RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3162
         (91 letters)



>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 84

 Score = 27.5 bits (61), Expect = 0.10
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 78 SGPQPGEEMLPEVA 91
          SG   GEE+LP+  
Sbjct: 3  SGSSGGEELLPDGV 16


>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 94

 Score = 24.5 bits (53), Expect = 1.5
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 67 PDTIDLTPLRGSGPQPG 83
             + L   R SGP  G
Sbjct: 78 ASPLRLQLDRSSGPSSG 94


>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 261

 Score = 24.5 bits (53), Expect = 2.1
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 1   MPKPQPTKSFLGLYCGKVLTYALDFVLSTLR--TTRLASFPDYLMFHLKKFTMKEDWTLA 58
           M + QP ++ +  +   +  Y     L+ L   T+   S    L     + T++E W LA
Sbjct: 164 MHRDQPREA-IAAFAVTLKKYDTPIALAALHTMTSLTGSAILALALAEGELTLEEAWALA 222

Query: 59  KLDVE 63
            LD +
Sbjct: 223 HLDED 227


>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces
           equi [TaxId: 99929]}
          Length = 153

 Score = 24.2 bits (52), Expect = 2.7
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 44  FHLKKFTMKEDWTLAKLDVEVEMP-DTIDLTPLRGSG 79
           F ++  +  +++    LDV+ ++P D ID     G+G
Sbjct: 86  FEVETISPSDEYVTYILDVDFDLPFDRIDFQDAPGNG 122


>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
           {Adeno-associated virus, aav-2 [TaxId: 272636]}
          Length = 519

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 2   PKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTR 34
                  SF+  Y    ++  +++ L    + R
Sbjct: 445 FSAAKFASFITQYSTGQVSVEIEWELQKENSKR 477


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,017
Number of extensions: 13983
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)