BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3169
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VLJ9|RM51_DROME 39S ribosomal protein L51, mitochondrial OS=Drosophila melanogaster
GN=mRpL51 PE=2 SV=2
Length = 174
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Query: 34 RRFGYTEKIFQKGLLPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPT 93
RR+GY +KIF+ GLLP D ++ +P+YRPK+ W++KRALFGQNDYIDILGND++HP
Sbjct: 50 RRYGYEDKIFKSGLLPHVDNGQKL-PMPVYRPKNAWSKKRALFGQNDYIDILGNDRLHPV 108
Query: 94 KILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
K+LY+LPSWLRG SGNE+Q LLRK+K+L+ P RPT W+ M RI LY F NRKTK
Sbjct: 109 KVLYSLPSWLRGVSGNEYQVLLRKRKLLEKSKYPIARPTKWREMEKRILYLYKFLNRKTK 168
Query: 154 TGFQ 157
TG+
Sbjct: 169 TGYS 172
>sp|Q29PG4|RM51_DROPS 39S ribosomal protein L51, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mRpL51 PE=3 SV=1
Length = 174
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 34 RRFGYTEKIFQKGLLPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPT 93
RR+GY +KIF+ GLLP D ++ +P+YRPK+ W+EKRALFGQNDYIDILGND++HP
Sbjct: 50 RRYGYKDKIFKSGLLPHLDNGQKL-PMPVYRPKNPWSEKRALFGQNDYIDILGNDRLHPV 108
Query: 94 KILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
+++Y++PSWLRG SGNE+Q LLRK+++L+ P RPT W+ M RI LY F NRKTK
Sbjct: 109 RVMYSVPSWLRGVSGNEYQVLLRKRRLLEKSKYPIARPTKWRDMQKRILYLYKFLNRKTK 168
Query: 154 TGFQKK 159
TG+ K+
Sbjct: 169 TGYSKQ 174
>sp|Q61SE7|RM51_CAEBR 39S ribosomal protein L51, mitochondrial OS=Caenorhabditis briggsae
GN=CBG06212 PE=3 SV=1
Length = 199
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 37 GYTEKIFQKGL--LPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTK 94
GYT + Q+G+ LPR P Y+ +D WN++ A FGQNDYID+LG+ +HP +
Sbjct: 45 GYTFRYHQQGVDPLPRIPDCKVPVARPNYKVRDQWNDEAARFGQNDYIDLLGDGSVHPAQ 104
Query: 95 ILYNLPSWLRGQSGNEFQNLLRK---KKMLQHGSIPQERPTAWKHMTFRIRKL 144
+ Y+ P+WLRG G N L K + L + Q P W + RI+ L
Sbjct: 105 LQYHTPTWLRGFPGQHKANELIKLIHYRNLYDSKLKQNSPKRWHELRKRIKYL 157
>sp|Q22438|RM51_CAEEL 39S ribosomal protein L51, mitochondrial OS=Caenorhabditis elegans
GN=T12G3.5 PE=3 SV=1
Length = 199
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 37 GYTEKIFQKGL--LPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTK 94
GYT + Q+G+ LPR P Y+ +D W+++ A FGQNDYID+LG+ +HP +
Sbjct: 45 GYTFRYHQQGVDPLPRIPDCKVPVARPAYKVRDQWSDEAARFGQNDYIDLLGDGSVHPAQ 104
Query: 95 ILYNLPSWLRGQSGNEFQNLLRK---KKMLQHGSIPQERPTAWKHMTFRIRKL 144
+ Y+ P+WLRG G N L K + L + Q P W + RI+ L
Sbjct: 105 LQYHTPTWLRGFPGQHKANELIKLIHYRNLYDAKLKQNSPKRWHELRKRIKYL 157
>sp|Q5BJJ8|RM51_DANRE 39S ribosomal protein L51, mitochondrial OS=Danio rerio GN=mrpl51
PE=2 SV=1
Length = 124
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 39 TEKIFQKGLLPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYN 98
+ ++F G R R++ +P + D W EKR++FG D I ILG+ K HP ++
Sbjct: 17 SSRLFSTGSCAR----IRMHAIPKLKEVDRWTEKRSMFGVYDNIGILGDFKAHPKDMIRG 72
Query: 99 LPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
P W+RG GNE Q LLRK+ M+ + ++R K RI LY NR K
Sbjct: 73 -PVWVRGFRGNELQRLLRKRNMVGDRMMTEDRHNLQK----RISHLYRRFNRHGK 122
>sp|Q4U2R6|RM51_HUMAN 39S ribosomal protein L51, mitochondrial OS=Homo sapiens GN=MRPL51
PE=1 SV=1
Length = 128
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 60 LPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKK 119
