++..-
T Consensus 4 ~~C~~C~k~Vy 14 (31)
T 1zfo_A 4 PNCARCGKIVY 14 (31)
T ss_dssp CBCSSSCSBCC
T ss_pred CcCCccCCEEe
Confidence 47899998763
No 72
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=20.12 E-value=1.1e+02 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=26.5
Q ss_pred ecccCCCeeEEEeeceEECCCCeeeecceEEec
Q psy3162 34 RLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEM 66 (91)
Q Consensus 34 ~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~ 66 (91)
.+...|.-+-|.|.|...+....+.|+.+.|++
T Consensus 62 GirnvP~rIrVrlsRk~nededs~~klytlvt~ 94 (111)
T 4a17_W 62 GIRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQH 94 (111)
T ss_dssp CSSSCCSEEEEEEEEEECCCSSCSSSEEEEEEE
T ss_pred cccCCCcEEEEEEEEecCCCCCCCCCcEEEEEE
Confidence 467889999999999987434567899888875
Done!