Your job contains 1 sequence.
>psy3162
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKL
DVEVEMPDTIDLTPLRGSGPQPGEEMLPEVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3162
(91 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1N3P2 - symbol:USP5 "Ubiquitin carboxyl-termin... 203 4.0e-15 1
UNIPROTKB|P45974 - symbol:USP5 "Ubiquitin carboxyl-termin... 203 4.0e-15 1
MGI|MGI:1347343 - symbol:Usp5 "ubiquitin specific peptida... 203 4.0e-15 1
RGD|1308438 - symbol:Usp5 "ubiquitin specific peptidase 5... 203 4.0e-15 1
UNIPROTKB|F1SLU6 - symbol:USP5 "Ubiquitin carboxyl-termin... 203 4.0e-15 1
UNIPROTKB|F1P9P5 - symbol:USP5 "Ubiquitin carboxyl-termin... 203 4.0e-15 1
TAIR|locus:2083440 - symbol:UBP14 "ubiquitin-specific pro... 196 2.0e-14 1
UNIPROTKB|E1C8W4 - symbol:USP5 "Ubiquitin carboxyl-termin... 192 5.7e-14 1
UNIPROTKB|H7C5J3 - symbol:USP13 "Ubiquitin carboxyl-termi... 179 1.3e-13 1
UNIPROTKB|F1SGC5 - symbol:USP13 "Uncharacterized protein"... 179 4.6e-13 1
UNIPROTKB|E1BY77 - symbol:USP13 "Ubiquitin carboxyl-termi... 183 5.5e-13 1
MGI|MGI:1919857 - symbol:Usp13 "ubiquitin specific peptid... 180 1.1e-12 1
UNIPROTKB|E1BMF7 - symbol:USP13 "Ubiquitin carboxyl-termi... 180 1.2e-12 1
UNIPROTKB|E2R7B0 - symbol:USP13 "Ubiquitin carboxyl-termi... 179 1.5e-12 1
UNIPROTKB|Q92995 - symbol:USP13 "Ubiquitin carboxyl-termi... 179 1.5e-12 1
UNIPROTKB|F6V6I0 - symbol:usp13 "Ubiquitin carboxyl-termi... 176 3.0e-12 1
FB|FBgn0035402 - symbol:CG12082 species:7227 "Drosophila ... 175 3.7e-12 1
ZFIN|ZDB-GENE-040426-2584 - symbol:usp5 "ubiquitin specif... 167 2.8e-11 1
DICTYBASE|DDB_G0291239 - symbol:ubpA "putative ubiquitin ... 144 7.8e-09 1
RGD|1306044 - symbol:Usp13 "ubiquitin specific peptidase ... 131 1.9e-07 1
WB|WBGene00020839 - symbol:usp-5 species:6239 "Caenorhabd... 118 4.4e-06 1
>UNIPROTKB|F1N3P2 [details] [associations]
symbol:USP5 "Ubiquitin carboxyl-terminal hydrolase"
species:9913 "Bos taurus" [GO:0071108 "protein K48-linked
deubiquitination" evidence=IEA] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0046872 GO:GO:0008270 GO:GO:0008234
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0032436 GO:GO:0071108
SUPFAM:SSF46934 GO:GO:0008242 GO:GO:0004221
GeneTree:ENSGT00390000000874 OMA:DDMVEDP EMBL:DAAA02014455
IPI:IPI01000235 UniGene:Bt.7631 Ensembl:ENSBTAT00000026356
NextBio:20867059 Uniprot:F1N3P2
Length = 858
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616
Query: 90 VA 91
+A
Sbjct: 617 IA 618
>UNIPROTKB|P45974 [details] [associations]
symbol:USP5 "Ubiquitin carboxyl-terminal hydrolase 5"
species:9606 "Homo sapiens" [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0008242 "omega peptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0071108 "protein K48-linked deubiquitination" evidence=IMP]
[GO:0005764 "lysosome" evidence=TAS] [GO:0004197 "cysteine-type
endopeptidase activity" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR009060 InterPro:IPR016652
InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627 Pfam:PF02148
PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235
PROSITE:PS50271 SMART:SM00290 GO:GO:0046872 GO:GO:0008270
GO:GO:0005764 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH471116 GO:GO:0006511
GO:GO:0032436 GO:GO:0071108 SUPFAM:SSF46934 GO:GO:0004197
EMBL:U47924 GO:GO:0008242 GO:GO:0004221 PDB:2G45 PDB:3IHP
PDBsum:2G45 PDBsum:3IHP KO:K11836 eggNOG:COG5207
HOGENOM:HOG000162311 HOVERGEN:HBG002833 OMA:DDMVEDP EMBL:X91349
EMBL:U47927 EMBL:U35116 EMBL:BC004889 EMBL:BC005139 IPI:IPI00024664
IPI:IPI00375145 PIR:S68227 RefSeq:NP_001092006.1 RefSeq:NP_003472.2
UniGene:Hs.631661 PDB:2DAG PDB:2DAK PDB:2G43 PDBsum:2DAG
PDBsum:2DAK PDBsum:2G43 ProteinModelPortal:P45974 SMR:P45974