LP + D WNEKRA+FG D I ILGN + HP +++ P WLRG GNE Q +RK+K
Sbjct: 38 LPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHPKELIRG-PIWLRGWKGNELQRCIRKRK 96
Query: 120 MLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
M+ + ++ RIR LY NR K
Sbjct: 97 MVGSRMFADDL----HNLNKRIRYLYKHFNRHGK 126
>sp|Q28GD1|RM51_XENTR 39S ribosomal protein L51, mitochondrial OS=Xenopus tropicalis
GN=mrpl51 PE=2 SV=1
Length = 125
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 56 RINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLL 115
++N +P + D W+ KRAL+G D I ILG+ K HP ++ PSWLRG GNE Q +
Sbjct: 31 KMNFMPQPKNTDRWDHKRALYGVYDNIGILGDFKAHPRDLIIG-PSWLRGWKGNELQRCI 89
Query: 116 RKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
RK++M+ ++R +++ RIR LY NR K
Sbjct: 90 RKRQMVGPRMFYEDR----ENLNKRIRFLYKRFNRYGK 123
>sp|Q5ZKG1|RM51_CHICK 39S ribosomal protein L51, mitochondrial OS=Gallus gallus GN=MRPL51
PE=2 SV=1
Length = 143
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 56 RINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLL 115
R+ + P + D W EKRALFG D + ILG +IHP ++ P WLRG GNE Q +
Sbjct: 49 RVREPPKPQKVDRWTEKRALFGVYDNVGILGGFQIHPKHLIMG-PKWLRGWRGNELQRCI 107
Query: 116 RKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
RKK+M+ + + ++ RIR LY NR K
Sbjct: 108 RKKQMVGDRMFMDD----YHNLKKRIRFLYKRFNRTGK 141
>sp|Q66KZ3|RM51_XENLA 39S ribosomal protein L51, mitochondrial OS=Xenopus laevis
GN=mrpl51 PE=2 SV=2
Length = 125
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 56 RINQLPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLL 115
+++ +P + D W+ KRAL+G D I ILG+ K HP ++ P WLRG GNE Q +
Sbjct: 31 KVDFMPQPKNTDRWDNKRALYGVYDNIGILGDFKAHPRDLIIG-PFWLRGWKGNELQRCI 89
Query: 116 RKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
RK++M+ Q+R +++T RIR LY NR K
Sbjct: 90 RKRQMVGPRMFYQDR----ENLTKRIRFLYKRFNRYGK 123
>sp|Q9CPY1|RM51_MOUSE 39S ribosomal protein L51, mitochondrial OS=Mus musculus GN=Mrpl51
PE=2 SV=1
Length = 128
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 60 LPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKK 119
LP + D WNEKRALFG D I ILGN + HP +++ P WLRG GNE Q +RKKK
Sbjct: 38 LPPPKVVDRWNEKRALFGVYDNIGILGNFEKHPKELIKG-PVWLRGWRGNELQRCVRKKK 96
Query: 120 MLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTK 153
+ + ++ ++ RI LY NR K
Sbjct: 97 FVGNRMFIEDL----HNLNKRISYLYKHFNRHGK 126
>sp|P0C2B6|RM51_BOVIN 39S ribosomal protein L51, mitochondrial OS=Bos taurus GN=MRPL51
PE=1 SV=1
Length = 128
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 60 LPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKK 119
LP + D WN+KRA+FG D I ILGN + HP +++ P WLRG GNE Q +RKK+
Sbjct: 38 LPPPKVIDRWNQKRAMFGVYDNIGILGNFEKHPKELIKG-PVWLRGWKGNELQRCIRKKR 96
Query: 120 ML 121
M+
Sbjct: 97 MV 98
>sp|Q77MR6|ATI2_GAHVM Alpha trans-inducing factor homolog OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV059 PE=3 SV=1
Length = 568
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 102 WLRGQSGNE-FQNLLRKKKMLQH---GSIPQERPTAWKHMTFRIRKLYDFCNRKT 152
WL G GN ++ +R++K +H G P RPTAW + F IR ++ K+
Sbjct: 332 WLEGGLGNPMLRSAIRQQKRFEHYLGGLFPSIRPTAWGELEFSIRAWFELALAKS 386
