Query psy3169
Match_columns 163
No_of_seqs 62 out of 64
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 18:07:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4045|consensus 100.0 1.7E-62 3.6E-67 394.4 8.2 150 7-158 18-167 (168)
2 PF10244 MRP-L51: Mitochondria 100.0 7.5E-60 1.6E-64 352.5 5.1 93 60-154 1-93 (94)
3 PRK08561 rps15p 30S ribosomal 49.3 28 0.00061 28.6 4.0 52 97-155 58-109 (151)
4 PF15545 Toxin_67: Putative to 48.1 4.1 8.8E-05 29.9 -0.9 20 99-118 7-26 (70)
5 PRK12875 ubiA prenyltransferas 34.8 15 0.00032 31.7 0.3 21 74-95 60-80 (282)
6 PF08734 GYD: GYD domain; Int 31.0 18 0.00038 26.3 0.2 12 74-85 41-52 (91)
7 PF08213 DUF1713: Mitochondria 29.6 52 0.0011 21.1 2.1 25 115-148 8-32 (34)
8 PF07304 SRA1: Steroid recepto 28.1 48 0.001 26.5 2.2 17 134-150 67-83 (157)
9 PF11626 Rap1_C: TRF2-interact 25.6 65 0.0014 23.0 2.3 30 103-146 58-87 (87)
10 KOG4427|consensus 19.4 39 0.00084 34.9 0.2 19 98-116 935-953 (1096)
No 1
>KOG4045|consensus
Probab=100.00 E-value=1.7e-62 Score=394.37 Aligned_cols=150 Identities=33% Similarity=0.561 Sum_probs=142.0
Q ss_pred ccccccceeeeeeeeeehhcCCCCceeccCCCccccccCCCCCCCCCCccccCCCCCCCCCCchhhhhcccccccccccC
Q psy3169 7 ISNFVPLKQFVRFRYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRINQLPLYRPKDHWNEKRALFGQNDYIDILG 86 (163)
Q Consensus 7 ~~~~~~~~~~vr~r~~adk~a~~p~v~rr~GY~~~i~~~GlLPrl~~~~kl~~~P~ykp~D~W~ekRAlFGqnDyIdILG 86 (163)
.+.++.+++||++.++|+++|++|.+ +++||+++++..|++|..+....+ |+|.|+++|+|++|||+|||||||||||
T Consensus 18 ~~~ma~ss~~~~~ls~a~rra~~~~~-~~~~~~~~~f~~glpr~~d~~~~l-p~P~y~~r~~Ws~krA~FGqnDyIdiLG 95 (168)
T KOG4045|consen 18 RGFMARSSVPRVVLSRAKRRAKYNDA-GYTFRYHQQFVDGLPRIPDCKVPL-PRPAYKVRDQWSDKRARFGQNDYIDILG 95 (168)
T ss_pred ccccccCCcceeeecchhhhccCCCc-ceeehhhhhcccCCCCCCCCCccC-CCCcccchhhhhHHHHhhCCcccccccc
Confidence 34567788999999999999999999 999999999999977776665655 9999999999999999999999999999
Q ss_pred CCCCCcccceecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHhhccCCCcccc
Q psy3169 87 NDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKTGFQK 158 (163)
Q Consensus 87 d~~~HP~~~ly~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~Nr~~kt~~~~ 158 (163)
||++||++++|++|+|||||+|||||+|||||||++..|+++++|++||||+|||+||||++||++|+++++
T Consensus 96 n~~~HP~~l~y~~P~WLRG~~GNElq~lirkRkl~~s~k~~~~~p~rw~el~KRI~YLyk~~NR~~k~g~~~ 167 (168)
T KOG4045|consen 96 NGSVHPAQLQYHTPTWLRGFPGNELQKLIRKRKLYDSAKLKQNSPKRWHELRKRIKYLYKQHNRERKLGLWE 167 (168)
T ss_pred CCccChHHHhhcCchHhhcCCchHHHHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHHhhhccccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF10244 MRP-L51: Mitochondrial ribosomal subunit; InterPro: IPR019373 MRP-L51 is a family of small proteins from the intact 55 S mitochondrial ribosome []. It has otherwise been referred to as bMRP-64 []. The exact function of this family is not known.
Probab=100.00 E-value=7.5e-60 Score=352.50 Aligned_cols=93 Identities=59% Similarity=1.119 Sum_probs=91.4
Q ss_pred CCCCCCCCCchhhhhcccccccccccCCCCCCcccceecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHH
Q psy3169 60 LPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTF 139 (163)
Q Consensus 60 ~P~ykp~D~W~ekRAlFGqnDyIdILGd~~~HP~~~ly~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~K 139 (163)
||+|+|+|+|||+||||||||||||||||++||++++|+ |+|||||+|||||+|||||+|++++|++++ ||+||+|||
T Consensus 1 ~P~ykp~D~W~ekrAlFGqnDyIdILGd~~~hP~~l~~~-P~WlRG~~GNE~q~liRkrkm~~~~~~~~~-P~k~~~l~K 78 (94)
T PF10244_consen 1 MPEYKPKDRWTEKRALFGQNDYIDILGDGKLHPKDLIYG-PSWLRGFRGNELQRLIRKRKMVGKRMFPED-PTKWHNLQK 78 (94)
T ss_pred CCCCCcCCCccHHHhhcCCcccccccCCCCcCHHHHhcC-cHHHhcCCchHHHHHHHHHHHHHhhcchhH-HHHHHHHHH
Confidence 799999999999999999999999999999999999888 999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhhccCCC
Q psy3169 140 RIRKLYDFCNRKTKT 154 (163)
Q Consensus 140 RI~yLYk~~Nr~~kt 154 (163)
||+||||+|||+||+
T Consensus 79 RI~yLYk~~Nr~~k~ 93 (94)
T PF10244_consen 79 RIRYLYKKLNRKTKH 93 (94)
T ss_pred HHHHHHHHhccccCC
Confidence 999999999999996
No 3
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=49.25 E-value=28 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=40.6
Q ss_pred ecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHhhccCCCc
Q psy3169 97 YNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKTG 155 (163)
Q Consensus 97 y~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~Nr~~kt~ 155 (163)
|.+|. .+-+.|+-+.+.|....+.- +=|+|+.+|-+||..|-++|....|-.