IntAct:P45974 MINT:MINT-5001006 STRING:P45974 MEROPS:C19.001
PhosphoSite:P45974 DMDM:1717869 REPRODUCTION-2DPAGE:IPI00375145
PaxDb:P45974 PRIDE:P45974 DNASU:8078 Ensembl:ENST00000229268
Ensembl:ENST00000389231 GeneID:8078 KEGG:hsa:8078 UCSC:uc001qrh.4
UCSC:uc001qri.4 CTD:8078 GeneCards:GC12P007024 HGNC:HGNC:12628
HPA:HPA006756 MIM:601447 neXtProt:NX_P45974 PharmGKB:PA37253
InParanoid:P45974 OrthoDB:EOG4229J2 PhylomeDB:P45974
ChEMBL:CHEMBL6158 ChiTaRS:USP5 EvolutionaryTrace:P45974
GenomeRNAi:8078 NextBio:30687 PMAP-CutDB:P45974 ArrayExpress:P45974
Bgee:P45974 CleanEx:HS_USP5 Genevestigator:P45974
GermOnline:ENSG00000111667 Uniprot:P45974
Length = 858
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616
Query: 90 VA 91
+A
Sbjct: 617 IA 618
>MGI|MGI:1347343 [details] [associations]
symbol:Usp5 "ubiquitin specific peptidase 5 (isopeptidase
T)" species:10090 "Mus musculus" [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008234
"cysteine-type peptidase activity" evidence=IEA] [GO:0008242 "omega
peptidase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032436 "positive regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071108 "protein K48-linked
deubiquitination" evidence=ISO] InterPro:IPR000449
InterPro:IPR001394 InterPro:IPR001607 InterPro:IPR009060
InterPro:IPR016652 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
Pfam:PF02148 PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973
PROSITE:PS50235 PROSITE:PS50271 SMART:SM00290 MGI:MGI:1347343
GO:GO:0046872 GO:GO:0008270 GO:GO:0008234 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006511 GO:GO:0032436 GO:GO:0071108 SUPFAM:SSF46934
EMBL:AC002397 GO:GO:0008242 GO:GO:0004221
GeneTree:ENSGT00390000000874 KO:K11836 eggNOG:COG5207
HOGENOM:HOG000162311 HOVERGEN:HBG002833 OMA:DDMVEDP MEROPS:C19.001
CTD:8078 ChiTaRS:USP5 EMBL:BC066993 IPI:IPI00113214
RefSeq:NP_038728.1 UniGene:Mm.3571 ProteinModelPortal:P56399
SMR:P56399 MINT:MINT-220667 STRING:P56399 PhosphoSite:P56399
PaxDb:P56399 PRIDE:P56399 Ensembl:ENSMUST00000047510 GeneID:22225
KEGG:mmu:22225 UCSC:uc009dsa.1 InParanoid:P56399 NextBio:302251
Bgee:P56399 CleanEx:MM_USP5 Genevestigator:P56399
GermOnline:ENSMUSG00000038429 Uniprot:P56399
Length = 858
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616
Query: 90 VA 91
+A
Sbjct: 617 IA 618
>RGD|1308438 [details] [associations]
symbol:Usp5 "ubiquitin specific peptidase 5 (isopeptidase T)"
species:10116 "Rattus norvegicus" [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008234 "cysteine-type peptidase activity" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032436 "positive regulation
of proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO] [GO:0071108 "protein K48-linked deubiquitination"
evidence=IEA;ISO] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR009060 InterPro:IPR016652
InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627 Pfam:PF02148
PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235
PROSITE:PS50271 SMART:SM00290 RGD:1308438 GO:GO:0046872
GO:GO:0008270 GO:GO:0008234 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0032436 GO:GO:0071108 SUPFAM:SSF46934 GO:GO:0008242
GO:GO:0004221 EMBL:CH473964 GeneTree:ENSGT00390000000874 KO:K11836
OMA:DDMVEDP CTD:8078 OrthoDB:EOG4229J2 IPI:IPI00207657
RefSeq:NP_001100089.1 UniGene:Rn.44078 Ensembl:ENSRNOT00000020785
GeneID:297593 KEGG:rno:297593 UCSC:RGD:1308438 NextBio:642447
Uniprot:D3ZVQ0
Length = 858
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616
Query: 90 VA 91
+A
Sbjct: 617 IA 618
>UNIPROTKB|F1SLU6 [details] [associations]
symbol:USP5 "Ubiquitin carboxyl-terminal hydrolase"
species:9823 "Sus scrofa" [GO:0071108 "protein K48-linked
deubiquitination" evidence=IEA] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0046872 GO:GO:0008270 GO:GO:0008234
