Query psy317
Match_columns 137
No_of_seqs 133 out of 2070
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:08:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.3E-33 7.1E-38 216.0 10.9 120 11-137 85-211 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 1.7E-31 3.7E-36 209.6 9.8 119 11-137 80-206 (248)
3 COG1135 AbcC ABC-type metal io 100.0 8.3E-31 1.8E-35 211.2 9.4 118 11-136 91-216 (339)
4 COG1125 OpuBA ABC-type proline 100.0 3.3E-30 7.1E-35 203.7 10.1 118 11-136 83-210 (309)
5 COG1136 SalX ABC-type antimicr 100.0 5.9E-29 1.3E-33 193.8 12.1 119 11-137 91-217 (226)
6 COG1117 PstB ABC-type phosphat 100.0 7.9E-29 1.7E-33 191.7 8.0 115 11-134 96-220 (253)
7 COG1127 Ttg2A ABC-type transpo 100.0 4.6E-28 1E-32 189.7 9.8 120 11-137 93-221 (263)
8 COG1137 YhbG ABC-type (unclass 99.9 1.2E-27 2.6E-32 183.7 10.0 120 12-137 88-214 (243)
9 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.1E-27 6.7E-32 186.7 11.2 116 17-136 91-213 (254)
10 COG1131 CcmA ABC-type multidru 99.9 4.1E-27 8.9E-32 189.4 12.0 120 12-137 87-212 (293)
11 COG4175 ProV ABC-type proline/ 99.9 1.3E-27 2.9E-32 193.5 8.7 118 12-137 115-240 (386)
12 COG3839 MalK ABC-type sugar tr 99.9 2E-27 4.4E-32 194.4 9.5 117 12-136 84-208 (338)
13 COG2884 FtsE Predicted ATPase 99.9 4E-27 8.6E-32 179.5 10.2 121 11-137 87-212 (223)
14 COG1118 CysA ABC-type sulfate/ 99.9 2.9E-27 6.2E-32 190.6 9.0 121 11-137 85-213 (345)
15 COG3842 PotA ABC-type spermidi 99.9 2.2E-27 4.8E-32 195.1 8.2 120 11-137 85-212 (352)
16 PRK11650 ugpC glycerol-3-phosp 99.9 1E-26 2.2E-31 191.6 11.6 119 11-137 84-210 (356)
17 TIGR03258 PhnT 2-aminoethylpho 99.9 1E-26 2.2E-31 192.0 11.7 119 11-137 87-214 (362)
18 TIGR02314 ABC_MetN D-methionin 99.9 1.4E-26 3E-31 190.1 11.7 118 12-137 91-216 (343)
19 TIGR01186 proV glycine betaine 99.9 1.5E-26 3.2E-31 191.2 11.9 119 11-137 79-205 (363)
20 PRK11432 fbpC ferric transport 99.9 1.9E-26 4.2E-31 189.6 11.9 119 11-137 86-212 (351)
21 TIGR03265 PhnT2 putative 2-ami 99.9 2.4E-26 5.3E-31 189.1 11.7 119 11-137 84-210 (353)
22 COG1120 FepC ABC-type cobalami 99.9 1.3E-26 2.7E-31 183.8 9.1 124 10-137 82-214 (258)
23 PRK11607 potG putrescine trans 99.9 4.8E-26 1E-30 188.9 12.0 119 11-137 99-225 (377)
24 COG3638 ABC-type phosphate/pho 99.9 1.6E-26 3.5E-31 180.7 8.6 122 11-137 89-223 (258)
25 TIGR00960 3a0501s02 Type II (G 99.9 6.2E-26 1.3E-30 173.4 11.6 118 12-137 89-213 (216)
26 COG1122 CbiO ABC-type cobalt t 99.9 2.3E-26 5E-31 180.3 8.9 115 15-137 92-214 (235)
27 PRK09452 potA putrescine/sperm 99.9 6.2E-26 1.3E-30 188.1 11.7 119 11-137 94-220 (375)
28 COG4555 NatA ABC-type Na+ tran 99.9 3.6E-26 7.9E-31 175.7 8.8 117 12-136 84-207 (245)
29 PRK13537 nodulation ABC transp 99.9 1.1E-25 2.4E-30 181.7 11.9 118 12-137 89-213 (306)
30 PRK10851 sulfate/thiosulfate t 99.9 1E-25 2.2E-30 185.5 11.7 121 12-137 83-212 (353)
31 TIGR01188 drrA daunorubicin re 99.9 1.4E-25 3.1E-30 180.3 11.9 118 12-137 75-199 (302)
32 COG4598 HisP ABC-type histidin 99.9 6.7E-26 1.5E-30 172.5 8.8 119 11-136 101-226 (256)
33 PRK11000 maltose/maltodextrin 99.9 1.6E-25 3.6E-30 185.0 11.8 118 12-137 84-209 (369)
34 COG0411 LivG ABC-type branched 99.9 2.7E-25 5.8E-30 174.2 11.4 123 11-136 87-224 (250)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3E-25 6.5E-30 169.6 11.4 119 12-137 91-215 (218)
36 cd03259 ABC_Carb_Solutes_like 99.9 2.5E-25 5.4E-30 169.7 10.9 117 13-137 82-206 (213)
37 cd03261 ABC_Org_Solvent_Resist 99.9 3.3E-25 7.1E-30 171.5 11.6 119 12-137 86-212 (235)
38 TIGR02211 LolD_lipo_ex lipopro 99.9 4.4E-25 9.6E-30 169.0 11.8 118 13-137 93-216 (221)
39 TIGR01187 potA spermidine/putr 99.9 4.2E-25 9E-30 179.6 11.9 118 12-137 51-176 (325)
40 cd03264 ABC_drug_resistance_li 99.9 5.9E-25 1.3E-29 167.4 11.6 118 12-137 81-204 (211)
41 TIGR02673 FtsE cell division A 99.9 5.5E-25 1.2E-29 167.8 11.3 118 12-137 88-212 (214)
42 cd03266 ABC_NatA_sodium_export 99.9 5E-25 1.1E-29 168.4 11.0 117 13-137 88-211 (218)
43 PRK10070 glycine betaine trans 99.9 6E-25 1.3E-29 183.7 12.3 118 12-137 115-240 (400)
44 PRK11153 metN DL-methionine tr 99.9 5.6E-25 1.2E-29 180.1 11.9 118 12-137 91-216 (343)
45 COG1124 DppF ABC-type dipeptid 99.9 2.8E-25 6.1E-30 174.1 9.6 117 10-136 91-216 (252)
46 cd03301 ABC_MalK_N The N-termi 99.9 6.2E-25 1.3E-29 167.3 11.2 117 13-137 82-206 (213)
47 TIGR03415 ABC_choXWV_ATP choli 99.9 5.9E-25 1.3E-29 182.8 11.9 119 11-137 114-240 (382)
48 PRK11629 lolD lipoprotein tran 99.9 9.2E-25 2E-29 169.0 12.0 119 12-137 96-220 (233)
49 PRK13536 nodulation factor exp 99.9 8.1E-25 1.8E-29 179.3 12.1 118 12-137 123-247 (340)
50 cd03225 ABC_cobalt_CbiO_domain 99.9 9.6E-25 2.1E-29 166.1 11.5 115 15-137 88-209 (211)
51 cd03265 ABC_DrrA DrrA is the A 99.9 9.1E-25 2E-29 167.5 11.4 117 13-137 83-207 (220)
52 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.8E-25 2.1E-29 167.4 11.6 116 13-136 83-206 (220)
53 COG3840 ThiQ ABC-type thiamine 99.9 2.7E-25 6E-30 168.9 8.2 118 12-137 80-205 (231)
54 cd03292 ABC_FtsE_transporter F 99.9 1E-24 2.2E-29 166.1 11.3 118 12-137 87-211 (214)
55 PRK15079 oligopeptide ABC tran 99.9 8.1E-25 1.8E-29 178.7 11.5 119 13-137 110-237 (331)
56 TIGR03522 GldA_ABC_ATP gliding 99.9 1.1E-24 2.3E-29 175.3 11.9 118 12-137 84-207 (301)
57 TIGR01288 nodI ATP-binding ABC 99.9 1.1E-24 2.3E-29 175.3 11.8 118 12-137 86-210 (303)
58 cd03218 ABC_YhbG The ABC trans 99.9 1.4E-24 3E-29 167.4 11.6 118 12-137 84-208 (232)
59 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.4E-24 2.9E-29 172.0 11.8 118 12-137 111-236 (269)
60 TIGR02142 modC_ABC molybdenum 99.9 1.7E-24 3.6E-29 177.9 12.4 116 12-137 84-207 (354)
61 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-24 3.1E-29 165.0 11.2 114 12-137 81-201 (208)
62 cd03219 ABC_Mj1267_LivG_branch 99.9 1.6E-24 3.5E-29 167.3 11.7 121 12-137 84-218 (236)
63 cd03226 ABC_cobalt_CbiO_domain 99.9 2E-24 4.3E-29 164.1 11.5 111 15-137 84-201 (205)
64 PRK13637 cbiO cobalt transport 99.9 1.7E-24 3.8E-29 173.0 11.7 114 16-137 97-220 (287)
65 TIGR01184 ntrCD nitrate transp 99.9 2.1E-24 4.5E-29 167.2 11.8 120 12-137 63-190 (230)
66 cd03297 ABC_ModC_molybdenum_tr 99.9 3.1E-24 6.7E-29 164.0 12.5 116 12-137 84-207 (214)
67 PRK10908 cell division protein 99.9 2.2E-24 4.7E-29 165.7 11.6 118 12-137 88-212 (222)
68 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.9E-24 4.1E-29 164.7 11.2 119 11-137 78-204 (211)
69 cd03296 ABC_CysA_sulfate_impor 99.9 2.1E-24 4.5E-29 167.6 11.3 121 12-137 83-212 (239)
70 cd03269 ABC_putative_ATPase Th 99.9 2.4E-24 5.2E-29 164.0 11.4 118 12-137 79-203 (210)
71 cd03263 ABC_subfamily_A The AB 99.9 2.3E-24 5E-29 164.9 11.2 118 12-137 84-207 (220)
72 cd03258 ABC_MetN_methionine_tr 99.9 2.7E-24 5.9E-29 166.0 11.7 118 12-137 91-216 (233)
73 cd03256 ABC_PhnC_transporter A 99.9 3.2E-24 6.9E-29 166.0 12.1 122 13-137 88-220 (241)
74 cd03262 ABC_HisP_GlnQ_permease 99.9 3.6E-24 7.9E-29 162.9 11.9 119 12-137 85-210 (213)
75 PRK11144 modC molybdate transp 99.9 3.4E-24 7.4E-29 176.0 12.5 112 12-137 85-204 (352)
76 PRK13647 cbiO cobalt transport 99.9 2.5E-24 5.4E-29 171.0 11.2 116 14-137 91-213 (274)
77 PRK10584 putative ABC transpor 99.9 4.1E-24 8.9E-29 164.5 11.8 119 12-137 97-221 (228)
78 PRK13651 cobalt transporter AT 99.9 2.8E-24 6E-29 173.7 11.3 115 15-137 118-240 (305)
79 COG4525 TauB ABC-type taurine 99.9 1.1E-24 2.4E-29 167.3 8.2 117 12-136 83-207 (259)
80 PRK11264 putative amino-acid A 99.9 5.2E-24 1.1E-28 166.0 12.1 119 12-137 94-219 (250)
81 TIGR02315 ABC_phnC phosphonate 99.9 4.2E-24 9.2E-29 165.7 11.6 122 13-137 89-221 (243)
82 PRK13641 cbiO cobalt transport 99.9 3.8E-24 8.2E-29 171.0 11.6 113 17-137 100-220 (287)
83 PRK11248 tauB taurine transpor 99.9 4.4E-24 9.4E-29 168.1 11.6 117 12-136 79-203 (255)
84 PRK11308 dppF dipeptide transp 99.9 4.6E-24 1E-28 173.9 12.0 118 13-137 104-230 (327)
85 PRK11022 dppD dipeptide transp 99.9 4.8E-24 1E-28 173.7 11.9 118 13-137 101-229 (326)
86 PRK13650 cbiO cobalt transport 99.9 4.8E-24 1E-28 169.8 11.2 117 14-137 93-215 (279)
87 cd03295 ABC_OpuCA_Osmoprotecti 99.9 6E-24 1.3E-28 165.3 11.4 118 12-137 84-211 (242)
88 PRK13643 cbiO cobalt transport 99.9 5.8E-24 1.3E-28 170.1 11.6 113 17-137 99-219 (288)
89 PRK11831 putative ABC transpor 99.9 7E-24 1.5E-28 167.8 11.9 119 12-137 93-219 (269)
90 PRK13634 cbiO cobalt transport 99.9 4.8E-24 1E-28 170.7 11.1 113 17-137 100-221 (290)
91 COG0444 DppD ABC-type dipeptid 99.9 3.6E-24 7.8E-29 173.2 10.4 121 10-136 97-228 (316)
92 cd03235 ABC_Metallic_Cations A 99.9 8.9E-24 1.9E-28 161.2 12.0 117 16-137 83-207 (213)
93 PRK09536 btuD corrinoid ABC tr 99.9 7.5E-24 1.6E-28 177.2 12.3 121 13-137 87-214 (402)
94 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.5E-24 1.8E-28 163.9 11.8 118 13-137 84-207 (236)
95 TIGR03608 L_ocin_972_ABC putat 99.9 8.2E-24 1.8E-28 160.3 11.2 118 11-135 84-206 (206)
96 PRK11300 livG leucine/isoleuci 99.9 9.7E-24 2.1E-28 164.9 11.7 123 12-137 89-229 (255)
97 PRK09493 glnQ glutamine ABC tr 99.9 1E-23 2.2E-28 163.6 11.6 119 12-137 86-211 (240)
98 cd03224 ABC_TM1139_LivF_branch 99.9 9.8E-24 2.1E-28 161.5 11.1 116 12-137 84-207 (222)
99 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.2E-23 2.7E-28 162.4 11.8 118 12-137 93-217 (224)
100 cd03260 ABC_PstB_phosphate_tra 99.9 8.5E-24 1.8E-28 162.7 10.8 117 13-137 91-215 (227)
101 TIGR03269 met_CoM_red_A2 methy 99.9 8.4E-24 1.8E-28 180.5 11.8 117 13-137 120-244 (520)
102 TIGR01277 thiQ thiamine ABC tr 99.9 1.3E-23 2.9E-28 160.5 11.5 118 12-137 79-204 (213)
103 PRK13631 cbiO cobalt transport 99.9 1.1E-23 2.4E-28 171.3 11.5 115 14-137 129-251 (320)
104 PRK10771 thiQ thiamine transpo 99.9 1.2E-23 2.5E-28 162.7 10.8 119 11-137 79-205 (232)
105 TIGR03411 urea_trans_UrtD urea 99.9 1.9E-23 4.2E-28 162.1 12.1 123 12-137 86-217 (242)
106 PRK13549 xylose transporter AT 99.9 9.1E-24 2E-28 179.9 11.1 120 13-137 92-218 (506)
107 PRK09473 oppD oligopeptide tra 99.9 1.5E-23 3.3E-28 171.1 11.9 118 13-137 109-237 (330)
108 COG1123 ATPase components of v 99.9 8.2E-24 1.8E-28 181.2 10.7 121 9-136 375-504 (539)
109 PRK10619 histidine/lysine/argi 99.9 2.4E-23 5.3E-28 163.3 12.4 119 12-137 101-227 (257)
110 TIGR00972 3a0107s01c2 phosphat 99.9 2.1E-23 4.6E-28 162.6 11.9 117 13-137 92-218 (247)
111 cd03299 ABC_ModC_like Archeal 99.9 1.8E-23 4E-28 162.2 11.6 119 11-137 79-205 (235)
112 PRK13646 cbiO cobalt transport 99.9 1.2E-23 2.6E-28 168.0 10.8 112 18-137 101-221 (286)
113 cd03257 ABC_NikE_OppD_transpor 99.9 2.1E-23 4.5E-28 160.0 11.7 117 14-137 95-221 (228)
114 PRK11124 artP arginine transpo 99.9 2.1E-23 4.6E-28 162.0 11.8 119 12-137 91-216 (242)
115 PRK15093 antimicrobial peptide 99.9 1.8E-23 4E-28 170.3 11.9 121 13-136 101-233 (330)
116 PRK13635 cbiO cobalt transport 99.9 1.6E-23 3.6E-28 166.8 11.3 117 14-137 93-215 (279)
117 cd03234 ABCG_White The White s 99.9 3.3E-23 7.2E-28 159.6 12.6 124 12-137 90-219 (226)
118 PRK11247 ssuB aliphatic sulfon 99.9 2.5E-23 5.5E-28 164.3 12.2 112 12-137 90-209 (257)
119 PRK13538 cytochrome c biogenes 99.9 2.6E-23 5.6E-28 158.2 11.7 115 12-135 83-202 (204)
120 cd03267 ABC_NatA_like Similar 99.9 2.1E-23 4.6E-28 162.1 11.4 118 12-137 104-229 (236)
121 TIGR03740 galliderm_ABC gallid 99.9 2.6E-23 5.7E-28 159.7 11.6 115 11-137 78-199 (223)
122 PRK13644 cbiO cobalt transport 99.9 2.1E-23 4.5E-28 165.7 11.2 116 15-137 90-210 (274)
123 PRK13636 cbiO cobalt transport 99.9 2.1E-23 4.6E-28 166.4 11.3 115 15-137 95-217 (283)
124 PRK10261 glutathione transport 99.9 1.9E-23 4.2E-28 182.3 11.9 118 13-137 116-244 (623)
125 TIGR03005 ectoine_ehuA ectoine 99.9 2.9E-23 6.3E-28 162.3 11.7 119 12-137 96-222 (252)
126 COG4181 Predicted ABC-type tra 99.9 1.3E-23 2.8E-28 158.7 9.0 116 12-135 97-219 (228)
127 PRK14247 phosphate ABC transpo 99.9 3.7E-23 8E-28 161.4 12.0 119 13-137 92-220 (250)
128 TIGR01166 cbiO cobalt transpor 99.9 2E-23 4.4E-28 156.9 10.0 100 16-120 82-186 (190)
129 PRK10895 lipopolysaccharide AB 99.9 2.7E-23 5.9E-28 161.3 11.1 119 12-137 87-212 (241)
130 PRK10762 D-ribose transporter 99.9 1.9E-23 4.2E-28 177.7 10.9 120 13-137 89-216 (501)
131 COG4161 ArtP ABC-type arginine 99.9 1.8E-23 4E-28 157.1 9.4 117 11-134 90-213 (242)
132 PRK14268 phosphate ABC transpo 99.9 3.9E-23 8.4E-28 162.4 11.7 116 13-137 103-228 (258)
133 PRK13639 cbiO cobalt transport 99.9 3.5E-23 7.7E-28 164.3 11.5 115 15-137 91-212 (275)
134 PRK13652 cbiO cobalt transport 99.9 3.6E-23 7.9E-28 164.4 11.5 115 15-137 91-213 (277)
135 PRK10261 glutathione transport 99.9 3.2E-23 6.9E-28 180.9 12.1 118 13-137 413-539 (623)
136 PRK11614 livF leucine/isoleuci 99.9 3.2E-23 7E-28 160.5 10.8 116 12-137 89-212 (237)
137 PRK13632 cbiO cobalt transport 99.9 3.3E-23 7.1E-28 164.1 11.0 117 14-137 95-217 (271)
138 COG1123 ATPase components of v 99.9 2.3E-23 5E-28 178.5 10.8 121 9-136 99-229 (539)
139 PRK09984 phosphonate/organopho 99.9 3.7E-23 8.1E-28 162.6 11.1 121 12-137 95-228 (262)
140 COG0410 LivF ABC-type branched 99.9 2E-23 4.3E-28 162.6 9.3 116 12-136 87-211 (237)
141 PRK13640 cbiO cobalt transport 99.9 3.8E-23 8.3E-28 164.8 11.3 117 14-137 96-218 (282)
142 PRK11231 fecE iron-dicitrate t 99.9 6.3E-23 1.4E-27 160.8 12.3 121 13-137 86-213 (255)
143 TIGR02770 nickel_nikD nickel i 99.9 4.8E-23 1E-27 159.2 11.4 116 14-137 75-201 (230)
144 PRK15134 microcin C ABC transp 99.9 3.9E-23 8.4E-28 176.9 11.8 119 13-137 374-501 (529)
145 TIGR02769 nickel_nikE nickel i 99.9 5.8E-23 1.3E-27 162.1 11.9 117 14-137 101-226 (265)
146 PRK11288 araG L-arabinose tran 99.9 3.3E-23 7.2E-28 176.2 11.1 120 13-137 89-215 (501)
147 PRK09700 D-allose transporter 99.9 3.7E-23 8E-28 176.2 11.3 122 13-137 90-220 (510)
148 PRK13548 hmuV hemin importer A 99.9 5.8E-23 1.3E-27 161.6 11.6 117 13-137 86-216 (258)
149 PRK13649 cbiO cobalt transport 99.9 5.3E-23 1.2E-27 163.3 11.5 113 17-137 100-220 (280)
150 PRK13638 cbiO cobalt transport 99.9 4.9E-23 1.1E-27 163.0 11.1 114 16-137 91-211 (271)
151 PRK14267 phosphate ABC transpo 99.9 6.1E-23 1.3E-27 160.4 11.5 120 12-137 94-223 (253)
152 PRK13549 xylose transporter AT 99.9 4.8E-23 1E-27 175.5 11.7 120 13-137 351-480 (506)
153 PRK15439 autoinducer 2 ABC tra 99.9 5.5E-23 1.2E-27 175.5 12.0 113 13-137 96-215 (510)
154 PRK10982 galactose/methyl gala 99.9 4.2E-23 9.1E-28 175.1 11.2 120 13-137 83-209 (491)
155 PRK09700 D-allose transporter 99.9 4.6E-23 1E-27 175.6 11.3 120 13-137 351-484 (510)
156 cd03300 ABC_PotA_N PotA is an 99.9 9.1E-23 2E-27 157.9 11.7 118 12-137 81-206 (232)
157 PRK14273 phosphate ABC transpo 99.9 8.3E-23 1.8E-27 159.8 11.6 117 13-137 98-224 (254)
158 PRK14242 phosphate transporter 99.9 9.7E-23 2.1E-27 159.2 12.0 117 13-137 97-223 (253)
159 PRK13642 cbiO cobalt transport 99.9 7.3E-23 1.6E-27 162.7 11.4 117 14-137 93-215 (277)
160 PRK13633 cobalt transporter AT 99.9 7E-23 1.5E-27 163.0 11.3 114 17-137 100-219 (280)
161 TIGR03410 urea_trans_UrtE urea 99.9 7E-23 1.5E-27 157.9 10.8 115 12-137 84-207 (230)
162 TIGR01978 sufC FeS assembly AT 99.9 1.6E-22 3.5E-27 156.6 12.9 123 12-136 86-219 (243)
163 PRK13543 cytochrome c biogenes 99.9 1.1E-22 2.4E-27 155.8 11.8 114 12-136 91-211 (214)
164 TIGR02982 heterocyst_DevA ABC 99.9 9.9E-23 2.1E-27 156.4 11.3 122 10-137 89-216 (220)
165 PRK10575 iron-hydroxamate tran 99.9 9.3E-23 2E-27 160.9 11.3 120 13-137 95-223 (265)
166 cd03231 ABC_CcmA_heme_exporter 99.9 1.5E-22 3.2E-27 153.9 11.9 112 12-135 82-198 (201)
167 PRK10253 iron-enterobactin tra 99.9 1.1E-22 2.4E-27 160.5 11.7 121 13-137 91-219 (265)
168 COG4148 ModC ABC-type molybdat 99.9 1.2E-23 2.6E-28 168.4 6.2 113 11-137 84-204 (352)
169 TIGR02324 CP_lyasePhnL phospho 99.9 1.4E-22 3E-27 155.7 11.7 117 12-136 99-223 (224)
170 TIGR03269 met_CoM_red_A2 methy 99.9 1E-22 2.2E-27 173.9 12.1 116 13-137 375-503 (520)
171 COG4172 ABC-type uncharacteriz 99.9 5.1E-23 1.1E-27 171.4 9.9 123 9-137 371-502 (534)
172 TIGR02633 xylG D-xylose ABC tr 99.9 8.5E-23 1.9E-27 173.4 11.4 120 13-137 88-216 (500)
173 TIGR02633 xylG D-xylose ABC tr 99.9 9.4E-23 2E-27 173.2 11.6 122 13-137 349-478 (500)
174 PRK03695 vitamin B12-transport 99.9 1.3E-22 2.8E-27 158.8 11.6 116 13-137 79-208 (248)
175 PRK13645 cbiO cobalt transport 99.9 8.9E-23 1.9E-27 162.9 10.7 113 17-137 105-226 (289)
176 TIGR01189 ccmA heme ABC export 99.9 1.4E-22 3E-27 153.3 11.2 106 12-126 82-192 (198)
177 PRK14241 phosphate transporter 99.9 1.6E-22 3.4E-27 158.7 11.8 118 12-136 94-221 (258)
178 PRK14256 phosphate ABC transpo 99.9 1.8E-22 4E-27 157.7 12.1 118 13-137 95-222 (252)
179 TIGR03873 F420-0_ABC_ATP propo 99.9 1.8E-22 3.9E-27 158.3 12.0 120 14-137 86-212 (256)
180 PRK13539 cytochrome c biogenes 99.9 1.9E-22 4.2E-27 153.8 11.8 112 12-135 82-198 (207)
181 PRK10744 pstB phosphate transp 99.9 1.5E-22 3.3E-27 159.2 11.5 117 13-137 104-230 (260)
182 PRK11288 araG L-arabinose tran 99.9 1.1E-22 2.4E-27 173.1 11.5 120 13-137 341-471 (501)
183 PRK13648 cbiO cobalt transport 99.9 1.6E-22 3.5E-27 159.9 11.6 117 14-137 95-217 (269)
184 PRK15439 autoinducer 2 ABC tra 99.9 1.3E-22 2.8E-27 173.2 11.8 120 13-137 351-478 (510)
185 PRK14245 phosphate ABC transpo 99.9 1.8E-22 4E-27 157.6 11.7 117 13-137 94-220 (250)
186 PRK10762 D-ribose transporter 99.9 1.3E-22 2.9E-27 172.5 11.8 120 13-137 340-470 (501)
187 PRK14269 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 157.1 11.9 118 13-137 89-216 (246)
188 PRK14235 phosphate transporter 99.9 2.2E-22 4.8E-27 159.0 12.2 118 13-137 110-237 (267)
189 TIGR00968 3a0106s01 sulfate AB 99.9 2E-22 4.4E-27 156.5 11.2 117 12-136 81-205 (237)
190 PRK15112 antimicrobial peptide 99.9 1.7E-22 3.7E-27 159.7 11.0 117 14-137 100-225 (267)
191 TIGR01257 rim_protein retinal- 99.9 1.4E-22 3.1E-27 193.7 12.2 118 12-137 1012-1135(2272)
192 PRK14244 phosphate ABC transpo 99.9 2.8E-22 6E-27 156.7 11.7 118 13-137 96-223 (251)
193 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.9E-22 6.2E-27 157.4 11.6 111 14-136 72-190 (246)
194 PRK14250 phosphate ABC transpo 99.9 2.9E-22 6.3E-27 156.0 11.5 111 14-137 88-207 (241)
195 PRK14240 phosphate transporter 99.9 3.6E-22 7.8E-27 155.8 12.0 117 13-137 94-220 (250)
196 PRK15134 microcin C ABC transp 99.9 2E-22 4.4E-27 172.4 11.4 117 14-137 105-232 (529)
197 PRK14239 phosphate transporter 99.9 3.4E-22 7.3E-27 155.9 11.6 117 13-137 96-222 (252)
198 TIGR03771 anch_rpt_ABC anchore 99.9 4.2E-22 9.2E-27 153.6 11.9 115 17-135 65-186 (223)
199 cd03252 ABCC_Hemolysin The ABC 99.9 2.5E-22 5.5E-27 155.3 10.5 119 15-137 87-211 (237)
200 PRK11701 phnK phosphonate C-P 99.9 4.4E-22 9.6E-27 156.2 11.9 117 14-137 102-227 (258)
201 PRK14260 phosphate ABC transpo 99.9 4.5E-22 9.7E-27 156.4 11.8 116 13-136 98-223 (259)
202 TIGR00955 3a01204 The Eye Pigm 99.9 2.4E-22 5.1E-27 175.3 11.1 125 11-137 107-242 (617)
203 PLN03211 ABC transporter G-25; 99.9 3E-22 6.5E-27 176.1 11.8 124 12-137 149-282 (659)
204 PRK14259 phosphate ABC transpo 99.9 4.1E-22 8.9E-27 157.8 11.4 114 13-136 104-227 (269)
205 PRK14270 phosphate ABC transpo 99.9 5.7E-22 1.2E-26 154.9 11.9 117 13-137 95-221 (251)
206 PRK10247 putative ABC transpor 99.9 5.8E-22 1.3E-26 152.9 11.8 113 14-136 92-211 (225)
207 COG4152 ABC-type uncharacteriz 99.9 1.8E-22 3.9E-27 159.1 9.0 116 13-136 82-204 (300)
208 PRK14249 phosphate ABC transpo 99.9 6.4E-22 1.4E-26 154.6 11.9 116 13-136 95-220 (251)
209 PRK14262 phosphate ABC transpo 99.9 6.2E-22 1.4E-26 154.4 11.8 117 13-137 94-220 (250)
210 cd03248 ABCC_TAP TAP, the Tran 99.9 2.6E-22 5.7E-27 154.3 9.4 117 17-137 101-223 (226)
211 cd03251 ABCC_MsbA MsbA is an e 99.9 5.4E-22 1.2E-26 153.1 11.0 120 13-137 86-211 (234)
212 PRK14272 phosphate ABC transpo 99.9 7.6E-22 1.6E-26 153.9 11.9 119 12-137 94-222 (252)
213 TIGR02323 CP_lyasePhnK phospho 99.9 8E-22 1.7E-26 154.1 11.9 117 14-137 99-224 (253)
214 PRK14248 phosphate ABC transpo 99.9 6.6E-22 1.4E-26 156.1 11.6 116 13-136 112-237 (268)
215 PRK14246 phosphate ABC transpo 99.9 8.4E-22 1.8E-26 155.2 12.1 120 11-137 98-227 (257)
216 PRK14275 phosphate ABC transpo 99.9 7.6E-22 1.6E-26 157.7 11.8 117 13-137 130-256 (286)
217 PRK14251 phosphate ABC transpo 99.9 7.6E-22 1.7E-26 154.0 11.4 117 13-137 95-221 (251)
218 TIGR01257 rim_protein retinal- 99.9 4.2E-22 9.1E-27 190.5 11.6 118 12-137 2021-2145(2272)
219 PRK14258 phosphate ABC transpo 99.9 1.2E-21 2.5E-26 154.3 12.3 117 13-137 98-226 (261)
220 PRK10418 nikD nickel transport 99.9 1.1E-21 2.3E-26 153.9 12.0 113 15-137 93-216 (254)
221 PRK14253 phosphate ABC transpo 99.9 1.1E-21 2.5E-26 152.9 12.0 117 13-137 93-219 (249)
222 COG4172 ABC-type uncharacteriz 99.9 3.7E-22 8E-27 166.3 9.7 120 10-136 102-232 (534)
223 PRK14274 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 154.1 11.7 116 13-136 103-228 (259)
224 PRK13409 putative ATPase RIL; 99.9 9.1E-22 2E-26 171.2 12.2 112 13-137 410-529 (590)
225 CHL00131 ycf16 sulfate ABC tra 99.9 1.8E-21 3.9E-26 151.8 12.5 125 12-136 93-226 (252)
226 PRK13545 tagH teichoic acids e 99.9 9.2E-22 2E-26 169.1 11.7 117 13-137 95-218 (549)
227 PRK14255 phosphate ABC transpo 99.9 1.4E-21 3.1E-26 152.6 11.8 117 13-137 96-222 (252)
228 PRK13547 hmuV hemin importer A 99.9 1.2E-21 2.6E-26 155.9 11.3 119 14-137 94-230 (272)
229 PRK14254 phosphate ABC transpo 99.9 1.5E-21 3.2E-26 156.1 11.8 114 13-136 130-254 (285)
230 cd03245 ABCC_bacteriocin_expor 99.9 1.1E-21 2.3E-26 150.2 10.2 107 18-137 92-213 (220)
231 PRK13546 teichoic acids export 99.9 2E-21 4.3E-26 154.1 12.0 116 13-136 95-217 (264)
232 PRK14236 phosphate transporter 99.9 1.8E-21 4E-26 154.2 11.7 117 13-137 116-242 (272)
233 PRK10982 galactose/methyl gala 99.9 1E-21 2.2E-26 166.6 10.9 92 43-137 367-466 (491)
234 PRK13541 cytochrome c biogenes 99.9 1.8E-21 3.9E-26 147.1 11.1 104 13-126 80-188 (195)
235 PRK14257 phosphate ABC transpo 99.9 1.8E-21 3.9E-26 158.9 11.9 116 15-137 174-299 (329)
236 PRK14237 phosphate transporter 99.9 2.2E-21 4.9E-26 153.3 11.9 117 13-137 111-237 (267)
237 PRK14263 phosphate ABC transpo 99.9 2.6E-21 5.6E-26 152.8 12.3 111 17-136 102-222 (261)
238 PRK14271 phosphate ABC transpo 99.9 2.3E-21 5.1E-26 154.2 12.0 117 13-137 111-237 (276)
239 cd03254 ABCC_Glucan_exporter_l 99.9 1.5E-21 3.2E-26 150.2 10.4 87 49-137 120-212 (229)
240 PRK14261 phosphate ABC transpo 99.9 2.2E-21 4.8E-26 151.7 11.4 117 13-137 97-223 (253)
241 PRK10938 putative molybdenum t 99.9 1E-21 2.2E-26 166.5 10.2 91 44-137 113-210 (490)
242 PRK13540 cytochrome c biogenes 99.9 2.7E-21 5.9E-26 146.6 11.2 103 12-124 83-190 (200)
243 PRK10419 nikE nickel transport 99.9 3.7E-21 7.9E-26 152.3 12.3 116 14-136 102-226 (268)
244 cd03253 ABCC_ATM1_transporter 99.9 2.3E-21 5E-26 149.7 10.9 120 13-137 85-210 (236)
245 PRK14265 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 152.9 12.0 113 14-136 112-234 (274)
246 PRK14243 phosphate transporter 99.9 3.4E-21 7.3E-26 152.1 11.7 114 13-136 101-224 (264)
247 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2E-21 4.3E-26 150.5 10.1 117 17-137 90-212 (238)
248 PRK14238 phosphate transporter 99.9 3E-21 6.5E-26 153.0 11.3 117 13-137 115-241 (271)
249 PRK14266 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 150.2 11.4 116 13-136 94-219 (250)
250 PRK15177 Vi polysaccharide exp 99.9 2.8E-21 6.2E-26 148.5 10.3 115 12-137 58-178 (213)
251 cd03244 ABCC_MRP_domain2 Domai 99.9 3.4E-21 7.3E-26 147.5 10.3 109 15-137 89-212 (221)
252 PRK09544 znuC high-affinity zi 99.9 3.1E-21 6.6E-26 151.8 9.9 89 45-136 99-195 (251)
253 TIGR00956 3a01205 Pleiotropic 99.9 4.2E-21 9E-26 179.7 12.1 124 12-137 845-978 (1394)
254 PRK15064 ABC transporter ATP-b 99.9 8.1E-21 1.8E-25 162.6 12.9 91 44-137 132-227 (530)
255 PLN03140 ABC transporter G fam 99.9 5.4E-21 1.2E-25 179.5 12.6 123 12-136 962-1094(1470)
256 PRK11174 cysteine/glutathione 99.8 6.3E-21 1.4E-25 164.5 11.9 120 9-137 428-558 (588)
257 COG1129 MglA ABC-type sugar tr 99.8 4.4E-21 9.4E-26 163.4 10.6 122 12-137 92-220 (500)
258 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.9E-21 1.3E-25 164.4 11.4 113 14-136 397-514 (552)
259 PRK15056 manganese/iron transp 99.8 7.1E-21 1.5E-25 150.8 10.6 89 44-135 120-215 (272)
260 PRK11819 putative ABC transpor 99.8 7.4E-21 1.6E-25 164.0 11.4 114 13-136 398-516 (556)
261 cd03214 ABC_Iron-Siderophores_ 99.8 5.5E-21 1.2E-25 143.0 9.1 86 49-137 80-173 (180)
262 PRK11819 putative ABC transpor 99.8 1.5E-20 3.2E-25 162.1 13.1 90 44-137 142-235 (556)
263 PRK14252 phosphate ABC transpo 99.8 1.4E-20 3E-25 148.4 11.6 117 13-137 109-235 (265)
264 KOG0061|consensus 99.8 3.8E-21 8.3E-26 168.0 9.0 125 10-136 111-245 (613)
265 PRK15064 ABC transporter ATP-b 99.8 1.4E-20 3E-25 161.2 11.9 111 14-137 395-510 (530)
266 PRK10938 putative molybdenum t 99.8 7.7E-21 1.7E-25 161.1 10.2 94 44-137 378-478 (490)
267 PRK09580 sufC cysteine desulfu 99.8 1.9E-20 4E-25 145.6 11.0 93 44-136 121-220 (248)
268 cd03250 ABCC_MRP_domain1 Domai 99.8 2.2E-20 4.9E-25 141.7 10.9 115 16-137 78-202 (204)
269 PRK14264 phosphate ABC transpo 99.8 3.5E-20 7.5E-25 149.5 12.1 119 14-136 137-274 (305)
270 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.9E-20 4E-25 149.6 10.3 111 12-137 86-211 (275)
271 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 4.4E-20 9.5E-25 159.0 13.0 89 45-137 141-233 (552)
272 PRK10535 macrolide transporter 99.8 3.5E-20 7.6E-25 162.6 12.4 121 10-137 93-218 (648)
273 PRK11160 cysteine/glutathione 99.8 3.1E-20 6.8E-25 160.5 11.4 116 9-137 419-548 (574)
274 cd03290 ABCC_SUR1_N The SUR do 99.8 4.4E-20 9.5E-25 141.4 10.9 76 60-137 134-216 (218)
275 cd03271 ABC_UvrA_II The excisi 99.8 5.9E-20 1.3E-24 146.1 11.9 108 15-135 128-244 (261)
276 PRK11176 lipid transporter ATP 99.8 2.5E-20 5.4E-25 160.5 10.3 117 9-137 422-553 (582)
277 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.2E-20 7E-25 163.0 11.1 114 10-137 533-659 (686)
278 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.2E-20 7E-25 163.4 10.8 116 9-137 558-686 (710)
279 COG4608 AppF ABC-type oligopep 99.8 2.7E-20 5.9E-25 147.9 8.7 91 43-136 85-184 (268)
280 TIGR01192 chvA glucan exporter 99.8 7.3E-20 1.6E-24 158.6 11.7 119 10-137 415-544 (585)
281 TIGR01842 type_I_sec_PrtD type 99.8 7.1E-20 1.5E-24 157.1 11.5 123 10-137 398-528 (544)
282 PRK11147 ABC transporter ATPas 99.8 5.7E-20 1.2E-24 160.8 11.0 114 13-136 393-511 (635)
283 TIGR02203 MsbA_lipidA lipid A 99.8 5.3E-20 1.1E-24 157.9 10.5 117 9-137 411-542 (571)
284 cd03369 ABCC_NFT1 Domain 2 of 99.8 9.9E-20 2.2E-24 138.4 10.9 76 60-137 119-198 (207)
285 cd03238 ABC_UvrA The excision 99.8 8.1E-20 1.7E-24 137.6 10.2 88 48-137 68-163 (176)
286 cd03270 ABC_UvrA_I The excisio 99.8 2.9E-19 6.3E-24 138.5 13.5 86 48-135 118-211 (226)
287 TIGR00954 3a01203 Peroxysomal 99.8 9.7E-20 2.1E-24 160.1 12.0 119 11-136 522-652 (659)
288 cd03215 ABC_Carb_Monos_II This 99.8 8E-20 1.7E-24 136.9 9.8 68 67-137 105-179 (182)
289 COG4604 CeuD ABC-type enteroch 99.8 1.2E-20 2.5E-25 145.2 5.2 117 14-136 86-210 (252)
290 PRK13657 cyclic beta-1,2-gluca 99.8 1E-19 2.2E-24 157.3 11.5 115 10-137 415-544 (588)
291 PRK10636 putative ABC transpor 99.8 6.1E-20 1.3E-24 160.8 10.2 91 44-137 126-221 (638)
292 cd03236 ABC_RNaseL_inhibitor_d 99.8 1E-19 2.2E-24 143.8 10.5 90 44-136 117-213 (255)
293 PRK10790 putative multidrug tr 99.8 1E-19 2.2E-24 157.3 11.4 114 10-137 421-549 (592)
294 COG4674 Uncharacterized ABC-ty 99.8 3.2E-20 7E-25 142.6 7.3 123 11-136 89-220 (249)
295 cd03223 ABCD_peroxisomal_ALDP 99.8 1.3E-19 2.8E-24 134.4 10.3 73 63-137 88-162 (166)
