Query psy3169
Match_columns 163
No_of_seqs 62 out of 64
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 18:07:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za2 b.82.3.2 (A:6-137) Cat 39.0 9 0.00066 24.2 2.4 66 75-148 58-126 (132)
2 d2hjqa1 a.140.3.2 (A:50-103) H 25.3 17 0.0012 22.8 1.9 23 130-152 31-53 (54)
3 d1tpna_ g.27.1.1 (A:) Tissue-t 19.2 12 0.00089 23.3 0.2 13 98-110 17-30 (50)
4 d1jmja_ e.1.1.1 (A:) Heparin c 17.9 21 0.0015 28.2 1.5 41 75-115 6-48 (420)
5 d1k1va_ a.37.1.1 (A:) Mafg {Mo 15.9 36 0.0026 20.3 1.8 24 102-125 17-40 (41)
6 d1uwwa_ b.18.1.23 (A:) Endoglu 14.2 25 0.0019 26.7 1.0 34 58-92 50-84 (184)
7 d1m6ja_ c.1.1.1 (A:) Triosepho 14.1 19 0.0014 27.5 0.2 13 70-82 102-114 (260)
8 d1zyba2 b.82.3.2 (A:1-147) Pro 13.6 30 0.0022 22.2 1.1 67 74-148 75-144 (147)
9 d2gaua2 b.82.3.2 (A:10-151) Tr 12.8 29 0.0021 22.2 0.8 65 75-148 69-136 (142)
10 d1neya_ c.1.1.1 (A:) Triosepho 12.1 24 0.0018 26.8 0.3 13 70-82 95-107 (247)
No 1
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.99 E-value=9 Score=24.18 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=46.4
Q ss_pred ccccccccc---ccCCCCCCcccceecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHh
Q psy3169 75 LFGQNDYID---ILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFC 148 (163)
Q Consensus 75 lFGqnDyId---ILGd~~~HP~~~ly~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~ 148 (163)
.++..|+++ ++.++..++..+.-..++-+-=++..+|+.++++-.-+...++ ..|..|++.+.+++
T Consensus 58 ~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~--------~~l~~rl~~~~~~i 126 (132)
T d1i5za2 58 YLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLS--------AQMARRLQVTSEKV 126 (132)
T ss_dssp EECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhCcccccchHHHhcCCccceEEEEEccceEEEEEcHHHHHHHHhhCHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 455666654 5666677777777888999999999999999987554443333 56777777766554
No 2
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=25.32 E-value=17 Score=22.77 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.6
Q ss_pred CcchhhHHHHHHHHHHHHhhccC
Q psy3169 130 RPTAWKHMTFRIRKLYDFCNRKT 152 (163)
Q Consensus 130 rPtkw~~l~KRI~yLYk~~Nr~~ 152 (163)
.|++++|...||.|+.+....++
T Consensus 31 ~ps~fkn~~eria~il~qidnkg 53 (54)
T d2hjqa1 31 NPSDFKNADERIAYILKQIDNKG 53 (54)
T ss_dssp CTTSCCSHHHHHHHHHHHHTTCC
T ss_pred ChhhhcChHHHHHHHHHHhhccC
Confidence 38899999999999999886654
No 3
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.23 E-value=12 Score=23.33 Aligned_cols=13 Identities=38% Similarity=0.596 Sum_probs=9.7
Q ss_pred cCCcccc-CCCchH
Q psy3169 98 NLPSWLR-GQSGNE 110 (163)
Q Consensus 98 ~~P~WLR-G~~GNE 110 (163)
..-+||| +++||-
T Consensus 17 ~~~sWLRp~lrGnr 30 (50)
T d1tpna_ 17 QHQSWLRPVLRSNR 30 (50)
T ss_dssp TTCEEEECCSSSSC
T ss_pred cCcceecccccCCc
Confidence 3578999 578873
No 4
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.92 E-value=21 Score=28.21 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=11.5
Q ss_pred ccccc-ccccccCCCCCCcccceecCCccccCCCc-hHHHHHH
Q psy3169 75 LFGQN-DYIDILGNDKIHPTKILYNLPSWLRGQSG-NEFQNLL 115 (163)
Q Consensus 75 lFGqn-DyIdILGd~~~HP~~~ly~~P~WLRG~~G-NElQ~li 115 (163)
.||++ ||||++.+...-|...=.....=++.+.| ..+|+|-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 48 (420)
T d1jmja_ 6 IFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLN 48 (420)
T ss_dssp HHSCCC-----------------------CCSSTTCCHHHHHH
T ss_pred hcCCCcchhhccCccccCCCCCcccccceeeccccccHHHHHH
Confidence 58996 49999998888888754454455667777 4455544
No 5
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.86 E-value=36 Score=20.31 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.6
Q ss_pred cccCCCchHHHHHHHhhhccccCc
Q psy3169 102 WLRGQSGNEFQNLLRKKKMLQHGS 125 (163)
Q Consensus 102 WLRG~~GNElQ~liRKrkm~~~~~ 125 (163)
=|||++-+|..++=.+|+-+.++.
