BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy317
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 157 NPKILIFDEATSAL 170
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 163 NPKILIFDEATSAL 176
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 159 NPKILIFDEATSAL 172
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 157 NPKILIFDEATSAL 170
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 163 NPKILIFDEATSAL 176
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 158
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FDE TS L
Sbjct: 159 NPKILIFDEATSAL 172
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+LD +GL++ +LSGGQ +R++IA L P IM FDEPTS L
Sbjct: 121 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+LD +GL++ +LSGGQ +R++IA L P IM FDEPTS L
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 29 GMMVLAAMFNQSQAGSC-FISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVN 83
GM V ++ AG+ FISE L+E T+ + LSGGQ++R++IA LVN
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 84 NPPIMFFDEPTSPL 97
NP I+ FD+ TS L
Sbjct: 163 NPKILIFDQATSAL 176
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L +GL + + SNLSGGQK+R++IA L +NP ++ DE TS L A
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L +GL + + SNLSGGQK+R++IA L +NP ++ D+ TS L A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L +GL + + SNLSGGQK+R++IA L +NP ++ D+ TS L A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQK+RLSIA +NNPPI+ DE TS L
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSAL 508
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA L NNPPI+ DEPT L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGAL 176
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
FI+E+ + G + + LSGGQK+R++IA LV NP I+ DE TS L
Sbjct: 1199 FIAELPE--GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV NP I+ DE TS L
Sbjct: 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA L NNPPI+ D+PT L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGAL 176
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV NP I+ DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV P I+ DE TS L
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV NP I+ DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV P I+ DE TS L
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
+L LGL + + LSGG+++R++IA L N P ++F DEPT L A
Sbjct: 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA L NNPPI+ D+PT L
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWAL 176
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+LSGGQ++R+SIA L P ++ FDEPTS L
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQK+R++IA L+ NP I+ DE TS L
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSAL 545
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQK+R++IA L+ NP I+ DE TS L
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSAL 514
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E+L + L+ + LSGGQ++R+++A L P ++ FDEP + +
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E+ + LGL E LSGGQ++R+++ +V P + DEP S L
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
G++ K T LS GQKKR++IA LV P ++ DEPT+ L
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
I ++L+ +GL NLSGGQK+RL+IA L + + DEP S L
Sbjct: 121 IKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSML 171
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+++R+++A LV NP I+ DEP S L
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSAL 158
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E+ + LGL E LSGGQ++R+++ ++ P + DEP S L
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNL 173
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E++ L L+ +LSGG+ +R++IA L+ N FFDEP+S L
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFI-SEILDTLGLQEHKTTMTSNLSG 69
WD K + + L + + S+ S F +E+L LG+ + + LSG
Sbjct: 345 WDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSG 404
Query: 70 GQKKRLSIALELVNNPPIMFFDEPTSPL 97
G+ +R++IA L+ + I DEP++ L
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYL 432
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQ++R+++A LV P ++ FDEP S L
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL-HKAEFTPKYERKVDTKVDYTGNRT 121
LSGG+++R++IA L+ +P I+ FDE TS L K E+ +++ V+ D NRT
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL--FQKAVE---DLRKNRT 206
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
N SGGQK+RLSIA LV P ++ D+ TS
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTS 508
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG K+R+ IAL L+ +P ++ DEPTS L
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSAL 185
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+SGGQ++RL+IA + NP I+ DE T+ L
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASL 170
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD-YTGNRT 121
LSGGQ++R++IA L+ + PI+ DE TS L + ER + +D NRT
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDT-----ESERAIQAALDELQKNRT 531
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+++ILD + H LSGGQ++R+++A LV +P ++ DEP S L
Sbjct: 124 VAKILDIHHVLNH---FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNL 171
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
NLSGGQK+R+S+A + +N I FD+P S +
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD 115
++LSGGQ++R++IA L+ + P++ DE TS L + ER + +D
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDT-----ESERAIQAALD 524
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD-YTGNRT 121
LSGGQ++R++IA L+ + PI+ DE TS L + ER + +D NRT
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDT-----ESERAIQAALDELQKNRT 531
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFI-SEILDTLGLQEHKTTMTSNLSG 69
WD K + + + L + + S+ S F +E+L LG+ + +LSG
Sbjct: 401 WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 460
Query: 70 GQKKRLSIALELVNNPPIMFFDEPTSPL 97
G+ +R++IA L+ + I DEP++ L
Sbjct: 461 GELQRVAIAATLLRDADIYLLDEPSAYL 488
Score = 33.5 bits (75), Expect = 0.037, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+ +R++IA L+ FFDEP+S L
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYL 245
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFI-SEILDTLGLQEHKTTMTSNLSG 69
WD K + + + L + + S+ S F +E+L LG+ + +LSG
Sbjct: 415 WDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474
Query: 70 GQKKRLSIALELVNNPPIMFFDEPTSPL 97
G+ +R++IA L+ + I DEP++ L
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYL 502
Score = 33.5 bits (75), Expect = 0.037, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+ +R++IA L+ FFDEP+S L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYL 259