296 cd03232 ABC_PDR_domain2 The pl 99.8 1.7E-19 3.7E-24 136.3 11.1 72 66-137 108-184 (192)
297 TIGR02857 CydD thiol reductant 99.8 9E-20 2E-24 155.6 10.2 113 10-135 402-529 (529)
298 cd03288 ABCC_SUR2 The SUR doma 99.8 1.6E-19 3.5E-24 141.9 10.8 89 47-137 135-229 (257)
299 COG1101 PhnK ABC-type uncharac 99.8 8.2E-20 1.8E-24 142.0 8.9 124 10-136 89-223 (263)
300 cd03233 ABC_PDR_domain1 The pl 99.8 2.1E-19 4.6E-24 136.8 10.9 76 60-137 112-195 (202)
301 TIGR00956 3a01205 Pleiotropic 99.8 1.1E-19 2.4E-24 170.2 11.2 124 12-137 147-286 (1394)
302 TIGR00958 3a01208 Conjugate Tr 99.8 1.3E-19 2.7E-24 160.3 10.8 116 9-137 560-688 (711)
303 COG3845 ABC-type uncharacteriz 99.8 9.9E-20 2.2E-24 153.9 9.6 121 11-136 87-214 (501)
304 cd03213 ABCG_EPDR ABCG transpo 99.8 2.8E-19 6E-24 135.4 11.2 72 66-137 111-187 (194)
305 cd03230 ABC_DR_subfamily_A Thi 99.8 1.9E-19 4.1E-24 133.9 10.0 68 67-137 96-170 (173)
306 TIGR02868 CydC thiol reductant 99.8 1.2E-19 2.5E-24 155.0 10.1 101 9-120 413-528 (529)
307 PRK13409 putative ATPase RIL; 99.8 1.4E-19 2.9E-24 157.7 10.5 89 45-136 191-285 (590)
308 TIGR02204 MsbA_rel ABC transpo 99.8 1.7E-19 3.7E-24 155.1 10.8 116 9-137 419-549 (576)
309 COG1119 ModF ABC-type molybden 99.8 1.2E-19 2.6E-24 142.6 8.9 93 43-136 148-247 (257)
310 TIGR03375 type_I_sec_LssB type 99.8 1.6E-19 3.5E-24 158.8 10.7 116 9-137 544-674 (694)
311 TIGR01846 type_I_sec_HlyB type 99.8 1.9E-19 4E-24 158.5 11.0 119 10-137 537-666 (694)
312 PRK11147 ABC transporter ATPas 99.8 2.4E-19 5.3E-24 156.8 10.4 89 44-137 136-228 (635)
313 COG1132 MdlB ABC-type multidru 99.8 3.9E-19 8.4E-24 153.1 11.0 118 10-136 409-537 (567)
314 PRK10636 putative ABC transpor 99.8 2.5E-19 5.5E-24 157.0 9.9 91 44-137 407-502 (638)
315 TIGR01193 bacteriocin_ABC ABC- 99.8 3E-19 6.6E-24 157.3 10.4 117 9-137 553-683 (708)
316 COG4619 ABC-type uncharacteriz 99.8 2E-19 4.3E-24 135.7 7.8 115 11-136 85-208 (223)
317 PRK10789 putative multidrug tr 99.8 4.2E-19 9.2E-24 153.3 10.5 114 11-137 396-524 (569)
318 COG4988 CydD ABC-type transpor 99.8 5.6E-19 1.2E-23 151.6 11.0 113 10-136 401-528 (559)
319 COG2274 SunT ABC-type bacterio 99.8 4.7E-19 1E-23 156.9 10.4 122 10-136 553-681 (709)
320 cd03229 ABC_Class3 This class 99.8 5E-19 1.1E-23 132.1 9.0 70 67-137 101-176 (178)
321 PTZ00265 multidrug resistance 99.8 4.3E-19 9.3E-24 166.8 10.3 115 10-137 1302-1433(1466)
322 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.2E-18 2.7E-23 139.6 11.5 76 60-137 153-233 (282)
323 PLN03073 ABC transporter F fam 99.8 5.9E-19 1.3E-23 156.6 10.4 91 44-137 604-699 (718)
324 COG4987 CydC ABC-type transpor 99.8 3.7E-19 8.1E-24 151.8 8.2 115 8-136 416-546 (573)
325 PLN03073 ABC transporter F fam 99.8 7.5E-19 1.6E-23 155.9 10.3 91 44-137 321-416 (718)
326 cd03247 ABCC_cytochrome_bd The 99.8 7.5E-19 1.6E-23 131.0 8.3 72 64-137 96-171 (178)
327 cd03246 ABCC_Protease_Secretio 99.8 9.4E-19 2E-23 130.1 8.1 69 67-137 97-170 (173)
328 KOG0057|consensus 99.8 1.1E-18 2.3E-23 149.2 9.3 114 9-136 430-559 (591)
329 cd03216 ABC_Carb_Monos_I This 99.8 1.1E-18 2.4E-23 128.9 8.2 68 67-137 83-157 (163)
330 PLN03140 ABC transporter G fam 99.8 1.1E-18 2.4E-23 164.0 9.4 91 47-137 312-413 (1470)
331 cd03228 ABCC_MRP_Like The MRP 99.8 1.5E-18 3.3E-23 128.7 8.2 69 67-137 97-169 (171)
332 KOG0059|consensus 99.8 1.1E-18 2.3E-23 157.9 8.5 116 12-135 649-771 (885)
333 COG1129 MglA ABC-type sugar tr 99.8 2.7E-18 5.9E-23 146.4 10.4 125 10-137 344-476 (500)
334 COG4559 ABC-type hemin transpo 99.8 2.4E-18 5.3E-23 133.5 9.0 123 9-137 80-216 (259)
335 PLN03232 ABC transporter C fam 99.8 2.5E-18 5.3E-23 162.0 10.6 114 10-137 685-814 (1495)
336 COG4136 ABC-type uncharacteriz 99.8 6.1E-19 1.3E-23 131.3 4.6 115 11-133 85-205 (213)
337 PTZ00265 multidrug resistance 99.8 3.5E-18 7.6E-23 160.7 10.6 91 45-137 547-654 (1466)
338 PRK10522 multidrug transporter 99.8 5.2E-18 1.1E-22 145.8 10.8 92 44-137 422-524 (547)
339 KOG0055|consensus 99.8 5.4E-18 1.2E-22 155.2 11.2 113 14-136 437-561 (1228)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 3.7E-18 8E-23 124.1 8.2 71 64-137 68-142 (144)
341 PTZ00243 ABC transporter; Prov 99.8 7.7E-18 1.7E-22 159.2 12.4 117 15-137 732-856 (1560)
342 cd03217 ABC_FeS_Assembly ABC-t 99.8 3.7E-18 8.1E-23 129.7 8.4 73 62-137 100-180 (200)
343 TIGR01194 cyc_pep_trnsptr cycl 99.7 6.9E-18 1.5E-22 145.5 10.8 92 44-137 442-545 (555)
344 PLN03130 ABC transporter C fam 99.7 8.3E-18 1.8E-22 159.4 11.4 114 10-137 685-814 (1622)
345 PLN03232 ABC transporter C fam 99.7 6E-18 1.3E-22 159.5 10.3 115 9-137 1315-1444(1495)
346 cd03222 ABC_RNaseL_inhibitor T 99.7 7.6E-18 1.6E-22 127.0 8.3 68 67-137 72-147 (177)
347 COG4133 CcmA ABC-type transpor 99.7 1.5E-17 3.3E-22 126.7 9.3 103 11-121 83-190 (209)
348 PLN03130 ABC transporter C fam 99.7 1.2E-17 2.6E-22 158.3 10.7 115 9-137 1318-1447(1622)
349 cd03273 ABC_SMC2_euk Eukaryoti 99.7 2.4E-17 5.3E-22 129.1 10.2 116 13-133 96-239 (251)
350 TIGR00957 MRP_assoc_pro multi 99.7 1.9E-17 4.1E-22 156.3 11.3 117 11-137 706-836 (1522)
351 cd03278 ABC_SMC_barmotin Barmo 99.7 1.8E-17 3.9E-22 126.4 8.9 87 45-136 95-189 (197)
352 KOG0058|consensus 99.7 2E-17 4.3E-22 144.9 9.7 114 13-135 551-675 (716)
353 TIGR01271 CFTR_protein cystic 99.7 4.8E-17 1E-21 153.4 12.7 117 13-136 497-621 (1490)
354 TIGR01271 CFTR_protein cystic 99.7 2.7E-17 5.8E-22 155.1 10.8 115 9-137 1297-1426(1490)
355 COG4107 PhnK ABC-type phosphon 99.7 3.5E-17 7.5E-22 124.6 9.3 90 43-135 127-225 (258)
356 PRK00635 excinuclease ABC subu 99.7 5.5E-17 1.2E-21 153.7 12.1 118 14-136 759-885 (1809)
357 PRK00349 uvrA excinuclease ABC 99.7 3.1E-17 6.7E-22 149.0 9.6 117 16-135 435-563 (943)
358 cd03276 ABC_SMC6_euk Eukaryoti 99.7 3.1E-17 6.7E-22 125.2 8.2 86 45-136 91-189 (198)
359 PTZ00243 ABC transporter; Prov 99.7 4.9E-17 1.1E-21 153.8 11.1 115 9-137 1389-1519(1560)
360 TIGR00957 MRP_assoc_pro multi 99.7 5.5E-17 1.2E-21 153.2 10.6 114 9-137 1365-1494(1522)
361 COG4586 ABC-type uncharacteriz 99.7 5.1E-17 1.1E-21 129.9 8.6 93 43-136 133-231 (325)
362 TIGR00630 uvra excinuclease AB 99.7 1.5E-16 3.4E-21 144.2 12.1 85 49-135 469-561 (924)
363 PRK00349 uvrA excinuclease ABC 99.7 1.7E-16 3.6E-21 144.2 12.1 106 17-135 791-905 (943)
364 COG0488 Uup ATPase components 99.7 7.1E-17 1.5E-21 139.2 8.7 77 44-122 132-211 (530)
365 cd03279 ABC_sbcCD SbcCD and ot 99.7 9.3E-17 2E-21 123.2 8.2 83 51-136 108-207 (213)
366 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.2E-16 2.5E-21 116.8 8.2 68 67-137 81-155 (157)
367 KOG0055|consensus 99.7 1.5E-16 3.2E-21 145.8 10.3 116 12-136 1072-1198(1228)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.7E-16 3.6E-21 123.1 8.9 81 54-136 146-234 (243)
369 TIGR00630 uvra excinuclease AB 99.7 5.1E-16 1.1E-20 140.8 11.7 88 46-135 807-903 (924)
370 cd03274 ABC_SMC4_euk Eukaryoti 99.6 4.3E-16 9.3E-21 120.1 6.2 87 48-136 109-203 (212)
371 cd03275 ABC_SMC1_euk Eukaryoti 99.6 1.6E-15 3.5E-20 118.8 9.2 91 44-136 111-232 (247)
372 COG4778 PhnL ABC-type phosphon 99.6 9E-16 2E-20 116.3 6.7 93 43-136 128-226 (235)
373 KOG0054|consensus 99.6 1.5E-15 3.3E-20 141.3 9.6 113 10-137 588-717 (1381)
374 PRK00635 excinuclease ABC subu 99.6 1.4E-15 3E-20 144.3 9.2 84 50-136 459-551 (1809)
375 KOG0065|consensus 99.6 4.5E-16 9.8E-21 143.2 4.1 110 11-122 872-991 (1391)
376 PF00005 ABC_tran: ABC transpo 99.6 2.1E-15 4.4E-20 107.0 5.5 52 44-95 82-137 (137)
377 cd03240 ABC_Rad50 The catalyti 99.6 4.2E-15 9.1E-20 113.8 7.3 74 61-136 110-196 (204)
378 COG0488 Uup ATPase components 99.6 6.9E-15 1.5E-19 126.9 9.5 107 16-136 399-510 (530)
379 KOG0062|consensus 99.5 1.8E-14 3.9E-19 122.9 8.1 77 44-120 175-254 (582)
380 COG4618 ArpD ABC-type protease 99.5 6.8E-14 1.5E-18 119.4 10.9 125 8-137 414-546 (580)
381 COG0396 sufC Cysteine desulfur 99.5 1.1E-13 2.5E-18 108.3 11.2 126 10-137 88-220 (251)
382 COG4167 SapF ABC-type antimicr 99.5 4.2E-14 9E-19 108.5 8.4 90 43-135 125-223 (267)
383 COG1134 TagH ABC-type polysacc 99.5 5.8E-14 1.3E-18 110.5 9.2 117 12-136 98-221 (249)
384 cd03277 ABC_SMC5_euk Eukaryoti 99.5 2.9E-14 6.4E-19 110.0 7.3 80 58-137 118-209 (213)
385 cd03239 ABC_SMC_head The struc 99.5 1.9E-13 4.1E-18 102.8 8.2 68 67-136 95-171 (178)
386 KOG0927|consensus 99.5 1.5E-13 3.3E-18 117.9 7.9 78 43-120 197-278 (614)
387 PHA02562 46 endonuclease subun 99.5 2.5E-13 5.3E-18 116.6 8.6 73 62-136 464-550 (562)
388 COG3845 ABC-type uncharacteriz 99.5 2.6E-13 5.7E-18 115.2 8.6 124 11-137 345-478 (501)
389 COG5265 ATM1 ABC-type transpor 99.5 1.8E-13 3.9E-18 114.8 7.5 119 9-137 342-472 (497)
390 COG4178 ABC-type uncharacteriz 99.4 2.3E-13 5E-18 118.5 8.2 111 9-128 461-581 (604)
391 KOG0062|consensus 99.4 3.5E-13 7.6E-18 115.1 8.5 92 43-137 458-554 (582)
392 cd03241 ABC_RecN RecN ATPase i 99.4 4.4E-13 9.6E-18 106.7 7.8 70 65-136 169-246 (276)
393 COG4170 SapD ABC-type antimicr 99.4 1.1E-13 2.3E-18 108.4 3.7 86 43-128 132-226 (330)
394 KOG0927|consensus 99.4 2.4E-13 5.3E-18 116.6 6.2 81 44-127 486-569 (614)
395 COG1245 Predicted ATPase, RNas 99.4 8.8E-13 1.9E-17 111.8 7.3 87 46-135 193-286 (591)
396 TIGR00634 recN DNA repair prot 99.4 1.2E-12 2.5E-17 113.7 7.7 69 65-136 439-516 (563)
397 TIGR00618 sbcc exonuclease Sbc 99.4 1.5E-12 3.3E-17 119.6 8.4 77 57-136 941-1034(1042)
398 cd03227 ABC_Class2 ABC-type Cl 99.4 2.7E-12 5.8E-17 94.7 7.4 70 65-136 76-154 (162)
399 COG1245 Predicted ATPase, RNas 99.3 1.3E-12 2.8E-17 110.8 6.0 88 46-136 435-530 (591)
400 PRK10869 recombination and rep 99.3 5.9E-12 1.3E-16 109.3 8.2 68 66-136 430-506 (553)
401 COG0178 UvrA Excinuclease ATPa 99.3 2E-11 4.3E-16 108.9 10.4 86 45-133 800-895 (935)
402 KOG0056|consensus 99.3 3.2E-12 7E-17 109.5 5.1 119 9-136 617-746 (790)
403 PRK03918 chromosome segregatio 99.3 8.1E-12 1.8E-16 112.2 7.4 74 61-136 783-867 (880)
404 PRK01156 chromosome segregatio 99.3 2.6E-11 5.6E-16 109.7 10.5 89 46-136 765-883 (895)
405 KOG0054|consensus 99.3 1.9E-11 4.2E-16 114.2 8.8 114 9-137 1219-1348(1381)
406 TIGR00606 rad50 rad50. This fa 99.2 1.6E-11 3.5E-16 115.1 8.1 68 61-128 1194-1277(1311)
407 KOG0066|consensus 99.2 2.1E-11 4.5E-16 103.7 7.2 77 45-121 682-761 (807)
408 cd03280 ABC_MutS2 MutS2 homolo 99.2 4.1E-12 8.9E-17 96.5 2.6 76 47-124 72-153 (200)
409 PRK10246 exonuclease subunit S 99.2 2.9E-11 6.2E-16 111.5 8.5 62 60-121 943-1017(1047)
410 TIGR02168 SMC_prok_B chromosom 99.2 1.8E-11 4E-16 111.2 6.6 74 60-135 1083-1164(1179)
411 KOG0065|consensus 99.2 2.9E-12 6.4E-17 118.5 0.4 126 10-137 196-337 (1391)
412 COG4138 BtuD ABC-type cobalami 99.2 5.6E-12 1.2E-16 96.2 1.1 90 43-135 102-205 (248)
413 cd03242 ABC_RecF RecF is a rec 99.2 7.4E-11 1.6E-15 93.7 7.5 63 64-126 181-253 (270)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.1 4.8E-11 1E-15 92.7 3.9 77 46-126 72-157 (222)
415 TIGR02169 SMC_prok_A chromosom 99.1 1.8E-10 3.9E-15 105.2 7.0 74 61-136 1069-1150(1164)
416 PRK00064 recF recombination pr 99.1 3.3E-10 7.2E-15 93.7 7.5 73 63-135 270-354 (361)
417 KOG0066|consensus 99.1 7.1E-11 1.5E-15 100.5 3.3 78 43-120 388-468 (807)
418 TIGR00611 recf recF protein. A 99.1 2.8E-10 6.1E-15 94.4 6.3 62 65-126 274-346 (365)
419 smart00534 MUTSac ATPase domai 98.9 4.2E-10 9E-15 84.7 2.5 76 46-122 41-123 (185)
420 TIGR02680 conserved hypothetic 98.9 1.6E-09 3.6E-14 102.1 6.9 61 60-120 1241-1315(1353)
421 KOG0060|consensus 98.9 1.8E-09 3.9E-14 93.7 6.4 108 10-121 507-627 (659)
422 PRK02224 chromosome segregatio 98.9 2.1E-09 4.5E-14 97.1 6.7 72 63-136 778-867 (880)
423 cd03243 ABC_MutS_homologs The 98.8 1.3E-08 2.9E-13 77.3 6.0 70 51-121 76-151 (202)
424 PRK14079 recF recombination pr 98.8 1.8E-08 4E-13 83.0 6.7 54 65-118 262-325 (349)
425 KOG2355|consensus 98.7 1.3E-08 2.8E-13 79.6 4.2 77 46-124 129-211 (291)
426 cd03282 ABC_MSH4_euk MutS4 hom 98.7 2.2E-08 4.7E-13 77.0 5.5 77 47-124 72-154 (204)
427 COG0178 UvrA Excinuclease ATPa 98.7 1.6E-07 3.5E-12 84.4 10.0 81 51-133 465-553 (935)
428 PF02463 SMC_N: RecF/RecN/SMC 98.7 1.3E-07 2.9E-12 72.1 8.3 77 45-127 121-205 (220)
429 cd03283 ABC_MutS-like MutS-lik 98.6 6.6E-08 1.4E-12 73.9 6.2 80 11-125 67-152 (199)
430 PF13558 SbcCD_C: Putative exo 98.6 7.4E-08 1.6E-12 65.1 4.7 50 61-110 27-89 (90)
431 KOG0064|consensus 98.6 3E-08 6.6E-13 85.9 3.4 78 44-121 581-669 (728)
432 PRK00409 recombination and DNA 98.6 8.4E-08 1.8E-12 86.5 6.2 72 50-122 374-451 (782)
433 PF13304 AAA_21: AAA domain; P 98.6 2.7E-07 5.8E-12 68.2 7.6 60 63-122 233-300 (303)
434 KOG0063|consensus 98.5 9E-08 1.9E-12 81.3 4.4 89 44-135 434-530 (592)
435 PTZ00132 GTP-binding nuclear p 98.5 1.4E-07 3E-12 71.8 4.2 48 65-112 149-203 (215)
436 COG4615 PvdE ABC-type sideroph 98.5 6.1E-07 1.3E-11 75.8 7.8 85 43-127 420-515 (546)
437 COG2401 ABC-type ATPase fused 98.5 4.1E-07 9E-12 77.2 6.5 90 45-135 484-582 (593)
438 TIGR01069 mutS2 MutS2 family p 98.3 4.3E-07 9.4E-12 81.9 4.3 73 49-122 368-446 (771)
439 KOG0063|consensus 98.3 5.9E-07 1.3E-11 76.5 4.7 87 46-135 193-286 (592)
440 COG0419 SbcC ATPase involved i 98.3 1.8E-06 3.9E-11 78.9 7.9 61 62-122 811-884 (908)
441 cd03281 ABC_MSH5_euk MutS5 hom 98.2 2.8E-06 6E-11 65.6 6.1 59 69-127 93-160 (213)
442 cd01124 KaiC KaiC is a circadi 98.2 5.1E-06 1.1E-10 61.3 7.0 66 58-123 63-142 (187)
443 cd03284 ABC_MutS1 MutS1 homolo 98.1 5.4E-06 1.2E-10 64.1 4.5 56 65-120 84-152 (216)
444 PRK13695 putative NTPase; Prov 97.8 4.7E-05 1E-09 56.3 6.0 61 61-121 73-136 (174)
445 TIGR03185 DNA_S_dndD DNA sulfu 97.7 0.00011 2.3E-09 65.2 6.8 57 63-120 548-613 (650)
446 PF13175 AAA_15: AAA ATPase do 97.4 0.00042 9.1E-09 56.7 6.4 62 62-123 337-414 (415)
447 cd01125 repA Hexameric Replica 97.4 0.00019 4E-09 55.8 3.8 79 43-124 56-162 (239)
448 TIGR02858 spore_III_AA stage I 97.3 0.00072 1.6E-08 54.2 5.9 66 67-136 177-256 (270)
449 PRK13830 conjugal transfer pro 97.2 0.00062 1.3E-08 62.0 5.2 44 82-125 650-699 (818)
450 cd01128 rho_factor Transcripti 97.1 0.00047 1E-08 54.7 3.3 68 63-135 126-206 (249)
451 cd03286 ABC_MSH6_euk MutS6 hom 97.1 0.0016 3.4E-08 50.7 6.2 55 71-128 96-157 (218)
452 PF13166 AAA_13: AAA domain 96.8 0.0031 6.7E-08 56.0 6.7 79 45-126 462-573 (712)
453 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.004 8.7E-08 48.5 6.4 52 71-122 97-155 (222)
454 PRK08533 flagellar accessory p 96.8 0.0038 8.3E-08 48.6 6.1 54 66-119 95-161 (230)
455 PRK13891 conjugal transfer pro 96.6 0.0033 7.2E-08 57.6 5.3 50 77-126 680-735 (852)
456 PRK06067 flagellar accessory p 96.5 0.013 2.9E-07 45.1 7.1 56 66-121 100-165 (234)
457 KOG0933|consensus 96.4 0.001 2.2E-08 61.3 0.8 53 58-110 1074-1130(1174)
458 cd01120 RecA-like_NTPases RecA 96.4 0.016 3.5E-07 40.7 6.6 63 64-126 65-142 (165)
459 COG1196 Smc Chromosome segrega 96.2 0.0093 2E-07 56.3 6.0 67 63-129 1063-1137(1163)
460 COG4637 Predicted ATPase [Gene 95.9 0.017 3.8E-07 47.8 5.5 57 65-121 269-331 (373)
461 PRK05399 DNA mismatch repair p 95.9 0.024 5.2E-07 52.1 6.9 67 61-128 661-736 (854)
462 COG1195 RecF Recombinational D 95.9 0.019 4E-07 48.1 5.5 61 65-125 274-344 (363)
463 KOG0964|consensus 95.6 0.008 1.7E-07 55.6 2.6 64 64-127 1095-1166(1200)
464 cd01131 PilT Pilus retraction 95.2 0.054 1.2E-06 41.0 5.6 44 76-122 66-110 (198)
465 TIGR02655 circ_KaiC circadian 95.0 0.0014 3E-08 56.4 -4.2 76 51-136 100-190 (484)
466 KOG0962|consensus 94.8 0.031 6.8E-07 53.1 4.0 44 65-108 1182-1231(1294)
467 PRK13873 conjugal transfer ATP 94.7 0.045 9.7E-07 50.0 4.6 45 81-125 632-682 (811)
468 COG3910 Predicted ATPase [Gene 94.6 0.059 1.3E-06 42.0 4.4 61 60-121 123-188 (233)
469 KOG0996|consensus 94.2 0.038 8.3E-07 52.0 3.1 65 63-127 1192-1264(1293)
470 TIGR02903 spore_lon_C ATP-depe 94.1 0.11 2.4E-06 46.1 5.7 54 46-116 243-296 (615)
471 PF13514 AAA_27: AAA domain 93.7 0.13 2.8E-06 48.5 5.6 73 63-135 1022-1109(1111)
472 PRK13898 type IV secretion sys 93.6 0.12 2.7E-06 47.0 5.1 45 80-124 638-688 (800)
473 PRK08699 DNA polymerase III su 93.6 0.075 1.6E-06 43.7 3.4 44 88-131 116-163 (325)
474 TIGR01420 pilT_fam pilus retra 92.2 0.37 8.1E-06 39.6 5.7 46 76-124 187-233 (343)
475 COG4694 Uncharacterized protei 92.2 0.34 7.4E-06 43.0 5.6 60 61-120 523-596 (758)
476 smart00382 AAA ATPases associa 92.2 1.3 2.8E-05 29.2 7.5 58 63-120 57-125 (148)
477 PRK04863 mukB cell division pr 91.9 0.1 2.2E-06 50.8 2.2 61 64-125 1363-1440(1486)
478 PRK00454 engB GTP-binding prot 91.0 0.73 1.6E-05 33.7 5.7 61 46-110 126-190 (196)
479 PRK06793 fliI flagellum-specif 89.8 0.28 6.2E-06 42.0 2.9 38 63-100 218-262 (432)
480 TIGR00152 dephospho-CoA kinase 89.4 0.099 2.2E-06 38.9 -0.2 66 69-136 60-131 (188)
481 COG0497 RecN ATPase involved i 89.2 1.8 3.9E-05 38.3 7.4 62 65-129 430-499 (557)
482 KOG0018|consensus 88.9 0.3 6.5E-06 45.9 2.5 49 62-110 1047-1099(1141)
483 KOG0250|consensus 88.8 0.21 4.5E-06 46.9 1.4 67 63-132 986-1063(1074)
484 COG4913 Uncharacterized protei 86.1 2.1 4.5E-05 39.4 5.9 47 65-111 989-1048(1104)
485 cd02023 UMPK Uridine monophosp 86.1 0.43 9.4E-06 35.6 1.5 53 46-101 63-115 (198)
486 COG3593 Predicted ATP-dependen 85.9 1.6 3.4E-05 38.9 5.1 52 84-135 301-356 (581)
487 TIGR01070 mutS1 DNA mismatch r 85.2 0.63 1.4E-05 43.0 2.4 57 65-121 650-715 (840)
488 TIGR02788 VirB11 P-type DNA tr 84.6 2.2 4.7E-05 34.5 5.1 45 74-122 208-254 (308)
489 PTZ00454 26S protease regulato 83.0 5.1 0.00011 33.9 6.8 53 76-128 230-301 (398)
490 PF00488 MutS_V: MutS domain V 74.8 15 0.00033 28.6 6.8 58 64-121 100-166 (235)
491 cd00561 CobA_CobO_BtuR ATP:cor 74.6 7.8 0.00017 28.7 4.8 46 75-120 84-137 (159)
492 PRK06995 flhF flagellar biosyn 74.3 6.1 0.00013 34.4 4.8 98 16-118 297-400 (484)
493 cd00009 AAA The AAA+ (ATPases 73.9 6 0.00013 26.3 3.9 49 73-122 73-131 (151)
494 PRK07721 fliI flagellum-specif 72.6 8.1 0.00018 33.2 5.1 70 65-137 222-329 (438)
495 TIGR03581 EF_0839 conserved hy 72.6 17 0.00038 28.7 6.5 64 45-113 138-202 (236)
496 COG1106 Predicted ATPases [Gen 72.5 8 0.00017 32.6 4.9 62 61-122 246-314 (371)
497 PRK14088 dnaA chromosomal repl 72.3 5.3 0.00011 34.1 3.9 43 83-125 193-242 (440)
498 cd01876 YihA_EngB The YihA (En 72.1 13 0.00028 25.5 5.3 62 45-110 100-167 (170)
499 COG3044 Predicted ATPase of th 70.5 21 0.00045 31.2 7.0 44 60-103 314-357 (554)
500 TIGR01242 26Sp45 26S proteasom 68.6 24 0.00053 28.9 7.0 51 79-129 210-279 (364)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=216.00 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=104.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+++||++||.+|+.++.- ... ..++.+ .++++.++|+.+||.++++.+|++|||||||||+|||||+.+|+++|+
T Consensus 85 ~fnLFPHlTvleNv~lap~-~v~-~~~k~e--A~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPV-KVK-KLSKAE--AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred cccccccchHHHHHHhhhH-HHc-CCCHHH--HHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 4689999999999998752 221 223334 678899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||.-..++++-+. |-|.++ +||+|.+|.. |||+++.+
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMiv---VTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMII---VTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEE---EechhHHHHHhhheEEEeeC
Confidence 99999999999998888544 669999 9999999999 99999753
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=209.63 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=103.2
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.++|++||++|+.++..... .++.+ ..+++.++|+.+||.+..+++|++|||||||||+|||||+.+|++|+|
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e--~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRG---KSKAE--ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred cCcccchhhHHhhheehhhccc---cchHh--HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 3568999999999999854322 11223 456899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||++||..++..+-+.+. +.||++ .|||+++|.. |||+++++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~Tvll---VTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLL---VTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE---EeCCHHHHHhhhCEEEEecC
Confidence 99999999999987776443 679999 9999999999 99999974
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.3e-31 Score=211.18 Aligned_cols=118 Identities=24% Similarity=0.325 Sum_probs=105.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.++++.+.||++|++|+..+.. .++.+ .++++.++|+.+||.++.+++|.+|||||||||+|||||+.+|+|||+
T Consensus 91 hFnLLssrTV~~NvA~PLeiag---~~k~e--i~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~ 165 (339)
T COG1135 91 HFNLLSSRTVFENVAFPLELAG---VPKAE--IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165 (339)
T ss_pred cccccccchHHhhhhhhHhhcC---CCHHH--HHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence 4678889999999999865432 23344 788999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||+|||.+.+.+++.+. |.||.+ .||.|+...+ |||.+++
T Consensus 166 DEaTSALDP~TT~sIL~LL~~In~~lglTIvl---ITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 166 DEATSALDPETTQSILELLKDINRELGLTIVL---ITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred cCccccCChHHHHHHHHHHHHHHHHcCCEEEE---EechHHHHHHHhhhheEee
Confidence 99999999999999998665 779999 9999999999 9999986
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=203.74 Aligned_cols=118 Identities=21% Similarity=0.368 Sum_probs=101.9
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
+..+||++||.+|+.+...+.. +.+.+ .+++++++|+.+||+ ++++++|++|||||||||.+||||+.+|++|
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~---w~k~~--i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLG---WDKER--IKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcC---CCHHH--HHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 3568999999999998755432 23334 778999999999997 4889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHh------hccceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYER------KVDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~------~~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|+||||++|||.++.++=+. ..+.||.+ +||||++|.. ||+|++.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf---VTHDidEA~kLadri~vm~ 210 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVF---VTHDIDEALKLADRIAVMD 210 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEE---EecCHHHHHhhhceEEEec
Confidence 99999999999999866553 23789999 9999999999 9999875
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=5.9e-29 Score=193.79 Aligned_cols=119 Identities=26% Similarity=0.298 Sum_probs=101.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-ccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-TMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
..++++.+||.||+.++..+... .... ..+++.++++.+|+.+..+ ++|.+|||||||||+|||||+.+|++||
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~---~~~~--~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil 165 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGK---SAGR--RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIIL 165 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCC---ChhH--HHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE
Confidence 56789999999999986432211 1112 4667889999999997776 8899999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
+||||++||..+.+.+++.+. |.||++ .|||...|.. ||+|.|.|
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~---VTHd~~lA~~~dr~i~l~d 217 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIM---VTHDPELAKYADRVIELKD 217 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHhCCEEEEEeC
Confidence 999999999999999988544 669999 8999999999 99999876
No 6
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.9e-29 Score=191.70 Aligned_cols=115 Identities=23% Similarity=0.233 Sum_probs=93.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
.|+.|| +|+++|+.++..++... . .+ .++.++..|+...|++ .+++.+..||||||||+||||||+.+|+
T Consensus 96 kPnPFp-~SIydNVayG~r~~g~~--~-~~--ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe 169 (253)
T COG1117 96 KPNPFP-MSIYDNVAYGLRLHGIK--D-KE--LDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE 169 (253)
T ss_pred CCCCCC-chHHHHHHHhHHhhccc--h-HH--HHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence 456777 99999999986554221 1 22 6778899999998864 4567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEE
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCL 134 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~ 134 (137)
+||||||||+|||.+..+|-+.+. +-||.+ +||||+||.| |...+
T Consensus 170 VlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIvi---VTHnmqQAaRvSD~taF 220 (253)
T COG1117 170 VLLMDEPTSALDPISTLKIEELITELKKKYTIVI---VTHNMQQAARVSDYTAF 220 (253)
T ss_pred EEEecCcccccCchhHHHHHHHHHHHHhccEEEE---EeCCHHHHHHHhHhhhh
Confidence 999999999999999987766443 558888 9999999999 65443
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=4.6e-28 Score=189.73 Aligned_cols=120 Identities=22% Similarity=0.266 Sum_probs=100.1
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
+.++|.++||+||+.|...- ...+++.. .++.+..-|+.+||... .+++|++|||||+||+++|||++.+|++|+
T Consensus 93 ~gALFssltV~eNVafplre--~~~lp~~~--i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 93 QGALFSSLTVFENVAFPLRE--HTKLPESL--IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred ccccccccchhHhhheehHh--hccCCHHH--HHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 46789999999999987421 11223333 66778888999999887 899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+||||+||||.+...|-+... |.|+++ .|||+..+.. |||++|.|
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~---VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIM---VTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE---EECChHHHHhhhceEEEEeC
Confidence 999999999999876655322 779999 8999998888 99999875
No 8
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=183.71 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+++|..+||.+|+........... ...+.+.+++++|+.|++.+..+++..+||||||+|++|||||+.+|+.++||
T Consensus 88 ~SIFr~LtV~dNi~~vlE~~~~d~---~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 88 ASIFRKLTVEDNIMAVLEIREKDL---KKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred chHhhcCcHHHHHHHHHhhhhcch---hHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 357889999999987654432111 11113446889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|+||.+...|-+. -+|.+|++ |+||+++++. ||+|+|++
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLI---TDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLI---TDHNVRETLDICDRAYIISD 214 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEE---ccccHHHHHhhhheEEEEec
Confidence 99999999998877663 33889999 9999999999 99999975
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-27 Score=186.75 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=97.3
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP 96 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg 96 (137)
.+||+|.+.++...+.. .+.+-.+...++++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||||+|
T Consensus 91 P~tV~d~V~~g~~~~~g-~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~g 169 (254)
T COG1121 91 PITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169 (254)
T ss_pred CcCHHHHHHccCccccc-ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCccc
Confidence 38999999988533211 11111111457899999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 97 LHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 97 LD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+|+.++..|++.+. |.||++ .+||+..+.. |+|+.|.