T Consensus 17 ~Lrgl~keev~~lKqrRRTLKNRG 40 (41)
T d1k1va_ 17 HLRGLSKEEIIQLKQRRRTLKNRG 40 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHHHHHhhhcCC
Confidence 379999999999988888776654
No 6
>d1uwwa_ b.18.1.23 (A:) Endoglucanase (alkaline cellulase) {Bacillus sp. 1139 [TaxId: 1411]}
Probab=14.20 E-value=25 Score=26.74 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.3
Q ss_pred cCCCCCCCCCCchhh-hhcccccccccccCCCCCCc
Q psy3169 58 NQLPLYRPKDHWNEK-RALFGQNDYIDILGNDKIHP 92 (163)
Q Consensus 58 ~~~P~ykp~D~W~ek-RAlFGqnDyIdILGd~~~HP 92 (163)
+.-|+-+|.|-|.-. |..| -++.++|+|...+.-
T Consensus 50 ~~~~evk~~d~WAnapRl~~-~~~~~~~~g~~~Lt~ 84 (184)
T d1uwwa_ 50 FGYPEVKPSDNWATAPRLDF-WKSDLVRGENDYVTF 84 (184)
T ss_dssp EECCSSCCSSTTTTCCEEEE-ECTTCCCTTCCEEEE
T ss_pred ccCCCcCcccccccchheec-cCcccccCCCcEEEE
Confidence 356889999999999 8888 667799999987654
No 7
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}
Probab=14.09 E-value=19 Score=27.46 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.4
Q ss_pred hhhhhcccccccc
Q psy3169 70 NEKRALFGQNDYI 82 (163)
Q Consensus 70 ~ekRAlFGqnDyI 82 (163)
+|+|++||.+|-+
T Consensus 102 SERR~~f~Etd~~ 114 (260)
T d1m6ja_ 102 SERRQIFHESNEQ 114 (260)
T ss_dssp HHHHHHSCCCHHH
T ss_pred hhhhhhhcccHHH
Confidence 7999999999944
No 8
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=13.58 E-value=30 Score=22.23 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=44.0
Q ss_pred hccccccccc---ccCCCCCCcccceecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHh
Q psy3169 74 ALFGQNDYID---ILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFC 148 (163)
Q Consensus 74 AlFGqnDyId---ILGd~~~HP~~~ly~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~ 148 (163)
+.++..|.++ ++++....+..+.-..++-+--++..+|+.++..-.-+....+ ..|..|++-|+.++
T Consensus 75 ~~~~~g~~fGe~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~--------~~ls~r~~~l~~rl 144 (147)
T d1zyba2 75 EQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYM--------NIVSNRAQNLYSRL 144 (147)
T ss_dssp EEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred EEcCCCCEeccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3455555554 3445555566776778889989999999998876544433222 45778888888654
No 9
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=12.79 E-value=29 Score=22.18 Aligned_cols=65 Identities=6% Similarity=0.032 Sum_probs=43.2
Q ss_pred ccccccccc---ccCCCCCCcccceecCCccccCCCchHHHHHHHhhhccccCcccCCCcchhhHHHHHHHHHHHHh
Q psy3169 75 LFGQNDYID---ILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTFRIRKLYDFC 148 (163)
Q Consensus 75 lFGqnDyId---ILGd~~~HP~~~ly~~P~WLRG~~GNElQ~liRKrkm~~~~~~~~~rPtkw~~l~KRI~yLYk~~ 148 (163)
.++..|.|+ ++++. -++..+--..|+.+--++-++|+.++..-.-+...++ +.|.+|++.+-.++
T Consensus 69 ~~~~G~~~G~~~~~~~~-~~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~--------~~l~~rl~~~~~~i 136 (142)
T d2gaua2 69 IVKPGQFFGMRPYFAEE-TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFL--------KALAKELGYAERRT 136 (142)
T ss_dssp EECTTCEESHHHHHHTS-CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhccC-CceeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 366666665 33333 3454566677899999999999999998776554443 56677766655443
No 10
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.08 E-value=24 Score=26.82 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=11.7
Q ss_pred hhhhhcccccccc
Q psy3169 70 NEKRALFGQNDYI 82 (163)
Q Consensus 70 ~ekRAlFGqnDyI 82 (163)
+|+|++||.+|.+
T Consensus 95 SERR~~f~Etd~~ 107 (247)
T d1neya_ 95 SERRSYFHEDDKF 107 (247)
T ss_dssp HHHHHTTCCCHHH
T ss_pred hhhhhhccchHHH
Confidence 7999999999965
Done!