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0032436 GO:GO:0071108
SUPFAM:SSF46934 GO:GO:0008242 GO:GO:0004221
GeneTree:ENSGT00390000000874 OMA:DDMVEDP EMBL:FP325257
Ensembl:ENSSSCT00000000745 Uniprot:F1SLU6
Length = 859
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 558 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 617
Query: 90 VA 91
+A
Sbjct: 618 IA 619
>UNIPROTKB|F1P9P5 [details] [associations]
symbol:USP5 "Ubiquitin carboxyl-terminal hydrolase"
species:9615 "Canis lupus familiaris" [GO:0008234 "cysteine-type
peptidase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008242 "omega peptidase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR009060 InterPro:IPR016652
InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627 Pfam:PF02148
PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235
PROSITE:PS50271 SMART:SM00290 GO:GO:0046872 GO:GO:0008270
GO:GO:0008234 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 SUPFAM:SSF46934
GO:GO:0008242 GO:GO:0004221 GeneTree:ENSGT00390000000874
OMA:DDMVEDP EMBL:AAEX03015272 Ensembl:ENSCAFT00000023250
Uniprot:F1P9P5
Length = 868
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
++TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct: 590 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 649
Query: 90 VA 91
+A
Sbjct: 650 IA 651
>TAIR|locus:2083440 [details] [associations]
symbol:UBP14 "ubiquitin-specific protease 14"
species:3702 "Arabidopsis thaliana" [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISS;IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008242 "omega peptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0016579
"protein deubiquitination" evidence=IDA] [GO:0048767 "root hair
elongation" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0005829 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0048767 GO:GO:0009793
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 SUPFAM:SSF46934 GO:GO:0008242
GO:GO:0004843 GO:GO:0016579 GO:GO:0004221 EMBL:AP002034
EMBL:AP000410 KO:K11836 eggNOG:COG5207 HOGENOM:HOG000162311
EMBL:AF302664 EMBL:AY140096 EMBL:AK226894 IPI:IPI00525815
RefSeq:NP_566666.2 UniGene:At.16942 PDB:1VEK PDB:1WIV PDBsum:1VEK
PDBsum:1WIV ProteinModelPortal:Q8L6Y1 SMR:Q8L6Y1 STRING:Q8L6Y1
MEROPS:C19.084 PaxDb:Q8L6Y1 PRIDE:Q8L6Y1 DNASU:821610
EnsemblPlants:AT3G20630.1 GeneID:821610 KEGG:ath:AT3G20630
TAIR:At3g20630 InParanoid:Q8L6Y1 OMA:DDMVEDP PhylomeDB:Q8L6Y1
ProtClustDB:CLSN2690557 EvolutionaryTrace:Q8L6Y1
Genevestigator:Q8L6Y1 Uniprot:Q8L6Y1
Length = 797
Score = 196 (74.1 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + + ++TT L SFPDYL+ H++KF M+E W KLDV +++PD ID++ +R G Q
Sbjct: 533 ALKGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQ 592
Query: 82 PGEEMLPE 89
PGEE+LP+
Sbjct: 593 PGEELLPD 600
>UNIPROTKB|E1C8W4 [details] [associations]
symbol:USP5 "Ubiquitin carboxyl-terminal hydrolase"
species:9031 "Gallus gallus" [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0008242 "omega peptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0071108 "protein K48-linked deubiquitination" evidence=IEA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0046872 GO:GO:0008270 GO:GO:0008234
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0032436 GO:GO:0071108
SUPFAM:SSF46934 GO:GO:0008242 GO:GO:0004221
GeneTree:ENSGT00390000000874 OMA:DDMVEDP EMBL:AADN02061118
EMBL:AADN02061119 IPI:IPI00579016 Ensembl:ENSGALT00000023441
Uniprot:E1C8W4
Length = 833
Score = 192 (72.6 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
L+TTR ASFPDYL+ +KKFT DW KLDV +EMP+ +D++ L+G+G Q GEE +P+
Sbjct: 555 LKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISALQGTGLQDGEEEMPD 614
Query: 90 VA 91
+A
