BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3169
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQY|L Chain L, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3UQY|M Chain M, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3USC|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USC|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USE|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|3USE|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|4GD3|L Chain L, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|M Chain M, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|J Chain J, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|K Chain K, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
Length = 582
Score = 30.4 bits (67), Expect = 0.48, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 80 DYIDILGNDKIHPTK---ILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKH 136
D+ID+L K P K + +L SW + G F R KK ++ G + R W H
Sbjct: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189
Query: 137 MTFRI---RKLYDFCNRKTKTGFQKKL 160
+++ L F + FQ+++
Sbjct: 190 PQYKLPPEANLMGFAHYLEALDFQREI 216
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 75 LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAW 134
L G+ I +GN P + +YN PS G+ EFQ L ++L++G+ + R
Sbjct: 202 LLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGIS 261
Query: 135 KHMTF 139
+ F
Sbjct: 262 TYSIF 266
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 403
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 29/101 (28%)
Query: 14 KQFVRF-RYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRINQLPLYRPKDH---- 68
K F ++ + W+D G K L ER F +K Q + R T++ LPL + K H
Sbjct: 128 KAFTKYCKKWQDADGKKQL-ERDFSSMKKYCQ---VIRVIAHTQMRLLPLRQKKAHLMEV 183
Query: 69 ------------WNEKR--------ALFGQNDYIDILGNDK 89
W +R +FGQ++ ID++G K
Sbjct: 184 QVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTK 224
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 75 LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAW 134
L G+ I +GN P + +YN PS G+ EFQ L ++L++G+ + R
Sbjct: 202 LLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGIS 261
Query: 135 KHMTF 139
+ F
Sbjct: 262 TYSIF 266
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 75 LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAW 134
L G+ I +GN P + +YN PS G+ EFQ L ++L++G+ + R
Sbjct: 200 LLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGIS 259
Query: 135 KHMTF 139
+ F
Sbjct: 260 TYSIF 264
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 75 LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAW 134
L G+ I +GN P + +YN PS G+ EFQ L ++L++G+ + R
Sbjct: 202 LLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGIS 261
Query: 135 KHMTF 139
+ F
Sbjct: 262 TYSIF 266
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 75 LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAW 134
L G+ I +GN P + +YN PS G+ EFQ L ++L++G+ + R
Sbjct: 202 LLGEIFGIRKMGNRHKFPKEEIYNTPSIRFGREHYEFQYLDLLSRVLENGAYRENRTGIS 261
Query: 135 KHMTF 139
+ F
Sbjct: 262 TYSIF 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,388,226
Number of Sequences: 62578
Number of extensions: 233768
Number of successful extensions: 394
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 8
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)