T Consensus 58 ~gip~-Vk~vtG~ki~~iLk~~gl~p------~iPEDL~~L~~ri~~L~~HL~~nkKD~ 109 (151)
T PRK08561 58 YGIPD-VKLITGKKITEILEENGLAP------EIPEDLRNLIKKAVNLRKHLEENPKDL 109 (151)
T ss_pred cCCCc-eeeeccchHHHHHHHcCCCC------CCcHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44443 56677899999988877642 348999999999999999999887743
No 4
>PF15545 Toxin_67: Putative toxin 67
Probab=48.10 E-value=4.1 Score=29.89 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.0
Q ss_pred CCccccCCCchHHHHHHHhh
Q psy3169 99 LPSWLRGQSGNEFQNLLRKK 118 (163)
Q Consensus 99 ~P~WLRG~~GNElQ~liRKr 118 (163)
.|+|+|||--||+-+.-+.+
T Consensus 7 q~~~vRGwiknEi~~i~~~~ 26 (70)
T PF15545_consen 7 QPSWVRGWIKNEINRIKTGR 26 (70)
T ss_pred chHHHHHHHHHHHHHHHhCc
Confidence 49999999999987665543
No 5
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=34.76 E-value=15 Score=31.73 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=16.9
Q ss_pred hcccccccccccCCCCCCcccc
Q psy3169 74 ALFGQNDYIDILGNDKIHPTKI 95 (163)
Q Consensus 74 AlFGqnDyIdILGd~~~HP~~~ 95 (163)
+++|.|||.|.= .++.||++.
T Consensus 60 ~~y~iND~~D~D-~Dr~~prk~ 80 (282)
T PRK12875 60 FLYGVNDVFDAD-TDELNPKKD 80 (282)
T ss_pred HHhcchhhhhhh-ccccCCCcc
Confidence 357899999995 678999874
No 6
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.01 E-value=18 Score=26.27 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.1
Q ss_pred hccccccccccc
Q psy3169 74 ALFGQNDYIDIL 85 (163)
Q Consensus 74 AlFGqnDyIdIL 85 (163)
+.||+||++.|.
T Consensus 41 ~t~G~yD~v~i~ 52 (91)
T PF08734_consen 41 WTLGEYDFVVIV 52 (91)
T ss_pred EecCCCCEEEEE
Confidence 469999999885
No 7
>PF08213 DUF1713: Mitochondrial domain of unknown function (DUF1713); InterPro: IPR013177 This domain is found at the C-terminal end of mitochondrial proteins of unknown function.
Probab=29.64 E-value=52 Score=21.13 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHhhhccccCcccCCCcchhhHHHHHHHHHHHHh
Q psy3169 115 LRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFC 148 (163)
Q Consensus 115 iRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~ 148 (163)
+|+++|-- -+|..|.||.++|-+++
T Consensus 8 kRr~KM~k---------HK~kKlrKr~r~~rrkl 32 (34)
T PF08213_consen 8 KRRKKMKK---------HKYKKLRKRTRFLRRKL 32 (34)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 56677743 26799999999998876
No 8
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=28.06 E-value=48 Score=26.48 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhhc
Q psy3169 134 WKHMTFRIRKLYDFCNR 150 (163)
Q Consensus 134 w~~l~KRI~yLYk~~Nr 150 (163)
-.+.+|||.-||.++|-
T Consensus 67 ~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNN 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47999999999999995
No 9
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=25.65 E-value=65 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=20.2
Q ss_pred ccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHH
Q psy3169 103 LRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYD 146 (163)
Q Consensus 103 LRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk 146 (163)
|++.-+.++++|+.|. -+.+.++|+.||-|
T Consensus 58 L~~~~~~~~~~L~~kh--------------G~~~i~~R~~FL~k 87 (87)
T PF11626_consen 58 LRSGDKDDIERLIKKH--------------GEERIERRKEFLEK 87 (87)
T ss_dssp HTS--HHHHHHHHHHH---------------HHHHHHHHHHHT-
T ss_pred HHcCCHHHHHHHHHHh--------------CHHHHHHHHHHHhC
Confidence 5555677888888775 23788999999864
No 10
>KOG4427|consensus
Probab=19.43 E-value=39 Score=34.90 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.3
Q ss_pred cCCccccCCCchHHHHHHH
Q psy3169 98 NLPSWLRGQSGNEFQNLLR 116 (163)
Q Consensus 98 ~~P~WLRG~~GNElQ~liR 116 (163)
.-|.||+=|+-+|||+||.
T Consensus 935 i~P~WlslFs~~elq~LiS 953 (1096)
T KOG4427|consen 935 ISPEWLSLFSPPELQRLIS 953 (1096)
T ss_pred cCHHHHHccCcHHHHHHhc
Confidence 4599999999999999996
Done!