Sbjct: 615 IA 616
>UNIPROTKB|H7C5J3 [details] [associations]
symbol:USP13 "Ubiquitin carboxyl-terminal hydrolase 13"
species:9606 "Homo sapiens" [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR001394 Pfam:PF00443
PROSITE:PS50235 GO:GO:0006511 GO:GO:0004221 EMBL:AC007687
EMBL:AC125604 HGNC:HGNC:12611 ProteinModelPortal:H7C5J3
Ensembl:ENST00000497155 Bgee:H7C5J3 Uniprot:H7C5J3
Length = 299
Score = 179 (68.1 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D+ LR G Q
Sbjct: 207 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 266
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 267 PGEEELPDIS 276
>UNIPROTKB|F1SGC5 [details] [associations]
symbol:USP13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR009060 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
PROSITE:PS00973 PROSITE:PS50235 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0006511 SUPFAM:SSF46934 GO:GO:0004221
GeneTree:ENSGT00390000000874 EMBL:CU695053 EMBL:CU861911
Ensembl:ENSSSCT00000012876 OMA:RESNANR Uniprot:F1SGC5
Length = 436
Score = 179 (68.1 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D+ LR G Q
Sbjct: 134 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 193
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 194 PGEEELPDIS 203
>UNIPROTKB|E1BY77 [details] [associations]
symbol:USP13 "Ubiquitin carboxyl-terminal hydrolase 13"
species:9031 "Gallus gallus" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008242 "omega
peptidase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006914 "autophagy" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008283 "cell proliferation" evidence=ISS] [GO:0010506
"regulation of autophagy" evidence=ISS] [GO:0050821 "protein
stabilization" evidence=ISS] [GO:0070536 "protein K63-linked
deubiquitination" evidence=ISS] [GO:0004197 "cysteine-type
endopeptidase activity" evidence=ISS] [GO:0004221 "ubiquitin
thiolesterase activity" evidence=ISS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISS] [GO:0043130
"ubiquitin binding" evidence=ISS] InterPro:IPR000449
InterPro:IPR001394 InterPro:IPR001607 InterPro:IPR009060
InterPro:IPR016652 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
Pfam:PF02148 PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973
PROSITE:PS50235 PROSITE:PS50271 SMART:SM00290 GO:GO:0050821
GO:GO:0006355 GO:GO:0046872 GO:GO:0008283 GO:GO:0008270
GO:GO:0006914 GO:GO:0010506 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0070536 GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0004197
GO:GO:0008242 GO:GO:0004843 GO:GO:0004221 CTD:8975
GeneTree:ENSGT00390000000874 KO:K11836 OMA:PQQNGIS
EMBL:AADN02020803 EMBL:AADN02020804 EMBL:AADN02020805
EMBL:AADN02020806 IPI:IPI00582057 RefSeq:XP_426842.2
ProteinModelPortal:E1BY77 Ensembl:ENSGALT00000014487 GeneID:429286
KEGG:gga:429286 NextBio:20830031 Uniprot:E1BY77
Length = 862
Score = 183 (69.5 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP YL+ +KKFT DW KLDV ++MPD +D++ LR G Q
Sbjct: 556 ALQAKSAGVKTSRFASFPQYLVVQIKKFTFGLDWIPKKLDVSIDMPDFLDISHLRAMGLQ 615
Query: 82 PGEEMLPEVA 91
PGEE LP++A
Sbjct: 616 PGEEELPDIA 625
>MGI|MGI:1919857 [details] [associations]
symbol:Usp13 "ubiquitin specific peptidase 13 (isopeptidase
T-3)" species:10090 "Mus musculus" [GO:0004197 "cysteine-type
endopeptidase activity" evidence=ISO] [GO:0004221 "ubiquitin
thiolesterase activity" evidence=ISO] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0006914 "autophagy"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008234 "cysteine-type peptidase activity" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0010506 "regulation of autophagy" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0050821 "protein stabilization" evidence=ISO]
