RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3169
(163 letters)
>gnl|CDD|220649 pfam10244, MRP-L51, Mitochondrial ribosomal subunit. MRP-L51 is a
family of small proteins from the intact 55 S
mitochondrial ribosome. It has otherwise been referred
to as bMRP-64. The exact function of this family is not
known.
Length = 94
Score = 100 bits (251), Expect = 2e-28
Identities = 50/96 (52%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 60 LPLYRPKDHWNEKRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLLRKKK 119
LP +P+D W+EKRALFGQNDYIDILG+ K HP ++Y PSWLRG GNE Q L+RK+
Sbjct: 1 LPKPKPRDRWSEKRALFGQNDYIDILGDFKAHPKDLIYG-PSWLRGWRGNELQRLIRKRN 59
Query: 120 MLQHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKTG 155
M+ + +E P+ W ++ RIR LY NR K
Sbjct: 60 MVGD-RMMEEDPSKWHNLEKRIRYLYKRFNRTGKHR 94
>gnl|CDD|177555 PHA03193, PHA03193, tegument protein VP11/12; Provisional.
Length = 594
Score = 33.5 bits (76), Expect = 0.042
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 102 WLRGQSGNE-FQNLLRKKKMLQH---GSIPQERPTAWKHMTFRIRKLYDFCNRKTKTGFQ 157
WL G N + +R++K + P P AW + F I ++ K+
Sbjct: 352 WLEGGLANPMLRRAIRQQKRFECFLGELFPSINPCAWADLEFSIAAWFEHALAKSMVIHG 411
Query: 158 KKLKSN 163
LK +
Sbjct: 412 SLLKKS 417
>gnl|CDD|178068 PLN02449, PLN02449, ferrochelatase.
Length = 485
Score = 27.9 bits (62), Expect = 2.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
Query: 11 VPLKQFVRFRYWKDQQGAKPLYERRFGYTEKIFQKGLLPRKDGATRINQLPLY 63
+P K +V RYW P E E I Q + DG T++ LPLY
Sbjct: 178 LPAKVYVGMRYWH------PFTE------EAIDQI----KADGITKLVVLPLY 214
>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 27.8 bits (63), Expect = 3.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 72 KRALFGQNDYIDILGNDKIHPTKILYNLPSWLRGQSGNEFQNLL 115
RA++ + DYI + L ++P L G++G +N L
Sbjct: 647 GRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAGFNIENAL 690
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 27.7 bits (61), Expect = 3.9
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 80 DYIDILGNDKIHP---TKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKH 136
D+ID+L K P +++ +L SW + G F R KK ++ G + R W H
Sbjct: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189
Query: 137 MTFRIR---KLYDFCNRKTKTGFQKKL 160
+++ L F + FQ+++
Sbjct: 190 PQYKLPPEANLMGFAHYLEALDFQREI 216
>gnl|CDD|218166 pfam04598, Gasdermin, Gasdermin family. The precise function of
this protein is unknown. A deletion/insertion mutation
is associated with an autosomal dominant non-syndromic
hearing impairment form. In addition, this protein has
also been found to contribute to acquired etoposide
resistance in melanoma cells. This family also includes
the gasdermin protein.
Length = 451
Score = 27.0 bits (60), Expect = 5.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 93 TKILYNLPSWLRGQSGNEFQNLLRKKKMLQ 122
+ L LP LR LLR ++ LQ
Sbjct: 290 FQPLAELPRELRAALLGSLLALLRDQEALQ 319
>gnl|CDD|132750 cd06952, NR_LBD_TR2_like, The ligand binding domain of the orphan
nuclear receptors TR4 and TR2. The ligand binding
domain of the TR4 and TR2 (human testicular receptor 4
and 2): TR4 and TR2 are orphan nuclear receptors.
Several isoforms of TR4 and TR2 have been isolated in
various tissues. TR2 is abundantly expressed in the
androgen-sensitive prostate. TR4 transcripts are
expressed in many tissues, including central nervous
system, adrenal gland, spleen, thyroid gland, and
prostate. The expression of TR2 is negatively regulated
by androgen, retinoids, and radiation. The expression of
both mouse TR2 and TR4 is up-regulated by neurocytokine
ciliary neurotrophic factor (CNTF) in mouse. It has
shown that human TR2 binds to a wide spectrum of natural
hormone response elements (HREs) with distinct
affinities suggesting that TR2 may cross-talk with other
gene expression regulation systems. The genes responding
to TR2 or TR4 include genes that are regulated by
retinoic acid receptor, vitamin D receptor, peroxisome
proliferator-activated receptor. TR4/2 binds to HREs as
a dimer. Like other members of the nuclea r receptor
(NR) superfamily of ligand-activated transcription
factors, TR2-like receptors have a central well
conserved DNA binding domain (DBD), a variable
N-terminal domain, a flexible hinge and a C-terminal
ligand binding domain (LBD).
Length = 222
Score = 26.1 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 123 HGSIPQERPTA--WKHMTFRIRKLYDFCNRKTK 153
SI Q++ +A K + I KL +F N K
Sbjct: 92 QTSIQQDKLSADKVKQVMEHINKLQEFVNSMQK 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,575,234
Number of extensions: 774897
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 15
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)