T Consensus 170 vD~~~~~~i~~lL~~l~~eg~tIl~---vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 170 VDVAGQKEIYDLLKELRQEGKTVLM---VTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEE---EeCCcHHhHhhCCEEEEEc
Confidence 99999999998543 779999 8999999999 9998874
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.1e-27 Score=189.37 Aligned_cols=120 Identities=26% Similarity=0.404 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|++||+.+...++... ... ..++++++++.+||.+..++++++||+|||||+.||+||+++|+++|||
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~---~~~--~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLS---KEE--AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCC---hhH--HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 44799999999999876554221 112 4568999999999998778899999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----c-ceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----D-TKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~-~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+||||.++..+++.++ + .||+++||...++.+. -|+|++|.+
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~-~d~v~il~~ 212 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILND 212 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh-CCEEEEEeC
Confidence 9999999999999999655 4 6999966666666655 489998864
No 11
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.3e-27 Score=193.51 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=101.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.++|+.||.+|..|+..+.. .++.+ .++++.++|+.+||..+.+++|.+|||||||||.+||||+.+|+|||+|
T Consensus 115 FaLlPhrtVl~Nv~fGLev~G---v~~~e--r~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQG---VPKAE--REERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred hccccchhHhhhhhcceeecC---CCHHH--HHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence 568999999999999865432 22234 6778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||--+.+.-+.+. .+||.+ .|||+.+|+| ||+.++.|
T Consensus 190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF---itHDLdEAlriG~rIaimkd 240 (386)
T COG4175 190 EAFSALDPLIRTEMQDELLELQAKLKKTIVF---ITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHhCCeEEE---EecCHHHHHhccceEEEecC
Confidence 9999999988875544322 669999 8999999999 88888754
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-27 Score=194.42 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=101.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.++||+|||++|+.|+..... .++.+ .++++++.++.++|++.++++|.+|||||||||+|||||+++|+++|||
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~---~~k~e--i~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRG---VPKAE--IDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCC---CchHH--HHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 568999999999999854321 12234 7889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|+||..-+..+...+. +.|++| .|||-.+|+- ||+.++.
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IY---VTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIY---VTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEE---EcCCHHHHHhhCCEEEEEe
Confidence 9999999999886665433 679999 8999999988 9998875
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=4e-27 Score=179.45 Aligned_cols=121 Identities=24% Similarity=0.299 Sum_probs=99.0
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+..+++++||+||++++..... .+..+ ..+++.+.|+.+||.+.++..|.+||||||||++||||++.+|++||.
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G---~~~~~--i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA 161 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIG---KPPRE--IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA 161 (223)
T ss_pred eccccccchHhhhhhhhhhccC---CCHHH--HHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence 4568899999999998854321 11223 678999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||.+|||.....+++.+. |.||++.||..+=|.+. +-|++.|++
T Consensus 162 DEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~-~~rvl~l~~ 212 (223)
T COG2884 162 DEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM-RHRVLALED 212 (223)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc-cCcEEEEeC
Confidence 99999999999998888654 88999955554444333 367777653
No 14
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=190.63 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=102.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+..+|+.|||.+|+.|+...+. ...+..+ .+.++.++|+.+.|++..+++|.+|||||||||++||||+..|++|||
T Consensus 85 ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~--~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 85 HYALFPHMTVADNIAFGLKVRK-ERPSEAE--IRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred chhhcccchHHhhhhhcccccc-cCCChhh--HHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 3468999999999999964431 1111223 677899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+++||..-+..+-.-++ |.+..+ +|||..+|.+ |||.++++
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf---VTHD~eea~~ladrvvvl~~ 213 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVF---VTHDQEEALELADRVVVLNQ 213 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEE---EeCCHHHHHhhcceEEEecC
Confidence 99999999999987766444 556677 7999999999 99999975
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.2e-27 Score=195.06 Aligned_cols=120 Identities=20% Similarity=0.309 Sum_probs=102.2
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
..++||+|||++|+.|+.... ....+.+ +.+++.++|+.++++++.+++|++|||||||||+|||||+.+|++|||
T Consensus 85 ~YALFPHltV~~NVafGLk~~--~~~~~~~--i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVR--KKLKKAE--IKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhc--CCCCHHH--HHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 357999999999999985421 1111122 667999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|+||..-+.++-..++ |.|.+| .|||=.+|+. ||+.++++
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~---VTHDqeEAl~msDrI~Vm~~ 212 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVY---VTHDQEEALAMSDRIAVMND 212 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEE---EECCHHHHhhhccceEEccC
Confidence 99999999999987665433 778888 8999999998 99998864
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=191.58 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=99.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+++||++|+.++..... ....+ ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~---~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRG---MPKAE--IEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcC---CCHHH--HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3568899999999998743211 11122 456788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||++||+..+..+.+.+. +.|+++ .|||..+|.. |+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY---VTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 99999999999998877443 679999 7888888876 99998864
No 17
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=1e-26 Score=191.96 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=99.9
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+.+||++|+.++..... ....+ ..+++.++++.+||++..++++.+|||||||||+|||||+.+|++|||
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~---~~~~~--~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQK---MPKAD--IAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3468999999999998743211 11112 456789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+..+.++.+.+. |.|++| .|||+.+|.. ||++++.+
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~---vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILC---VTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998888443 579999 8888888876 99999864
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=1.4e-26 Score=190.11 Aligned_cols=118 Identities=26% Similarity=0.333 Sum_probs=98.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+++|+.++.... .....+ ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 91 ~~l~~~~tv~eni~~~~~~~---~~~~~~--~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD 165 (343)
T TIGR02314 91 FNLLSSRTVFGNVALPLELD---NTPKDE--IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred ccccccCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 46788899999998764321 111122 4567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||++||+.++..+++.+. +.||++ .|||+..+.. |++++|.+
T Consensus 166 EPts~LD~~t~~~i~~lL~~l~~~~g~tiil---iTH~~~~v~~~~d~v~vl~~ 216 (343)
T TIGR02314 166 EATSALDPATTQSILELLKEINRRLGLTILL---ITHEMDVVKRICDCVAVISN 216 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 569999 7888888876 99998864
No 19
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=1.5e-26 Score=191.20 Aligned_cols=119 Identities=22% Similarity=0.333 Sum_probs=100.5
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+++||++|+.++.... .+...+ ..+++.++++.+||+.+.++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~--~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELL---GWPEQE--RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456889999999998864321 111122 456788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+.+.+. +.||++ .|||+.++.. |+++++.+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~---vTHd~~ea~~~~drI~vl~~ 205 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVF---ITHDLDEAIRIGDRIVIMKA 205 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 99999999999998888543 679999 8899998877 99998864
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=189.64 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=100.5
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+++||++|+.++...+. ....+ ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~---~~~~~--~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLG---VPKEE--RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3468999999999998743211 11122 456889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+..+.++.+.+. +.|+++ .|||..++.. |+++++.+
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLY---VTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 99999999999998887543 679999 8899998877 99999864
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=2.4e-26 Score=189.08 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=100.4
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+++||++|+.++.... ...+.+ ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~---~~~~~~--~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNR---GMGRAE--VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 356899999999999874321 111122 456889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||++||+..+..+.+.+. +.|+++ .|||..+|.. |++++|.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~---vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIM---VTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 99999999999998887543 679999 7888888877 99999864
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.3e-26 Score=183.77 Aligned_cols=124 Identities=25% Similarity=0.268 Sum_probs=103.5
Q ss_pred cCC-CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 10 IWD-SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 10 ~~~-~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
|+. ...+.+||+|.+.+|+..+.. .+....+++++.+.+.|+.+|+.+++++++.+||||||||+.|||||+++|++|
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~-~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLG-LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccc-cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 444 345679999999998653321 111112224567899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||++||...+.++++.++ |.||++ +.||+.+|.+ |+++++.+
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~---vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVM---VLHDLNLAARYADHLILLKD 214 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999998544 678999 9999999999 99999864
No 23
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=188.87 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=98.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+++||.+|+.++..... ....+ ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~---~~~~~--~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL 173 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDK---LPKAE--IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3568999999999998743211 11122 456788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||++||+..+..+.+.+ .+.|+++ .|||..+|.. |++++|.+
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVM---VTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEeC
Confidence 9999999999998776422 2679999 7888888776 99999864
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-26 Score=180.68 Aligned_cols=122 Identities=19% Similarity=0.285 Sum_probs=103.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhH--Hh---hhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVL--AA---MFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNP 85 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~--~~---~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P 85 (137)
++++.+.++|++|+..+..-+.. .. ++..+ .+..+-+.|+++|+.+++..+.++|||||||||+|||||+++|
T Consensus 89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~--dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~p 166 (258)
T COG3638 89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE--DKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQP 166 (258)
T ss_pred cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH--HHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCC
Confidence 57889999999999987532111 11 11122 4567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++||.|||+|+|||.+.+++++.++ |.||++ +.|++..|+. +|+|-|.+
T Consensus 167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~---nLH~vdlA~~Y~~Riigl~~ 223 (258)
T COG3638 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIV---NLHQVDLAKKYADRIIGLKA 223 (258)
T ss_pred CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE---EechHHHHHHHHhhheEecC
Confidence 9999999999999999999999766 679999 9999999999 99887753
No 25
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=6.2e-26 Score=173.40 Aligned_cols=118 Identities=20% Similarity=0.308 Sum_probs=94.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (216)
T TIGR00960 89 HRLLSDRTVYDNVAFPLRII---GVPPRD--ANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD 163 (216)
T ss_pred ccccccccHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45677899999998763211 101111 3457888999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+..+.. |+++++.+
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFEEFNRRGTTVLV---ATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 9999999999998888544 678999 5566665544 89998864
No 26
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.3e-26 Score=180.34 Aligned_cols=115 Identities=25% Similarity=0.282 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+..-||.+.+.|+.... ..+.++ .++++.++++.+|+.+..++.|.+|||||||||+||.+|+.+|++|||||||
T Consensus 92 ~~~~tV~~evafg~~n~---g~~~~e--~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 92 LFGPTVEDEVAFGLENL---GLPREE--IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred cccCcHHHHHhhchhhc---CCCHHH--HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 44689999999985322 112233 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+..+..+++.+. +.||++ .|||+..+.. |+|+++++
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~---~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIII---VTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEE---EeCcHHHHHhhCCEEEEEEC
Confidence 9999999999998655 468999 8889988888 99999875
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=6.2e-26 Score=188.13 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=99.7
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+|+.+||++|+.++.... ..+..+ ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQ---KTPAAE--ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456899999999999874321 111112 456788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+..+..+.+.++ +.|++| .|||..+|.. |+++++.+
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~---vTHd~~ea~~laDri~vl~~ 220 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVF---VTHDQEEALTMSDRIVVMRD 220 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998887543 679999 8888888876 99998864
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-26 Score=175.74 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=98.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
..+|..||++||+.++..++. +.+.+ .+++++++.+.+++.++.|++++++|.||||||.|||||+++|++++||
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~---l~~~~--~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 84 RGLYARLTARENLKYFARLNG---LSRKE--IKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhh---hhhhH--HHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 457889999999998765442 23344 6789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||..++..+.+.+. |..|+| -+|.|+++.. |||++|.
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viF---SSH~m~EvealCDrvivlh 207 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIF---SSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEE---ecccHHHHHHhhheEEEEe
Confidence 9999999999987776433 678999 4566666665 9999874
No 29
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.93 E-value=1.1e-25 Score=181.71 Aligned_cols=118 Identities=25% Similarity=0.443 Sum_probs=94.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+++|+.+....+. ....+ ..+++.++++.+++.+..++++++||||||||++||+||+++|++||||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 89 DNLDPDFTVRENLLVFGRYFG---LSAAA--ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred CcCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 356778999999986532221 11112 3457788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+|++.++.. ||+++|.+
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l~~~g~till---~sH~l~e~~~~~d~i~il~~ 213 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVIEE 213 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888544 679999 5666666554 88888753
No 30
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1e-25 Score=185.47 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+|+.+|+++|+.++...... ......+ ..+++.++++.+||.+..++++.+||||||||++|||||+.+|++|||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAA--IKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4688999999999987432100 0111112 456888999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+..+..+.+.+. +.|+++ .|||+.+|.. |++++|.+
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~---vTHd~~ea~~~~Dri~vl~~ 212 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVF---VTHDQEEAMEVADRVVVMSQ 212 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998877543 579999 8889998887 99999864
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=1.4e-25 Score=180.29 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=94.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+....+. ..... ..+++.++++.+|+.+..++++++||||||||++||+||+++|++||||
T Consensus 75 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 75 ASVDEDLTGRENLEMMGRLYG---LPKDE--AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 356788999999987532211 11111 3457889999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+|++.++.. |++++|.+
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~---~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILL---TTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 679999 5666666654 88888753
No 32
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.7e-26 Score=172.48 Aligned_cols=119 Identities=23% Similarity=0.282 Sum_probs=100.7
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+++++.||+.||+.-.. .+... .++.+ ..++++.+|..+|+.+..+.+|..||||||||++|||||+.+|+++++
T Consensus 101 ~FNLWsHmtvLeNViEaP-vhVLg-~~k~e--a~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLF 176 (256)
T COG4598 101 HFNLWSHMTVLENVIEAP-VHVLG-VSKAE--AIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLF 176 (256)
T ss_pred hcchhHHHHHHHHHHhcc-hHhhc-CCHHH--HHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEee
Confidence 367889999999987654 22221 12233 567899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||+|||.-..+++.-++ |.|..+ .||.|.+|.. .+|++|.
T Consensus 177 DEPTSALDPElVgEVLkv~~~LAeEgrTMv~---VTHEM~FAR~Vss~v~fLh 226 (256)
T COG4598 177 DEPTSALDPELVGEVLKVMQDLAEEGRTMVV---VTHEMGFARDVSSHVIFLH 226 (256)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhCCeEEE---EeeehhHHHhhhhheEEee
Confidence 99999999998887776443 779998 8999999999 9999884
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=185.00 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=97.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+|+++|+.++..... ....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~---~~~~~--~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAG---AKKEE--INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcC---CCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 457889999999987642211 11112 4467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. +.|+++ .|||+.++.. |++++|.+
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~---vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIY---VTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998876432 679999 7788887766 99998864
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=174.18 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=103.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhh--HH-----hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc
Q psy317 11 WDSMDPKKTPLTRMQISNGMMV--LA-----AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN 83 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~--~~-----~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~ 83 (137)
...+|++|||.||+..+...+. .. .+.+.+++..+++.++|+.+||.+.++++.++||+|||||++|||||+.
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 3568999999999998743210 00 0111233356789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+|++|+||||++||.+.+...+.+.++ |.||++ ..|||..+++ |||+++.
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till---IEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL---IEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE---EEeccHHHhhhccEEEecc
Confidence 999999999999999999999888654 468998 9999999999 9999974
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=3e-25 Score=169.61 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=95.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ..... ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 165 (218)
T cd03255 91 FNLLPDLTALENVELPLLLAG---VPKKE--RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD 165 (218)
T ss_pred cccCCCCcHHHHHHHHHhhcC---CCHHH--HHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 356778999999987642211 01111 3457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||+++||..+.+. ..|++++|.+
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~v~~l~~ 215 (218)
T cd03255 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE--YADRIIELRD 215 (218)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh--hhcEEEEeeC
Confidence 9999999999998887433 579999777766653 4599998864
No 36
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.5e-25 Score=169.71 Aligned_cols=117 Identities=20% Similarity=0.326 Sum_probs=92.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRG---VPKAE--IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred hhccCCcHHHHHHhHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 46678999999987532110 01111 34567889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIY---VTHDQEEALALADRIAVMNE 206 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EecCHHHHHHhcCEEEEEEC
Confidence 999999999998888543 679999 5555555444 88888753
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.3e-25 Score=171.50 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=94.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 86 ~~~~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 86 GALFDSLTVFENVAFPLREHT--RLSEEE--IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred cccCCCCcHHHHHHHHHhhcc--CCCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 346778999999987532110 011112 3457788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIM---VTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhcCEEEEEEC
Confidence 9999999999998887543 679999 6667776655 89988853
No 38
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=4.4e-25 Score=169.00 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=92.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++..... ....+ ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||
T Consensus 93 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 93 HLLPDFTALENVAMPLLIGK---KSVKE--AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 46778999999987532110 11111 34567889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|+++||..+.+.. . |++++|.+
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~-d~v~~l~~ 216 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-L-DRVLEMKD 216 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-c-CEEEEEeC
Confidence 999999999998888553 6799996655544433 1 99998863
No 39
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=4.2e-25 Score=179.65 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=97.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 51 ~~l~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD 125 (325)
T TIGR01187 51 YALFPHMTVEENVAFGLKMR---KVPRAE--IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD 125 (325)
T ss_pred ccccCCCcHHHHHHHHHhhc---CCCHHH--HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 35788899999999864221 111112 3457888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. +.||++ .|||+.++.. |++++|.+
T Consensus 126 EP~s~LD~~~~~~l~~~l~~l~~~~g~tiii---vTHd~~e~~~~~d~i~vl~~ 176 (325)
T TIGR01187 126 EPLSALDKKLRDQMQLELKTIQEQLGITFVF---VTHDQEEAMTMSDRIAIMRK 176 (325)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887443 679999 7778887766 99998864
No 40
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.9e-25 Score=167.44 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=94.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+..... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLK---GIPSKE--VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CcccccCCHHHHHHHHHHHh---CCCHHH--HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44677889999998753221 111112 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+.++.. |+++++.+
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVIL---STHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888655 568999 5666666544 88888754
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=5.5e-25 Score=167.76 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=94.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD 162 (214)
T TIGR02673 88 FRLLPDRTVYENVALPLEVR---GKKERE--IQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD 162 (214)
T ss_pred hhhccCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 35677899999998753211 001111 3457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |+++++.+
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNKRGTTVIV---ATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEecC
Confidence 9999999999998888543 679999 5566666654 99998864
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=5e-25 Score=168.40 Aligned_cols=117 Identities=21% Similarity=0.355 Sum_probs=94.0
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.+..... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 88 ~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 88 GLYDRLTARENLEYFAGLY---GLKGDE--LTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred ccCcCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5677799999998653221 111112 34678889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRALGKCILF---STHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 999999999998887543 679999 5666665554 88888864
No 43
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6e-25 Score=183.65 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=97.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+++|+.+|+.++.... .+...+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~---~~~~~~--~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELA---GINAEE--RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 45788899999998764221 111112 3457888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+.+.+ .+.||++ .+||+.++.. |++++|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIi---vTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVF---ISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999999888754 2679999 7788888766 99998864
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-25 Score=180.14 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=95.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+++|++||||
T Consensus 91 ~~l~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD 165 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELA---GTPKAE--IKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred CccCCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 45777899999998764221 111112 3457889999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+..+.. |++++|.+
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiil---vtH~~~~i~~~~d~v~~l~~ 216 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRELGLTIVL---ITHEMDVVKRICDRVAVIDA 216 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 679999 6667776655 89988853
No 45
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-25 Score=174.06 Aligned_cols=117 Identities=22% Similarity=0.366 Sum_probs=98.8
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
|..++.|..||.+.+.-+...+ +. .+ ..+++.++|+.|||. .+++++|.+|||||+||++|||||+.+|++|
T Consensus 91 p~~SLnP~~tv~~~l~Epl~~~---~~--~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklL 163 (252)
T COG1124 91 PYSSLNPRRTVGRILSEPLRPH---GL--SK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL 163 (252)
T ss_pred CccccCcchhHHHHHhhhhccC---Cc--cH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEE
Confidence 6677889999999998764331 11 12 345688999999996 5789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||||+||+..+.++++.+. +.|.++ .+||++.+.. ||+.++.
T Consensus 164 IlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~---IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLF---ISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred EecCchhhhcHHHHHHHHHHHHHHHHhcCceEEE---EeCcHHHHHHHhhheeeee
Confidence 9999999999999999999654 679999 8999998887 8888764
No 46
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=6.2e-25 Score=167.35 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++..|+++|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLR---KVPKDE--IDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred hhccCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4667899999998753211 111112 34577889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIY---VTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence 999999999998888542 679999 5556655544 88888754
No 47
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=5.9e-25 Score=182.75 Aligned_cols=119 Identities=19% Similarity=0.301 Sum_probs=99.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+++++|+++|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+++|++|||
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~--~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAE--RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 356788899999999874221 111112 446788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+.+.+. +.||++ .+||+.++.+ ||++++.|
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~---iTHdl~e~~~l~DrI~vl~~ 240 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIF---VSHDLDEALKIGNRIAIMEG 240 (382)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998888543 679999 8889998877 99998864
No 48
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.2e-25 Score=168.97 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 96 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 170 (233)
T PRK11629 96 HHLLPDFTALENVAMPLLIGK---KKPAE--INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD 170 (233)
T ss_pred cccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 356778899999987532111 01112 3457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.+|+++||..+.+..+ +++++|.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~--~~~~~l~~ 220 (233)
T PRK11629 171 EPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM--SRQLEMRD 220 (233)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--CEEEEEEC
Confidence 9999999999998887432 67999955554444332 68877753
No 49
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=8.1e-25 Score=179.29 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=94.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+....+. ....+ ..+++.++++.+|+.+..++++++||||||||++||+||+++|++||||
T Consensus 123 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 123 DNLDLEFTVRENLLVFGRYFG---MSTRE--IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred ccCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 346688999999986432221 11111 3456778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+|++.++.. |+|++|.+
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~g~tili---sSH~l~e~~~~~d~i~il~~ 247 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVLEA 247 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999999988543 679999 5566666655 88888764
No 50
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=9.6e-25 Score=166.10 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
++.+|+.+|+.++.... ...... ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||||
T Consensus 88 ~~~~t~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 88 FFGPTVEEEVAFGLENL---GLPEEE--IEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred cCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 56789999998653211 001111 3456788999999998889999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.+|++ .+||+.++.. |+++++.+
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKAEGKTIII---VTHDLDLLLELADRVIVLED 209 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 9999999998888543 569999 5556665544 89988853
No 51
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.1e-25 Score=167.54 Aligned_cols=117 Identities=26% Similarity=0.384 Sum_probs=93.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++..... ....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 83 SVDDELTGWENLYIHARLYG---VPGAE--RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred cccccCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 46777999999987532211 11111 34578899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---~tH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILL---TTHYMEEAEQLCDRVAIIDH 207 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 999999999998888543 679999 5666666654 88888754
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.8e-25 Score=167.35 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=92.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQG---VPKAE--ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccccCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 46677999999987532211 11111 34578889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLL---VTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EecCHHHHHHhCCEEEEEE
Confidence 999999999998888542 679999 5556655444 8988886
No 53
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=2.7e-25 Score=168.89 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=96.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.++|..+||.+|+.++..... ... .. ..++++.++..+||.++.++.|.+|||||||||++||||+++-+||+||
T Consensus 80 nNLFaHLtV~qNigLGl~P~L--kL~-a~--~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGL--KLN-AE--QREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred cccchhhhhhhhhcccCCccc--ccC-HH--HHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 568999999999998853221 111 22 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||.-+.+.+... ++.|++|.|| ....|.+ ++++++.+
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH---~~~Da~~ia~~~~fl~~ 205 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTH---HPEDAARIADRVVFLDN 205 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeC---CHHHHHHhhhceEEEeC
Confidence 999999999998777643 3779999554 4555555 88887753
No 54
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=1e-24 Score=166.11 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=93.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ....+ ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++|||
T Consensus 87 ~~~~~~~t~~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 161 (214)
T cd03292 87 FRLLPDRNVYENVAFALEVTG---VPPRE--IRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161 (214)
T ss_pred chhccCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 357788999999987532111 01111 3457788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.++ +.||+++ +||...+.. |++++|.+
T Consensus 162 EPt~~LD~~~~~~~~~~l~~~~~~~~tiiiv---tH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVA---THAKELVDTTRHRVIALER 211 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEE---eCCHHHHHHhCCEEEEEeC
Confidence 9999999999998888543 6789994 455555443 88888753
No 55
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=8.1e-25 Score=178.66 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=96.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+.++..... ......+ ..+++.++++.+|+. ...++++++||||||||++|||||+.+|++||+|
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~-~~~~~~~--~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYH-PKLSRQE--VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhc-cCCCHHH--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 47888999999987532211 0111122 456788999999995 5679999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++.++++.+. +.||++ .|||+.++.. |+++++.+
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~~~til~---iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIF---IAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887543 679999 8899999886 99998853
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.1e-24 Score=175.28 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=94.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++++|+.+|+.+...... ....+ ..+++.++++.+|+.+..+++++.||||||||++||+||+++|++||||
T Consensus 84 ~~l~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 84 NPLYLDMYVREYLQFIAGIYG---MKGQL--LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred CCCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 457888999999987542211 11112 3457888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+|++.++.. ||+++|.+
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii---~sH~l~~~~~~~d~i~~l~~ 207 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIIL---STHIMQEVEAICDRVIIINK 207 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888554 569999 5555655544 88888753
No 57
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.92 E-value=1.1e-24 Score=175.34 Aligned_cols=118 Identities=25% Similarity=0.426 Sum_probs=93.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+..... ...... ..+++.++++.+|+.+..++++++||||||||++|||||+++|++||||
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 160 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYF---GMSTRE--IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD 160 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34677899999998643211 111111 3456778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 161 EPt~gLD~~~~~~l~~~l~~~~~~g~til~---~sH~~~~~~~~~d~i~~l~~ 210 (303)
T TIGR01288 161 EPTTGLDPHARHLIWERLRSLLARGKTILL---TTHFMEEAERLCDRLCVLES 210 (303)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888553 679999 5666666654 88888753
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=1.4e-24 Score=167.39 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=93.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+++|+.++..... ..... ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 84 ASIFRKLTVEENILAVLEIRG---LSKKE--REEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred ccccccCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 456778999999987532111 01111 3456788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLI---TDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887443 679999 5666665555 88888764
No 59
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-24 Score=172.00 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=94.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQ---GVPRAE--REERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred cccCCCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 35677899999998753211 001111 3456788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii---~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVF---ITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999998888432 679999 5666666554 88888753
No 60
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=1.7e-24 Score=177.91 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=95.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+|+++|+.++.... . ..+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~l~~~~tv~enl~~~~~~~--~---~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD 156 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRA--R---PSE--RRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156 (354)
T ss_pred CccCCCCcHHHHHHHHhhcc--C---hhH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45788899999998753211 1 112 3456889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .|||+.++.. |++++|.+
T Consensus 157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiii---vtH~~~~~~~~~d~i~~l~~ 207 (354)
T TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILY---VSHSLQEVLRLADRVVVLED 207 (354)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence 9999999999998887543 568999 6777777765 89988864
No 61
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=1.4e-24 Score=165.04 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=93.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... .. ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 81 PGFYPNLTARENLRLLARLL-------GI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred CccCccCcHHHHHHHHHHhc-------CC--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35677899999998753211 11 2346778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLI---SSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHHhcCEEEEEEC
Confidence 9999999999998887543 679999 6677776654 89988864
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.92 E-value=1.6e-24 Score=167.33 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=94.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhh-------hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAM-------FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~-------~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~ 84 (137)
+.+++.+|+.+|+.++......... .... ..+++.++++.+|+....++++.+||||||||++|||||+.+
T Consensus 84 ~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 84 PRLFPELTVLENVMVAAQARTGSGLLLARARREERE--ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccCCCHHHHHHHHHhhccccccccccccccHHH--HHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 4577889999999876422110000 0011 345688899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|++|||||||+|||+.++..+++.+. +.||++ .+||+..+.. |+++++.+
T Consensus 162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL---VEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999998888553 679999 5566666544 88888753
No 63
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=2e-24 Score=164.06 Aligned_cols=111 Identities=25% Similarity=0.286 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+..+|+.+|+.++... . .. ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 84 ~~~~tv~e~l~~~~~~----~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 84 LFTDSVREELLLGLKE----L---DA--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred hhhccHHHHHhhhhhh----c---Cc--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 3467999999764311 0 11 2356788999999999899999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+.+.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIV---ITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999998888543 669999 5566666554 89998864
No 64
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-24 Score=173.02 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=92.6
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
...|+++|+.++.... .....+ ..+++.++++.+|+. +..++++..||||||||++|||||+.+|++||||||
T Consensus 97 ~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEP 171 (287)
T PRK13637 97 FEETIEKDIAFGPINL---GLSEEE--IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171 (287)
T ss_pred ccccHHHHHHhHHHHC---CCCHHH--HHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 4579999998754221 111112 445788999999997 678999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.||++ .|||+.++.. |||++|++
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 172 TAGLDPKGRDEILNKIKELHKEYNMTIIL---VSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999888542 679999 7777777755 99999864
No 65
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=2.1e-24 Score=167.19 Aligned_cols=120 Identities=21% Similarity=0.319 Sum_probs=93.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ....... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 63 ~~l~~~~tv~e~l~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 63 YSLLPWLTVRENIALAVDRVL-PDLSKSE--RRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred cccCCCCCHHHHHHHHHHhcc-cCCCHHH--HHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 346777999999987521100 0111111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 140 EPt~gLD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~ 190 (230)
T TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLM---VTHDVDEALLLSDRVVMLTN 190 (230)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEeC
Confidence 9999999999998888543 569999 5666666554 89988863
No 66
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.1e-24 Score=163.98 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=92.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... .. .. ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~-~~----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRK-RN----RE--DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred CccCCCCCHHHHHHHHHhhC-CH----HH--HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 35677899999998653211 00 11 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.+++.+++.+. +.||++ .+||+.+... |++++|.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIF---VTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EecCHHHHHHhcCEEEEEEC
Confidence 9999999999998887543 678999 5566666544 88888753
No 67
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=2.2e-24 Score=165.65 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=92.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 88 HHLLMDRTVYDNVAIPLIIA---GASGDD--IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred ccccccccHHHHHHhHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34567899999998753211 101111 3446778999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 212 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLM---ATHDIGLISRRSYRMLTLSD 212 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999988877544 579999 5555555544 88888753
No 68
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.9e-24 Score=164.66 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=94.1
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+++.+|+.+|+.++...... . ... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll 152 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLK-L--TAE--DRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152 (211)
T ss_pred ccccCCCCcHHHHHhcccccccC-c--cHH--HHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34567789999999865321100 0 011 345678899999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAETKMTVLM---VTHQPEDAKRLAQRVVFLDN 204 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHhhhCEEEEEEC
Confidence 99999999999998888543 679999 5566665544 88888753
No 69
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.1e-24 Score=167.58 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=93.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+.+|+.++...... ....... ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAE--IRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3467789999999875322110 0000011 345678899999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii---~sH~~~~~~~~~d~i~~l~~ 212 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVF---VTHDQEEALEVADRVVVMNK 212 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998887543 679999 5556655544 88888753
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.4e-24 Score=163.98 Aligned_cols=118 Identities=17% Similarity=0.266 Sum_probs=92.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+...... ..... ..+++.++++.+|+....++++.+||||||||++||+||+.+|+++|||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKG---LKKEE--ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcC---CChHH--HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 356778999999986532211 11112 3457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|+++|| |...+.. |+++++.+
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH---~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTH---QMELVEELCDRVLLLNK 203 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CHHHHHHhhhEEEEEeC
Confidence 9999999999998887554 569999554 5554433 88887754
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=2.3e-24 Score=164.91 Aligned_cols=118 Identities=22% Similarity=0.372 Sum_probs=93.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 84 DALFDELTVREHLRFYARLKG---LPKSE--IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred CCccccCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 346678999999987532211 11111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIIL---TTHSMDEAEALCDRIAIMSD 207 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhcCEEEEEEC
Confidence 9999999999998888654 468999 5666666654 88888754
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.7e-24 Score=165.99 Aligned_cols=118 Identities=22% Similarity=0.317 Sum_probs=92.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ..... ..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 165 (233)
T cd03258 91 FNLLSSRTVFENVALPLEIAG---VPKAE--IEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD 165 (233)
T ss_pred cccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 456778999999987532111 11111 3456788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||+++ +||...+.. |++++|.+
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~---sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 166 EATSALDPETTQSILALLRDINRELGLTIVLI---THEMEVVKRICDRVAVMEK 216 (233)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE---eCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887543 6799994 555555543 88888753
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.2e-24 Score=165.98 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=93.9
Q ss_pred CCCCCCCHHHHHHhhhhhh---hHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMM---VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~---~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+++.+|+.+|+.++.... .............+++.++++.+|+....++++.+||||||||++|||||+.+|++||
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 167 (241)
T cd03256 88 NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167 (241)
T ss_pred cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4677899999998653110 0000000011134567889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. |.+|++ .+||+..+.. |++++|.+
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 168 ADEPVASLDPASSRQVMDLLKRINREEGITVIV---SLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999998887543 679999 6667777664 99988864
No 74
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=3.6e-24 Score=162.92 Aligned_cols=119 Identities=25% Similarity=0.351 Sum_probs=93.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... .....+ ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus 85 ~~~~~~~t~~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 85 FNLFPHLTVLENITLAPIKVK--GMSKAE--AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred cccCCCCcHHHHHHhHHHHhc--CCCHHH--HHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 446778999999987532110 111111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |+++++.+
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~---~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVV---VTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 9999999999998887554 679999 5566666544 89988864
No 75
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=176.04 Aligned_cols=112 Identities=20% Similarity=0.342 Sum_probs=94.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+|+++|+.++.. . . ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 85 ~~l~~~~tv~enl~~~~~----~-----~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMA----K-----S--MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred cccCCCCcHHHHHHhhhh----h-----h--hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 457889999999986521 1 1 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. +.||++ .|||+.++.. |++++|.+
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~---vTHd~~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILY---VSHSLDEILRLADRVVVLEQ 204 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEE---EecCHHHHHHhCCEEEEEeC
Confidence 9999999999998887543 568999 7778877766 99988864
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=171.02 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++..|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 91 ~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 91 QVFSSTVWDDVAFGPVNM---GLDKDE--VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred hhccCcHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 345689999998753211 111112 345688899999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.||++ .+||+.++.. ||+++|++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tili---~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHNQGKTVIV---ATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999998888543 679999 7777877755 99998864
No 77
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=4.1e-24 Score=164.52 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=93.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ..... ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++||||
T Consensus 97 ~~l~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD 171 (228)
T PRK10584 97 FMLIPTLNALENVELPALLRG---ESSRQ--SRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD 171 (228)
T ss_pred cccCCCcCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 356777899999986532110 01112 3457889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|+++||..+.+.. .|+++++++
T Consensus 172 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~--~d~i~~l~~ 221 (228)
T PRK10584 172 EPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR--CDRRLRLVN 221 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence 9999999999998888552 6799996666554422 389988864
No 78
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.8e-24 Score=173.66 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
+...||++|+.++.... .....+ ..+++.++++.+||. +..++++.+||||||||++||+||+.+|++||||||
T Consensus 118 l~~~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEP 192 (305)
T PRK13651 118 LFEQTIEKDIIFGPVSM---GVSKEE--AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEP 192 (305)
T ss_pred cccccHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34579999998764211 111112 456788999999996 678999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.||++ .+||+..+.. ||++++.+
T Consensus 193 t~~LD~~~~~~l~~~l~~l~~~g~tiii---vtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 193 TAGLDPQGVKEILEIFDNLNKQGKTIIL---VTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeeCHHHHHHhCCEEEEEEC
Confidence 99999999998888543 679999 7788877665 99998864
No 79
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=167.30 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=101.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.++|++|+.+|+.|+..+.. ..+.. ..+++.+.+..+|+++..++++.+||||||||+.|||||+-+|++|+||
T Consensus 83 ~~LlPWl~~~dNvafgL~l~G---i~k~~--R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRG---IEKAQ--RREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred CccchhhHHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 568999999999999865432 12223 4568899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHh------hccceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYER------KVDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~------~~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+++||.-.++++-+. ..|+.+++ .|||+++|.- .|++++|
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~ll---iTH~ieEAlflatrLvvls 207 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLL---ITHDIEEALFLATRLVVLS 207 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEE---EeccHHHHHhhhheeEEec
Confidence 99999999999877653 44889999 8999999987 8998887
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=5.2e-24 Score=165.97 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=93.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ...... ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLD 169 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK--GEPKEE--ATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 356778999999987531110 101111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 170 EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~---~tH~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVI---VTHEMSFARDVADRAIFMDQ 219 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999998887543 679999 5666666544 88888753
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=4.2e-24 Score=165.66 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=93.3
Q ss_pred CCCCCCCHHHHHHhhhhhh---hHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMM---VLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~---~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+++.+|+.+|+.++.... .............+++.++++.+|+....++++.+||||||||++|||||+.+|++||
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 168 (243)
T TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL 168 (243)
T ss_pred cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4677899999998653110 0000000011134578889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVII---NLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence 999999999999998877443 578999 6666666654 89988864
No 82
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.8e-24 Score=170.96 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=91.9
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
.+|+.+|+.++.... .....+ ..+++.++++.+|++ ...++++++||||||||++|||||+.+|++|||||||+
T Consensus 100 ~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~ 174 (287)
T PRK13641 100 ENTVLKDVEFGPKNF---GFSEDE--AKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174 (287)
T ss_pred cchHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 589999998653211 111112 345788999999997 67899999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+.+.+. |.||++ .+||+..+.. |++++|++
T Consensus 175 gLD~~~~~~l~~~l~~l~~~g~tvli---vsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 175 GLDPEGRKEMMQLFKDYQKAGHTVIL---VTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999998887544 679999 6777877765 99999864
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.4e-24 Score=168.07 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=93.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLA---GVEKMQ--RLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred CccCCCCcHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34677799999998753211 101111 3456889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii---vsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLL---ITHDIEEAVFMATELVLLS 203 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence 9999999999998887432 679999 5566666655 8998885
No 84
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.6e-24 Score=173.90 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=96.0
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+.+.+|+.+++........ .....+ ..+++.++++.+||. ...++++++||||||||++|||||+.+|++||+|
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD 179 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINT--SLSAAE--RREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179 (327)
T ss_pred hcCCccCHHHHHHHHHHHcc--CCCHHH--HHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 57788999999875432211 111112 456788999999996 4679999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+.++++.+. |.||++ .|||+..+.. |+|+++.+
T Consensus 180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~---iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVF---ISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 679999 8889998876 99998863
No 85
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=173.65 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+.+.+|+.+++........ .....+ ..+++.++|+.+||.+ ..++++++|||||||||+|||||+.+|++||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~--~~~~~~--~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQ--GGNKKT--RRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 57788999888765432111 111112 4567889999999964 4688999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+||||+|||+.++.++++.+. |.++++ .|||+..+.. |+|+++.+
T Consensus 177 lDEPts~LD~~~~~~il~lL~~l~~~~g~til~---iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 177 ADEPTTALDVTIQAQIIELLLELQQKENMALVL---ITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999998888543 679999 8889988865 99998853
No 86
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=169.77 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=92.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++..|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 93 ~~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 93 QFVGATVEDDVAFGLENK---GIPHEE--MKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred hcccccHHHHHHhhHHhC---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 466789999998753211 111112 345788999999999989999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.||+++||..+.+. ..|++++|.+
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~--~~dri~~l~~ 215 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA--LSDRVLVMKN 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence 99999999998887532 679999555544442 2489988864
No 87
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6e-24 Score=165.27 Aligned_cols=118 Identities=19% Similarity=0.350 Sum_probs=91.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc--ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE--HKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~--~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
+.+++.+|+++|+.++.... ...... ..+++.++++.+|+.. ..++++.+||||||||++|||||+.+|++||
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 84 IGLFPHMTVEENIALVPKLL---KWPKEK--IRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccccCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35677899999998753221 111111 3456788999999985 7899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. +.+|+++|| +...+.. |++++|.+
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH---~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH---DIDEAFRLADRIAIMKN 211 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec---CHHHHHHhCCEEEEEEC
Confidence 999999999999998877433 678999555 5554433 88888753
No 88
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.8e-24 Score=170.09 Aligned_cols=113 Identities=23% Similarity=0.283 Sum_probs=92.0
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
..|+.+|+.++.... ..+..+ ...++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||||+
T Consensus 99 ~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~ 173 (288)
T PRK13643 99 EETVLKDVAFGPQNF---GIPKEK--AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173 (288)
T ss_pred cchHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 469999998764211 111122 456788999999996 57799999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+++.+. |.||++ .|||+.++.. ||++++.+
T Consensus 174 gLD~~~~~~l~~~l~~l~~~g~til~---vtHd~~~~~~~~dri~~l~~ 219 (288)
T PRK13643 174 GLDPKARIEMMQLFESIHQSGQTVVL---VTHLMDDVADYADYVYLLEK 219 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 999999998887543 679999 7788887765 99998864
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=7e-24 Score=167.77 Aligned_cols=119 Identities=14% Similarity=0.213 Sum_probs=93.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... ....... ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 93 ~~~~~~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 93 GALFTDMNVFDNVAYPLREH--TQLPAPL--LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred cccCCCCCHHHHHHHHHHHc--cCCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 35677899999998753211 0001111 3356778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.+|++ .+||+..+.. |++++|.+
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii---vsH~~~~~~~~~d~v~~l~~ 219 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVV---VSHDVPEVLSIADHAYIVAD 219 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhhCEEEEEEC
Confidence 9999999999998877433 579999 5566666655 88888753
No 90
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=170.70 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=91.0
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
..|+.+|+.++.... .....+ ..+++.++++.+||. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus 100 ~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~ 174 (290)
T PRK13634 100 EETVEKDICFGPMNF---GVSEED--AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174 (290)
T ss_pred hhhHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 579999998763211 111112 345788999999997 56799999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+++.+. |.||++ .+||+.++.. |||++|.+
T Consensus 175 ~LD~~~~~~l~~~L~~l~~~~g~tvii---itHd~~~~~~~~drv~~l~~ 221 (290)
T PRK13634 175 GLDPKGRKEMMEMFYKLHKEKGLTTVL---VTHSMEDAARYADQIVVMHK 221 (290)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999998887542 679999 6777777655 99998864
No 91
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-24 Score=173.23 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=100.0
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
|..++-|-+|+.+.+.-....+... ..+.+ ..+++.++|+.+||.+ ..+.+|++|||||+|||+||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~-~~~~e--a~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKG-LSKKE--AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcc-hhhHH--HHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC
Confidence 4566788889988887654332111 01122 5678999999999975 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+||.||||++||+..+.++++.+. |.++++ .|||+..+.. |||+++.