[GO:0070536 "protein K63-linked deubiquitination" evidence=ISO]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 MGI:MGI:1919857 GO:GO:0050821 GO:GO:0006355
GO:GO:0046872 GO:GO:0008283 GO:GO:0008270 GO:GO:0006914
GO:GO:0010506 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0070536
GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0004197 GO:GO:0008242
GO:GO:0004843 GO:GO:0004221 EMBL:CH466530 CTD:8975
GeneTree:ENSGT00390000000874 KO:K11836 OMA:PQQNGIS MEROPS:C19.012
eggNOG:COG5207 HOGENOM:HOG000162311 HOVERGEN:HBG002833
OrthoDB:EOG46DM24 EMBL:AC111140 EMBL:BC090999 IPI:IPI00134255
RefSeq:NP_001013042.1 UniGene:Mm.316153 ProteinModelPortal:Q5BKP2
SMR:Q5BKP2 PhosphoSite:Q5BKP2 PaxDb:Q5BKP2 PRIDE:Q5BKP2
Ensembl:ENSMUST00000072312 GeneID:72607 KEGG:mmu:72607
UCSC:uc008owr.1 InParanoid:Q5BKP2 NextBio:336585 Bgee:Q5BKP2
Genevestigator:Q5BKP2 Uniprot:Q5BKP2
Length = 858
Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D++ LR G Q
Sbjct: 559 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQ 618
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 619 PGEEELPDIS 628
>UNIPROTKB|E1BMF7 [details] [associations]
symbol:USP13 "Ubiquitin carboxyl-terminal hydrolase 13"
species:9913 "Bos taurus" [GO:0043130 "ubiquitin binding"
evidence=ISS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=ISS] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=ISS] [GO:0004197 "cysteine-type endopeptidase activity"
evidence=ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISS] [GO:0050821 "protein stabilization" evidence=ISS]
[GO:0010506 "regulation of autophagy" evidence=ISS] [GO:0008283
"cell proliferation" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0006914 "autophagy"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0050821 GO:GO:0006355 GO:GO:0046872
GO:GO:0008283 GO:GO:0008270 GO:GO:0006914 GO:GO:0010506
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0070536 GO:GO:0043130
SUPFAM:SSF46934 GO:GO:0004197 GO:GO:0008242 GO:GO:0004843
GO:GO:0004221 EMBL:DAAA02001954 EMBL:DAAA02001955 EMBL:DAAA02001956
EMBL:DAAA02001957 EMBL:DAAA02001958 IPI:IPI00704433
RefSeq:NP_001178195.1 UniGene:Bt.74584 Ensembl:ENSBTAT00000061390
GeneID:100141289 KEGG:bta:100141289 CTD:8975
GeneTree:ENSGT00390000000874 KO:K11836 OMA:PQQNGIS NextBio:20791338
Uniprot:E1BMF7
Length = 863
Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV V+MPD +D+ LR G Q
Sbjct: 561 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSVDMPDLLDINHLRARGLQ 620
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 621 PGEEELPDIS 630
>UNIPROTKB|E2R7B0 [details] [associations]
symbol:USP13 "Ubiquitin carboxyl-terminal hydrolase"
species:9615 "Canis lupus familiaris" [GO:0008234 "cysteine-type
peptidase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008242 "omega peptidase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR009060 InterPro:IPR016652
InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627 Pfam:PF02148
PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235
PROSITE:PS50271 SMART:SM00290 GO:GO:0046872 GO:GO:0008270
GO:GO:0008234 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 SUPFAM:SSF46934
GO:GO:0008242 GO:GO:0004221 CTD:8975 GeneTree:ENSGT00390000000874
KO:K11836 OMA:PQQNGIS EMBL:AAEX03017257 EMBL:AAEX03017258
RefSeq:XP_003434175.2 Ensembl:ENSCAFT00000018199 GeneID:478640
KEGG:cfa:478640 NextBio:20853946 Uniprot:E2R7B0
Length = 863
Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D+ LR G Q
Sbjct: 561 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 620
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 621 PGEEELPDIS 630
>UNIPROTKB|Q92995 [details] [associations]
symbol:USP13 "Ubiquitin carboxyl-terminal hydrolase 13"
species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008242 "omega
