Query psy3169
Match_columns 163
No_of_seqs 62 out of 64
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 18:07:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_Q 30S ribosomal protein S 35.4 38 0.0013 26.9 4.0 42 107-154 74-115 (158)
2 3te3_A Polycystic kidney disea 34.4 17 0.00059 22.9 1.5 13 106-118 4-16 (39)
3 2yru_A Steroid receptor RNA ac 32.0 25 0.00087 26.0 2.3 21 132-152 36-56 (118)
4 4gif_A Polycystic kidney disea 28.7 24 0.00082 22.9 1.5 13 106-118 4-16 (45)
5 3hrn_A Transient receptor pote 24.7 30 0.001 24.0 1.5 14 105-118 2-15 (64)
6 4af3_D Incenp, inner centromer 16.3 26 0.0009 23.9 -0.3 58 90-156 4-64 (71)
7 1m6j_A TIM, TPI, triosephospha 14.2 98 0.0033 25.6 2.5 31 85-117 161-199 (261)
8 2vgp_C Inner centromere protei 12.8 93 0.0032 19.7 1.6 18 99-119 1-18 (43)
9 4fp9_B Mterf domain-containing 12.7 1.3E+02 0.0045 25.4 3.0 38 105-150 160-197 (335)
10 1vq8_Q 50S ribosomal protein L 12.0 80 0.0027 23.0 1.2 16 76-91 34-49 (96)
No 1
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.35 E-value=38 Score=26.87 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=34.5
Q ss_pred CchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHhhccCCC
Q psy3169 107 SGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKT 154 (163)
Q Consensus 107 ~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~Nr~~kt 154 (163)
.|+-+.+.|....+.. +-|+|..+|-+||..|-++|..+.|-
T Consensus 74 ~G~ki~~iLk~~gl~p------~iPEDL~~Lt~RI~~Lt~HLk~hkKD 115 (158)
T 3j20_Q 74 RNLTITRILEKHGLAP------EIPEDLMFLIRRAVNLRKHLEQHPKD 115 (158)
T ss_dssp SCCCTHHHHHHHTCSC------SSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CcCcHHHHHHHcCCCC------CCHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3888888888876632 34899999999999999999888764
No 2
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=34.38 E-value=17 Score=22.94 Aligned_cols=13 Identities=46% Similarity=0.598 Sum_probs=11.1
Q ss_pred CCchHHHHHHHhh
Q psy3169 106 QSGNEFQNLLRKK 118 (163)
Q Consensus 106 ~~GNElQ~liRKr 118 (163)
++|.|||+|.|+=
T Consensus 4 Vs~eeF~~L~rRV 16 (39)
T 3te3_A 4 VSGEEFYMLTRRV 16 (39)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 7899999998863
No 3
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.99 E-value=25 Score=26.03 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHhhccC
Q psy3169 132 TAWKHMTFRIRKLYDFCNRKT 152 (163)
Q Consensus 132 tkw~~l~KRI~yLYk~~Nr~~ 152 (163)
.++.+.+||+..||.++|..+
T Consensus 36 ~~~~D~~KRL~~LfdkLn~~~ 56 (118)
T 2yru_A 36 QVCDDISRRLALLREQWAGGK 56 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 457999999999999999864
No 4
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=28.75 E-value=24 Score=22.91 Aligned_cols=13 Identities=46% Similarity=0.598 Sum_probs=11.4
Q ss_pred CCchHHHHHHHhh
Q psy3169 106 QSGNEFQNLLRKK 118 (163)
Q Consensus 106 ~~GNElQ~liRKr 118 (163)
|+|.|||+|.|+=
T Consensus 4 Vs~eeF~~L~rRV 16 (45)
T 4gif_A 4 VSGEEFYMLTRRV 16 (45)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 7899999999864
No 5
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=24.75 E-value=30 Score=24.00 Aligned_cols=14 Identities=50% Similarity=0.638 Sum_probs=11.8
Q ss_pred CCCchHHHHHHHhh
Q psy3169 105 GQSGNEFQNLLRKK 118 (163)
Q Consensus 105 G~~GNElQ~liRKr 118 (163)
+|++-|||+|.|+=
T Consensus 2 ~VS~EEF~~L~rRV 15 (64)
T 3hrn_A 2 GVSYEEFQVLVRRV 15 (64)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 48999999998864
No 6
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=16.35 E-value=26 Score=23.87 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCcccceecCCccccCCCchHHHHHHHhhh---ccccCcccCCCcchhhHHHHHHHHHHHHhhccCCCcc
Q psy3169 90 IHPTKILYNLPSWLRGQSGNEFQNLLRKKK---MLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKTGF 156 (163)
Q Consensus 90 ~HP~~~ly~~P~WLRG~~GNElQ~liRKrk---m~~~~~~~~~rPtkw~~l~KRI~yLYk~~Nr~~kt~~ 156 (163)
-+|++ .+|.|.+| .+|+..|++.. +=-+..|....|-+..++=+.++ .+++++|-+..