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil---ITHDl~vva~~aDri~VMY 228 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALIL---ITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcceEEEEE
Confidence 999999999999999999998654 679999 9999999998 9999874
No 92
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=8.9e-24 Score=161.15 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=90.8
Q ss_pred CCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 16 PKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
..+|+.+|+.++...... ....... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 83 FPISVRDVVLMGLYGHKGLFRRLSKA--DKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred CCCcHHHHHHhccccccccccCCCHH--HHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 347999999875321100 0000011 3456888999999998889999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.+|++ .+||+.++.. |+++++.+
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 161 AGVDPKTQEDIYELLRELRREGMTILV---VTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEcC
Confidence 9999999998888543 578999 6666666654 89988864
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=7.5e-24 Score=177.15 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=96.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++...+.. .+........+++.++++.+|+.+..++++.+||||||||++|||||+++|++|||||
T Consensus 87 ~l~~~~tv~e~v~~~~~~~~~-~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 87 SLSFEFDVRQVVEMGRTPHRS-RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCCCCCHHHHHHhccchhcc-cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 456789999999886422110 0110011145678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.++ +.||++ .+||+..+.+ ||+++|.+
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIi---vsHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLVDDGKTAVA---AIHDLDLAARYCDELVLLAD 214 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999998877433 679999 7788888876 89988864
No 94
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=8.5e-24 Score=163.87 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=93.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++.... ...... ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++||||
T Consensus 84 ~~~~~~t~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALH---GLSRAE--ARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred CCcccCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4567899999998653221 111111 34567889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|+++||....+. . .|++++|.+
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~~ 207 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLHR 207 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEeC
Confidence 999999999998887432 679999776666654 2 488888753
No 95
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=8.2e-24 Score=160.26 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=92.7
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+++.+|+++|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYK---KLSKKE--KREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred chhhccCCcHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 345677899999998753211 111112 345788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
||||+|||+.++..+++.++ +.+|+++||..+.+. ..|++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK--QADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh--hcCEEEeC
Confidence 99999999999999888554 679999666655332 23887764
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.7e-24 Score=164.88 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=94.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhh-----HHh-----hhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317 12 DSMDPKKTPLTRMQISNGMMV-----LAA-----MFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~-----~~~-----~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL 81 (137)
+.+++.+|+.+|+.++..... ... ......+..+.+.++++.+|+.+..++++.+||||||||++|||||
T Consensus 89 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 168 (255)
T PRK11300 89 VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCM 168 (255)
T ss_pred cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHH
Confidence 557788999999987532100 000 0000111234678899999999889999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+.+|++|||||||+|||+.++..+++.+. +.||++ .+|++.++.. |++++|.+
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL---IEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998888553 679999 6667777655 88888754
No 97
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=1e-23 Score=163.62 Aligned_cols=119 Identities=25% Similarity=0.304 Sum_probs=93.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++... .. .....+ ..+++.++++.+|++...++++..||||||||++|||||+.+|++||||
T Consensus 86 ~~~~~~~tv~~~l~~~~~~-~~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 86 FYLFPHLTALENVMFGPLR-VR-GASKEE--AEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred cccCCCCcHHHHHHhHHHH-hc-CCCHHH--HHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3467789999999865311 00 111111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 211 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAEEGMTMVI---VTHEIGFAEKVASRLIFIDK 211 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888553 679999 5556666544 88888753
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.91 E-value=9.8e-24 Score=161.47 Aligned_cols=116 Identities=17% Similarity=0.298 Sum_probs=91.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc-CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+++|+.++..... . .. ..+++.++++.+ ++....++++.+||||||||++|||||+.+|++|||
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~--~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 84 RRIFPELTVEENLLLGAYARR--R---AK--RKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred cccCCCCcHHHHHHHHhhhcC--c---hh--HHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 346788999999987542211 0 11 334566788888 577788999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .+||+..+.. |+++++.+
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILL---VEQNARFALEIADRAYVLER 207 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhccEEEEeeC
Confidence 99999999999998888653 679999 5566665554 88888753
No 99
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=1.2e-23 Score=162.41 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
..+++.+|+.+|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLG---LSRKE--IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345678999999987532110 01111 3456778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||..++.. |++++|.+
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 217 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVIL---VSHDPSSIKRLCDRALVLEK 217 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999988877543 579999 5566666544 88888754
No 100
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=8.5e-24 Score=162.67 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=91.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc--CCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM--TSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.++ .+|+++|+.++..... ...... ..+++.++++.+|+.+..+++ +.+||||||||++|||||+.+|++|||
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 165 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEE--LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHH--HHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 345 7899999987532210 000011 345778899999998877766 599999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. ..+|++ .+||+.++.. |++++|.+
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 166 DEPTSALDPISTAKIEELIAELKKEYTIVI---VTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhhCcEEEE---EeccHHHHHHhCCEEEEEeC
Confidence 99999999999999988654 248889 6677776655 89988864
No 101
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=8.4e-24 Score=180.47 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++..... ....+ ..+++.++++.+|+++..++++.+|||||||||+|||||+.+|++|||||
T Consensus 120 ~~~~~~tv~~~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDE 194 (520)
T TIGR03269 120 ALYGDDTVLDNVLEALEEIG---YEGKE--AVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADE 194 (520)
T ss_pred ccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeC
Confidence 56778999999987532111 11112 34678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 195 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvii---vtHd~~~~~~~~d~i~~l~~ 244 (520)
T TIGR03269 195 PTGTLDPQTAKLVHNALEEAVKASGISMVL---TSHWPEVIEDLSDKAIWLEN 244 (520)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEeC
Confidence 999999999999866332 679999 6667776655 89988854
No 102
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=1.3e-23 Score=160.52 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=91.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... . .... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL--K-LNAE--QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC--C-ccHH--HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 457778999999976421110 0 0011 3456788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+|+..+... |+++++.+
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~---vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLM---VTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhcCeEEEEEC
Confidence 9999999999998877432 569999 4555555433 88888753
No 103
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=171.28 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++ .|+++|+.++.... .....+ ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||
T Consensus 129 l~~-~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDE 202 (320)
T PRK13631 129 LFK-DTIEKDIMFGPVAL---GVKKSE--AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDE 202 (320)
T ss_pred ccc-chHHHHHHhhHHhc---CCCHHH--HHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 454 59999998763211 111112 345788899999997 67899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 203 PtsgLD~~~~~~l~~~L~~l~~~g~Tiii---vtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 203 PTAGLDPKGEHEMMQLILDAKANNKTVFV---ITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 999999999998888553 679999 7777776654 99998864
No 104
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=162.73 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=93.0
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+++.+|+.+|+.++..... . .... ..+++.++++.+|+....++++..||||||||++||||++.+|+++||
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL--K-LNAA--QREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred ccccccCCcHHHHHhccccccc--C-CCHH--HHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3457778999999986521110 0 0011 345688899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+.+.+. +.||++ .+||+.++.. |++++|.+
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLM---VSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 99999999999988877432 569999 5566665544 88888753
No 105
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=1.9e-23 Score=162.06 Aligned_cols=123 Identities=21% Similarity=0.314 Sum_probs=93.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhH--Hhh-hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVL--AAM-FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~--~~~-~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
+.+++.+|+.+|+.++...... ... ........+++.++++.+|+....+++++.||||||||++|||||+.+|++|
T Consensus 86 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 86 PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4577889999999875321100 000 0000113457888999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.++ +.+|++ .+|++..+.. |++++|.+
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAGKHSVVV---VEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999988654 569999 5555655543 88888753
No 106
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.1e-24 Score=179.88 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=95.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++............. ..+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||||
T Consensus 92 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 92 ALVKELSVLENIFLGNEITPGGIMDYDA--MYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred ccCCCCcHHHHhhhcccccccCCcCHHH--HHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4677899999998764221000000111 34578899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.+|++ .+||+..+.. |++++|.+
T Consensus 170 Pt~~LD~~~~~~l~~~l~~l~~~~~tvi~---~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 170 PTASLTESETAVLLDIIRDLKAHGIACIY---ISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHHhcCEEEEEEC
Confidence 999999999998888543 568999 6677777765 89998864
No 107
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=1.5e-23 Score=171.08 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+.+.+|+.+++........ .....+ ..+++.++++.+|+.+ ..++++++|||||+||++|||||+.+|++||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~--~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAE--AFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 57788999999876532211 111112 4467888999999974 3478999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+||||+|||+.++.++++.+. +.+|++ .|||+..+.. |+++++.+
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~---iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIM---ITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999999998888433 679999 8888888865 99999863
No 108
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=8.2e-24 Score=181.22 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=103.4
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
.|+.++.|.+||.+++......+... ...+ ..+++.++++.+|+.. .++++|++||||||||++|||||+.+|++
T Consensus 375 dp~~SLnPr~tV~~~i~epL~~~~~~--~~~~--~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l 450 (539)
T COG1123 375 DPYSSLNPRMTVGDILAEPLRIHGGG--SGAE--RRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL 450 (539)
T ss_pred CcccccCccccHHHHHHhHHhhhccc--chHH--HHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE
Confidence 57888999999999998765433211 1122 4567999999999986 68999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||||+||+..+.++++.+. |.|.+| .+|||..+.. |||.++.
T Consensus 451 li~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf---ISHDl~vV~~i~drv~vm~ 504 (539)
T COG1123 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF---ISHDLAVVRYIADRVAVMY 504 (539)
T ss_pred EEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEE---EeCCHHHHHhhCceEEEEE
Confidence 99999999999999999999655 679999 8999999988 9998875
No 109
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.90 E-value=2.4e-23 Score=163.29 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=91.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+++|+.++.... ... .... ..+++.++++.+|+.+.. ++++.+||||||||++|||||+.+|++|||
T Consensus 101 ~~l~~~~sv~enl~~~~~~~-~~~-~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 101 FNLWSHMTVLENVMEAPIQV-LGL-SKQE--ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred cccCCCCcHHHHHHHHHHHh-CCC-CHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34677799999997643111 000 1112 345788899999998764 889999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. |.+|+++ +||...+.. ||+++|.+
T Consensus 177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv---sH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVV---THEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE---eCCHHHHHHhcCEEEEEEC
Confidence 99999999999998888432 6799994 555555544 88888753
No 110
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=2.1e-23 Score=162.64 Aligned_cols=117 Identities=24% Similarity=0.265 Sum_probs=91.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++..... ...... ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 166 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHG--IKDKKE--LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVL 166 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcC--CCCHHH--HHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4566 999999987532210 001111 345778899999998 6788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELKKKYTIVI---VTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCeEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888554 468999 6666666554 88888754
No 111
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.8e-23 Score=162.20 Aligned_cols=119 Identities=23% Similarity=0.270 Sum_probs=95.4
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+++.+|+.+|+.+..... .....+ ..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++++|
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 153 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKR---KVDKKE--IERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLL 153 (235)
T ss_pred cCccCCCccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 345677899999998653211 000112 345677899999999989999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.++ +.||++ .+|++.++.. |+++++++
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~~~~tili---~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLH---VTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 99999999999998888543 679999 6677777654 88888753
No 112
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=167.97 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=90.7
Q ss_pred CCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317 18 KTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP 96 (137)
Q Consensus 18 lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg 96 (137)
.|+.+|+.++.... .....+ ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 101 ~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~ 175 (286)
T PRK13646 101 DTVEREIIFGPKNF---KMNLDE--VKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175 (286)
T ss_pred hhHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 59999998763211 111112 445788999999997 678899999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 97 LHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 97 LD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+.++..+.+.+. |.||++ .+||+.++.. ||++++++
T Consensus 176 LD~~~~~~l~~~l~~l~~~~g~tvl~---vtH~~~~~~~~~dri~~l~~ 221 (286)
T PRK13646 176 LDPQSKRQVMRLLKSLQTDENKTIIL---VSHDMNEVARYADEVIVMKE 221 (286)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 99999998877543 679999 7777777654 99988864
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=2.1e-23 Score=160.03 Aligned_cols=117 Identities=22% Similarity=0.285 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-HHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-ISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+++.+|+++|+.++...... . .... .... +.++++.+++. ...++++.+||||||||++|||||+.+|++||||
T Consensus 95 ~~~~~tv~~nl~~~~~~~~~-~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 95 LNPRMTIGEQIAEPLRIHGK-L--SKKE-ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred cCCcCCHHHHHHHHHHhccC-C--cHHH-HHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 55679999999865321110 0 0110 1122 35789999995 5789999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLF---ITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCeEEEEeC
Confidence 9999999999998888542 679999 5666666654 89988864
No 114
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=162.01 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=92.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+... ... ...... ..+++.++++.+|+....++++.+||||||||++|||||+.+|+++|||
T Consensus 91 ~~~~~~~tv~e~i~~~~~-~~~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD 166 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPC-RVL-GLSKDQ--ALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD 166 (242)
T ss_pred ccccCCCcHHHHHHHHHH-HHc-CCCHHH--HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 456778999999975321 100 001111 3456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||..+... |++++|.+
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~---~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 167 EPTAALDPEITAQIVSIIRELAETGITQVI---VTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999998887544 679999 5555555543 88888754
No 115
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=170.33 Aligned_cols=121 Identities=16% Similarity=0.274 Sum_probs=93.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHh-hhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAA-MFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+.+.+|+.+++........... +........+++.++|+.+||.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 35778899999975321110000 00000113457889999999974 458999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++.++++.+. |.||++ .|||+..+.. |+++++.
T Consensus 181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~---itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL---ISHDLQMLSQWADKINVLY 233 (330)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEE
Confidence 9999999999999998888544 679999 8888888876 9998875
No 116
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=166.81 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=93.6
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
+++..|+.+|+.++.... .....+ ..+++.++++.+|+....++++..||||||||++|||||+.+|++||||||
T Consensus 93 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 93 QFVGATVQDDVAFGLENI---GVPREE--MVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred hcccccHHHHHhhhHhhC---CCCHHH--HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 566789999998753221 111112 345788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.++ +.||+++||..+.+.. .|++++|.+
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~--~d~i~~l~~ 215 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ--ADRVIVMNK 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc--CCEEEEEEC
Confidence 99999999999988554 6799996666555531 489888764
No 117
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.90 E-value=3.3e-23 Score=159.62 Aligned_cols=124 Identities=20% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHH-HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISE-ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+.+|+.++............. ...++.+ +++.+++....++.+..|||||+||++|||||+.+|++|||
T Consensus 90 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illl 167 (226)
T cd03234 90 DILLPGLTVRETLTYTAILRLPRKSSDAI--RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL 167 (226)
T ss_pred CccCcCCcHHHHHHHHHHhhcccccchHH--HHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678899999998754221111000011 2234555 89999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||+++||..++.-....|+++++.+
T Consensus 168 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 99999999999998888553 579999555443222233488888753
No 118
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=164.35 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=91.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++. . . . ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 90 ~~l~~~~tv~enl~~~~--~--~-----~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGL--K--G-----Q--WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred ccCCCCCcHHHHHHhcc--c--c-----h--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34677799999998642 1 0 1 2346778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tvii---vsHd~~~~~~~~d~i~~l~~ 209 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLL---VTHDVSEAVAMADRVLLIEE 209 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998877542 679999 5566665443 88888753
No 119
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=2.6e-23 Score=158.16 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=93.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++...+ . .. ..+++.++++.+|+.+..++++..||||||||++|||||+++|+++|||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~---~---~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 83 PGIKTELTALENLRFYQRLH---G---PG--DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred cccCcCCcHHHHHHHHHHhc---C---cc--HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45677899999998753211 1 12 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
|||+|||+.++..+++.+. +.||+++||....+.+ -.+|+|.+
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS-DKVRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc-CCceEEec
Confidence 9999999999998888543 6799997777777665 33677765
No 120
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=2.1e-23 Score=162.12 Aligned_cols=118 Identities=21% Similarity=0.194 Sum_probs=93.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+...... ....+ ..+++.++++.+|+.+..++++..||||||||++||+||+.+|++||||
T Consensus 104 ~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 104 TQLWWDLPVIDSFYLLAAIYD---LPPAR--FKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred cccCCCCcHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 356778999999986532211 11111 3456778999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||..++.. |++++|.+
T Consensus 179 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLL---TSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence 9999999999998888543 569999 5666665544 88888753
No 121
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.90 E-value=2.6e-23 Score=159.72 Aligned_cols=115 Identities=22% Similarity=0.323 Sum_probs=93.0
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
++.+++.+|+++|+.++.... .. ...++.++++.+|+.+..++++.+|||||+||++||||++.+|++|||
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll 148 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLL-------GL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL 148 (223)
T ss_pred CCCccccCCHHHHHHHHHHHc-------CC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 345677899999997653211 11 134677899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.+|++ .+||..++.. |++++|++
T Consensus 149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 149 DEPTNGLDPIGIQELRELIRSFPEQGITVIL---SSHILSEVQQLADHIGIISE 199 (223)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHHhcCEEEEEeC
Confidence 99999999999998888543 568999 6666666654 88888753
No 122
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=165.75 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+...|+.+|+.++.... .....+ ..+++.++++.+|+....++++..||||||||++|||||+.+|++|||||||
T Consensus 90 ~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 90 FVGRTVEEDLAFGPENL---CLPPIE--IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred cccchHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 55689999998653211 011112 3456888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||+.++..+++.+. |.||+++||..+.+. ..|++++|.+
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~--~~d~v~~l~~ 210 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH--DADRIIVMDR 210 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh--hCCEEEEEEC
Confidence 9999999998888553 679999666555542 1489888753
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=166.37 Aligned_cols=115 Identities=21% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+...|+++|+.++.... ..+... ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||||
T Consensus 95 ~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 95 LFSASVYQDVSFGAVNL---KLPEDE--VRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred hccccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34579999998753211 111112 3457888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. |.||++ .+||+..+.. ||+++|++
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~till---vsH~~~~~~~~~dri~~l~~ 217 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIII---ATHDIDIVPLYCDNVFVMKE 217 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999998777432 679999 6777777664 99998864
No 124
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=182.29 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=95.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+++.+||.+|+.++...+. .....+ ..+++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 116 ~l~~~~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLl 191 (623)
T PRK10261 116 SLNPVFTVGEQIAESIRLHQ--GASREE--AMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191 (623)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 46778999999987642210 111112 4567889999999963 5789999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+..+.++++.+. |.+|++ .|||+.++.. |||++|.+
T Consensus 192 lDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~---itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 192 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF---ITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred EeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEeeC
Confidence 999999999999888777432 679999 7888888766 99999864
No 125
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.90 E-value=2.9e-23 Score=162.28 Aligned_cols=119 Identities=28% Similarity=0.381 Sum_probs=93.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++..|+.+|+.++.... . ...... ...++.++++.+|+.+..++.+.+|||||+||++|||||+.+|++||||
T Consensus 96 ~~~~~~~tv~~nl~~~~~~~-~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 96 FNLFPHKTVLDNVTEAPVLV-L-GMARAE--AEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred cccCCCCcHHHHHHHHHHHh-c-CCCHHH--HHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 35677899999998752110 0 001111 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLL---VTHEMGFAREFADRVCFFDK 222 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999998877443 679999 6666766644 89888864
No 126
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.3e-23 Score=158.74 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=98.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.++|+||..||+.++..+..- ...+ ....+.++|+.+|+....+.+|++||||+||||+||||++..|++||.|
T Consensus 97 F~Lip~ltAlENV~lPleL~ge---~~~~--~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD 171 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGE---SSAD--SRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD 171 (228)
T ss_pred eeccccchhhhhccchhhhcCC---cccc--HHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc
Confidence 4578999999999988654321 1122 3456889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEe
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
|||.+||..+-.++.+.+. |.|..+ +|||-+.|.| +|.+-+
T Consensus 172 EPTGNLD~~Tg~~iaDLlF~lnre~G~TlVl---VTHD~~LA~Rc~R~~r~ 219 (228)
T COG4181 172 EPTGNLDRATGDKIADLLFALNRERGTTLVL---VTHDPQLAARCDRQLRL 219 (228)
T ss_pred CCCCCcchhHHHHHHHHHHHHhhhcCceEEE---EeCCHHHHHhhhheeee
Confidence 9999999999998887543 778889 8999999999 776654
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=161.36 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++.+|+.+|+.++...... .....+ ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 168 (250)
T PRK14247 92 NPIPNLSIFENVALGLKLNRL-VKSKKE--LQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL 168 (250)
T ss_pred ccCCCCcHHHHHHHHHHhccc-cCCHHH--HHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 367789999999875321110 000111 3456788999999853 568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|++
T Consensus 169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 169 LADEPTANLDPENTAKIESLFLELKKDMTIVL---VTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999998888554 568999 6666666544 88888753
No 128
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=2e-23 Score=156.87 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=80.5
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
...|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAE--VERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3579999998753211 001111 34567889999999988999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317 96 PLHKAEFTPKYERKV-----DTKVDYTGNR 120 (137)
Q Consensus 96 gLD~~~~~~i~~~~~-----~~~v~~~~~~ 120 (137)
|||+.++..+++.+. +.+|+++||.
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999998888544 6799994443
No 129
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=161.33 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=92.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++..... ...... ...++.++++.+|+.+..++++..||||||||++|||||+.+|++||||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 87 ASIFRRLSVYDNLMAVLQIRD--DLSAEQ--REDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred CcccccCcHHHHHhhhhhccc--ccCHHH--HHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 346777999999986532110 001111 3457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+.+.+. +.+|++ .+|++..+.. |++++|.+
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii---~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLI---TDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhcCEEEEEeC
Confidence 9999999999987776432 679999 5566655544 88888753
No 130
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=177.68 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+++|+.++...... ....... ..+++.++++.+|+.+..++++++||||||||++|||||+.+|++||||
T Consensus 89 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 166 (501)
T PRK10762 89 NLIPQLTIAENIFLGREFVNRFGRIDWKK--MYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD 166 (501)
T ss_pred hccCCCcHHHHhhhccccccccCccCHHH--HHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 567889999999876321100 0000011 3456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii---~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKSQGRGIVY---ISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 9999999999998876443 569999 6677776655 89998864
No 131
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=157.14 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=94.7
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+..++|.+||.+|+.-.. .+.. +.++.+ ...++.++|+++.+.+++|+.|-.|||||+|||+||||||.+|++|++
T Consensus 90 qy~lwphltv~enlieap-~kv~-gl~~~q--a~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRVL-GLSKDQ--ALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHHh-CCCHHH--HHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence 456899999999987543 1211 223333 567889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEE
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCL 134 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~ 134 (137)
||||++|||.-..++....+ |+|-.+ .||.+..|.. .+|..
T Consensus 166 deptaaldpeitaqvv~iikel~~tgitqvi---vthev~va~k~as~vvy 213 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKELAETGITQVI---VTHEVEVARKTASRVVY 213 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHHHhcCceEEE---EEeehhHHHhhhhheEe
Confidence 99999999999888777544 455556 7899998877 55543
No 132
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=162.36 Aligned_cols=116 Identities=24% Similarity=0.285 Sum_probs=90.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ +|+++|+.++.... ...... ..+++.++++.+|+. ...++++..||||||||++|||||+.+|++|
T Consensus 103 ~~~~-~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 176 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIH---GANKKD--LDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKII 176 (258)
T ss_pred ccCc-ccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3555 89999998753211 111111 345678899999984 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVI---VTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888554 578999 6667776655 99988753
No 133
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.5e-23 Score=164.35 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+...|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|++|||||||
T Consensus 91 ~~~~tv~e~i~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 165 (275)
T PRK13639 91 LFAPTVEEDVAFGPLNL---GLSKEE--VEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 (275)
T ss_pred hccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34579999998653211 111112 3456888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.||++ .+||+..+.. |+++++++
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~~til~---vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIII---STHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999998888543 679999 6666666654 89988864
No 134
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.6e-23 Score=164.43 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
+...|+.+|+.++.... ...... ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++|||||||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 91 IFSPTVEQDIAFGPINL---GLDEET--VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred cccccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34689999998653211 111111 3456789999999998899999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli---~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIF---STHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999888543 679999 6667766644 88888753
No 135
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=180.92 Aligned_cols=118 Identities=21% Similarity=0.283 Sum_probs=96.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+.++..... .....+ ..+++.++|+.+||. ...++++++|||||||||+|||||+.+|++||||
T Consensus 413 ~l~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 413 SLDPRQTVGDSIMEPLRVHG--LLPGKA--AAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred hcCCCCCHHHHHHHHHHHcC--CCCHHH--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 47888999999986532211 000112 346788999999996 5789999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++.++++.+. |.+|++ .+||+.++.. |+|++|.+
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~---isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLF---ISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999988652 679999 7888888876 99998864
No 136
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.2e-23 Score=160.54 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=90.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc-CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+.+|+.++.... .. .. ..+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 89 ~~~~~~~tv~~~l~~~~~~~--~~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 89 RRVFSRMTVEENLAMGGFFA--ER---DQ--FQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred cccCCCCcHHHHHHHhhhcc--Ch---hH--HHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 34677799999998753111 10 11 234566778888 577778889999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFL---VEQNANQALKLADRGYVLEN 212 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHhhCCEEEEEeC
Confidence 99999999999998877543 679999 5667766655 89988853
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.3e-23 Score=164.11 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++.+|+++|+.++.... .+...+ ...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 95 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 95 QFIGATVEDDIAFGLENK---KVPPKK--MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred hcCcccHHHHHHhHHHHc---CCCHHH--HHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 466789999998753211 111111 345678899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.+. +.+|+++||..+.+. ..|++++|.+
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~v~~l~~ 217 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSE 217 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh--hCCEEEEEEC
Confidence 99999999998888553 369999777666553 2488888864
No 138
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=178.48 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=101.0
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC--ccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT--TMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~--~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
.|+.++-|-+|+.+.+.-....+... ...+ ..+++.++|+.+||.+... ++|++||||||||+.||+||+.+|+
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~--~~~e--a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~ 174 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKG--SRAE--ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK 174 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccc--cHHH--HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCC
Confidence 46667778899988887654443211 1223 6678999999999987654 4999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+||+||||++||+..+.+|++.++ |.++++ .|||+..+.. |||+++.
T Consensus 175 LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~---ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLF---ITHDLGVVAELADRVVVMY 229 (539)
T ss_pred EEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEE---EcCCHHHHHHhcCeEEEEE
Confidence 999999999999999999999665 669999 8999999988 9999874
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.90 E-value=3.7e-23 Score=162.63 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=94.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhh---HH--hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 12 DSMDPKKTPLTRMQISNGMMV---LA--AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~---~~--~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
+.+++.+|+++|+.++..... .. ...... ...++.++++.+|+.+..++++..||||||||++|||||+.+|+
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE--QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHH--HHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence 356778999999986531000 00 000111 34578899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||||||+|||+.++..+.+.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii---~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVV---TLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999998887543 679999 6777776655 88888753
No 140
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2e-23 Score=162.60 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=95.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
..+|+.+||.||+.++....... .. .....+++.+.|- |.+..+++.++|||||||.++||||||.+|++|+|
T Consensus 87 R~iF~~LTVeENL~~g~~~~~~~----~~--~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 87 RRIFPRLTVEENLLLGAYARRDK----EA--QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred ccchhhCcHHHHHhhhhhccccc----cc--ccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 45899999999999875322110 11 1222677888884 77889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||.||-|.-.++|++.+. +.||++ ..||..+|.. ||+|++.