>sp|A9H167|SYFA_GLUDA Phenylalanine--tRNA ligase alpha subunit OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=pheS PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 69 WNEKRA-LFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIP 127
W+ K + G +D++++LG+ +HP ++L N R G F + + ML+HG IP
Sbjct: 269 WSRKSGEIGGGDDWLEVLGSGMVHP-RVLANCGLDPREWQGFAFGMGIERLTMLRHG-IP 326
Query: 128 QER 130
R
Sbjct: 327 DLR 329
>sp|P14880|PYR6_FREDI Phycobilisome 30.8 kDa linker polypeptide, phycocyanin-associated,
rod OS=Fremyella diplosiphon GN=cpcH3 PE=3 SV=1
Length = 271
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 10 FVPLKQFVRFRYWKDQQ---GAKPLYE-RRFGYTEKIFQKGLLPRKDGATRINQLPLYRP 65
FV + VR W + G + L+E R E + Q+ + +D I Q LYR
Sbjct: 25 FVKTAEEVRSVIWSAYRQVLGNEHLFESERLSSAESLLQQAQISVRDFVRAIAQSELYRQ 84
Query: 66 KDHWNEKRALFGQNDYIDILGNDKIHPTKILYNL 99
K ++ + F + +Y +LG ++I Y++
Sbjct: 85 KFFYSNSQVRFIELNYKHLLGRAPYDESEIAYHV 118
>sp|P0ACD9|MBHL_SHIFL Hydrogenase-1 large chain OS=Shigella flexneri GN=hyaB PE=3 SV=1
Length = 597
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 80 DYIDILGNDKIHPTK---ILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKH 136
D+ID+L K P K + +L SW + G F R KK ++ G + R W H
Sbjct: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189
Query: 137 MTFRI---RKLYDFCNRKTKTGFQKKL 160
+++ L F + FQ+++
Sbjct: 190 PQYKLPPEANLMGFAHYLEALDFQREI 216
>sp|P0ACD8|MBHL_ECOLI Hydrogenase-1 large chain OS=Escherichia coli (strain K12) GN=hyaB
PE=1 SV=1
Length = 597
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 80 DYIDILGNDKIHPTK---ILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKH 136
D+ID+L K P K + +L SW + G F R KK ++ G + R W H
Sbjct: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189
Query: 137 MTFRI---RKLYDFCNRKTKTGFQKKL 160
+++ L F + FQ+++
Sbjct: 190 PQYKLPPEANLMGFAHYLEALDFQREI 216
>sp|Q5HL21|ALF1_STAEQ Fructose-bisphosphate aldolase class 1 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=fda PE=3 SV=3
Length = 296
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 4 TKFISNFVPLKQFVRFRYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRIN 58
TK SN + L ++QG K + E++F + +KI KGL+P + IN
Sbjct: 137 TKMRSNILEL----------NEQGIKDVVEQQFEFAKKIIAKGLVPIIEPEVNIN 181
>sp|Q8CMY5|ALF1_STAES Fructose-bisphosphate aldolase class 1 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=fda PE=3 SV=3
Length = 296
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 4 TKFISNFVPLKQFVRFRYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRIN 58
TK SN + L ++QG K + E++F + +KI KGL+P + IN
Sbjct: 137 TKMRSNILEL----------NEQGIKDVVEQQFEFAKKIIAKGLVPIIEPEVNIN 181
>sp|Q4L9B6|ALF1_STAHJ Fructose-bisphosphate aldolase class 1 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=fda PE=3 SV=3
Length = 296
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 4 TKFISNFVPLKQFVRFRYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRIN 58
TK SN + L ++QG K + E++F + +KI KGL+P + IN
Sbjct: 137 TKMRSNILEL----------NEQGIKDVVEQQFEFAKKIIAKGLVPIIEPEVNIN 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,322,035
Number of Sequences: 539616
Number of extensions: 2874488
Number of successful extensions: 5141
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5118
Number of HSP's gapped (non-prelim): 20
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)