peptidase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006914 "autophagy" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IPI] [GO:0043130
"ubiquitin binding" evidence=IDA] [GO:0050821 "protein
stabilization" evidence=IDA] [GO:0030318 "melanocyte
differentiation" evidence=TAS] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IDA] [GO:0004843 "ubiquitin-specific protease
activity" evidence=IDA] [GO:0004197 "cysteine-type endopeptidase
activity" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070536 "protein K63-linked deubiquitination" evidence=IDA]
[GO:0010506 "regulation of autophagy" evidence=IDA]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0050821 GO:GO:0006355 GO:GO:0046872
GO:GO:0008283 EMBL:CH471052 GO:GO:0008270 GO:GO:0006914
GO:GO:0010506 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0070536
GO:GO:0030318 GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0004197
GO:GO:0008242 GO:GO:0004843 GO:GO:0004221 EMBL:AC007687 CTD:8975
KO:K11836 OMA:PQQNGIS EMBL:U75362 EMBL:AK290338 EMBL:AK302404
EMBL:AC125604 EMBL:BC016146 IPI:IPI00024401 IPI:IPI00947195
RefSeq:NP_003931.2 UniGene:Hs.175322 PDB:2L80 PDB:2LBC PDBsum:2L80
PDBsum:2LBC ProteinModelPortal:Q92995 SMR:Q92995 IntAct:Q92995
MINT:MINT-1195142 STRING:Q92995 MEROPS:C19.012 PhosphoSite:Q92995
DMDM:209572692 PaxDb:Q92995 PRIDE:Q92995 DNASU:8975
Ensembl:ENST00000263966 Ensembl:ENST00000496897 GeneID:8975
KEGG:hsa:8975 UCSC:uc003fkh.3 GeneCards:GC03P179370
H-InvDB:HIX0003883 HGNC:HGNC:12611 HPA:HPA004827 MIM:603591
neXtProt:NX_Q92995 PharmGKB:PA37237 eggNOG:COG5207
HOGENOM:HOG000162311 HOVERGEN:HBG002833 InParanoid:Q92995
OrthoDB:EOG46DM24 PhylomeDB:Q92995 GenomeRNAi:8975 NextBio:33685
ArrayExpress:Q92995 Bgee:Q92995 CleanEx:HS_USP13
Genevestigator:Q92995 GermOnline:ENSG00000058056 Uniprot:Q92995
Length = 863
Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW K DV ++MPD +D+ LR G Q
Sbjct: 561 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 620
Query: 82 PGEEMLPEVA 91
PGEE LP+++
Sbjct: 621 PGEEELPDIS 630
>UNIPROTKB|F6V6I0 [details] [associations]
symbol:usp13 "Ubiquitin carboxyl-terminal hydrolase 13"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0004197
"cysteine-type endopeptidase activity" evidence=ISS] [GO:0004221
"ubiquitin thiolesterase activity" evidence=ISS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008283 "cell proliferation" evidence=ISS] [GO:0010506
"regulation of autophagy" evidence=ISS] [GO:0043130 "ubiquitin
binding" evidence=ISS] [GO:0050821 "protein stabilization"
evidence=ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISS] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0050821 GO:GO:0006355 GO:GO:0046872
GO:GO:0008283 GO:GO:0008270 GO:GO:0006914 GO:GO:0010506
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0070536 GO:GO:0043130
GO:GO:0004197 GO:GO:0008242 GO:GO:0004843 GO:GO:0004221
EMBL:AAMC01001929 EMBL:AAMC01001930 EMBL:AAMC01001931
EMBL:AAMC01001932 EMBL:AAMC01001933 EMBL:AAMC01001934
Uniprot:F6V6I0
Length = 846
Score = 176 (67.0 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R ASFP+YL+ +KKFT DW KLDV ++MPD +D+ LR +G +
Sbjct: 542 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATGLK 601
Query: 82 PGEEMLPEVA 91
GEE LP++A
Sbjct: 602 SGEEELPDIA 611
>FB|FBgn0035402 [details] [associations]
symbol:CG12082 species:7227 "Drosophila melanogaster"
[GO:0016579 "protein deubiquitination" evidence=TAS] [GO:0004221
"ubiquitin thiolesterase activity" evidence=IEA;TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008242 "omega
peptidase activity" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] InterPro:IPR000449 InterPro:IPR001394
InterPro:IPR001607 InterPro:IPR009060 InterPro:IPR016652
InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627 Pfam:PF02148
PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235
PROSITE:PS50271 SMART:SM00290 EMBL:AE014296 GO:GO:0046872
GO:GO:0008270 GO:GO:0008234 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
SUPFAM:SSF46934 GO:GO:0008242 GO:GO:0004221
GeneTree:ENSGT00390000000874 KO:K11836 eggNOG:COG5207 OMA:DDMVEDP
EMBL:AY121697 RefSeq:NP_001246589.1 RefSeq:NP_647773.1
UniGene:Dm.11718 SMR:Q9VZU7 IntAct:Q9VZU7 MINT:MINT-767355
STRING:Q9VZU7 MEROPS:C19.A28 EnsemblMetazoa:FBtr0073114
EnsemblMetazoa:FBtr0307308 GeneID:38375 KEGG:dme:Dmel_CG12082
UCSC:CG12082-RA FlyBase:FBgn0035402 InParanoid:Q9VZU7
OrthoDB:EOG4NGF2M GenomeRNAi:38375 NextBio:808307 Uniprot:Q9VZU7
Length = 827
Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 31 RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGP-QPGEEMLPE 89
+ TRLA+ PD LM H+ KFT+ +DW KLDV V+MPD +DL+ R +G QPGEE LPE
Sbjct: 560 KITRLATMPDCLMIHVGKFTLGDDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPE 619
Query: 90 VA 91
A
Sbjct: 620 PA 621
>ZFIN|ZDB-GENE-040426-2584 [details] [associations]
symbol:usp5 "ubiquitin specific protease 5"
species:7955 "Danio rerio" [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA;ISS] [GO:0008242 "omega peptidase activity"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0010506
"regulation of autophagy" evidence=ISS] [GO:0043130 "ubiquitin
binding" evidence=ISS] [GO:0004197 "cysteine-type endopeptidase
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0070536 "protein K63-linked deubiquitination"
evidence=ISS] [GO:0050821 "protein stabilization" evidence=ISS]
[GO:0004843 "ubiquitin-specific protease activity" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006914 "autophagy" evidence=IEA] InterPro:IPR000449
InterPro:IPR001394 InterPro:IPR001607 InterPro:IPR009060
InterPro:IPR016652 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
Pfam:PF02148 PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973
PROSITE:PS50235 PROSITE:PS50271 SMART:SM00290
ZFIN:ZDB-GENE-040426-2584 GO:GO:0050821 GO:GO:0006355 GO:GO:0046872
GO:GO:0008283 GO:GO:0008270 GO:GO:0006914 GO:GO:0010506
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0009953 GO:GO:0070536
GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0004197 GO:GO:0008242
GO:GO:0004843 GO:GO:0004221 CTD:8975 GeneTree:ENSGT00390000000874
KO:K11836 OMA:PQQNGIS EMBL:AL928701 EMBL:CU459215 EMBL:BC141800
IPI:IPI00636029 RefSeq:NP_001091856.1 UniGene:Dr.115281
Ensembl:ENSDART00000065293 GeneID:558011 KEGG:dre:558011
NextBio:20882266 ArrayExpress:F1QFS9 Bgee:F1QFS9 Uniprot:F1QFS9
Length = 860
Score = 167 (63.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
AL + ++T+R A+FP+Y++ LKKFT DW KLD+ V++PD +DL LR +G Q
Sbjct: 544 ALQAKSAGVKTSRFATFPEYMIVQLKKFTFGVDWVPKKLDMSVDVPDFLDLNRLRATGLQ 603
Query: 82 PGEEMLPEV 90
GEE LP++
Sbjct: 604 AGEEELPDL 612
>DICTYBASE|DDB_G0291239 [details] [associations]
symbol:ubpA "putative ubiquitin carboxyl-terminal
hydrolase (UCH)" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008242 "omega
peptidase activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] InterPro:IPR000449
InterPro:IPR001394 InterPro:IPR001607 InterPro:IPR009060
InterPro:IPR016652 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
Pfam:PF02148 PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973
PROSITE:PS50235 PROSITE:PS50271 SMART:SM00290
dictyBase:DDB_G0291239 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0008234 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006511 SUPFAM:SSF46934 GO:GO:0008242 GO:GO:0004221 KO:K11836
eggNOG:COG5207 EMBL:U48271 RefSeq:XP_635198.2
ProteinModelPortal:P54201 SMR:P54201 MEROPS:C19.104 GeneID:8628143