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL---VEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILL---VEQNARFALEIADRGYVLE 211 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE---EeccHHHHHHhhCEEEEEe
Confidence 99999999999999988544 448998 9999999998 9999974
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.8e-23 Score=164.79 Aligned_cols=117 Identities=22% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++..|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++..|||||+||++|||||+.+|++||||||
T Consensus 96 ~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEP 170 (282)
T PRK13640 96 QFVGATVGDDVAFGLENR---AVPRPE--MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDES 170 (282)
T ss_pred hhccCCHHHHHHhhHHhC---CCCHHH--HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 466789999998653111 111112 345788899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.+|+++||..+.+. ..|++++|.+
T Consensus 171 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~--~~d~i~~l~~ 218 (282)
T PRK13640 171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN--MADQVLVLDD 218 (282)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence 99999999998887543 679999666655542 2499998864
No 142
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.3e-23 Score=160.76 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=93.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++..... ..+.........++.++++.+|+....++++..|||||+||++|||||+.+|++|||||
T Consensus 86 ~~~~~~tv~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 164 (255)
T PRK11231 86 LTPEGITVRELVAYGRSPWL-SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164 (255)
T ss_pred CCCCCccHHHHHHhccchhh-hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45667899999987521110 00000011134567889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 165 P~~~LD~~~~~~l~~~l~~l~~~~~tiii---~tH~~~~~~~~~d~i~~l~~ 213 (255)
T PRK11231 165 PTTYLDINHQVELMRLMRELNTQGKTVVT---VLHDLNQASRYCDHLVVLAN 213 (255)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEE---EECCHHHHHHhcCEEEEEEC
Confidence 999999999998888543 679999 6777777665 88888864
No 143
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.89 E-value=4.8e-23 Score=159.24 Aligned_cols=116 Identities=27% Similarity=0.342 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC---cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ---EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~---~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+++.+|+.+|+.+...... . .... ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||
T Consensus 75 ~~~~~t~~~~~~~~~~~~~--~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSLG--K-LSKQ--ARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCcccCHHHHHHHHHHHcC--c-cHHH--HHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4456899999875432110 0 0111 345688899999998 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .+|++.++.. |++++|.+
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILL---ITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999988777433 568999 5666666544 89988863
No 144
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=3.9e-23 Score=176.86 Aligned_cols=119 Identities=20% Similarity=0.347 Sum_probs=95.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+.++...... .....+ ..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|++||||
T Consensus 374 ~l~~~~tv~e~l~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 450 (529)
T PRK15134 374 SLNPRLNVLQIIEEGLRVHQP-TLSAAQ--REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD 450 (529)
T ss_pred hcCCcccHHHHHHHHHHhccc-cCChHH--HHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 367789999999875321100 001111 345788999999997 5789999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~---vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLF---ISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEE---EeCCHHHHHHhcCeEEEEEC
Confidence 9999999999998888653 679999 7788887776 99998864
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=5.8e-23 Score=162.07 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++.+|+.+|+.+..... ....... ..+++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||
T Consensus 101 ~~~~~tv~~~l~~~~~~~--~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE 176 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHL--TSLDESE--QKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176 (265)
T ss_pred cCCCCCHHHHHHHHHHHh--cCCCHHH--HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 556799999997643111 0111111 345788899999996 67899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii---vsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLF---ITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHHhcEEEEEeC
Confidence 999999999887777442 679999 6677777654 88888753
No 146
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=176.25 Aligned_cols=120 Identities=21% Similarity=0.252 Sum_probs=95.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++............+ ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 89 HLVPEMTVAENLYLGQLPHKGGIVNRRL--LNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred hccCCCCHHHHHHhcccccccCCCCHHH--HHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4677899999998753211000000111 34578889999999888899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii---itHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILY---VSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999887554 679999 7777777765 89988863
No 147
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=176.17 Aligned_cols=122 Identities=22% Similarity=0.245 Sum_probs=95.0
Q ss_pred CCCCCCCHHHHHHhhhhhhh-HHhhh-hcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMV-LAAMF-NQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~-~~~~~-~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+++.+|+++|+.++..... ..... .......+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllL 169 (510)
T PRK09700 90 SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIM 169 (510)
T ss_pred cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46778999999986532100 00000 00111345788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiii---vsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 170 DEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY---ISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999887543 679999 6777777765 89988853
No 148
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=5.8e-23 Score=161.64 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=92.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh------cCCC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV------NNPP 86 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~------~~P~ 86 (137)
.+++.+|+++|+.++..... ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+ .+|+
T Consensus 86 ~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPHG---LSRAE--DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred cCCCCCCHHHHHHhhhcccC---CCcHH--HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 45577899999987532110 00111 3456788999999998889999999999999999999999 5999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||||||+|||+.++..+.+.+. +.||++ .+||+.++.. |++++|.+
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV---VLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhcCEEEEEEC
Confidence 999999999999999987777432 679999 6677777654 89988753
No 149
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.3e-23 Score=163.29 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=88.9
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
..|+++|+.++.... .....+ ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus 100 ~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 174 (280)
T PRK13649 100 EETVLKDVAFGPQNF---GVSQEE--AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174 (280)
T ss_pred cccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 479999998653211 011112 345678899999997 46799999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 175 GLDPKGRKELMTLFKKLHQSGMTIVL---VTHLMDDVANYADFVYVLEK 220 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE---EeccHHHHHHhCCEEEEEEC
Confidence 999999998888543 679999 5666666644 88888753
No 150
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=162.99 Aligned_cols=114 Identities=21% Similarity=0.187 Sum_probs=89.3
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
...|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 91 ~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~ 165 (271)
T PRK13638 91 FYTDIDSDIAFSLRNL---GVPEAE--ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTA 165 (271)
T ss_pred ccccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 3457888887642111 111111 34567889999999988899999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~g~tii~---vtH~~~~~~~~~d~i~~l~~ 211 (271)
T PRK13638 166 GLDPAGRTQMIAIIRRIVAQGNHVII---SSHDIDLIYEISDAVYVLRQ 211 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999998887543 568999 5666666654 88888753
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.1e-23 Score=160.36 Aligned_cols=120 Identities=24% Similarity=0.237 Sum_probs=91.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
+.+++.+|+.+|+.++...... ...... ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 170 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGL-VKSKKE--LDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI 170 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCc-cCCHHH--HHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4567789999999875321110 000111 335677889999984 356889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVL---VTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEE---EECCHHHHHhhCCEEEEEEC
Confidence 99999999999999998888554 468999 6666666554 89988853
No 152
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.8e-23 Score=175.46 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHH-h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLA-A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~-~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+++++|+.+|+.++....... . ..... ..+++.++++.+|+. ...++++++||||||||++|||||+.+|++||
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAA--ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHH--HHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 3677899999998753111100 0 00111 345688999999996 57899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~---~sHd~~~~~~~~d~v~~l~~ 480 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV---ISSELPEVLGLSDRVLVMHE 480 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 999999999999998877533 679999 7778887766 99998864
No 153
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=5.5e-23 Score=175.47 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=94.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++... . .. ..+++.++++.+|+....++++++||||||||++|||||+.+|++|||||
T Consensus 96 ~~~~~~tv~e~l~~~~~~--~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 96 LLFPNLSVKENILFGLPK--R-----QA--SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred ccCCCCcHHHHhhccccc--c-----hH--HHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 467889999999875311 0 11 34567889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii---vtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVF---ISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999988654 679999 7777777765 99998863
No 154
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-23 Score=175.12 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=94.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++............. ..+++.++++.+|+....++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDK--MYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHH--HHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4677899999998753110000000111 34578889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii---~tH~~~~~~~~~d~i~~l~~ 209 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVY---ISHKMEEIFQLCDEITILRD 209 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 999999999999977653 679999 6677777665 99998864
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.6e-23 Score=175.57 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=95.1
Q ss_pred CCCCCCCHHHHHHhhhhhh---hHH--h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317 13 SMDPKKTPLTRMQISNGMM---VLA--A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNP 85 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~---~~~--~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P 85 (137)
.+++++|+++|+.++...+ ... . ..... ..+++.++++.+|+. +..++++++|||||||||.|||||+.+|
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p 428 (510)
T PRK09700 351 GFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD--EQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCP 428 (510)
T ss_pred CCcCCCcHHHHhccccccccccccccccccChHH--HHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCC
Confidence 4778899999998753211 000 0 00011 234678899999997 7789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++|||||||+|||+.++..+++.+. |.||++ .+||+..+.. |++++|.+
T Consensus 429 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~---vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 429 EVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM---VSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999998888654 679999 6777777766 99998864
No 156
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=9.1e-23 Score=157.90 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=92.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+...... ..... ..+++.++++.+|+.+..++.+..||+||+||++|||||+.+|+++|||
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKK---LPKAE--IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 446678899999986532211 00111 3456778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.||++ .+|+..++.. |++++|.+
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii---~sh~~~~~~~~~d~i~~l~~ 206 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVF---VTHDQEEALTMSDRIAVMNK 206 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999987542 679999 5555555443 88888753
No 157
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.3e-23 Score=159.85 Aligned_cols=117 Identities=22% Similarity=0.252 Sum_probs=90.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC----CcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL----QEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL----~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.++ .+|+++|+.++.... ....... ..+++.++++.+++ .+..++++.+||||||||++|||||+.+|++|
T Consensus 98 ~~~-~~tv~eni~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 172 (254)
T PRK14273 98 NPF-LMSIYDNISYGPKIH--GTKDKKK--LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVI 172 (254)
T ss_pred ccc-cCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 344 489999998764221 0000111 34567888999987 34578899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+|++.++.. |++++|.+
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 173 LMDEPTSALDPISTGKIEELIINLKESYTIII---VTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888654 568999 6666666654 88888753
No 158
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.7e-23 Score=159.23 Aligned_cols=117 Identities=22% Similarity=0.200 Sum_probs=90.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++..... ...... ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 97 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 171 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNG--VKDKAY--LAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVL 171 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcC--CCCHHH--HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3555 599999987632110 000011 3456788899999853 468889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHELKARYTIII---VTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE---EEecHHHHHHhCCEEEEEEC
Confidence 9999999999999998888654 568999 6677777655 89988853
No 159
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-23 Score=162.70 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=92.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++..|+.+|+.++.... ...... ..+++.++++.+|+.+..++++..||||||||++|||||+.+|++||||||
T Consensus 93 ~~~~~tv~eni~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 93 QFVGATVEDDVAFGMENQ---GIPREE--MIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred hhccCCHHHHHHhhHHHc---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 466789999998653211 111111 345778899999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.+. |.||+++||....+. ..|++++|.+
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~~l~~ 215 (277)
T PRK13642 168 TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRILVMKA 215 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence 99999999999988643 679999555555443 1389988864
No 160
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7e-23 Score=163.03 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP 96 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg 96 (137)
..|+.+|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 100 ~~~v~~~l~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~g 174 (280)
T PRK13633 100 ATIVEEDVAFGPENL---GIPPEE--IRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174 (280)
T ss_pred cccHHHHHHhhHhhc---CCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 468999998763211 111112 345788999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 97 LHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 97 LD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+.++..+++.+. +.||+++||..+.+.. .|++++|++
T Consensus 175 LD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~--~d~v~~l~~ 219 (280)
T PRK13633 175 LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE--ADRIIVMDS 219 (280)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc--CCEEEEEEC
Confidence 99999998887543 6799995555554432 389988864
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=7e-23 Score=157.85 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=90.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+.+|+.++.... . .. ..+.+.++++.++ +....++++.+||||||||++|||||+.+|++|||
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~---~---~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 84 REIFPRLTVEENLLTGLAAL---P---RR--SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred CcccCCCcHHHHHHHHHHhc---C---cc--hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 34677889999998653211 1 11 2234567788887 57778999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~---~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL---VEQYLDFARELADRYYVMER 207 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998888543 579999 5666666654 88888753
No 162
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.89 E-value=1.6e-22 Score=156.62 Aligned_cols=123 Identities=19% Similarity=0.115 Sum_probs=90.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHH-h---hhhcchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLA-A---MFNQSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNP 85 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~-~---~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P 85 (137)
+.+++.+|+.+|+.+........ . ....+ ..+++.++++.+|+. ...++++. .||||||||++|||||+.+|
T Consensus 86 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p 163 (243)
T TIGR01978 86 PEEIPGVSNLEFLRSALNARRSARGEEPLDLLD--FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163 (243)
T ss_pred ccccCCcCHHHHHHHHHHHhhcccccccccHHH--HHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCC
Confidence 35678899999998653211100 0 00011 345688899999997 46788887 59999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
++|||||||+|||+.++..+++.+. +.||+++||..+.+.....|+++++.
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL 219 (243)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEe
Confidence 9999999999999999998888544 67999955544444333248888775
No 163
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.1e-22 Score=155.83 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=93.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... . .. ..+.+.++++.+|+.+..++++..||||||||++||||++.+|++||||
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~---~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLH---G---RR--AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred cccccCCcHHHHHHHHHHhc---C---Cc--HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34677789999998653211 1 11 3346778999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+.+.+. +.+|++ .+||+..+.. ++++.++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 163 EPYANLDLEGITLVNRMISAHLRGGGAALV---TTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EecChhhhhhhcceEEEEe
Confidence 9999999999998888654 679999 6667776665 8888875
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=9.9e-23 Score=156.41 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=94.1
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.++.+++.+|+.+|+.++..... .....+ ..+++.++++.+|+.+..++++.+||+|||||++|||||+.+|++||
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill 164 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQP--NLSYQE--ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL 164 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34567778999999987643221 011112 34578899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. +.+|+++||..+ .. ...|++++|.+
T Consensus 165 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~ 216 (220)
T TIGR02982 165 ADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-IL-DVADRIVHMED 216 (220)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEEEC
Confidence 999999999999987777442 679999665543 21 23399988753
No 165
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9.3e-23 Score=160.90 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=92.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHH-hhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLA-AMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~-~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+.++....... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 95 PAAEGMTVRELVAIGRYPWHGALGRFGAA--DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCccHHHHHHhCcccccccccCCCHH--HHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4677889999998653111000 000011 3456788999999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. +.+|++ .+||+.+... |++++|.+
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii---~sH~~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIA---VLHDINMAARYCDYLVALRG 223 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999987777442 679999 6667776654 88888753
No 166
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.89 E-value=1.5e-22 Score=153.87 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=90.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+++|+.+... . . ..+++.++++.+|+....++++.+||||||||++|||||+.+|++||||
T Consensus 82 ~~~~~~~tv~e~l~~~~~-----~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 82 PGIKTTLSVLENLRFWHA-----D----H--SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred cccCCCcCHHHHHHhhcc-----c----c--cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346677999999976421 0 1 2346778999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
|||+|||+.++..+++.+. +.|++++||...+... ..+++|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~-~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE-AGARELDL 198 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh-ccceeEec
Confidence 9999999999999988653 6799996665555444 23777764
No 167
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=160.47 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=93.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.++..... ............++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 91 ~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 169 (265)
T PRK10253 91 TTPGDITVQELVARGRYPHQ-PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE 169 (265)
T ss_pred cCCCCCcHHHHHHhCccccc-ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45667899999986521100 00000000133467889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 170 Pt~gLD~~~~~~l~~~L~~l~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 170 PTTWLDISHQIDLLELLSELNREKGYTLAA---VLHDLNQACRYASHLIALRE 219 (265)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999998887542 678999 7788877766 88888754
No 168
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=168.39 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=96.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+..+||++||+.|+.++.+.. .....+++.+.+|+++..+++|.+||||+||||+|+|||.+.|++|+|
T Consensus 84 DARLFpH~tVrgNL~YG~~~~-----------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLm 152 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKS-----------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred ccccccceEEecchhhhhccc-----------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeee
Confidence 456899999999999885421 123456789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||.|+||..-+.+++-.+. ++-|+| ++|-+++..| |+|.++.+
T Consensus 153 DEPLaSLD~~RK~EilpylERL~~e~~IPIlY---VSHS~~Ev~RLAd~vV~le~ 204 (352)
T COG4148 153 DEPLASLDLPRKREILPYLERLRDEINIPILY---VSHSLDEVLRLADRVVVLEN 204 (352)
T ss_pred cCchhhcccchhhHHHHHHHHHHHhcCCCEEE---EecCHHHHHhhhheEEEecC
Confidence 99999999999888776544 557889 7788899998 99998864
No 169
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=1.4e-22 Score=155.66 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=90.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+|+.+|+.+..... ...... ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++|||
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 173 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREA--ARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLL 173 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 35778899999998642111 111111 34577889999999764 5789999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh--cCceEEec
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI--RNEVCLIS 136 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~--~~~~~~~~ 136 (137)
||||+|||+.++..+.+.+. +.||++ .+||...+. .|+++.+.
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~---vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 174 DEPTASLDAANRQVVVELIAEAKARGAALIG---IFHDEEVRELVADRVMDVT 223 (224)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcceeEecC
Confidence 99999999999998888544 679999 555566554 38888764
No 170
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=1e-22 Score=173.85 Aligned_cols=116 Identities=18% Similarity=0.324 Sum_probs=94.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----HKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
.+++.+|+.+|+.++.... ..... ..+++.++++.+|+.. ..++++.+||||||||++|||||+.+|++
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l 448 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDEL--ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI 448 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHH--HHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4677899999998642111 01111 3356788999999975 57899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vsHd~~~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFII---VSHDMDFVLDVCDRAALMRD 503 (520)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999988652 679999 7777777766 99998864
No 171
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=5.1e-23 Score=171.37 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=104.5
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
-|+.++.|.|||.+.+.-+...+.. ..+..+ ..+++.+.|+++|++. ..+++|+++|||||||++||||++.+|++
T Consensus 371 DPygSLsPRmtV~qII~EGL~vh~~-~ls~~e--R~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~ 447 (534)
T COG4172 371 DPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAE--RDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL 447 (534)
T ss_pred CCCCCCCcccCHHHHhhhhhhhcCC-CCCHHH--HHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE
Confidence 4788999999999999987544422 223334 6678999999999975 57999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++||||||+||...+.++++.++ +.+-++ ..||+..+.. ++|+++.+
T Consensus 448 i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLF---ISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 448 ILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF---ISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred EEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEE---EeccHHHHHHhhceEEEEeC
Confidence 99999999999999999999766 557777 7899999888 99998754
No 172
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=8.5e-23 Score=173.44 Aligned_cols=120 Identities=20% Similarity=0.316 Sum_probs=93.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHH-hhhhcchhHHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLA-AMFNQSQAGSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~-~~~~~~~~~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+++.+|+.+|+.++....... ...... ..+++.++++.+|+.... ++++++||||||||++|||||+.+|++|||
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 88 TLVPELSVAENIFLGNEITLPGGRMAYNA--MYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred ccCCCCcHHHHHHhhccccccccccCHHH--HHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 4677899999998763221000 000111 345788899999998764 677999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii---itHd~~~~~~~~d~i~~l~~ 216 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVY---ISHKLNEVKAVCDTICVIRD 216 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCcHHHHHHhCCEEEEEeC
Confidence 99999999999999988643 569999 6677777765 99998864
No 173
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=9.4e-23 Score=173.19 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++++|+.+|+.++.................+++.++++.+++.. ..+++++.||||||||++|||||+.+|++||||
T Consensus 349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 428 (500)
T TIGR02633 349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428 (500)
T ss_pred CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 4788899999998753110100000001113456888999999974 679999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 429 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii---vsHd~~~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIV---VSSELAEVLGLSDRVLVIGE 478 (500)
T ss_pred CCCCCcCHhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998876432 679999 7788888776 99998854
No 174
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=1.3e-22 Score=158.84 Aligned_cols=116 Identities=18% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc-------CC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-------NP 85 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~-------~P 85 (137)
.+++.+|+++|+.++.... . .... ..+++.++++.+|+....++++..||||||||++|||||+. +|
T Consensus 79 ~~~~~~tv~~nl~~~~~~~---~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 79 TPPFAMPVFQYLTLHQPDK---T-RTEA--VASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCCCccHHHHHHhcCccC---C-CcHH--HHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 4566789999998753111 0 1111 34577889999999988899999999999999999999998 67
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++|||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~---~sH~~~~~~~~~d~i~~l~~ 208 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM---SSHDLNHTLRHADRVWLLKQ 208 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999998888543 679999 6666666555 88888753
No 175
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.9e-23 Score=162.94 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
..|+.+|+.++.... ...... ..+++.++++.+++. +..++++..||||||||++|||||+.+|++|||||||+
T Consensus 105 ~~tv~enl~~~~~~~---~~~~~~--~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~ 179 (289)
T PRK13645 105 QETIEKDIAFGPVNL---GENKQE--AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179 (289)
T ss_pred hhHHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 369999998653211 101111 345677899999994 67899999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 96 PLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 96 gLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 180 GLDPKGEEDFINLFERLNKEYKKRIIM---VTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 999999998877432 679999 5556665544 88888753
No 176
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=1.4e-22 Score=153.33 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=87.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++.... .. ..+++.++++.+|+.+..++++.+||||||||++||||++.+|+++|||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 152 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIH-------GG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD 152 (198)
T ss_pred cccccCCcHHHHHHHHHHHc-------CC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34567799999998643111 11 2345778999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~ 126 (137)
|||+|||+.++..+++.+. +.||+++||...++.+
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 9999999999998887544 6799998888776665
No 177
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=158.75 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=92.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
+.+++.+|+++|+.++.... ....... ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLN--GVRNKKD--LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDV 169 (258)
T ss_pred cccCCCCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 34677899999998753211 1001111 345678899999984 456889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||||+|||+.++..+++.+. +.||++ .+||+..+.. |+++++.
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii---vsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 170 LLMDEPCSALDPISTLAIEDLINELKQDYTIVI---VTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEe
Confidence 99999999999999998888554 568999 6667776654 8998874
No 178
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-22 Score=157.75 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=91.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++.+|+.+|+.++.... ......+ ..+++.++++.+|+.. ..++.+.+||||||||++|||||+.+|++|
T Consensus 95 ~~~~~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLN--GRVNRSE--ADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred CCCCcCcHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 4677799999998653221 0001111 3456788999999853 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+|++.++.. |+++++.+
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELKEKYTIII---VTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEE---EECCHHHHHhhCCEEEEEEC
Confidence 9999999999999998888554 568899 6667776655 88888753
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=1.8e-22 Score=158.27 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=92.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
+++.+|+.+|+.++..... ...........+++.++++.+|+.+..++++..||||||||++|||||+.+|+++|||||
T Consensus 86 ~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 86 TAVPLTVRDVVALGRIPHR-SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred cCCCCCHHHHHHhcchhhh-hhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 5667899999987531110 000000111335688899999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|+|||+.++..+.+.+. +.||++ .+||+..+.. |++++|++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVA---ALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEeC
Confidence 99999999998887543 679999 5556666544 88888864
No 180
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.9e-22 Score=153.84 Aligned_cols=112 Identities=25% Similarity=0.261 Sum_probs=88.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+..... .. ..+++.++++.+|+....++++++||||||||++|||||+.+|++||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFL-------GG--EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhc-------CC--cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44567899999997643111 11 1245788999999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
|||+|||+.++..+++.+. +.+|+++||..+.+. .+++|-+
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~---~~~~~~~ 198 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP---GARELDL 198 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc---cCcEEee
Confidence 9999999999998887554 679999655555444 3777654
No 181
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=159.19 Aligned_cols=117 Identities=22% Similarity=0.229 Sum_probs=89.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++..... ...... ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 104 ~~~~-~tv~~nl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 104 TPFP-MSIYDNIAFGVRLFE--KLSRAE--MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred ccCc-CcHHHHHhhhHhhcC--CCCHHH--HHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 3455 899999987532110 111111 345678899999974 4578899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELKQDYTVVI---VTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999998887554 568999 5556665544 88888753
No 182
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=173.06 Aligned_cols=120 Identities=16% Similarity=0.283 Sum_probs=94.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHH-h--hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLA-A--MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~-~--~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++.+|+.+|+.++....... . ..... .++++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 341 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 341 GIIPVHSVADNINISARRHHLRAGCLINNRW--EAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCcCCCCHHHHhccccchhhcccccccChHH--HHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence 3788899999998653211000 0 00011 235678899999994 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. |.+|++ .+||+.++.. |+++++.+
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii---vsHd~~~~~~~~d~i~~l~~ 471 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF---VSSDLPEVLGVADRIVVMRE 471 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999987542 679999 7888888876 99988853
No 183
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-22 Score=159.85 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=91.2
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
+++..|+.+|+.++.... ...... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 95 ~~~~~~v~~~~~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 95 QFVGSIVKYDVAFGLENH---AVPYDE--MHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred hcccccHHHHHHhhHHhc---CCCHHH--HHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 466788999987653211 001111 345678899999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+|||+.++..+++.+. +.||+++||....+.. .|++++|++
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~--~d~i~~l~~ 217 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME--ADHVIVMNK 217 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc--CCEEEEEEC
Confidence 99999999998877543 5799996665554432 489988864
No 184
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=1.3e-22 Score=173.23 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+................ ..+++.++++.+|+. ...++++.+||||||||+.|||||+.+|++||||
T Consensus 351 ~l~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD 428 (510)
T PRK15439 351 GLYLDAPLAWNVCALTHNRRGFWIKPAR--ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428 (510)
T ss_pred CccCCCcHHHHHHhhhhhhhccccChHH--HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence 4677889999986431100000000011 334678899999997 7889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 429 EPt~gLD~~~~~~l~~~l~~l~~~g~tiIi---vsHd~~~i~~~~d~i~~l~~ 478 (510)
T PRK15439 429 EPTRGVDVSARNDIYQLIRSIAAQNVAVLF---ISSDLEEIEQMADRVLVMHQ 478 (510)
T ss_pred CCCcCcChhHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888643 679999 6677777665 99998864
No 185
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=157.57 Aligned_cols=117 Identities=24% Similarity=0.241 Sum_probs=89.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++..... ...... ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 94 ~~~~-~tv~~nl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14245 94 NPFP-KSIFENVAYGLRVNG--VKDNAF--IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVL 168 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHH--HHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3454 699999987532210 000011 3456788999999853 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 169 LMDEPASALDPISTAKVEELIHELKKDYTIVI---VTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999888654 568999 6666666655 89988853
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=172.52 Aligned_cols=120 Identities=13% Similarity=0.238 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHH--h-hhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLA--A-MFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~--~-~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++.+|+.+|+.++....... . ..... ..+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|
T Consensus 340 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 340 GLVLGMSVKENMSLTALRYFSRAGGSLKHAD--EQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCcCCCcHHHHhhhhhhhhhcccccccCHHH--HHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 4678899999998653111000 0 00111 345688899999995 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii---vtHd~~~~~~~~d~v~~l~~ 470 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL---VSSEMPEVLGMSDRILVMHE 470 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEE---EcCCHHHHHhhCCEEEEEEC
Confidence 9999999999999998888554 569999 6778888776 99998864
No 187
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=157.12 Aligned_cols=118 Identities=23% Similarity=0.274 Sum_probs=90.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++........ .... ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 89 ~l~~-~tv~eni~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 164 (246)
T PRK14269 89 NVFV-KSIYENISYAPKLHGMIK-NKDE--EEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL 164 (246)
T ss_pred cccc-ccHHHHhhhHHhhcCccc-ChHH--HHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555 799999987532211000 0011 345678899999995 4467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+|++..+.. |++++|.+
T Consensus 165 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 165 LLDEPTSALDPISSGVIEELLKELSHNLSMIM---VTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHhhCcEEEEEEC
Confidence 9999999999999998888654 679999 5666666554 88888763
No 188
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=159.03 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=90.0
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++...+.. ...... ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGL-ARSKAE--LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred CCCC-CcHHHHHHHHHHhccc-ccchHH--HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4555 5999999875422110 001111 3456788999999964 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii---vtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQNYTIVI---VTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE---EEcCHHHHHhhCCEEEEEEC
Confidence 9999999999999998888654 568999 5666666655 88888763
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.88 E-value=2e-22 Score=156.54 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=91.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+...... ..... ..+.+.++++.+++....++.+.+||+||+||++|||||+.+|+++|||
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRK---HPKAK--IKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcC---CCHHH--HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 456778999999986532111 01111 3356788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+++.+. +.||+++|| +..++.. |++++|.
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH---~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH---DQEEAMEVADRIVVMS 205 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHhhcCEEEEEE
Confidence 9999999999998888554 579999555 5555444 7888775
No 190
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.88 E-value=1.7e-22 Score=159.68 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=90.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++.+|+.+++.+...... ...... ..+++.++++.+|+. ...++++.+||||||||++||+||+.+|++|||||
T Consensus 100 ~~~~~tv~~~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 100 LNPRQRISQILDFPLRLNT--DLEPEQ--REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred cCcchhHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4567789999876432110 011111 345678899999994 67788999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+|++..+.. |++++|++
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii---vsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQEKQGISYIY---VTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 999999999998877443 668999 5556666554 89988864
No 191
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.4e-22 Score=193.67 Aligned_cols=118 Identities=17% Similarity=0.288 Sum_probs=98.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||+||+.++...+. ....+ .++++.++++.+||.+..++++++||||||||++||+||+.+|++||||
T Consensus 1012 ~~L~~~LTV~E~L~f~~~lkg---~~~~~--~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1012 NILFHHLTVAEHILFYAQLKG---RSWEE--AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred CcCCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 357888999999998643321 11112 4567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.+++.+++.++ |.+|++ +||++.+|.. ||+++|++
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~~g~TIIl---tTHdmdea~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYRSGRTIIM---STHHMDEADLLGDRIAIISQ 1135 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999888654 668999 7788888865 99999864
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.8e-22 Score=156.66 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++. |+++|+.++..... . ........+.+.++++.+|+.+ ..++.+..||||||||++|||||+.+|++|
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHG--L-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ccccC-CHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 35554 99999986532110 0 0001113456778999999964 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|++
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQELKKNFTIIV---VTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHhhcCEEEEEEC
Confidence 9999999999999998888654 679999 5566666544 88888864
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2.9e-22 Score=157.45 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=89.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++.+|+.+++.+.... . .. ....+.++++.+|+.+..++++++||||||||++||+||+.+|+++|||||
T Consensus 72 ~~~~~tv~e~l~~~~~~----~---~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 72 ADYEGTVRDLLSSITKD----F---YT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred CCCCCCHHHHHHHHhhh----c---cc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 35678999998653210 0 01 123456789999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|++||+.++..+++.+. +.+|++ .+||+..+.. |+++++.
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiii---vsHd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFV---VEHDIIMIDYLADRLIVFE 190 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEc
Confidence 99999999998877432 679999 7777777665 8998875
No 194
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=156.01 Aligned_cols=111 Identities=29% Similarity=0.364 Sum_probs=87.8
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++ .|+.+|+.++.... .. ...++.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 88 ~~~-~tv~e~l~~~~~~~-------~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 88 LFE-GTVKDNIEYGPMLK-------GE--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred hch-hhHHHHHhcchhhc-------Cc--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 443 69999987643111 11 234677899999996 57789999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~---~sH~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIW---ITHNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeccHHHHHHhCCEEEEEeC
Confidence 999999999998877442 679999 5666666544 88888753
No 195
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.6e-22 Score=155.78 Aligned_cols=117 Identities=23% Similarity=0.246 Sum_probs=89.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ +|+++|+.++..... ...... ..+++.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 94 ~~~~-~t~~~ni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14240 94 NPFP-MSIYDNVAYGPRTHG--IKDKKK--LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVL 168 (250)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCCHHH--HHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555 899999987532110 000111 345677889998874 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---~sH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14240 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVI---VTHNMQQASRISDKTAFFLN 220 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EEeCHHHHHhhCCEEEEEEC
Confidence 9999999999999998887554 569999 5666665554 88888864
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=2e-22 Score=172.44 Aligned_cols=117 Identities=22% Similarity=0.356 Sum_probs=91.9
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+++.+|+.+++.+...... ...... ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 105 LNPLHTLEKQLYEVLSLHR--GMRREA--ARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred cCchhhHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4566788888875421110 111112 4567889999999975 35889999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.||++ .|||+.++.. |+|++|.+
T Consensus 181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~dri~~l~~ 232 (529)
T PRK15134 181 DEPTTALDVSVQAQILQLLRELQQELNMGLLF---ITHNLSIVRKLADRVAVMQN 232 (529)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE---EcCcHHHHHHhcCEEEEEEC
Confidence 99999999999998887543 679999 7777777765 99998864
No 197
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.4e-22 Score=155.93 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... .. . ......+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 96 ~~~~-~tv~enl~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 96 NPFP-MSIYENVVYGLRLK--GI-K-DKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred ccCc-CcHHHHHHHHHHHc--CC-C-cHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3454 89999998753211 10 0 0111345677889999874 3568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLL---VTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHhhCCeEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888654 568999 6666666554 89988753
No 198
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=4.2e-22 Score=153.62 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=88.6
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP 96 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg 96 (137)
.+|+.+|+.++..... ...........+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 65 ~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~ 143 (223)
T TIGR03771 65 PISVAHTVMSGRTGHI-GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTG 143 (223)
T ss_pred CccHHHHHHhcccccc-ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 4799999986531110 000000101335678899999999888999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEe
Q psy317 97 LHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 97 LD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~ 135 (137)
||+.++..+++.+. +.||++ .+||+.++.. |+++++
T Consensus 144 LD~~~~~~l~~~l~~~~~~~~tvii---~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 144 LDMPTQELLTELFIELAGAGTAILM---TTHDLAQAMATCDRVVLL 186 (223)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEE
Confidence 99999998888654 569999 5666666554 888876
No 199
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.88 E-value=2.5e-22 Score=155.35 Aligned_cols=119 Identities=20% Similarity=0.294 Sum_probs=84.5
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+...|+.+|+.++......... ........+.++++.+ ++....++++.+||||||||++|||||+.+|++|||||
T Consensus 87 ~~~~tv~~nl~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 164 (237)
T cd03252 87 LFNRSIRDNIALADPGMSMERV--IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE 164 (237)
T ss_pred hccchHHHHhhccCCCCCHHHH--HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3457999999864311000000 0000111234556666 66667788999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.+|+++||..+.+.. .|++++|.+
T Consensus 165 P~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~--~d~v~~l~~ 211 (237)
T cd03252 165 ATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN--ADRIIVMEK 211 (237)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence 999999999998888654 5799996665555431 388888864
No 200
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.88 E-value=4.4e-22 Score=156.22 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++.+|+.+|+.+...... ...... ...++.++++.+++.. ..++.+.+||||||||++|||||+.+|++|||||
T Consensus 102 ~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 102 LRMQVSAGGNIGERLMAVG--ARHYGD--IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cCccccHHHHHHHHHHHhc--cCcHHH--HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4566789999865321110 000011 3456788999999974 6789999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.+|++ .+||+.++.. |+++++.+
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~---isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVI---VTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 999999999998888532 679999 6677777754 88888754
No 201
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-22 Score=156.43 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=90.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ +|+.+|+.++..... ...... ..+++.++++.+|+. +..++++..||||||||++|||||+.+|++|
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 98 NPFP-MSIYENVAYGVRISA--KLPQAD--LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred ccCC-ccHHHHHHHHHHHhc--CCCHHH--HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3455 899999987532110 001111 345677889999884 4678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.||++ .+|++.++.. |++++|.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSLRSELTIAI---VTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCeEEEEe
Confidence 9999999999999998888554 468999 6677777765 9999885
No 202
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.88 E-value=2.4e-22 Score=175.30 Aligned_cols=125 Identities=24% Similarity=0.328 Sum_probs=96.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC------CCCHHHHHHHHHHHHHhcC
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS------NLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~------~LSgGqkqrv~IArAL~~~ 84 (137)
++.+++.+||+||+.++..++........+ ..++++++++.+|+.+..|++++ .||||||||++||++|+.+
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKE--KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 345788999999999875433211111122 45678999999999998888876 4999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|++++|||||+|||+.++..+++.++ |.||++++|....--.-.-|++++|++
T Consensus 185 p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 99999999999999999999988554 679999655543211223388888864
No 203
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=3e-22 Score=176.09 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=94.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----ccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----TMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
+.+++.+||+||+.+....+........+ ..++++++++.+||.+..+ +.++.||||||||++||++|+.+|+
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQE--KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 45778899999999864322111111112 3457889999999987664 4567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||||||+|||+.++..+++.++ |.||++++|..+.--...-|++++|++
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~ 282 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE 282 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC
Confidence 999999999999999999888654 679999666665322233488888764
No 204
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.1e-22 Score=157.81 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... ... .. ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 104 ~l~~-~tv~enl~~~~~~~---~~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 176 (269)
T PRK14259 104 NPFP-KSIYENIAFGARIN---GYT-GD--MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVI 176 (269)
T ss_pred ccch-hhHHHHHhhhhhhc---CCc-HH--HHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3455 59999998754221 110 11 234567788888763 4578899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.