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA LV P ++ DEP S L
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNL 164
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L L + K LSGGQ++R++I LV P + DEP S L A
Sbjct: 117 VAEVLQLAHLLDRKP---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L L + K LSGGQ++R++I LV P + DEP S L A
Sbjct: 117 VAEVLQLAHLLDRKP---KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ L ++E + LSGGQ++R+++A +V P ++ DEP S L
Sbjct: 128 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 173
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ L ++E + LSGGQ++R+++A +V P ++ DEP S L
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+K+R++IA ++ P I+ DE TS L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
LSGG+K+R++IA +V+ P I+ DEP L +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
LSGG+K+R++IA +V+ P I+ DEP L +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
++E+L L + K LSGGQ++R++I LV P + D+P S L A
Sbjct: 117 VAEVLQLAHLLDRKP---KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAA 167
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+++ILD + H LSG Q++R+++A LV +P ++ DEP S L
Sbjct: 124 VAKILDIHHVLNH---FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+ LG+ + LSGG+++R+++A LV P ++ DEP S
Sbjct: 112 EKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 32 VLAAMFNQSQAGSCFISEILDTLGLQEHKTTM-TSNLSGGQKKRLSIALELVNNPPIMFF 90
VL +F I + L G + M S LSGG K +L++A ++ N I+
Sbjct: 513 VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLL 572
Query: 91 DEPTSPL 97
DEPT+ L
Sbjct: 573 DEPTNHL 579
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-------ISEILDTLGLQEHKTTMTS 65
S+D P + S+ MV ++ A F I E LGL + +
Sbjct: 839 SVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR 898
Query: 66 --NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
LSGGQK +L +A P ++ DEPT+ L +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR 934
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
++L +G LS G+K+R+ IA L P ++ DEP + L
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGL 192
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
S LSGG K +L++A ++ N I+ DEPT+ L
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHL 579
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 47 ISEILDTLGLQEHKTTMTS--NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
I E LGL + + LSGGQK +L +A P ++ DEPT+ L +
Sbjct: 880 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR 934
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 0.060, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
S LSGG K +L++A ++ N I+ DEPT+ L
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHL 573
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 47 ISEILDTLGLQEHKTTMTS--NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHK 99
I E LGL + + LSGGQK +L +A P ++ DEPT+ L +
Sbjct: 874 IEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR 928
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
S LSGGQ++ +++A L+ P ++ D+ TS L
Sbjct: 153 SQLSGGQRQAVALARALIRKPCVLILDDATSAL 185
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ GL E S S G ++L IA L+ NP + DEPTS L
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA 100
+ LD L L ++LSGGQ++ + IA + + ++ DEPTS L A
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+IL+ L L LSGGQ K + I L+ NP ++ DEP +
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+IL+ L L LSGGQ K + I L+ NP ++ DEP +
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
S F E+ L L + ++LSGG+ ++L IA L + D+P+S L E
Sbjct: 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
LSGG +RL +A L+ + FD+P+S L E
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 59 HKTTMTSN---LSGGQKKRLSIALELVNNPPIMFFDEPTS 95
++T +T N LS GQ++ L+I + NP I+ DE TS
Sbjct: 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 56 LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
L+E + LSGG+++ L+I L + P ++ DEP+ L
Sbjct: 129 LKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++ +++A L+ P ++ D+ TS L
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSAL 187
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+ +R +I + V + FDEP+S L
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYL 252
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
F ++++ L + + +LSGG+ +R++I L L I DEP++ L
Sbjct: 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+IL+ L L LSGGQ K + I L+ NP ++ D+P +
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIA 182
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++ +++A L+ P ++ D TS L
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSAL 187
>pdb|2JBL|C Chain C, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3T6E|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
Length = 356
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY 116
PP + + EPT PL+ E TP + +V+T+ Y
Sbjct: 162 PPYVRYLEPTLPLNNRE-TPTHVERVETRSGY 192
>pdb|3T6D|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-08
Length = 356
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY 116
PP + + EPT PL+ E TP + +V+T+ Y
Sbjct: 162 PPYVRYLEPTLPLNNRE-TPTHVERVETRSGY 192
>pdb|1PRC|C Chain C, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|C Chain C, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|3D38|C Chain C, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture.
pdb|2WJM|C Chain C, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|C Chain C, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|3G7F|C Chain C, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
pdb|2X5U|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
pdb|4AC5|C Chain C, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 336
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY 116
PP + + EPT PL+ E TP + +V+T+ Y
Sbjct: 142 PPYVRYLEPTLPLNNRE-TPTHVERVETRSGY 172
>pdb|1VRN|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
Length = 332
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY 116
PP + + EPT PL+ E TP + +V+T+ Y
Sbjct: 142 PPYVRYLEPTLPLNNRE-TPTHVERVETRSGY 172
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIR 129
PP FF PT PL + F + KV + Y G+ T N +R
Sbjct: 339 PPFAFFPNPTYPLPNSTFA-HFVNKVPGPLSY-GSITLNSDSDVR 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,804,628
Number of Sequences: 62578
Number of extensions: 130340
Number of successful extensions: 385
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 86
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)