KEGG:ddi:DDB_G0291239 ProtClustDB:CLSZ2429562 Uniprot:P54201
Length = 837
Score = 144 (55.7 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 29 TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLP 88
+L ++R+A+FP+ L+ HLKK+T D+T KL+V +++PD ID+ LRG G + GE L
Sbjct: 555 SLNSSRMATFPEVLIIHLKKYTYNADYTPKKLNVFMDVPDIIDIDSLRGRGIKEGEVPLK 614
Query: 89 E 89
E
Sbjct: 615 E 615
>RGD|1306044 [details] [associations]
symbol:Usp13 "ubiquitin specific peptidase 13" species:10116
"Rattus norvegicus" [GO:0004197 "cysteine-type endopeptidase
activity" evidence=ISO] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA;ISO] [GO:0004843 "ubiquitin-specific
protease activity" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008234 "cysteine-type peptidase activity" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0010506 "regulation of autophagy" evidence=ISO]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043130 "ubiquitin binding" evidence=ISO] [GO:0050821 "protein
stabilization" evidence=ISO] [GO:0070536 "protein K63-linked
deubiquitination" evidence=ISO] InterPro:IPR000449
InterPro:IPR001394 InterPro:IPR001607 InterPro:IPR009060
InterPro:IPR016652 InterPro:IPR018200 Pfam:PF00443 Pfam:PF00627
Pfam:PF02148 PIRSF:PIRSF016308 PROSITE:PS00972 PROSITE:PS00973
PROSITE:PS50235 PROSITE:PS50271 SMART:SM00290 RGD:1306044
GO:GO:0050821 GO:GO:0006355 GO:GO:0046872 GO:GO:0008283
GO:GO:0008270 GO:GO:0010506 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0070536 SUPFAM:SSF46934 GO:GO:0004197 GO:GO:0008242
GO:GO:0004843 GO:GO:0004221 GeneTree:ENSGT00390000000874
OrthoDB:EOG46DM24 IPI:IPI00557979 Ensembl:ENSRNOT00000048030
UCSC:RGD:1306044 ArrayExpress:D3ZDI9 Uniprot:D3ZDI9
Length = 835
Score = 131 (51.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 32 TTRLASFPDY-LMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEV 90
T R + P Y + ++K F++ DW K DV ++MPD +D++ LR G QPGEE LP++
Sbjct: 570 THRFSLVPQYNTVQYVKGFSLGLDWVPRKFDVSIDMPDLLDISHLRARGLQPGEEELPDI 629
Query: 91 A 91
+
Sbjct: 630 S 630
>WB|WBGene00020839 [details] [associations]
symbol:usp-5 species:6239 "Caenorhabditis elegans"
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008242 "omega peptidase activity" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000449 InterPro:IPR001394 InterPro:IPR001607
InterPro:IPR009060 InterPro:IPR016652 InterPro:IPR018200
Pfam:PF00443 Pfam:PF00627 Pfam:PF02148 PIRSF:PIRSF016308
PROSITE:PS00972 PROSITE:PS00973 PROSITE:PS50235 PROSITE:PS50271
SMART:SM00290 GO:GO:0040010 GO:GO:0046872 GO:GO:0008270
GO:GO:0008234 GO:GO:0040011 GO:GO:0040017 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0040035 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 SUPFAM:SSF46934 GO:GO:0008242
GO:GO:0004221 EMBL:FO081496 GeneTree:ENSGT00390000000874 KO:K11836
eggNOG:COG5207 HOGENOM:HOG000162311 OMA:DDMVEDP PIR:T25921
RefSeq:NP_491765.2 ProteinModelPortal:P91502 SMR:P91502
MEROPS:C19.A41 PaxDb:P91502 EnsemblMetazoa:T27A3.2 GeneID:172296
KEGG:cel:CELE_T27A3.2 UCSC:T27A3.2 CTD:172296 WormBase:T27A3.2
InParanoid:P91502 NextBio:874887 Uniprot:P91502
Length = 789
Score = 118 (46.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 32 TTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
T + +FPDYL F + KF D T KLD+E+E+ + +DL+ RG G E LP+
Sbjct: 523 TISMKTFPDYLFFQVSKFAYNVDGTQKKLDMELEIEEELDLSGYRGHGKLEHEIALPD 580
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 91 91 0.00091 102 3 11 22 0.49 29
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 541 (58 KB)
Total size of DFA: 106 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 11.19u 0.08s 11.27t Elapsed: 00:00:09
Total cpu time: 11.19u 0.08s 11.27t Elapsed: 00:00:11
Start: Thu Aug 15 12:43:24 2013 End: Thu Aug 15 12:43:35 2013