T Consensus 177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVI---VTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEe
Confidence 9999999999999998888654 568999 6667777765 8998885
No 205
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.7e-22 Score=154.90 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=88.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ +|+++|+.++..... ...... ..+++.++++.+|+. +..++++..||||||||++|||||+.+|++|
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 169 (251)
T PRK14270 95 NPFP-MSIYDNVAYGPRIHG--IKDKKE--LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVI 169 (251)
T ss_pred CcCC-CcHHHHHHhHHHhcC--CCcHHH--HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3454 899999986532210 000111 345677899999874 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.+
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~~~~tiii---vsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVI---VTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE---EEcCHHHHHHhcCEEEEEEC
Confidence 9999999999999998888554 568999 5556665544 88888754
No 206
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.88 E-value=5.8e-22 Score=152.90 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++ .|+++|+.+..... .. .. ..+++.++++.+|+. ...++++.+|||||+||++|||||+.+|+++||||
T Consensus 92 l~~-~tv~enl~~~~~~~--~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 92 LFG-DTVYDNLIFPWQIR--NQ---QP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred ccc-ccHHHHHHhHHhhc--CC---Ch--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444 69999998653211 10 11 234677899999996 47799999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEec
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
||+|||+.++..+.+.+. +.+|+++||..+.+. ..|++++|.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~--~~d~i~~l~ 211 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN--HADKVITLQ 211 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH--hCCEEEEEe
Confidence 999999999998876322 679999666665553 249999884
No 207
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=159.11 Aligned_cols=116 Identities=15% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+|+.+||.+.+.|...++. ++..+ ..+++..||+++++..+..+++.+||.|++|++.+-.|++|+|+++||||
T Consensus 82 GLy~k~tv~dql~yla~LkG---m~~~e--~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKG---MPKAE--IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred ccCccCcHHHHHHHHHHhcC---CcHHH--HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 58999999999998765542 23334 67789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||||.+.+.+.+. ..|+||++ -+|.|+.+-+ |++|+|.
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIif---SsH~Me~vEeLCD~llmL~ 204 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIF---SSHRMEHVEELCDRLLMLK 204 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEE---ecchHHHHHHHhhhhheec
Confidence 9999999999876664 33889999 5566666666 8888874
No 208
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.4e-22 Score=154.60 Aligned_cols=116 Identities=23% Similarity=0.266 Sum_probs=88.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++..... ...... ..+++.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 95 NPFP-KSIFDNVAFGPRMLG--TTAQSR--LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred ccCc-CcHHHHHhhHHHhcC--CChhhH--HHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3555 599999987542210 000111 334567788888874 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tili---vsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQELKQNYTIAI---VTHNMQQAARASDWTGFLL 220 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhCCEEEEEe
Confidence 9999999999999998877554 579999 6666666665 8888875
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.2e-22 Score=154.42 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=89.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++..... ...... ..+.+.++++.+|+.. ..++++.+||||||||++|||||+.+|++|
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ll 168 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHG--VKSKHK--LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVI 168 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHH--HHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 3454 899999987532110 000011 3445778899999853 468899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili---~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 169 LLDEPTSALDPIATQRIEKLLEELSENYTIVI---VTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHhcCcEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888554 569999 5566665544 89988764
No 210
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=2.6e-22 Score=154.29 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=86.9
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
..|+++|+.++............. ....+.++++.+ |+....++++.+||||||||++|||||+.+|++|||||||
T Consensus 101 ~~tv~~nl~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 178 (226)
T cd03248 101 ARSLQDNIAYGLQSCSFECVKEAA--QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178 (226)
T ss_pred hhhHHHHhccccCCCCHHHHHHHH--HHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 369999997653211000000000 112356788888 8888889999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 95 SPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.||+++||....+. . .|++++|.+
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~-~d~i~~l~~ 223 (226)
T cd03248 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-R-ADQILVLDG 223 (226)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-h-CCEEEEecC
Confidence 9999999998888654 458999666655552 2 499998864
No 211
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.4e-22 Score=153.10 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.++ ..|+++|+.++............. ....+.++++.+ ++....++++.+||||||||++|||||+.+|+++||
T Consensus 86 ~~~-~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 86 FLF-NDTVAENIAYGRPGATREEVEEAA--RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred eec-cccHHHHhhccCCCCCHHHHHHHH--HHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344 479999998753211000000000 111345667766 677778889999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.+|+++||..+.+.. .|++++|.+
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l~~ 211 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVLED 211 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEecC
Confidence 99999999999998888654 6699996666666543 489988853
No 212
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.6e-22 Score=153.95 Aligned_cols=119 Identities=24% Similarity=0.240 Sum_probs=88.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
+.+++.+|+.+|+.++.... ....... ..+.+.+.++.+++. +..++++++||||||||++|||||+.+|++
T Consensus 94 ~~~~~~~t~~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 94 PNPFPTMSVFDNVVAGLKLA--GIRDRDH--LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred CccCcCCCHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 35677799999998653211 0000111 334566777777753 456888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||||+|||+.++..+++.++ +.||+++ +|+..++.. |++++|.+
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~---sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV---THNMHQAARVSDTTSFFLV 222 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE---eCCHHHHHHhCCEEEEEEC
Confidence 99999999999999998888554 5789994 555555544 88888754
No 213
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.87 E-value=8e-22 Score=154.05 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++..|+.+|+.+......... ... ....+.++++.+|+. ...++.+..||||||||++|||||+.+|++|||||
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE 174 (253)
T TIGR02323 99 LRMRVSAGANIGERLMAIGARH--YGN--IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174 (253)
T ss_pred cCccccHHHHHHHHHHHhcccc--hHH--HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455688888864321100000 011 345678899999997 47899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.+++.+++.+. +.+|++ .+|++..+.. |++++|.+
T Consensus 175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~---vsH~~~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVII---VTHDLGVARLLAQRLLVMQQ 224 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhcCEEEEEEC
Confidence 999999999998877432 679999 5566666654 88887753
No 214
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.6e-22 Score=156.13 Aligned_cols=116 Identities=23% Similarity=0.273 Sum_probs=87.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++..... ...... ..+.+.+.++.+++. ...++++++||||||||++|||||+.+|++|
T Consensus 112 ~~~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 186 (268)
T PRK14248 112 NPFP-KSIYNNITHALKYAG--ERRKSV--LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186 (268)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEE
Confidence 3455 599999987532110 000011 234567788988884 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.
T Consensus 187 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~v~~l~ 237 (268)
T PRK14248 187 LLDEPASALDPISNAKIEELITELKEEYSIII---VTHNMQQALRVSDRTAFFL 237 (268)
T ss_pred EEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE---EEeCHHHHHHhCCEEEEEE
Confidence 9999999999999998888554 568999 6666666554 8888875
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.4e-22 Score=155.22 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=92.7
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
.+.+++.+|+++|+.++.... ......+ ..+++.++++.+|+. +..++++..||+|||||++|||||+.+|+
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~--~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSH--GIKEKRE--IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhc--CCCCHHH--HHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 345677899999998753211 0100111 345678899999996 35678999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++||||||+|||+.++..+.+.+. +.||++ .+|+...+.. +++++|.+
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiil---vsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI---VSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999999999998888654 469999 6666666654 88888753
No 216
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.6e-22 Score=157.74 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=89.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++.... ....... ..+++.++++.+|+. +..++++..||||||||++|||||+.+|++|
T Consensus 130 ~l~~-~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLH--GINDKKQ--LEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred CCCc-cCHHHHHHhHHHhc--CCCcHHH--HHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3555 59999998753211 0000011 345677889998873 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi---vsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELRGSYTIMI---VTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888654 458999 6667777655 99988864
No 217
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.6e-22 Score=154.01 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.++ ..|+++|+.++.... ....... ..+++.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 95 ~~~-~~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~ll 169 (251)
T PRK14251 95 TPF-PFSVYDNVAYGLKIA--GVKDKEL--IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVV 169 (251)
T ss_pred ccC-CCcHHHHHHHHHHHc--CCCCHHH--HHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 345 479999998653211 0000011 234677889999984 4468889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+..+.. |++++|.+
T Consensus 170 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii---isH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIM---VTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred EecCCCccCCHHHHHHHHHHHHHHHcCCeEEE---EECCHHHHHhhcCEEEEEEC
Confidence 9999999999999998888654 569999 5556665544 88888753
No 218
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=4.2e-22 Score=190.50 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=97.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|++|++.+...++. .+..+ .+++++++++.+||.+..++++++||||||||++||+||+.+|++||||
T Consensus 2021 ~~L~~~LTv~E~L~l~a~l~g---~~~~~--~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2021 DAIDDLLTGREHLYLYARLRG---VPAEE--IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred ccCCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 457888999999987543321 11112 4457788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.+++.+++.+. |.+|++ +||++.++.. ||++++.+
T Consensus 2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIIL---tTH~mee~e~lcDrV~IL~~ 2145 (2272)
T TIGR01257 2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVL---TSHSMEECEALCTRLAIMVK 2145 (2272)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999888543 679999 7778887766 99998854
No 219
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=154.35 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=89.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++..... ..+..+ ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vl 172 (261)
T PRK14258 98 NLFP-MSVYDNVAYGVKIVG--WRPKLE--IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVL 172 (261)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCcHHH--HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555 899999986532110 001111 2356788999998753 468889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |+++++.+
T Consensus 173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii---vsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI---VSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhcCEEEEEcc
Confidence 9999999999999998877543 679999 6677776665 89988864
No 220
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.87 E-value=1.1e-21 Score=153.91 Aligned_cols=113 Identities=21% Similarity=0.305 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+.+|+.+++.+..... .. .. ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 93 ~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 93 NPLHTMHTHARETCLAL---GK--PA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred CccccHHHHHHHHHHHc---CC--Ch--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34568888876432111 00 11 2356788999999986 468899999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.+|++ .+|++.++.. |++++|.+
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~---~sH~~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLL---VTHDMGVVARLADDVAVMSH 216 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999988877433 579999 5666666544 88888753
No 221
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=152.86 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++.... ... ......+++.+.++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 93 ~~~~-~tv~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (249)
T PRK14253 93 NPFP-MSIYENVAYGLRAQ---GIK-DKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVI 167 (249)
T ss_pred CcCc-ccHHHHHHhHHHhc---CCC-chHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4455 89999998653211 000 0111345677788888874 3567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+|++.++.. |++++|.+
T Consensus 168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~---~sh~~~~~~~~~d~i~~l~~ 219 (249)
T PRK14253 168 LMDEPTSALDPIATHKIEELMEELKKNYTIVI---VTHSMQQARRISDRTAFFLM 219 (249)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999998887554 568999 5666666555 89888864
No 222
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=3.7e-22 Score=166.26 Aligned_cols=120 Identities=22% Similarity=0.325 Sum_probs=98.8
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc---ccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE---HKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~---~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
|+.++-|-.|+...+.-...++. ...+.. .++++.++|+.+||.+ ..+.+|++|||||||||+||+||+.+|+
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~--Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHR--GLSRAA--ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHh--cccHHH--HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence 56667777777777665543332 222223 6778999999999965 4588999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+||.||||++||...+.+|++.++ |-.+++ .|||+..+.+ |+||++.
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf---ITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILF---ITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE---EeccHHHHHHhhhhEEEEe
Confidence 999999999999999999999766 458888 8999999998 9999974
No 223
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=154.11 Aligned_cols=116 Identities=24% Similarity=0.327 Sum_probs=87.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... ......+ ..+++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 103 ~~~~-~tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~ll 177 (259)
T PRK14274 103 NPFP-QSIFDNVAYGPRIH--GTKNKKK--LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177 (259)
T ss_pred cccc-cCHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555 49999998653211 0000011 3456778899999853 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+..+.. |++++|.
T Consensus 178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~ 228 (259)
T PRK14274 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVI---VTHNMQQAARVSDQTAFFY 228 (259)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhCCEEEEEE
Confidence 9999999999999998888554 568999 5555555544 8888875
No 224
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=9.1e-22 Score=171.22 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++++||.+|+.++.. .. . ....+.++++.+|+.+..++++.+|||||||||+||+||+.+|++|||||
T Consensus 410 ~~~~~~tv~e~l~~~~~-----~~---~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 410 KPDYDGTVEDLLRSITD-----DL---G--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred cCCCCCcHHHHHHHHhh-----hc---C--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34678999999976421 10 1 12356789999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.++ +.+|++ .+||+.++.. |+++++.+
T Consensus 480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvii---vsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALV---VDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEcC
Confidence 999999999998888543 679999 7888888776 99998863
No 225
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.87 E-value=1.8e-21 Score=151.81 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=89.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHH-hhhh-cchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLA-AMFN-QSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~-~~~~-~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~i 87 (137)
+.+++.+|+.+++.+........ .... ......+++.++++.+|+. ...++++. .||||||||++|||||+.+|++
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 93 PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 34667789999987643211000 0000 0001235678899999997 46788887 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|||||||+|||+.++..+++.+. +.||+++||..+.+.....|++++|.
T Consensus 173 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~ 226 (252)
T CHL00131 173 AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ 226 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe
Confidence 99999999999999998887543 67999955554444332248888775
No 226
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=9.2e-22 Score=169.09 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+++|+.+..... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 95 ~l~~~lTV~EnL~l~~~~~---~~~~~e--~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMM---GLTKEK--IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred ccCCCCcHHHHHHhhhhhc---CCCHHH--HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4567789999998643211 111112 34567789999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. |.+|++ .+||+.++.. |++++|.+
T Consensus 170 PTsgLD~~sr~~LlelL~el~~~G~TIII---VSHdl~~i~~l~DrIivL~~ 218 (549)
T PRK13545 170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFF---ISHSLSQVKSFCTKALWLHY 218 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999998888653 679999 5666666655 88888753
No 227
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-21 Score=152.57 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=87.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... .. . ......+++.+.++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 96 ~~~~-~tv~~nl~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 170 (252)
T PRK14255 96 NPFP-FSIYENVIYGLRLA--GV-K-DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVI 170 (252)
T ss_pred ccCC-CcHHHHHHHHHHHc--CC-C-CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4555 79999998753211 00 0 0101234566788888763 4567899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+.+.+. +.||++ .+||+..+.. |++++|.+
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~---vsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14255 171 LLDEPTSALDPISSTQIENMLLELRDQYTIIL---VTHSMHQASRISDKTAFFLT 222 (252)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHhCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999998887554 468999 5556666544 88888753
No 228
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-21 Score=155.93 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh---------c
Q psy317 14 MDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV---------N 83 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~---------~ 83 (137)
+++.+|+.+|+.++...... ......+ ..+++.++++.+|+....++++.+||||||||++|||||+ .
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHR--DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHH--HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 45568999999875321100 0000011 3356788999999998899999999999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|++|||||||+|||+.++..+++.++ +.||++ .+||+..+.. |++++|.+
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii---isH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA---IVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999888543 579999 5556665544 88888864
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=156.11 Aligned_cols=114 Identities=23% Similarity=0.279 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.+...... .. .. ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 130 ~l~~-~tv~enl~~~~~~~~---~~-~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lL 202 (285)
T PRK14254 130 NPFP-KSIYDNVAYGLKIQG---YD-GD--IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVI 202 (285)
T ss_pred ccCc-CCHHHHHHHHHHHcC---Cc-HH--HHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3555 499999986532211 11 11 345678899999985 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceE-Eec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVC-LIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~-~~~ 136 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |+++ ++.
T Consensus 203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii---~tH~~~~i~~~~dri~v~l~ 254 (285)
T PRK14254 203 LMDEPASALDPVATSKIEDLIEELAEEYTVVI---VTHNMQQAARISDKTAVFLT 254 (285)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhhcCEEEEEee
Confidence 9999999999999998888654 458999 5666666654 8865 444
No 230
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=1.1e-21 Score=150.19 Aligned_cols=107 Identities=22% Similarity=0.357 Sum_probs=82.0
Q ss_pred CCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccC-----------CCCCHHHHHHHHHHHHHhcCCC
Q psy317 18 KTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMT-----------SNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 18 lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~-----------~~LSgGqkqrv~IArAL~~~P~ 86 (137)
.|+.+|+.++... . ..+.+.++++.+++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 92 ~tv~e~l~~~~~~---------~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 92 GTLRDNITLGAPL---------A--DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred chHHHHhhcCCCC---------C--CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 6999998764210 1 1234556788888877666544 6999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||||||+|||+.++..+++.+. +.+|+++||..+.+ ...|++++|.+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~--~~~d~v~~l~~ 213 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL--DLVDRIIVMDS 213 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH--HhCCEEEEEeC
Confidence 999999999999999998888665 35899966665543 23489988754
No 231
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=154.13 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.++.... .....+ ....+.++++.+++.+..++++.+|||||+||++||+||+.+|++|||||
T Consensus 95 ~~~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE 169 (264)
T PRK13546 95 GLSGQLTGIENIEFKMLCM---GFKRKE--IKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE 169 (264)
T ss_pred CCCCCCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3556789999998653211 111112 33456778899999998999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||+.++..+++.+. +.+|+++| |++..+.. +++++|.
T Consensus 170 Pt~gLD~~~~~~l~~~L~~~~~~g~tiIiis---H~~~~i~~~~d~i~~l~ 217 (264)
T PRK13546 170 ALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS---HNLGQVRQFCTKIAWIE 217 (264)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEc---CCHHHHHHHcCEEEEEE
Confidence 999999999888887543 67999955 45554433 7887774
No 232
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.8e-21 Score=154.18 Aligned_cols=117 Identities=22% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++. |+++|+.++.... ....... ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus 116 ~l~~~-tv~enl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 190 (272)
T PRK14236 116 NPFPK-SIYENVVYGLRLQ--GINNRRV--LDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVL 190 (272)
T ss_pred ccCcc-cHHHHHHHHHHhc--CCCcHHH--HHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEE
Confidence 45554 9999998653211 0000011 2346778899999853 568889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+|++.++.. |++++|.+
T Consensus 191 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tiii---vtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 191 LLDEPTSALDPISTLKIEELITELKSKYTIVI---VTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE---EeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999998888554 568999 6666666554 88888764
No 233
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-21 Score=166.64 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeee
Q psy317 43 GSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDY 116 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~ 116 (137)
..+++.++++.+++. +..++++.+||||||||++||||++.+|++|||||||+|||+.++..+++.+ .|.||++
T Consensus 367 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~ 446 (491)
T PRK10982 367 MKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446 (491)
T ss_pred HHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 345678899999995 5679999999999999999999999999999999999999999999998755 3779999
Q ss_pred eccccchhhhhhc--CceEEecC
Q psy317 117 TGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
.+||+.++.. |+++++.+
T Consensus 447 ---vsHd~~~~~~~~d~v~~l~~ 466 (491)
T PRK10982 447 ---ISSEMPELLGITDRILVMSN 466 (491)
T ss_pred ---ECCChHHHHhhCCEEEEEEC
Confidence 7777777776 99998853
No 234
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=1.8e-21 Score=147.10 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+|+.+|+.+..... . ..+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE 149 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-------N---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-------c---cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4567799999998643111 1 12356778999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~ 126 (137)
||+|||+.++..+.+.+. +.+|+++||..+.+..
T Consensus 150 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 150 VETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999998887543 6799997776665544
No 235
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.8e-21 Score=158.89 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=89.0
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+...|+++|+.++.... .....+ ...+.+.++++.+++. ...++++.+||||||||++|||||+.+|+||||
T Consensus 174 ~~~~ti~eNi~~~~~~~---~~~~~~-~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNN---GINDRK-ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred cCCCcHHHHHHhHHHhc---CCChHH-HHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 44689999998753211 000011 0233467788888874 356789999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.+...+.+.+. +.||++ .||++.++.. |+++++.+
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~~~Tii~---iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKKKYSIII---VTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998877544 569999 7778887766 99998853
No 236
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=153.31 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... ....... ...++.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 111 ~~~~-~tv~eni~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 185 (267)
T PRK14237 111 NPFA-KSIYENITFALERA--GVKDKKV--LDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDIL 185 (267)
T ss_pred cccc-ccHHHHHHhHHHhc--CCCCHHH--HHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3454 69999998753211 0001111 345678889999985 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+.+.+. +.+|++ .+|++..+.. |++++|.+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFELKKNYTIII---VTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhcCEEEEEEC
Confidence 9999999999999998887544 568999 5666666654 88888753
No 237
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-21 Score=152.77 Aligned_cols=111 Identities=24% Similarity=0.309 Sum_probs=87.8
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+|+++|+.++..... . ... ...++.++++.+++.. ..++++.+|||||+||++|||||+++|++|||||
T Consensus 102 ~~tv~enl~~~~~~~~--~--~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 102 SMSIFDNVAFGLRLNR--Y--KGD--LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cccHHHHHHHHHhhcC--c--hHH--HHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 6999999987642211 0 011 3456788999999854 3467889999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||+.++..+++.+. +.+|++ .+|++..+.. |+++++.
T Consensus 176 PtsgLD~~~~~~l~~~l~~~~~~~tii~---isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 176 PCSALDPIATRRVEELMVELKKDYTIAL---VTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred CCccCCHHHHHHHHHHHHHHhcCCeEEE---EeCCHHHHHHhCCEEEEEe
Confidence 999999999998888554 568889 5666666655 9999884
No 238
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=154.23 Aligned_cols=117 Identities=25% Similarity=0.247 Sum_probs=89.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc----ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE----HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~----~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++..... .....+ ...++.++++.+|+.. ..++.+.+||||||||++|||||+.+|++|
T Consensus 111 ~l~~-~tv~eni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~ll 185 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAHK--LVPRKE--FRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVL 185 (276)
T ss_pred ccCC-ccHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3455 899999987532110 001111 3345678899999864 357889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---vsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVII---VTHNLAQAARISDRAALFFD 237 (276)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888554 468999 6667776655 88888754
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.5e-21 Score=150.23 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=70.9
Q ss_pred HHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccc
Q psy317 49 EILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQ 122 (137)
Q Consensus 49 ~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~ 122 (137)
++++.+ |+....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+. +.+|+++||..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 199 (229)
T cd03254 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS 199 (229)
T ss_pred HHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 444444 56666677889999999999999999999999999999999999999998887554 568999777666
Q ss_pred hhhhhhcCceEEecC
Q psy317 123 NLQQTIRNEVCLISD 137 (137)
Q Consensus 123 ~~~~~~~~~~~~~~~ 137 (137)
++.. .|++++|++
T Consensus 200 ~~~~--~d~i~~l~~ 212 (229)
T cd03254 200 TIKN--ADKILVLDD 212 (229)
T ss_pred HHhh--CCEEEEEeC
Confidence 6532 489988864
No 240
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=151.69 Aligned_cols=117 Identities=23% Similarity=0.250 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++...+. ...... ..+++.++++.+++. ...++++..||||||||++|||||+.+|+++
T Consensus 97 ~~~~-~tv~eni~~~~~~~~--~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14261 97 NPFP-KSIYENVAYGPRIHG--EKNKKT--LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVI 171 (253)
T ss_pred ccCc-ccHHHHHHhhHHhcC--CCCHHH--HHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3555 599999987642211 000011 345677888888874 3468899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+.+.+. +.||++ .+|++.++.. |++++|.+
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii---~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLKKEYTVII---VTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhhCceEEE---EEcCHHHHHhhCCEEEEEEC
Confidence 9999999999999998877554 468999 5666666644 88888754
No 241
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=1e-21 Score=166.52 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG 118 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~ 118 (137)
.+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.+. |.||++
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii-- 190 (490)
T PRK10938 113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL-- 190 (490)
T ss_pred HHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE--
Confidence 3567889999999988999999999999999999999999999999999999999999998888654 569999
Q ss_pred cccchhhhhhc--CceEEecC
Q psy317 119 NRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~~ 137 (137)
.+||+..+.. |++++|.+
T Consensus 191 -~tH~~~~~~~~~d~v~~l~~ 210 (490)
T PRK10938 191 -VLNRFDEIPDFVQFAGVLAD 210 (490)
T ss_pred -EeCCHHHHHhhCCEEEEEEC
Confidence 6677877766 99998864
No 242
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=2.7e-21 Score=146.65 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.++... . . ....+.++++.+++.+..++++..||||||||++||||++.+|++||||
T Consensus 83 ~~~~~~~tv~~~~~~~~~~----~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD 152 (200)
T PRK13540 83 SGINPYLTLRENCLYDIHF----S----P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152 (200)
T ss_pred cccCcCCCHHHHHHHHHhc----C----c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3466789999999865211 0 1 1236778999999988888999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchh
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNL 124 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~ 124 (137)
|||+|||+.++..+++.+. +.+|+++||..+-+
T Consensus 153 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 9999999999998888554 67999966654433
No 243
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.86 E-value=3.7e-21 Score=152.30 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=88.8
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++..|+.+|+.+..... . ...... ...++.++++.+|+. ...++++..||||||||++|||||+.+|++|||||
T Consensus 102 ~~~~~t~~~~l~~~~~~~-~-~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE 177 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL-L-SLDKAE--RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177 (268)
T ss_pred cCCCCCHHHHHHHHHHhh-c-cCCHHH--HHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 556789999986542110 0 000111 334688999999997 57899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||+.++..+.+.+. +.||++ .+|+...+.. |++++|.
T Consensus 178 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii---vsH~~~~i~~~~d~i~~l~ 226 (268)
T PRK10419 178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLF---ITHDLRLVERFCQRVMVMD 226 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCcEEEE---EECCHHHHHHhCCEEEEEE
Confidence 999999999888777443 679999 5566666554 8888775
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.3e-21 Score=149.73 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=84.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.++ ..|+.+|+.++.......... .. .....+.+.++.+ ++....++++..||||||||++|||||+.+|++|||
T Consensus 85 ~~~-~~tv~~nl~~~~~~~~~~~~~-~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llll 161 (236)
T cd03253 85 VLF-NDTIGYNIRYGRPDATDEEVI-EA-AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLL 161 (236)
T ss_pred hhh-cchHHHHHhhcCCCCCHHHHH-HH-HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344 579999998753111000000 00 0001223444544 566667778899999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. +.+|+++||..+.+.. .|++++|.+
T Consensus 162 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l~~ 210 (236)
T cd03253 162 DEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVLKD 210 (236)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEEEC
Confidence 99999999999998877543 6799997777666643 489888864
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-21 Score=152.94 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=87.7
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
+++ .|+.+|+.++..... .. .. ..+.+.+.++.+++. +..++++..||||||||++|||||+.+|++||
T Consensus 112 l~~-~tv~~nl~~~~~~~~---~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll 184 (274)
T PRK14265 112 PFP-KSIYENIAFAPRANG---YK-GN--LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLL 184 (274)
T ss_pred ccc-ccHHHHHHhHHHhcC---ch-HH--HHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 444 599999987532110 00 11 234456678888863 45688999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 90 FDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.
T Consensus 185 LDEPt~~LD~~~~~~l~~~L~~~~~~~tiii---~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 185 MDEPCSALDPISTRQVEELCLELKEQYTIIM---VTHNMQQASRVADWTAFFN 234 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence 999999999999998888655 568999 7777777766 9999884
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=152.09 Aligned_cols=114 Identities=22% Similarity=0.257 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++.... ... .. ..+++.++++.+++. ...++++.+||||||||++|||||+.+|++|
T Consensus 101 ~~~~-~tv~enl~~~~~~~---~~~-~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 173 (264)
T PRK14243 101 NPFP-KSIYDNIAYGARIN---GYK-GD--MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVI 173 (264)
T ss_pred cccc-ccHHHHHHhhhhhc---Ccc-hH--HHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3454 59999998753211 100 11 234566778888874 3567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.||++ .+|++.++.. |+|++|.
T Consensus 174 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~---vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYTIII---VTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEe
Confidence 9999999999999998888654 468999 5666766665 8998885
No 247
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=2e-21 Score=150.46 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=83.7
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
..|+++|+.++......... ........+.++++.+ ++....++++.+||||||||++|||||+.+|++|||||||
T Consensus 90 ~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 90 DGTIAENIRYGKPDATDEEV--EEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred hhhHHHHhhccCCCCCHHHH--HHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 46999999865321100000 0000001233444444 6666678889999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 95 SPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||+.++..+++.+. +.+|+++||..+.+. ..|++++|++
T Consensus 168 ~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~--~~d~v~~l~~ 212 (238)
T cd03249 168 SALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR--NADLIAVLQN 212 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh--hCCEEEEEEC
Confidence 9999999998888653 679999777766664 3499998864
No 248
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-21 Score=153.01 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC----CcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL----QEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL----~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+.+|+.++.... .. . ........+.+.++.+++ .+..++++..||||||||++|||||+.+|++|
T Consensus 115 ~~~~-~tv~eni~~~~~~~--~~-~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~ll 189 (271)
T PRK14238 115 NPFP-KSIYDNVTYGPKIH--GI-K-DKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189 (271)
T ss_pred cccc-ccHHHHHHHHHHhc--CC-C-cHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3454 59999998753211 10 0 011123456677877754 44568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++++|.+
T Consensus 190 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii---vsH~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 190 LMDEPTSALDPISTLKVEELVQELKKDYSIII---VTHNMQQAARISDKTAFFLN 241 (271)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE---EEcCHHHHHHhCCEEEEEEC
Confidence 9999999999999998887544 568999 5666666554 89988864
No 249
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-21 Score=150.19 Aligned_cols=116 Identities=23% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+|+ .|+.+|+.++.... ....... ..+++.++++.+|+. ...++++..||+|||||++|||||+.+|++|
T Consensus 94 ~~~~-~t~~~nl~~~~~~~--~~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 94 NPFP-KSIFDNVAYGLRIH--GEDDEDF--IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred ccCc-chHHHHHHhHHhhc--CCCCHHH--HHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4555 59999998653211 0000111 345778889999884 3468889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEec
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+|||+.++..+++.+. +.||++ .+|++..+.. +++++++
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii---~sh~~~~~~~~~~~i~~l~ 219 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVI---VTHNMQQATRVSKYTSFFL 219 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE---EECCHHHHHhhcCEEEEEE
Confidence 9999999999999998888554 568999 5556655555 7777664
No 250
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=2.8e-21 Score=148.47 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=88.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+|+.+....+. . . ..+....+.+.+++....+++++.||+|||||++||+||+.+|+++|||
T Consensus 58 ~~l~~~ltv~enl~~~~~~~~--~----~--~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD 129 (213)
T PRK15177 58 SFILPGLTGEENARMMASLYG--L----D--GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD 129 (213)
T ss_pred cccCCcCcHHHHHHHHHHHcC--C----C--HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 457888999999987543211 1 1 1112233456678888889999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+++|+.++..+.+.+ .+.++++ .+|++..+.. |++++|.+
T Consensus 130 EP~~~lD~~~~~~~~~~l~~~~~~~~ii~---vsH~~~~~~~~~d~i~~l~~ 178 (213)
T PRK15177 130 GKLYTGDNATQLRMQAALACQLQQKGLIV---LTHNPRLIKEHCHAFGVLLH 178 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhCCcEEE---EECCHHHHHHhcCeeEEEEC
Confidence 999999999998777743 3668889 5666666653 88888753
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=3.4e-21 Score=147.50 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHHHHHhc
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIALELVN 83 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IArAL~~ 83 (137)
+...|+.+|+.+.... ..+++.+.++.+++.+ ..++++..||+|||||++|||||+.
T Consensus 89 l~~~tv~enl~~~~~~------------~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 89 LFSGTIRSNLDPFGEY------------SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred cccchHHHHhCcCCCC------------CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 3346999998643110 0122334444444443 3457899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|+++||||||+|||+.++..+++.+. +.+|+++||..+.+.. .|++++|.+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l~~ 212 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVLDK 212 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEEEC
Confidence 999999999999999999998888655 5689997776666543 389888864
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.85 E-value=3.1e-21 Score=151.80 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeec
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTG 118 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~ 118 (137)
+++.++++.+|+.+..++++..||||||||++||+||+.+|++|||||||+|||+.++..+++.+. +.||++
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii-- 176 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM-- 176 (251)
T ss_pred HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE--
Confidence 456789999999998999999999999999999999999999999999999999999998887542 679999
Q ss_pred cccchhhhhhc--CceEEec
Q psy317 119 NRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~ 136 (137)
.+||+.++.. |+++++.
T Consensus 177 -vsH~~~~i~~~~d~i~~l~ 195 (251)
T PRK09544 177 -VSHDLHLVMAKTDEVLCLN 195 (251)
T ss_pred -EecCHHHHHHhCCEEEEEC
Confidence 6677777655 8888875
No 253
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=4.2e-21 Score=179.71 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=96.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC----CCCHHHHHHHHHHHHHhcCCC-
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS----NLSGGQKKRLSIALELVNNPP- 86 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~----~LSgGqkqrv~IArAL~~~P~- 86 (137)
+.+++.+||+||+.++..++........+ ..++++++++.+|+.+..++.++ .||||||||++||++|+.+|+
T Consensus 845 ~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~--~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~ 922 (1394)
T TIGR00956 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSE--KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL 922 (1394)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence 35688899999999875433111111112 44678999999999999998887 799999999999999999997
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||||||+|||+.++..+++.++ |.||++++|..+..-...-|++++|++
T Consensus 923 iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~ 978 (1394)
T TIGR00956 923 LLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQK 978 (1394)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcC
Confidence 999999999999999998888554 679999666555432233488888863
No 254
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.1e-21 Score=162.61 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
..++.++++.+|+.+.. ++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.+. +.||++ .
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiii---v 208 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII---I 208 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEE---E
Confidence 35678899999997644 57899999999999999999999999999999999999999999988766 679999 6
Q ss_pred cchhhhhhc--CceEEecC
Q psy317 121 TQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~ 137 (137)
+||+..+.. |++++|.+
T Consensus 209 sHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 209 SHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred eCCHHHHHhhcceEEEEeC
Confidence 677776655 88888864
No 255
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=5.4e-21 Score=179.49 Aligned_cols=123 Identities=27% Similarity=0.320 Sum_probs=95.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccC-----CCCCHHHHHHHHHHHHHhcCCC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMT-----SNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~-----~~LSgGqkqrv~IArAL~~~P~ 86 (137)
+.+++.+||+|++.++..++........+ ..++++++++.+||.+..++++ ..||||||||++||++|+.+|+
T Consensus 962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~--~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~ 1039 (1470)
T PLN03140 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEE--KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039 (1470)
T ss_pred cccCCCCcHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC
Confidence 45788899999999875332111111112 3457899999999998888886 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
+|||||||+|||+.++..+++.++ |.||++++|..+..-...-|++++|+
T Consensus 1040 lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1040 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 999999999999999999988654 67999966665522122348888886
No 256
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=6.3e-21 Score=164.53 Aligned_cols=120 Identities=22% Similarity=0.264 Sum_probs=85.4
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL 81 (137)
.|+...+.+-|++||+.++.. .. +.++ ..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~----~~-~~ee--i~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNP----DA-SDEQ--LQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCC----CC-CHHH--HHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 456666677899999998631 00 0001 111 122334443 455455566788999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+++|+|||||||||+||+.+...+.+.+. +.|+++.||+.+-+.. .|+++++.+
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~--aD~Iivl~~ 558 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ--WDQIWVMQD 558 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh--CCEEEEEeC
Confidence 99999999999999999999998887553 6799996666654432 388888754
No 257
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.4e-21 Score=163.45 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++|++||.||+.++........+ -..+...+++.++|+.+|+....+.++++||.||||.|+|||||..++++||||
T Consensus 92 l~L~p~LsVaeNifLgre~~~~~g~-id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD 170 (500)
T COG1129 92 LSLVPNLSVAENIFLGREPTRRFGL-IDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD 170 (500)
T ss_pred hhccCCccHHHHhhcccccccCCCc-cCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4589999999999988654321110 111225678899999999965589999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|+..+.+.+++..+ |.+|+| .+|.|.+... ||+.++.|
T Consensus 171 EPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~---ISHrl~Ei~~i~DritVlRD 220 (500)
T COG1129 171 EPTAALTVKETERLFDLIRRLKAQGVAIIY---ISHRLDEVFEIADRITVLRD 220 (500)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EcCcHHHHHHhcCEEEEEeC
Confidence 9999999999999888544 889999 6667777777 99999876
No 258
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=5.9e-21 Score=164.38 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=90.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++.+|+.+|+.++.... ... . ...++.++++.+|+.. ..++++++||||||||++|||||+.+|++|||||
T Consensus 397 ~~~~~tv~e~l~~~~~~~---~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDII---QLG--K--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred cCCCCcHHHHHHhhcccc---ccC--c--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 677899999998753211 000 1 1224557899999974 5799999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhhc--CceEEec
Q psy317 93 PTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||+.++..+++.+.. .+|++ .+||+.++.. |++++|.
