RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3169
         (163 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 1.8
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 24/84 (28%)

Query: 48  LPRKDGATRINQLPLYRPKDHWNEKR---ALF-GQNDYIDILGNDKIHPTKILYNLPSWL 103
           L ++     +N+   + P      K+   +L  G  + + + G     P + LY L   L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAG----KQVEISLVNGAKNLV-VSG-----PPQSLYGLNLTL 393

Query: 104 RG--------QSGNEFQNLLRKKK 119
           R         QS   F    RK K
Sbjct: 394 RKAKAPSGLDQSRIPFSE--RKLK 415


>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II)
           complex, homodimer, lyase; 1.50A {Escherichia coli}
           SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
          Length = 135

 Score = 26.2 bits (58), Expect = 3.7
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 122 QHGSIPQERPTAWKHMTFRIRKLYDFCNRKTKTG 155
             G    E  TA+ H+   +    + C +  + G
Sbjct: 60  NWGVDKYELGTAYGHIALSVDNAAEACEKIRQNG 93


>4eq6_B Platinum sensitivity protein 3; DNA binding protein; 1.80A
           {Saccharomyces cerevisiae} PDB: 4dt1_B
          Length = 256

 Score = 25.6 bits (55), Expect = 7.4
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 90  IHPTKILYNLPSWLRGQSGNEFQNLLRKKKMLQHGSIPQERPTAWKHMTF 139
           I  TK   NLP+ LR     E ++ L    +++       +P+       
Sbjct: 30  ITSTKNYINLPNELRNLISEEQESKLGFLHIIESDF----KPSVALQKLV 75


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,558,074
Number of extensions: 139211
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 15
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)