T Consensus 4 ~~prk---~iP~WA~~---~~L~~~L~~Q~~~~~Dpd~IFG~i~p~~LeeIF~~~k---~r~~kRtSSA~ 64 (71)
T 4af3_D 4 AHPRK---PIPTWARG---TPLSQAIIHQYYHPPNLLELFGTILPLDLEDIFKKSK---PRYHKRTSSAV 64 (71)
T ss_dssp ----C---CCCGGGSH---HHHHHHHHHHHHSCCCHHHHHCCCCCCCSTTTCC-----------------
T ss_pred cCCCC---CCCCccCc---HHHHHHHHHHhccCCCHHHHcCCCCCCCHHHHhCccc---cccccCCCccc
Confidence 35553 58999875 79999999884 32233344444555555544443 34555555443
No 7
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=14.15 E-value=98 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=19.9
Q ss_pred cCCCCCCcccceecCCccccCCCc--------hHHHHHHHh
Q psy3169 85 LGNDKIHPTKILYNLPSWLRGQSG--------NEFQNLLRK 117 (163)
Q Consensus 85 LGd~~~HP~~~ly~~P~WLRG~~G--------NElQ~liRK 117 (163)
++.....+.=|-|. |.|.=|- | .|....||+
T Consensus 161 ~~~~~~~~~vIAYE-PvWAIGT-G~~Atpe~a~evh~~IR~ 199 (261)
T 1m6j_A 161 ISKEAWKNIILAYE-PVWAIGT-GKTATPDQAQEVHQYIRK 199 (261)
T ss_dssp SCTGGGGGEEEEEC-CGGGSSS-SCCCCHHHHHHHHHHHHH
T ss_pred CCHHHcCCEEEEEC-CHHHhCC-CCCCCHHHHHHHHHHHHH
Confidence 34444566656666 9999995 6 555566663
No 8
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=12.80 E-value=93 Score=19.67 Aligned_cols=18 Identities=28% Similarity=0.774 Sum_probs=15.0
Q ss_pred CCccccCCCchHHHHHHHhhh
Q psy3169 99 LPSWLRGQSGNEFQNLLRKKK 119 (163)
Q Consensus 99 ~P~WLRG~~GNElQ~liRKrk 119 (163)
+|.|.. |++|+..|++.-
T Consensus 1 IP~WA~---~~~L~~~l~~Q~ 18 (43)
T 2vgp_C 1 IPAWAS---GNLLTQAIRQQY 18 (43)
T ss_dssp CCGGGS---HHHHHHHHHHHH
T ss_pred CCcccc---hHHHHHHHHHHH
Confidence 588965 789999999984
No 9
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=12.70 E-value=1.3e+02 Score=25.36 Aligned_cols=38 Identities=5% Similarity=0.078 Sum_probs=28.8
Q ss_pred CCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHhhc
Q psy3169 105 GQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFCNR 150 (163)
Q Consensus 105 G~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~Nr 150 (163)
||+.+|+..++.+--.+ +.. ...+|+.++.||+..++.
T Consensus 160 GfS~~ev~~mv~r~P~l----L~~----S~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 160 LFTVQQVTKILHSCPSV----LRE----DLGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp CCCHHHHHHHHHHCGGG----GTS----CHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHhCChh----hhC----CHHHHHHHHHHHHHHhCC
Confidence 89999999998875543 222 247899999999887765
No 10
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=12.01 E-value=80 Score=23.02 Aligned_cols=16 Identities=6% Similarity=0.258 Sum_probs=14.0
Q ss_pred ccccccccccCCCCCC
Q psy3169 76 FGQNDYIDILGNDKIH 91 (163)
Q Consensus 76 FGqnDyIdILGd~~~H 91 (163)
|=.-|+.||-||+.+|
T Consensus 34 yk~Gd~VdIk~~~svq 49 (96)
T 1vq8_Q 34 FDDGEKVHLKIDPSVP 49 (96)
T ss_dssp CCTTCEEEECCCTTCC
T ss_pred cCCCCEEEEEecCCcc
Confidence 6667999999999987
Done!