T Consensus 470 Pt~~LD~~~~~~l~~~l~~~~~~vii---vsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 470 PTNDLDVETLRALEEALLEFAGCAVV---ISHDRWFLDRIATHILAFE 514 (552)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEE---EeCCHHHHHHhCCEEEEEE
Confidence 9999999999999987663 48888 6667776655 8988875
No 259
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=150.80 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG 118 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~ 118 (137)
.+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+. |.+|++
T Consensus 120 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii-- 197 (272)
T PRK15056 120 RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV-- 197 (272)
T ss_pred HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE--
Confidence 4467789999999988999999999999999999999999999999999999999999998888553 679999
Q ss_pred cccchhhhhhc--CceEEe
Q psy317 119 NRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~ 135 (137)
.+||+.++.. |+++++
T Consensus 198 -vsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 198 -STHNLGSVTEFCDYTVMV 215 (272)
T ss_pred -EeCCHHHHHHhCCEEEEE
Confidence 5556655544 777654
No 260
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=7.4e-21 Score=163.98 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=90.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+++|+.++..... . .. ....+.++++.+|+.. ..++++++||||||||++|||||+.+|++||||
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~---~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIK---V--GN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred hcCCCCCHHHHHHhhccccc---c--cc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46778999999987532110 0 01 1223457899999964 579999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+++.+.. .+|++ .+||+.++.. |++++|.
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~~~tvi~---vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEFPGCAVV---ISHDRWFLDRIATHILAFE 516 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCeEEE---EECCHHHHHHhCCEEEEEE
Confidence 99999999999999987663 37888 6777777665 8998885
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=5.5e-21 Score=142.98 Aligned_cols=86 Identities=33% Similarity=0.470 Sum_probs=73.3
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccc
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQ 122 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~ 122 (137)
++++.+|+.+..++++..||||||||++|||||+.+|+++||||||+|||+.++..+++.+. +.+|++ .+|
T Consensus 80 q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii---~sh 156 (180)
T cd03214 80 QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM---VLH 156 (180)
T ss_pred HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE---EeC
Confidence 47899999988899999999999999999999999999999999999999999998877443 569999 555
Q ss_pred hhhhhhc--CceEEecC
Q psy317 123 NLQQTIR--NEVCLISD 137 (137)
Q Consensus 123 ~~~~~~~--~~~~~~~~ 137 (137)
++..+.. |+++++.+
T Consensus 157 ~~~~~~~~~d~~~~l~~ 173 (180)
T cd03214 157 DLNLAARYADRVILLKD 173 (180)
T ss_pred CHHHHHHhCCEEEEEEC
Confidence 5555543 88888753
No 262
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=1.5e-20 Score=162.08 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT 121 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~ 121 (137)
.+++.++++.+|+.. .++++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+. +.||++ .+
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tvii---is 217 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVA---VT 217 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEE---Ee
Confidence 356788999999964 789999999999999999999999999999999999999999999888766 358999 66
Q ss_pred chhhhhhc--CceEEecC
Q psy317 122 QNLQQTIR--NEVCLISD 137 (137)
Q Consensus 122 ~~~~~~~~--~~~~~~~~ 137 (137)
||+.++.. |++++|.+
T Consensus 218 Hd~~~~~~~~d~i~~l~~ 235 (556)
T PRK11819 218 HDRYFLDNVAGWILELDR 235 (556)
T ss_pred CCHHHHHhhcCeEEEEeC
Confidence 67776665 88888753
No 263
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=148.39 Aligned_cols=117 Identities=26% Similarity=0.306 Sum_probs=87.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.+++ .|+++|+.++.... ...... ..++++.+.++.+++. +..++++.+||||||||++|||||+.+|+++
T Consensus 109 ~~~~-~tv~eni~~~~~~~---~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 109 NPFP-KSIFENVAYGLRIR---GVKRRS-ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred cCCc-chHHHHHHhHHHHc---CCChHH-HHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3455 49999998753211 000011 0235677788888774 4567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||+|||+.++..+++.+. +.||++ .+|++..+.. |++++|.+
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~~~tiii---vth~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKNKVTILI---VTHNMQQAARVSDYTAYMYM 235 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999998888554 468999 6667776654 88888753
No 264
>KOG0061|consensus
Probab=99.84 E-value=3.8e-21 Score=167.99 Aligned_cols=125 Identities=27% Similarity=0.357 Sum_probs=98.5
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCC-----CCCHHHHHHHHHHHHHhcC
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTS-----NLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~-----~LSgGqkqrv~IArAL~~~ 84 (137)
-++.+++.+||+|++.+...++.+...+..+ ..++++++++.+|+.+.+|+.++ .+||||||||+||.-|+++
T Consensus 111 QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~--k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~ 188 (613)
T KOG0061|consen 111 QDDVLLPTLTVRETLRFSALLRLPSSLSKEE--KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTD 188 (613)
T ss_pred ccccccccccHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcC
Confidence 3566899999999999987665433222233 67899999999999999999886 5999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|.+|+|||||+|||..+..++++.++ |.||++|.|-+-===.-+=|++++||
T Consensus 189 P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 189 PSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS 245 (613)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence 99999999999999999999988655 67888877765311111116666654
No 265
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=161.20 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=90.2
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
+++.+|+.+|+.+.. .. .. .++++.++++.+|+. ...++++++||||||||++|||||+.+|++|||||
T Consensus 395 ~~~~~t~~~~~~~~~-----~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWR-----QE---GD--DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhc-----cC---Cc--cHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 455689999886321 00 11 235678899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317 93 PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||+.++..+++.+. +.||++ .+||+.++.. |++++|.+
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~~~tvi~---vsHd~~~~~~~~d~i~~l~~ 510 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKYEGTLIF---VSHDREFVSSLATRIIEITP 510 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999988766 458999 6777777765 88888753
No 266
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=7.7e-21 Score=161.13 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----c-ceeee
Q psy317 44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----D-TKVDY 116 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~-~~v~~ 116 (137)
.+++.++++.+|+.. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+. + .+|++
T Consensus 378 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii 457 (490)
T PRK10938 378 QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457 (490)
T ss_pred HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 456889999999987 8899999999999999999999999999999999999999999999988543 3 36999
Q ss_pred eccccchhhhhhcCceEEecC
Q psy317 117 TGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+||..+.+.....++++++.+
T Consensus 458 vsHd~~~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 458 VSHHAEDAPACITHRLEFVPD 478 (490)
T ss_pred EecchhhhhhhhheeEEEecC
Confidence 555555554434588888753
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=1.9e-20 Score=145.62 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317 44 SCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY 116 (137)
Q Consensus 44 ~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~ 116 (137)
.+++.++++.+++. +..++++. .||||||||++|||||+.+|++|||||||+|||+.++..+.+.+. +.||++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred HHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45677899999995 45677775 799999999999999999999999999999999999998887432 679999
Q ss_pred eccccchhhhhhcCceEEec
Q psy317 117 TGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ 136 (137)
+||..+.+.....|+++++.
T Consensus 201 ~sH~~~~~~~~~~d~i~~l~ 220 (248)
T PRK09580 201 VTHYQRILDYIKPDYVHVLY 220 (248)
T ss_pred EeCCHHHHHhhhCCEEEEEE
Confidence 55554444433247787764
No 268
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=2.2e-20 Score=141.70 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=80.6
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHH--HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSC--FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
...|+++|+.+..... .... .. ..+ .+.+.+..+ |+....++++..||+|||||++|||||+.+|+++|||
T Consensus 78 ~~~t~~enl~~~~~~~-~~~~--~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 78 QNGTIRENILFGKPFD-EERY--EK--VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred ccCcHHHHhccCCCcC-HHHH--HH--HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3679999998753211 0000 00 000 112223332 4455567788999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHh-h-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYER-K-----VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~-~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+|||+.+++.+++. + .+.||+++||..+.+.. .|++++|.+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~l~~ 202 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDN 202 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEEEeC
Confidence 99999999998877662 2 25799997777666654 589988864
No 269
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=149.47 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=87.3
Q ss_pred CCCCCCHHHHHHhhhhhhhH-------Hhhhh-cchhHHHHHHHHHHHcCCC----cccCccCCCCCHHHHHHHHHHHHH
Q psy317 14 MDPKKTPLTRMQISNGMMVL-------AAMFN-QSQAGSCFISEILDTLGLQ----EHKTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~-------~~~~~-~~~~~~~~~~~~L~~lgL~----~~~~~~~~~LSgGqkqrv~IArAL 81 (137)
+++ .|+++|+.++...... ..+.. ......+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 137 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 454 5999999875321100 00000 0111245678899999884 456888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc--Cce-EEec
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR--NEV-CLIS 136 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~--~~~-~~~~ 136 (137)
+++|++|||||||+|||+.++..+++.+. +.+|++ .+||+.++.. |++ ++|.
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiii---vtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV---VTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE---EEcCHHHHHHhcCEEEEEec
Confidence 99999999999999999999998888654 458899 6667777655 875 4554
No 270
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=1.9e-20 Score=149.60 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=85.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC-----------CCHHHHHHHHHHHH
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN-----------LSGGQKKRLSIALE 80 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~-----------LSgGqkqrv~IArA 80 (137)
+.+|+ .|+++|+.... . . ..+++.+.++.+|+....++++.. ||||||||++||||
T Consensus 86 ~~lf~-~tv~~nl~~~~-----~-----~--~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 86 VFIFS-GTFRKNLDPYG-----K-----W--SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred cccch-hhHHHHhhhcc-----C-----C--CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 33454 59999995321 0 1 123456778899998888888876 99999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 81 LVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+.+|+||||||||++||+.++..+.+.+. +.||+++||..+.+.. .||++++.+
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~--~dri~vl~~ 211 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE--CQRFLVIEE 211 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh--CCEEEEecC
Confidence 999999999999999999999987777554 5699996655544332 399998864
No 271
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=4.4e-20 Score=158.97 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQ 122 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~ 122 (137)
.++.++++.+|+.. .++++++||||||||++|||||+.+|++|||||||++||+.++..+.+.+. +.+|++ .+|
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIi---isH 216 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVA---VTH 216 (552)
T ss_pred HHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEE---EeC
Confidence 35677888888854 688999999999999999999999999999999999999999999888765 358999 666
Q ss_pred hhhhhhc--CceEEecC
Q psy317 123 NLQQTIR--NEVCLISD 137 (137)
Q Consensus 123 ~~~~~~~--~~~~~~~~ 137 (137)
|+.++.. |++++|.+
T Consensus 217 d~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 217 DRYFLDNVAGWILELDR 233 (552)
T ss_pred CHHHHHhhcCeEEEEEC
Confidence 6666655 88888753
No 272
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=162.55 Aligned_cols=121 Identities=24% Similarity=0.241 Sum_probs=95.1
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.++.+++.+|+.+|+.+..... .....+ ..+++.++++.+|+.+..++++..||+||+||++|||||+.+|++||
T Consensus 93 q~~~l~~~~tv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLl 167 (648)
T PRK10535 93 QRYHLLSHLTAAQNVEVPAVYA---GLERKQ--RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167 (648)
T ss_pred CCcccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3456778899999998753211 111112 45578899999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||||+|||+.+++.+.+.+. +.+++++||..+.+.. .||++++.+
T Consensus 168 lDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~--~d~i~~l~~ 218 (648)
T PRK10535 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ--AERVIEIRD 218 (648)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHh--CCEEEEEEC
Confidence 999999999999998877543 6799996666554321 389988864
No 273
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=3.1e-20 Score=160.51 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=89.8
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCc----------cCCCCCHHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTT----------MTSNLSGGQKKRLSIA 78 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~----------~~~~LSgGqkqrv~IA 78 (137)
.++...+.+-|++||+.++.. . . .++++.+.++.+|+.+..++ ...+||||||||++||
T Consensus 419 v~Q~~~lf~~ti~~Ni~~~~~----~-----~--~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA 487 (574)
T PRK11160 419 VSQRVHLFSATLRDNLLLAAP----N-----A--SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487 (574)
T ss_pred EcccchhhcccHHHHhhcCCC----c-----c--CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence 345555566899999987531 1 1 23456677888887665443 5677999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||++++|++|||||||++||+.+...+.+.+. +.|+++.||+.+.+.. .|+++++.+
T Consensus 488 Rall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~--~d~i~~l~~ 548 (574)
T PRK11160 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ--FDRICVMDN 548 (574)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh--CCEEEEEeC
Confidence 99999999999999999999999998888654 6699997777766543 388888754
No 274
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=4.4e-20 Score=141.37 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=63.4
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH-----hhc--cceeeeeccccchhhhhhcCce
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE-----RKV--DTKVDYTGNRTQNLQQTIRNEV 132 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-----~~~--~~~v~~~~~~~~~~~~~~~~~~ 132 (137)
.++++..||||||||++|||||+.+|++|||||||+|||+.++..+++ .+. +.||+++||..+.+.. .|++
T Consensus 134 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~--~d~i 211 (218)
T cd03290 134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH--ADWI 211 (218)
T ss_pred cccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh--CCEE
Confidence 456789999999999999999999999999999999999999987665 222 5799997777766532 4898
Q ss_pred EEecC
Q psy317 133 CLISD 137 (137)
Q Consensus 133 ~~~~~ 137 (137)
++|.+
T Consensus 212 ~~l~~ 216 (218)
T cd03290 212 IAMKD 216 (218)
T ss_pred EEecC
Confidence 88764
No 275
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=5.9e-20 Score=146.08 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN---PPIMFF 90 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~---P~iLlL 90 (137)
+.++|+.|++.+...+. ...++.++|+.+||.. ..++++.+|||||+||+.||++|+.+ |+++||
T Consensus 128 v~~ltv~e~~~~~~~~~-----------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllL 196 (261)
T cd03271 128 VLDMTVEEALEFFENIP-----------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYIL 196 (261)
T ss_pred HhcCCHHHHHHHHHhhh-----------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 45788888887653211 1235667999999987 57999999999999999999999996 799999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
||||+|||+..+..+++.+. |.||++++|..+.+. ..|+++.|
T Consensus 197 DEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~--~aD~ii~L 244 (261)
T cd03271 197 DEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK--CADWIIDL 244 (261)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 99999999999998887543 679999555544432 13888887
No 276
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.83 E-value=2.5e-20 Score=160.53 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|+++|+.++.. .. . .++++.+.++.+|+. ........+||||||||++|
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~----~~----~--~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L 491 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYART----EQ----Y--SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491 (582)
T ss_pred EccCceeecchHHHHHhcCCC----CC----C--CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence 456666667899999987531 00 0 123344455555543 23334457799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||.++|++||||||||+||+.+...+++.+. +.|+++.||+.+-+.. .|++++|++
T Consensus 492 ARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~--~D~Ii~l~~ 553 (582)
T PRK11176 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK--ADEILVVED 553 (582)
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence 999999999999999999999999998888654 5699996666644332 388888864
No 277
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.83 E-value=3.2e-20 Score=163.01 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=85.4
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IA 78 (137)
|+...+.+-|++||+.++.. . .++++.+.++..|+.+. ......+||||||||++||
T Consensus 533 ~Q~~~lf~gTI~eNi~~~~~-----~-------~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 533 LQNGRLMSGSIFENIAGGAP-----L-------TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred ccCCccCcccHHHHHhcCCC-----C-------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 45556667899999987531 0 11234445555555432 3344578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|++||||||||+||+.+.+.+++.+. +.|+++.||+.+.+.. .|++++|.+
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~--~D~Iivl~~ 659 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN--ADRIYVLDA 659 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc--CCEEEEEEC
Confidence 99999999999999999999999999998766 5799996666655433 399998864
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.83 E-value=3.2e-20 Score=163.41 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=85.3
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|++||+.++.. .. .++++.+.++..| ++........+||||||||++|
T Consensus 558 v~Q~~~lf~gTi~eNi~l~~~----~~-------~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaL 626 (710)
T TIGR03796 558 VDQDIFLFEGTVRDNLTLWDP----TI-------PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626 (710)
T ss_pred EecCChhhhccHHHHhhCCCC----CC-------CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHH
Confidence 355666667899999987521 00 1123333444444 3434445567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++|++||||||||+||+.+...+++.+. +.|+++.||+.+-+.. .|++++|.+
T Consensus 627 ARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~--~D~Iivl~~ 686 (710)
T TIGR03796 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD--CDEIIVLER 686 (710)
T ss_pred HHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh--CCEEEEEeC
Confidence 999999999999999999999999999998766 6799996666654433 399998864
No 279
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=147.92 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317 43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD 115 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~ 115 (137)
..+++.++|+.+|+.. ..+++|++|||||+||+.|||||+.+|+++++|||+|+||...+.++++.+. |.+.+
T Consensus 85 ~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~l 164 (268)
T COG4608 85 RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164 (268)
T ss_pred HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEE
Confidence 4567999999999965 7899999999999999999999999999999999999999999999988655 67888
Q ss_pred eeccccchhhhhhc--CceEEec
Q psy317 116 YTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+ .+||+..+.- ||+.++.
T Consensus 165 F---IsHDL~vv~~isdri~VMy 184 (268)
T COG4608 165 F---ISHDLSVVRYISDRIAVMY 184 (268)
T ss_pred E---EEEEHHhhhhhcccEEEEe
Confidence 8 8999999888 8887753
No 280
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.82 E-value=7.3e-20 Score=158.62 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=84.6
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-----HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-----ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-----~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~ 82 (137)
++...+.+.|+++|+.++..- ... ++ ..+. +.+.+..+ |++...+.....||||||||++|||||+
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~~-~~~----~~--~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGREG-ATD----EE--VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred ccCCccCcccHHHHHhcCCCC-CCH----HH--HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 444445568999999876310 000 01 1111 12223322 5555566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
.+|++|||||||+|||+.+...+.+.+. +.||++.||+.+.+.. .|++++|.+
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~--~d~i~~l~~ 544 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN--ADLVLFLDQ 544 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc--CCEEEEEEC
Confidence 9999999999999999999998887554 6799997777766533 488888753
No 281
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=7.1e-20 Score=157.11 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=85.8
Q ss_pred cCCCCCCCCCHHHHHHhhhh-hhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 10 IWDSMDPKKTPLTRMQISNG-MMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
|+...+.+.|+++|+.++.. ... ......- ....+.+.++.+ |++...+....+||||||||++||||++++|+
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~-~~~~~~~--~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADP-EKIIEAA--KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCH-HHHHHHH--HHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 44444455699999985421 100 0000000 011234556666 66666777889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||||||+|||+.+...+++.+ .+.|+++.||+.+-+. ..|++++|.+
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~--~~d~i~~l~~ 528 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG--CVDKILVLQD 528 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence 99999999999999999888744 3579999777665332 2399998864
No 282
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=5.7e-20 Score=160.78 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=90.9
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++++||.+|+.++.. .. .. .. ....+.+++..+++. +..+++++.||||||||++||+||+.+|++||||
T Consensus 393 ~l~~~~tv~e~l~~~~~-~~-~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD 465 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQ-EV-MV---NG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465 (635)
T ss_pred ccCCCCCHHHHHHhhcc-cc-cc---cc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46788999999986421 10 00 11 234577899999996 4679999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+.+.+. +.||++ .+||..++.. ++++++.
T Consensus 466 EPt~~LD~~~~~~l~~~l~~~~~tvi~---vSHd~~~~~~~~d~i~~l~ 511 (635)
T PRK11147 466 EPTNDLDVETLELLEELLDSYQGTVLL---VSHDRQFVDNTVTECWIFE 511 (635)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCeEEE---EECCHHHHHHhcCEEEEEe
Confidence 9999999999999888766 458999 5566666554 8888885
No 283
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.82 E-value=5.3e-20 Score=157.91 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=85.4
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+++-|+++|+.++.. .. . .++++.+.++.+|+.+. .......||||||||++|
T Consensus 411 v~Q~~~lf~~Ti~~Ni~~~~~----~~----~--~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 411 VSQDVVLFNDTIANNIAYGRT----EQ----A--DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred EccCcccccccHHHHHhcCCC----CC----C--CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 456667778899999987631 00 1 12345556666665433 223346799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||++++|+++|||||||+||+.+.+.+++.+. +.|+++.||+.+.+.. .|+|+.+.+
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~--~D~ii~l~~ 542 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK--ADRIVVMDD 542 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHh--CCEEEEEeC
Confidence 999999999999999999999999999987554 5699996666644322 388887753
No 284
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=9.9e-20 Score=138.43 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=63.6
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEe
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
.++++..|||||+||++|||||+.+|+++||||||+|||+.++..+++.+. +.|++++||..+.+.. .|++++|
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 367889999999999999999999999999999999999999998888654 5789995555554432 3899888
Q ss_pred cC
Q psy317 136 SD 137 (137)
Q Consensus 136 ~~ 137 (137)
++
T Consensus 197 ~~ 198 (207)
T cd03369 197 DA 198 (207)
T ss_pred EC
Confidence 64
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=8.1e-20 Score=137.63 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=74.6
Q ss_pred HHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317 48 SEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN--PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN 119 (137)
Q Consensus 48 ~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~ 119 (137)
.+.++.+++.. ..++++.+||||||||++|||||+.+ |+++||||||++||+.++..+.+.+. |.+|+++||
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 46889999986 47899999999999999999999999 99999999999999999998887543 679999776
Q ss_pred ccchhhhhhcCceEEecC
Q psy317 120 RTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ 137 (137)
..+.+. ..|++++|.+
T Consensus 148 ~~~~~~--~~d~i~~l~~ 163 (176)
T cd03238 148 NLDVLS--SADWIIDFGP 163 (176)
T ss_pred CHHHHH--hCCEEEEECC
Confidence 665542 2489988853
No 286
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=2.9e-19 Score=138.52 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=72.8
Q ss_pred HHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317 48 SEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN 119 (137)
Q Consensus 48 ~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~ 119 (137)
.++++.+|+.. ..++++.+||||||||++||+||+.+| ++|||||||+|||+..+..+++.+. |.+|+++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 56899999987 579999999999999999999999998 5999999999999999998887543 679999555
Q ss_pred ccchhhhhhcCceEEe
Q psy317 120 RTQNLQQTIRNEVCLI 135 (137)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (137)
..+.+. ..|+++++
T Consensus 198 ~~~~~~--~~d~i~~l 211 (226)
T cd03270 198 DEDTIR--AADHVIDI 211 (226)
T ss_pred CHHHHH--hCCEEEEe
Confidence 554432 23999988
No 287
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=9.7e-20 Score=160.10 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=87.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc---------CCCCCHHHHHHHHHHHHH
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM---------TSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~---------~~~LSgGqkqrv~IArAL 81 (137)
+...++..|+++|+.++....... .... .++++.++++.+|+.+..+++ +++||||||||++|||||
T Consensus 522 Q~~~l~~~tv~eni~~~~~~~~~~--~~~~--~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 522 QRPYMTLGTLRDQIIYPDSSEDMK--RRGL--SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred CCCCCCCcCHHHHHhcCCChhhhh--ccCC--CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 333333449999998764221100 0011 234677889999998766554 378999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc-CceEEec
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
+++|+++||||||+|||+.+...+.+.+. +.|++++||+ +..... |++++|.
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~---~~~~~~~d~il~l~ 652 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHR---KSLWKYHEYLLYMD 652 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCc---hHHHHhCCEEEEEe
Confidence 99999999999999999999999988665 6799995554 444434 8998875
No 288
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=8e-20 Score=136.88 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+|||||++|||||+.+|++|||||||+|||+.++..+++.+. +.||++ .+|++..+.. |+++++.+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sh~~~~~~~~~d~v~~l~~ 179 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYE 179 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEecC
Confidence 99999999999999999999999999999999999998888543 579999 5666666555 89998864
No 289
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.2e-20 Score=145.25 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
+-..+||++-+.||+..+. .+....+ ....+++.++.++|++..+++..+||||||||..||+.++++.++++||||
T Consensus 86 i~~rlTV~dLv~FGRfPYS-qGRlt~e--D~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 86 INSRLTVRDLVGFGRFPYS-QGRLTKE--DRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hhheeEHHHHhhcCCCccc-CCCCchH--HHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 3456899999999875432 1212223 567889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
.++||....-+++..++ |.||.+ +.||+-+|-. |+++++.
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~Ktivi---VlHDINfAS~YsD~IVAlK 210 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVV---VLHDINFASCYSDHIVALK 210 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEE---EEecccHHHhhhhheeeec
Confidence 99999999999888766 679998 8999999998 8887764
No 290
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.82 E-value=1e-19 Score=157.32 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=82.3
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IA 78 (137)
|+...+.+-|+++|+.++.. . . .++++.+.++.+| ++.........||||||||++||
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~-~---~-------~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRP-D---A-------TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred ecCcccccccHHHHHhcCCC-C---C-------CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 45555667899999987621 0 0 0112233333333 33334445677999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|+++|||||||+||+.+...+++.+. +.|+++.||+.+-+.. .|+++.+.+
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~--~D~ii~l~~ 544 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN--ADRILVFDN 544 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh--CCEEEEEEC
Confidence 99999999999999999999999999988554 5799996666544321 389888754
No 291
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.1e-20 Score=160.84 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
..++.++++.+|+. ...++++++|||||||||+||+||+.+|++|||||||++||+.++.++.+.+. +.+|++ .
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tvii---v 202 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL---I 202 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEE---E
Confidence 45788999999997 56799999999999999999999999999999999999999999999988776 568999 6
Q ss_pred cchhhhhhc--CceEEecC
Q psy317 121 TQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~ 137 (137)
+||..++.. +++++|.+
T Consensus 203 sHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 203 SHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred eCCHHHHHHhcCEEEEEeC
Confidence 777777655 88888753
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=1e-19 Score=143.80 Aligned_cols=90 Identities=24% Similarity=0.273 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG 118 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~ 118 (137)
...+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+++.+. +.+|++
T Consensus 117 ~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi-- 194 (255)
T cd03236 117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV-- 194 (255)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--
Confidence 4567889999999988899999999999999999999999999999999999999999887777543 579999
Q ss_pred cccchhhhhhc--CceEEec
Q psy317 119 NRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~ 136 (137)
.+||+.++.. |+++++.
T Consensus 195 -iSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 195 -VEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred -EECCHHHHHHhCCEEEEEC
Confidence 6666666664 8888874
No 293
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.81 E-value=1e-19 Score=157.25 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=84.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA 78 (137)
|+...+.+-|+++|+.++... .++++.+.++.+|+.+ .......+||||||||++||
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~------------~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDI------------SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred ccCCccccchHHHHHHhCCCC------------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 455555567999999976311 1123445555555443 33345677999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|++||||||||+||+.+.+.+.+.+. +.|+++.||+.+.+.. .|++|++.+
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~--~D~ii~l~~ 549 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE--ADTILVLHR 549 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence 99999999999999999999999998887654 5699997777655543 388888864
No 294
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=3.2e-20 Score=142.58 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=98.3
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhH--Hhh-hhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVL--AAM-FNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~--~~~-~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
-|.+|.++||++|+.+....... ..+ .+...+.+.+++++|...||.+..++..+.||.||||+++|++-++++|++
T Consensus 89 ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~l 168 (249)
T COG4674 89 KPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKL 168 (249)
T ss_pred CCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcE
Confidence 36789999999999987532211 111 111111356899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc---c-ceeeeeccccchhhhhhc--CceEEec
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV---D-TKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~---~-~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|+||||++|+.-.+..+.-+.+. + -.|++ ..|||++... ++|-+|.
T Consensus 169 LLlDEPvAGMTd~Et~~taeLl~~la~~hsilV---VEHDM~Fvr~~A~~VTVlh 220 (249)
T COG4674 169 LLLDEPVAGMTDAETEKTAELLKSLAGKHSILV---VEHDMGFVREIADKVTVLH 220 (249)
T ss_pred EEecCccCCCcHHHHHHHHHHHHHHhcCceEEE---EeccHHHHHHhhheeEEEe
Confidence 99999999999998887666544 3 37777 8999999887 8887763
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.81 E-value=1.3e-19 Score=134.37 Aligned_cols=73 Identities=27% Similarity=0.385 Sum_probs=61.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhcCceEEecC
Q psy317 63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
++..||||||||++|||||+.+|+++||||||+|||+.++..+.+.+. +.|++++||..+.. ...|+++++.+
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~--~~~d~i~~l~~ 162 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW--KFHDRVLDLDG 162 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH--hhCCEEEEEcC
Confidence 468999999999999999999999999999999999999998888655 57899977665432 23499998864
No 296
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.7e-19 Score=136.27 Aligned_cols=72 Identities=28% Similarity=0.300 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|||||+||++|||||+.+|++|||||||+|||+.++..+++.+. +.||+++||..++.-....|+++++.+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~ 184 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKR 184 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcC
Confidence 999999999999999999999999999999999999998888543 679999555543211222389988864
No 297
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.81 E-value=9e-20 Score=155.64 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=81.4
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA 78 (137)
++...+.+.|++||+.++... . .++++.+.++..|+.+ .......+||||||||++||
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~----~-------~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPD----A-------SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred cCCCcccCcCHHHHHhccCCC----C-------CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 445555578999999875310 0 1123344455555433 33445678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEe
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
||++++|+++||||||++||+.+.+.+++.+. +.|+++.||+.+-+.. .|+++++
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~--~d~i~~l 529 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER--ADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEeC
Confidence 99999999999999999999999999988655 5699995655544322 2888865
No 298
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.81 E-value=1.6e-19 Score=141.89 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=73.2
Q ss_pred HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317 47 ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR 120 (137)
Q Consensus 47 ~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~ 120 (137)
+.+.++.+ |++...+.++..||+||+||++|||||+++|++|||||||+|||+.++..+++.+. +.||+++||.
T Consensus 135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~ 214 (257)
T cd03288 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 214 (257)
T ss_pred cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34455655 67767778889999999999999999999999999999999999999998887554 6799996666
Q ss_pred cchhhhhhcCceEEecC
Q psy317 121 TQNLQQTIRNEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (137)
.+.+.. .|+++++++
T Consensus 215 ~~~~~~--~dri~~l~~ 229 (257)
T cd03288 215 VSTILD--ADLVLVLSR 229 (257)
T ss_pred hHHHHh--CCEEEEEEC
Confidence 666543 489888853
No 299
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=8.2e-20 Score=141.96 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=95.6
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhc-chhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQ-SQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~-~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
|-...++++|+.||+.+........++... .....+...+.++.+ |+++..+.+++-|||||||-+++++|..+.|+
T Consensus 89 p~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred hhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCc
Confidence 455678999999999987432111111100 000233445566665 56788999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||+|||-|++|||...+.+++.-. +.|-.| .||+|++|.. +|.|++.
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM---VTHnm~~Al~yG~RlImLh 223 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM---VTHNMEDALDYGNRLIMLH 223 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE---EeccHHHHHhhCCeEEEEe
Confidence 999999999999999999988533 557778 9999999999 8998874
No 300
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.1e-19 Score=136.82 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhh--hcCc
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQT--IRNE 131 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~--~~~~ 131 (137)
.++++..||+||+||++|||||+.+|++|||||||+|||+.++..+++.+. +.++++++| |+...+ ..|+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~--h~~~~~~~~~d~ 189 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY--QASDEIYDLFDK 189 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc--CCHHHHHHhCCe
Confidence 567889999999999999999999999999999999999999998888544 345555432 333333 3488
Q ss_pred eEEecC
Q psy317 132 VCLISD 137 (137)
Q Consensus 132 ~~~~~~ 137 (137)
++++.+
T Consensus 190 i~~l~~ 195 (202)
T cd03233 190 VLVLYE 195 (202)
T ss_pred EEEEEC
Confidence 888764
No 301
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=1.1e-19 Score=170.20 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=90.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhh--hhcchhHHHH-HHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHHhc
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAM--FNQSQAGSCF-ISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALELVN 83 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~--~~~~~~~~~~-~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL~~ 83 (137)
+.+++.+||+|++.++..++..... ....++..++ ++++++.+||.+..+++ ++.|||||||||+||++|+.
T Consensus 147 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 4578899999999987543211000 0001012223 46689999998877765 46799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|++++|||||+|||+.++..+++.++ |.||++++|..- .++.. |+|++|++
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~--~~i~~l~D~v~~L~~ 286 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS--QDAYELFDKVIVLYE 286 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC--HHHHHhhceEEEEeC
Confidence 999999999999999999998888543 568999554332 33433 99998864
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.81 E-value=1.3e-19 Score=160.28 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+.|++||+.++..- . .++++.+.++..|+. ...+....+||||||||++|
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~----~-------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal 628 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTD----T-------PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628 (711)
T ss_pred EecCccccccCHHHHHhcCCCC----C-------CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence 4566667789999999876310 0 112334445554443 33344567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh--ccceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERK--VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||++++|+|+|||||||+||+.+.+.+.+.. .+.|+++.||+.+-+.. .|++++|.+
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~--aD~IivL~~ 688 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER--ADQILVLKK 688 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh--CCEEEEEEC
Confidence 99999999999999999999999998888733 36799996666654432 299988854
No 303
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=9.9e-20 Score=153.91 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=99.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
++.+++.+||.||+.++............. ..++++++.+++|+.-..+.+++.||-|+||||+|-+||.++|++|||
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~--~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL 164 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLIL 164 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHH--HHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEE
Confidence 578899999999999885321111111122 567899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||+-|-|.+.+.+++.++ |.+|+| .||=+.++++ |||-+|.
T Consensus 165 DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~---ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 165 DEPTAVLTPQEADELFEILRRLAAEGKTIIF---ITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EeccHHHHHHhhCeeEEEe
Confidence 99999999999999999665 889999 5566666666 7777663
No 304
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.81 E-value=2.8e-19 Score=135.42 Aligned_cols=72 Identities=33% Similarity=0.479 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
.||||||||++|||||+.+|+++||||||+|||+.++..+++.+. +.||+++||..++.-....|++++|.+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~ 187 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC
Confidence 899999999999999999999999999999999999998888543 669999555443211112488888763
No 305
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.9e-19 Score=133.88 Aligned_cols=68 Identities=29% Similarity=0.505 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+||++|||||+.+|++|||||||+|||+.++..+++.+. |.+|++ .+||...+.. |+++++++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii---~th~~~~~~~~~d~i~~l~~ 170 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL---SSHILEEAERLCDRVAILNN 170 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---ECCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999998888544 568999 5666666654 89988864
No 306
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=1.2e-19 Score=154.97 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=77.1
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|++||+.++.. .. .++++.+.++..|+++. ......+||||||||++|
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~----~~-------~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRP----DA-------TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred EccCcccccccHHHHHhccCC----CC-------CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 466667778899999997631 00 12344555666555432 233456799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR 120 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~ 120 (137)
||||+.+|++||||||||+||+.+...+.+.+. +.|+++.||+
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999999999999999999998888654 5699997765
No 307
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=1.4e-19 Score=157.67 Aligned_cols=89 Identities=27% Similarity=0.306 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR 120 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~ 120 (137)
.++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||++||+.++..+++.+. +.+|++ .
T Consensus 191 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIi---v 267 (590)
T PRK13409 191 GKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV---V 267 (590)
T ss_pred HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE---E
Confidence 467889999999988999999999999999999999999999999999999999999998888554 678999 6
Q ss_pred cchhhhhhc--CceEEec
Q psy317 121 TQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~ 136 (137)
+||+..+.. |+|+++.
T Consensus 268 sHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAY 285 (590)
T ss_pred eCCHHHHHHhCCEEEEEe
Confidence 666666555 8998874
No 308
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.81 E-value=1.7e-19 Score=155.08 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=84.9
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+.|+++|+.++.. .. .++++.+.++.+|+ +.........||||||||++|
T Consensus 419 ~~Q~~~lf~~Ti~~Ni~~~~~----~~-------~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 419 VPQDPVLFAASVMENIRYGRP----DA-------TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred EccCCccccccHHHHHhcCCC----CC-------CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 466677778999999987531 00 11233344444443 333344567799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||++++|++||||||||+||+.+.+.+++.+. +.|+++.||+.+.+.. .|+|+.+++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~--~d~vi~l~~ 549 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK--ADRIVVMDQ 549 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEEEC
Confidence 999999999999999999999999998887554 5799996666655433 288888754
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=142.63 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcc-------ceee
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVD-------TKVD 115 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~-------~~v~ 115 (137)
..+++..+++.+|+.+.++++..+||-|||||+.||||||.+|++|||||||+|||...++.+.+++.+ .+++
T Consensus 148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll 227 (257)
T COG1119 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL 227 (257)
T ss_pred HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEE
Confidence 456788899999999999999999999999999999999999999999999999999999999997763 3788
Q ss_pred eeccccchhhhhhcCceEEec
Q psy317 116 YTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|.||...++..-. .|+..|+
T Consensus 228 ~VtHh~eEi~~~~-th~lll~ 247 (257)
T COG1119 228 FVTHHAEEIPPCF-THRLLLK 247 (257)
T ss_pred EEEcchhhccccc-ceEEEee
Confidence 9555554443222 4554443
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.80 E-value=1.6e-19 Score=158.80 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=84.6
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|++||+.++.. .. .++++.+.++..|+ +........+||||||||++|
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~----~~-------~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlal 612 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAP----YA-------DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCC----CC-------CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence 355566667899999987631 00 11233344444444 333445567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+.+|+++|||||||+||+.+...+++.+. +.|+++.||+.+-+.. .|+++++.+
T Consensus 613 ARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~--~D~iivl~~ 674 (694)
T TIGR03375 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL--VDRIIVMDN 674 (694)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh--CCEEEEEeC
Confidence 999999999999999999999999998888654 5799996666654432 289988854
No 311
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=1.9e-19 Score=158.50 Aligned_cols=119 Identities=21% Similarity=0.276 Sum_probs=85.1
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHH-----HHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGS-----CFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~-----~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~ 82 (137)
++...+.+.|++||+.++.. .... ++ .. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 537 ~q~~~lf~~ti~eNi~~~~~-~~~~----~~--i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCNP-GAPF----EH--VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred ccCCeehhhhHHHHHhcCCC-CCCH----HH--HHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 45556667899999987531 0000 00 11 1122334433 4555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
++|++|||||||++||+.+...+++.+. +.|+++.||+.+.+.. .|+++++.+
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~--~d~ii~l~~ 666 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA--CDRIIVLEK 666 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh--CCEEEEEeC
Confidence 9999999999999999999999888655 5699997776655433 388888754
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=2.4e-19 Score=156.82 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT 121 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~ 121 (137)
..++.++++.+|+. .++++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. +.+|++ .+
T Consensus 136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvli---vs 210 (635)
T PRK11147 136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIF---IS 210 (635)
T ss_pred HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEE---Ee
Confidence 45788999999996 388999999999999999999999999999999999999999999988776 358999 66
Q ss_pred chhhhhhc--CceEEecC
Q psy317 122 QNLQQTIR--NEVCLISD 137 (137)
Q Consensus 122 ~~~~~~~~--~~~~~~~~ 137 (137)
||..++.. +++++|.+
T Consensus 211 Hd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 211 HDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCHHHHHHhcCeEEEEEC
Confidence 77776655 88888753
No 313
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.80 E-value=3.9e-19 Score=153.12 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=85.5
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~ 82 (137)
|++..+.+-|+++|+.++..- ... ++ ..+ .+.+.+..+ |++.........||||||||++||||++
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~-at~----ee--i~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPD-ATD----EE--IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred cccceeecccHHHHHhcCCCC-CCH----HH--HHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 456666669999999987421 000 11 111 123444454 5666666677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
.+|+|||||||||+||+.+...+.+.+. +.|+++.+|+.+-+.. .|+++++.
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~--aD~IiVl~ 537 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN--ADRIIVLD 537 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh--CCEEEEEE
Confidence 9999999999999999999988888654 5588886666655444 38888774
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.5e-19 Score=156.98 Aligned_cols=91 Identities=24% Similarity=0.372 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
..++.++|..+++. ...+++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.+. +.||++ .
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~---v 483 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVV---V 483 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEE---E
Confidence 35678899999996 46899999999999999999999999999999999999999999999988665 348999 6
Q ss_pred cchhhhhhc--CceEEecC
Q psy317 121 TQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~ 137 (137)
+||+.++.. |+++++.+
T Consensus 484 SHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 484 SHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred eCCHHHHHHhCCEEEEEEC
Confidence 677776655 88888753
No 315
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.79 E-value=3e-19 Score=157.34 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=84.0
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|++||+.++.... . .++++.+.++..| ++........+||||||||++|
T Consensus 553 v~Q~~~lf~gTI~eNi~l~~~~~---~-------~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 553 LPQEPYIFSGSILENLLLGAKEN---V-------SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred EecCceehhHHHHHHHhccCCCC---C-------CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 35566666789999999762111 0 1122333344333 3334455677899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||++++|++||||||||+||+.+.+.+++.+. +.|+++.||+..-+.. .|+++++++
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~--~D~i~~l~~ 683 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ--SDKIIVLDH 683 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc--CCEEEEEEC
Confidence 999999999999999999999999998887654 5799996666654322 399988864
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=2e-19 Score=135.71 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=93.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+.+|+ -||++|+.|+..++... - ...++...|+++++.+ .+++++.+||||+|||++|+|-|..-|+||+
T Consensus 85 ~paLfg-~tVeDNlifP~~~r~rr-----~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL 156 (223)
T COG4619 85 TPALFG-DTVEDNLIFPWQIRNRR-----P--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILL 156 (223)
T ss_pred Cccccc-cchhhccccchHHhccC-----C--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEE
Confidence 445554 79999999886554221 1 3467788999999976 5689999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
||||||+||+.+++.+-+++- +..|.- .|||=.||++ ++++-+.
T Consensus 157 LDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~W---iTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 157 LDEITSALDESNKRNIEEMIHRYVREQNVAVLW---ITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred ecCchhhcChhhHHHHHHHHHHHhhhhceEEEE---EecChHHHhhhhheEEEec
Confidence 999999999999988766432 457777 7999999999 8887553
No 317
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=4.2e-19 Score=153.25 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=81.5
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHHH
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIAL 79 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IAr 79 (137)
+...+.+-|+++|+.++..- . .++++.+.++..+ ++...+....+||||||||++|||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~----~-------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPD----A-------TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR 464 (569)
T ss_pred cCCeeccccHHHHHhcCCCC----C-------CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 33344456999999875310 0 0112223334333 344445667889999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 80 ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+++|+++||||||++||+.+...+++.+. +.|+++.||+...+.. .|+++++.+
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~--~d~i~~l~~ 524 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE--ASEILVMQH 524 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc--CCEEEEEeC
Confidence 9999999999999999999999998888654 6799997766654433 388888753
No 318
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.6e-19 Score=151.65 Aligned_cols=113 Identities=21% Similarity=0.249 Sum_probs=84.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC----------ccCCCCCHHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT----------TMTSNLSGGQKKRLSIAL 79 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~----------~~~~~LSgGqkqrv~IAr 79 (137)
++...+..-|++||+.++.. .. .++.+.++++..|+.+..+ .....|||||+||+++||
T Consensus 401 ~Q~p~lf~gTireNi~l~~~----~~-------s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 401 SQNPYLFAGTIRENILLARP----DA-------SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred CCCCccccccHHHHhhccCC----cC-------CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 45566777899999997631 11 2345566777776654433 345669999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHhHHHHHHh----hccceeeeeccccchhhhhhc-CceEEec
Q psy317 80 ELVNNPPIMFFDEPTSPLHKAEFTPKYER----KVDTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~----~~~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
||.++++++|+||||++||..+.+.+.+. .++.||++.||+.|+ +.+ |+|+++.
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~---~~~~D~I~vld 528 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED---AADADRIVVLD 528 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH---HhcCCEEEEec
Confidence 99999999999999999999999877774 347899995555555 445 7777764
No 319
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=4.7e-19 Score=156.88 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=83.8
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
++..++.+-|++||+.++..-...+.. .+.....-+.+....+ |++........+||||||||++|||||.++|+|
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i--~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEATDEEI--IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCCHHHH--HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 567778889999999986321000000 0000001122223322 444555667888999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
||||||||+||+.+...+++.+. |.|+++.+|+. .-... |+++++.
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl---~ti~~adrIiVl~ 681 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL---STIRSADRIIVLD 681 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc---hHhhhccEEEEcc
Confidence 99999999999999999998655 67999955554 33333 7777764
No 320
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5e-19 Score=132.13 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhcCceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||||||++|||||+.+|+++||||||+|||+.++..+++.+. +.+++++||..+.+... .|+++++++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~-~d~i~~l~~ 176 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL-ADRVVVLRD 176 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cCEEEEEeC
Confidence 99999999999999999999999999999999999998888543 47999955555444322 288888763
No 321
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=4.3e-19 Score=166.84 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=83.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~IA 78 (137)
++...+++.|++|||.++.. .. .++.+.+.++..+ ++.........||||||||++||
T Consensus 1302 ~Qep~LF~gTIreNI~~g~~----~a-------t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265 1302 SQEPMLFNMSIYENIKFGKE----DA-------TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370 (1466)
T ss_pred CCCCccccccHHHHHhcCCC----CC-------CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHH
Confidence 56666778999999998731 00 1122333444433 33344456678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|+|||||||||+||+.+.+.+.+.+ .+.|+++.+|+..-++. .|++++|.+
T Consensus 1371 RALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~--aD~Ivvl~~ 1433 (1466)
T PTZ00265 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR--SDKIVVFNN 1433 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh--CCEEEEEeC
Confidence 9999999999999999999999988887643 36699996666654443 288888863
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=1.2e-18 Score=139.57 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=62.5
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEE
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCL 134 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~ 134 (137)
.++++..||||||||++|||||+.+|++|||||||+|||+.++..+++.+ .+.+|+++||..+.+. ..|++++
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~--~~d~i~~ 230 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK--KADKILI 230 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH--hCCEEEE
Confidence 34567899999999999999999999999999999999999998777632 2679999766665553 2389988
Q ss_pred ecC
Q psy317 135 ISD 137 (137)
Q Consensus 135 ~~~ 137 (137)
|.+
T Consensus 231 l~~ 233 (282)
T cd03291 231 LHE 233 (282)
T ss_pred EEC
Confidence 864
No 323
>PLN03073 ABC transporter F family; Provisional
Probab=99.78 E-value=5.9e-19 Score=156.59 Aligned_cols=91 Identities=22% Similarity=0.297 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
.+++.++|+.+|+.. ..++++..||||||||++|||||+.+|++|||||||+|||+.++..+++.+. +.||++ .
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIi---v 680 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLM---V 680 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEE---E
Confidence 356788999999974 6789999999999999999999999999999999999999999999988765 358999 6
Q ss_pred cchhhhhhc--CceEEecC
Q psy317 121 TQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~ 137 (137)
+||+.++.. +++++|.+
T Consensus 681 SHd~~~i~~~~drv~~l~~ 699 (718)
T PLN03073 681 SHDEHLISGSVDELWVVSE 699 (718)
T ss_pred ECCHHHHHHhCCEEEEEEC
Confidence 677777765 88888753
No 324
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.7e-19 Score=151.83 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=92.1
Q ss_pred hccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHH
Q psy317 8 SSIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLS 76 (137)
Q Consensus 8 ~~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~ 76 (137)
-.++...+..-|+++|+.++.. . . -++.+.++++.+|+++. .+.-...|||||+||++
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~~----~----A---sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLANP----D----A---SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred hhccchHHHHHHHHHHHhhcCC----C----C---CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 3567777778899999986531 1 1 13455667888877553 34446789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhccceeeeeccccchhhhhhc-CceEEec
Q psy317 77 IALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKVDTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
|||+|.++.+++||||||.|||+.+..++++ ..+|+|+++ .||.+..+-+ |++|++.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~---vTHrL~~le~~drIivl~ 546 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM---VTHRLRGLERMDRIIVLD 546 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE---EecccccHhhcCEEEEEE
Confidence 9999999999999999999999999998887 456999999 8888888888 9999875
No 325
>PLN03073 ABC transporter F family; Provisional
Probab=99.78 E-value=7.5e-19 Score=155.94 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
+.++.++|..+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.++.+.+. +.||++ .
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tvii---v 397 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIV---V 397 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEE---E
Confidence 45677788889986 45688999999999999999999999999999999999999999999999777 679999 5
Q ss_pred cchhhhhhc--CceEEecC
Q psy317 121 TQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~ 137 (137)
+||..+... +++++|.+
T Consensus 398 sHd~~~l~~~~d~i~~l~~ 416 (718)
T PLN03073 398 SHAREFLNTVVTDILHLHG 416 (718)
T ss_pred ECCHHHHHHhCCEEEEEEC
Confidence 666666554 88888753
No 326
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=7.5e-19 Score=131.04 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+..||||||||++||||++.+|++|||||||+|||+.++..+++.+. +.||+++||..+.+.. .|+++++.+
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~~ 171 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLEN 171 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence 78999999999999999999999999999999999999998888654 5699997777666542 389988864
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=9.4e-19 Score=130.12 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+. +.+|+++||..+.+. ..|+++++.+
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~v~~l~~ 170 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA--SADRILVLED 170 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEEEC
Confidence 99999999999999999999999999999999999998887543 569999666665442 2499998864
No 328
>KOG0057|consensus
Probab=99.77 E-value=1.1e-18 Score=149.24 Aligned_cols=114 Identities=24% Similarity=0.262 Sum_probs=94.1
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I 77 (137)
.|++.++.+-|+..|+.+|.. . . . .+++.++.+..|+.+. ...+...|||||||||+|
T Consensus 430 VPQd~~LFndTIl~NI~YGn~-s---a----s---~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl 498 (591)
T KOG0057|consen 430 VPQDSVLFNDTILYNIKYGNP-S---A----S---DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL 498 (591)
T ss_pred eCCcccccchhHHHHhhcCCC-C---c----C---HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH
Confidence 488999999999999998752 1 1 1 2345566666666442 445567799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
|||++.+|+|+++|||||+||..+...+++.+. +.|+++ .-||+.-+.+ |++|++.
T Consensus 499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~---IvH~l~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 499 ARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM---IVHRLDLLKDFDKIIVLD 559 (591)
T ss_pred HHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE---EEecchhHhcCCEEEEEE
Confidence 999999999999999999999999999988766 569999 8899999999 9999986
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=1.1e-18 Score=128.95 Aligned_cols=68 Identities=26% Similarity=0.441 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||||++|||||+.+|++|||||||+|||+.++..+++.++ +.||++ .+||+..+.. |+++++.+
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii---~sh~~~~~~~~~d~~~~l~~ 157 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF---ISHRLDEVFEIADRVTVLRD 157 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999998888553 679999 4555554433 88887753
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=1.1e-18 Score=164.05 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=74.9
Q ss_pred HHHHHHHcCCCccc-----CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317 47 ISEILDTLGLQEHK-----TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD 115 (137)
Q Consensus 47 ~~~~L~~lgL~~~~-----~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~ 115 (137)
++++++.+||+++. ++.++.|||||||||+||++|+.+|++++|||||+|||+.++.++++.++ |.||+
T Consensus 312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi 391 (1470)
T PLN03140 312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL 391 (1470)
T ss_pred HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence 57799999998765 55678999999999999999999999999999999999999999988543 66999
Q ss_pred eeccccchhhhhhcCceEEecC
Q psy317 116 YTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+++|....-....-|+|++|++
T Consensus 392 is~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 392 MSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred EEecCCCHHHHHHhheEEEeeC
Confidence 9666443223334499999874
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.5e-18 Score=128.75 Aligned_cols=69 Identities=30% Similarity=0.503 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+|||||++|||||+.+|++|||||||+|||+.++..+++.+. +.+|+++||....+.. .|++++|.+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~~ 169 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVLDD 169 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEEcC
Confidence 99999999999999999999999999999999999998887554 5689996666666542 489998864
No 332
>KOG0059|consensus
Probab=99.76 E-value=1.1e-18 Score=157.88 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=97.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|.+|++.+...++.. +..+ ..+.++..++.+|+.+.++++++.+|||+|||+++|.|++.+|++++||
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~---~~~d--i~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD 723 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGL---PRSD--IGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD 723 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCC---ChhH--HHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence 4578899999999987655422 2223 5667899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEe
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~ 135 (137)
|||+|+||.+++.+++... +..|++ |+|.|++|=. +|+.++
T Consensus 724 EPstGmDP~arr~lW~ii~~~~k~g~aiiL---TSHsMeE~EaLCtR~aIm 771 (885)
T KOG0059|consen 724 EPSTGLDPKARRHLWDIIARLRKNGKAIIL---TSHSMEEAEALCTRTAIM 771 (885)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHHhhhhhee
Confidence 9999999999998888433 348889 8888888876 776654
No 333
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.7e-18 Score=146.43 Aligned_cols=125 Identities=11% Similarity=0.195 Sum_probs=99.1
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
....++..+++.+|+.+...........-..+...+.++++.+.+++.. ..+.++.+||||+||||.|||.|+.+|++|
T Consensus 344 k~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL 423 (500)
T COG1129 344 KSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL 423 (500)
T ss_pred ccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEE
Confidence 3456889999999998872111111101111113457888999999964 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||.|+|..++.+|++.++ |.+|++ ...++.+.++ |||+++++
T Consensus 424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~---iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM---ISSELPELLGLSDRILVMRE 476 (500)
T ss_pred EECCCCcCcccchHHHHHHHHHHHHHCCCEEEE---EeCChHHHHhhCCEEEEEEC
Confidence 9999999999999999999665 789999 7889999998 99999864
No 334
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.4e-18 Score=133.52 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=97.8
Q ss_pred ccCCC-CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----
Q psy317 9 SIWDS-MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN---- 83 (137)
Q Consensus 9 ~~~~~-l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~---- 83 (137)
+|+.. +-+.+||.|.+.++.-.+.... +-.+..+.++++|...++..+..+-+..|||||||||.+||.|++
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~---~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGR---EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCC---CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 44443 3455899999999864332111 111145568899999999999999999999999999999999976
Q ss_pred --CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 84 --NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 84 --~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
.+++|+||||||+||...+..+++..+ |..|.. ..||+-.|.. ||++++.+
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~---VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA---VLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEE---EEccchHHHHhhheeeeeeC
Confidence 456999999999999999999998765 667887 7899999988 99988753
No 335
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=2.5e-18 Score=162.05 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=81.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~IA 78 (137)
++...+.+-|++||+.++... .++++.++++..++. ........+||||||||++||
T Consensus 685 ~Q~p~Lf~gTIreNI~fg~~~------------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 685 PQVSWIFNATVRENILFGSDF------------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred cCccccccccHHHHhhcCCcc------------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 455556678999999987421 112333444444442 233445678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+.++|+|+|||||||+||+.....+++.. .+.|+++.||..+-+.. .|++++|.|
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~--aD~Ii~L~~ 814 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL--MDRIILVSE 814 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh--CCEEEEEeC
Confidence 9999999999999999999999888777642 46799996655543332 288888864
No 336
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=6.1e-19 Score=131.30 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=89.4
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
++.+||.++|.+|+.|..-.. ..... .++.+...|+++|+....++-|.+||||||.||++-|+|...|+.++|
T Consensus 85 D~lLFphlsVg~Nl~fAlp~~----~KG~a--Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 85 DALLFPHLSVGQNLLFALPAT----LKGNA--RRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred ccccccccccccceEEecCcc----cccHH--HHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 567899999999998763211 11112 445678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHH----hhc--cceeeeeccccchhhhhhcCceE
Q psy317 91 DEPTSPLHKAEFTPKYE----RKV--DTKVDYTGNRTQNLQQTIRNEVC 133 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~----~~~--~~~v~~~~~~~~~~~~~~~~~~~ 133 (137)
|||+|.||..-+.++-+ +.+ |+-.+++||..+|+. .+.|||
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp--agsrVi 205 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP--AGSRVI 205 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCeee
Confidence 99999999998887766 333 666667455544444 236766
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.75 E-value=3.5e-18 Score=160.74 Aligned_cols=91 Identities=24% Similarity=0.356 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---
Q psy317 45 CFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--- 110 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--- 110 (137)
+.+.++++.+++.+. .+..+..||||||||++|||||+++|+||||||||++||+.+...+.+.+.
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 456777777777544 345678999999999999999999999999999999999999998877443
Q ss_pred ---cceeeeeccccchhhhhhcCceEEecC
Q psy317 111 ---DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 111 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|.|+++.||+.+.+. ..|+++++++
T Consensus 627 ~~~g~TvIiIsHrls~i~--~aD~Iivl~~ 654 (1466)
T PTZ00265 627 GNENRITIIIAHRLSTIR--YANTIFVLSN 654 (1466)
T ss_pred hcCCCEEEEEeCCHHHHH--hCCEEEEEeC
Confidence 579999555554331 2399999864
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.75 E-value=5.2e-18 Score=145.83 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cc
Q psy317 44 SCFISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DT 112 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~ 112 (137)
++.+.+.++.+++....+.. ..+||||||||++||||++++|++|||||||++||+.+...+++.+. +.
T Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34667788888887654321 46899999999999999999999999999999999999998876542 67
Q ss_pred eeeeeccccchhhhhhcCceEEecC
Q psy317 113 KVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 113 ~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|+++.||+.+-+. ..|+++++.+
T Consensus 502 tvi~itH~~~~~~--~~d~i~~l~~ 524 (547)
T PRK10522 502 TIFAISHDDHYFI--HADRLLEMRN 524 (547)
T ss_pred EEEEEEechHHHH--hCCEEEEEEC
Confidence 9999777654332 2388888764
No 339
>KOG0055|consensus
Probab=99.75 E-value=5.4e-18 Score=155.19 Aligned_cols=113 Identities=22% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHH-----HHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCF-----ISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPP 86 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~-----~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~ 86 (137)
.+...|++||+.++..- . +..+ ..+. +.+.+..+ |++.....+..+||||||||++|||||+.+|+
T Consensus 437 vlF~~tI~eNI~~G~~d----a-t~~~--i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ 509 (1228)
T KOG0055|consen 437 VLFATTIRENIRYGKPD----A-TREE--IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK 509 (1228)
T ss_pred hhhcccHHHHHhcCCCc----c-cHHH--HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence 56679999999987421 0 0001 1111 11122221 44445556667799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317 87 IMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
|||||||||+||+.+...+-+.+. |.|-++ .+|.+.+-.. |.++++.
T Consensus 510 ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv---VaHRLStIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 510 ILLLDEATSALDAESERVVQEALDKASKGRTTIV---VAHRLSTIRNADKIAVME 561 (1228)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE---EeeehhhhhccCEEEEEE
Confidence 999999999999999887666544 556666 4555554444 7777765
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.75 E-value=3.7e-18 Score=124.08 Aligned_cols=71 Identities=27% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+. +.+|++ .+|+...+.. |+++++.+
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~---~th~~~~~~~~~d~v~~l~~ 142 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVIL---VSHDRYFLDQVATKIIELED 142 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhCCEEEEEeC
Confidence 34599999999999999999999999999999999999999988766 568999 5566666544 89988864
No 341
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=7.7e-18 Score=159.20 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHH-HHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGS-CFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~-~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+.|+++|+.++.... .... .+ ..+ ..+.+.++.+ |+....++++.+||||||||++|||||+.+|+++|||
T Consensus 732 l~~~Tv~enI~~~~~~~-~~~~--~~-~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 732 IMNATVRGNILFFDEED-AARL--AD-AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred cCCCcHHHHHHcCChhh-HHHH--HH-HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 34679999999763211 0000 00 011 2344556666 7777778889999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhcCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||++||+.....+++. ..|.|+++.||..+.+.. .|++++|.+
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~--ad~ii~l~~ 856 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR--ADYVVALGD 856 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence 99999999988777653 347799996655555432 299998864
No 342
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.75 E-value=3.7e-18 Score=129.66 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=60.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceE
Q psy317 62 TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVC 133 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~ 133 (137)
+.+..|||||+||++|||||+.+|+++||||||+|||+.++..+++.+. +.||+++|| ++..+. .|+++
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh---~~~~~~~~~~d~i~ 176 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH---YQRLLDYIKPDRVH 176 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec---CHHHHHHhhCCEEE
Confidence 3447899999999999999999999999999999999999998888543 679999555 455544 48888
Q ss_pred EecC
Q psy317 134 LISD 137 (137)
Q Consensus 134 ~~~~ 137 (137)
+|.+
T Consensus 177 ~l~~ 180 (200)
T cd03217 177 VLYD 180 (200)
T ss_pred EEEC
Confidence 8753
No 343
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=6.9e-18 Score=145.45 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCCcccCcc------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------cc
Q psy317 44 SCFISEILDTLGLQEHKTTM------TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VD 111 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~------~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~ 111 (137)
++++.+.++.+++.+..++. ..+||||||||++||||++.+|+++||||||++||+.+...+++.+ .+
T Consensus 442 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 521 (555)
T TIGR01194 442 LDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG 521 (555)
T ss_pred HHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34567789999998765443 3579999999999999999999999999999999999999886532 37
Q ss_pred ceeeeeccccchhhhhhcCceEEecC
Q psy317 112 TKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 112 ~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
.|+++.||+.+-+. ..|++++|.+
T Consensus 522 ~tiiiisH~~~~~~--~~d~i~~l~~ 545 (555)
T TIGR01194 522 KTIIIISHDDQYFE--LADQIIKLAA 545 (555)
T ss_pred CEEEEEeccHHHHH--hCCEEEEEEC
Confidence 79999666654322 2399988854
No 344
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=8.3e-18 Score=159.41 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=81.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-----------cccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-----------EHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-----------~~~~~~~~~LSgGqkqrv~IA 78 (137)
++...+.+-|++||+.++... .++++.++++..++. ........+||||||||++||
T Consensus 685 ~Q~p~LfngTIreNI~fg~~~------------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 685 PQVSWIFNATVRDNILFGSPF------------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred cCccccCCCCHHHHHhCCCcc------------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 455556678999999987421 112333444444442 233455678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||+.++|+|+|||||||+||+.....+++. +.+.|+++.||..+-+.+ .|+|++|.|
T Consensus 753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~--aD~Ii~L~~ 814 (1622)
T PLN03130 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ--VDRIILVHE 814 (1622)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh--CCEEEEEeC
Confidence 999999999999999999999988777653 346799995555543332 289988864
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=6e-18 Score=159.47 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=83.4
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|+++|+..+.. . .++++.+.++..++ +........+||||||||++|
T Consensus 1315 VpQdp~LF~gTIr~NL~~~~~-----~-------sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1315 IPQSPVLFSGTVRFNIDPFSE-----H-------NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred ECCCCeeeCccHHHHcCCCCC-----C-------CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 356665666799999986421 0 11234444555544 333445567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++|+|||||||||+||+.+...+.+.++ +.||++.+|+.+-+.. .|++++|.+
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~--~DrIlVL~~ 1444 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID--CDKILVLSS 1444 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh--CCEEEEEEC
Confidence 999999999999999999999999887776544 6799996666644433 299998864
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=7.6e-18 Score=127.01 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||||||++||||++.+|+++||||||+|||+.++..+.+.+. +.+|++ .+||+..+.. |+++++.+
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii---vsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV---VEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE---EECCHHHHHHhCCEEEEEcC
Confidence 99999999999999999999999999999999999987777543 378999 6666666654 88888764
No 347
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-17 Score=126.67 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=83.8
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
.+.+-+.+|++||+.|...++.. . ....+.+.++.|||....|.+++.||.||||||+|||-++..+++.||
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~------~--~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGS------G--NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCC------C--chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 34566789999999986543321 1 234677889999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT 121 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~ 121 (137)
||||++||......+-..+. |.-|+.|||-.
T Consensus 155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 99999999999976655433 66777877754
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=1.2e-17 Score=158.32 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=84.1
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|+++|+..+... .++.+.+.++..++ +........+||||||||++|
T Consensus 1318 VpQdp~LF~GTIreNLd~~~~~------------tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1318 IPQAPVLFSGTVRFNLDPFNEH------------NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred ECCCCccccccHHHHhCcCCCC------------CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 4566666677999999764210 11234445555444 333444567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++|+|||||||||+||+.+...+.+.++ +.||++.+|+.+-+..+ |++++|.+
T Consensus 1386 ARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~--DrIlVLd~ 1447 (1622)
T PLN03130 1386 ARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC--DRILVLDA 1447 (1622)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC--CEEEEEEC
Confidence 999999999999999999999999888877554 57999966666554432 99998864
No 349
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=2.4e-17 Score=129.10 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=85.1
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--------------------cccCccCCCCCHHHH
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--------------------EHKTTMTSNLSGGQK 72 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--------------------~~~~~~~~~LSgGqk 72 (137)
.+.+.+||.+++..+........ .... ..+++.++|+.+|+. +..++++.+||+|||
T Consensus 96 ~~~~~ltV~r~I~~~~~~~~~in-~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~ 172 (251)
T cd03273 96 ENYPEITVTRQIVLGGTNKYLIN-GHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQR 172 (251)
T ss_pred cCCceEEEEEEEEcCCceEEEEC-CEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHH
Confidence 34567788777755421110000 0112 346788899999986 445688999999999
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceE
Q psy317 73 KRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVC 133 (137)
Q Consensus 73 qrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~ 133 (137)
||++||+||+ .+|+++|+||||++||+.++..+++.+. |.+|+++||..+-+.. .|+++
T Consensus 173 qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~--~d~v~ 239 (251)
T cd03273 173 SLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN--ANVLF 239 (251)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh--CCEEE
Confidence 9999999998 5789999999999999999998888554 6689998888554443 36665
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.73 E-value=1.9e-17 Score=156.30 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=81.2
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH--HHHHHHHHc-----CCCcccCccCCCCCHHHHHHHHHHHHHhc
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC--FISEILDTL-----GLQEHKTTMTSNLSGGQKKRLSIALELVN 83 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~l-----gL~~~~~~~~~~LSgGqkqrv~IArAL~~ 83 (137)
+...+.+.|+++|+.++.... .. . .++ .+.++.+.+ |.....+.++.+||||||||++||||++.
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~--~~----~--~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALN--EK----Y--YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred CCccccCCcHHHHhhcCCccC--HH----H--HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 333345689999999864211 00 0 111 111112222 22234567789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc-------cceeeeeccccchhhhhhcCceEEecC
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV-------DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+|+++||||||++||+.....+++.+. +.|++++||..+.+.. .|+++++.+
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l~~ 836 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVMSG 836 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEecC
Confidence 999999999999999999999987653 5699996655554433 299988864
No 351
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73 E-value=1.8e-17 Score=126.38 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeee
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDY 116 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~ 116 (137)
+++.++++. .+..++++.+||||||||++||++++ .+|+++||||||+|||+..+..+++.+. +.+|++
T Consensus 95 ~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIi 171 (197)
T cd03278 95 GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIV 171 (197)
T ss_pred hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEE
Confidence 456677776 55678899999999999999999997 4679999999999999999998888554 568999
Q ss_pred eccccchhhhhhcCceEEec
Q psy317 117 TGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ 136 (137)
+||..+.+. ..|+++.+.
T Consensus 172 itH~~~~~~--~~d~v~~~~ 189 (197)
T cd03278 172 ITHRKGTME--AADRLYGVT 189 (197)
T ss_pred EECCHHHHh--hcceEEEEE
Confidence 665554332 238888764
No 352
>KOG0058|consensus
Probab=99.72 E-value=2e-17 Score=144.93 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=79.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNP 85 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P 85 (137)
..+++-|+.|||.++.. ... .++ ... -+.+.+..+ |.+...+.+..+||||||||++|||||+++|
T Consensus 551 PvLFs~sI~eNI~YG~~-~~t----~e~--i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 551 PVLFSGSIRENIAYGLD-NAT----DEE--IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred ceeecccHHHHHhcCCC-CCC----HHH--HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 34567899999999864 111 011 211 122334433 3444566778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhcCceEEe
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
.||||||.||+||..+...+-+.+ .+-||++-.|+..=++.| |++.++
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~A--d~Ivvi 675 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHA--DQIVVI 675 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhc--cEEEEE
Confidence 999999999999999877665543 367999866666655544 455444
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.72 E-value=4.8e-17 Score=153.38 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=80.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhH-HHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAG-SCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
++++ .|+++|+.++..... ... .. .. .....+.++.+... ...+.++.+||||||||++||||++.+|+++|
T Consensus 497 ~l~~-~Ti~eNI~~g~~~~~-~~~--~~-~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ill 571 (1490)
T TIGR01271 497 WIMP-GTIKDNIIFGLSYDE-YRY--TS-VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL 571 (1490)
T ss_pred ccCC-ccHHHHHHhccccch-HHH--HH-HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 4454 699999998742110 000 00 00 11123334443322 23466789999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhcCceEEec
Q psy317 90 FDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|||||+|||+.....+++.. .+.||+++||..+.+.. .|+++++.
T Consensus 572 LDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~--ad~ii~l~ 621 (1490)
T TIGR01271 572 LDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK--ADKILLLH 621 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh--CCEEEEEE
Confidence 99999999999999998742 37799996666555443 38998875
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.72 E-value=2.7e-17 Score=155.08 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=84.9
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+-|+++|+.... . . .++++.+.++.+|+.+... ....+||||||||++|
T Consensus 1297 IpQdp~LF~GTIR~NLdp~~-----~-----~--tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1297 IPQKVFIFSGTFRKNLDPYE-----Q-----W--SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred EeCCCccCccCHHHHhCccc-----C-----C--CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 46666666789999996321 0 1 1345566777777654322 2345799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++|+|||||||||+||+.+...+.+.++ +.||++.+|+.+.+.. -|+|++|.+
T Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~--~DrIlvL~~ 1426 (1490)
T TIGR01271 1365 ARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE--CQQFLVIEG 1426 (1490)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEEC
Confidence 999999999999999999999999888877655 5699996666544332 299998864
No 355
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.5e-17 Score=124.57 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccc------eee
Q psy317 43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT------KVD 115 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~------~v~ 115 (137)
+.+.+.+||+.+.++. ..|..|..+|||||||+.|||-|++.|+++++||||.|||...+..+++.++|. .+.
T Consensus 127 iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 127 IRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 5667888999999975 458899999999999999999999999999999999999999999999987754 666
Q ss_pred eeccccchhhhhhc--CceEEe
Q psy317 116 YTGNRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~ 135 (137)
+ .|||+..|.= +|..++
T Consensus 207 i---VTHDl~VarLla~rlmvm 225 (258)
T COG4107 207 I---VTHDLAVARLLADRLMVM 225 (258)
T ss_pred E---EechhHHHHHhhhcceee
Confidence 7 8999998865 555543
No 356
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.71 E-value=5.5e-17 Score=153.68 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=89.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHh---cCCCEEE
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELV---NNPPIMF 89 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~---~~P~iLl 89 (137)
.+...|+.|++.++..-.. . +.....+..+++ ++|+.+|+.+. .++++.+|||||+||++||+||+ .+|+++|
T Consensus 759 ~~~~~tI~evL~mtv~ea~-~-~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLI 835 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAE-K-FFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYV 835 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHH-H-cccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 4677899999988743111 1 111111144455 58999999886 79999999999999999999998 6999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|||||+|||+.++..+++.+. |.||++++|..+.+ ...|++++|.
T Consensus 836 LDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i--~~aDrVi~L~ 885 (1809)
T PRK00635 836 LDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV--KVADYVLELG 885 (1809)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HhCCEEEEEc
Confidence 999999999999998887543 77999955555444 1238998873
No 357
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=3.1e-17 Score=148.96 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=85.3
Q ss_pred CCCCHHHHHHhhhhhhhHHh---hhhc-chhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEE
Q psy317 16 PKKTPLTRMQISNGMMVLAA---MFNQ-SQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIM 88 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~---~~~~-~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iL 88 (137)
..++|.+.+.|...+..... .... -++..+++. .|+.+||.+. .++++.+|||||+|||.||+||+.+| +++
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll 513 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 513 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 45788888776443211100 0000 011344553 7889999876 79999999999999999999999997 999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
||||||+|||+..+..+++.+. |.||++++|..+.+. ..|+|++|
T Consensus 514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~--~aD~vi~L 563 (943)
T PRK00349 514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR--AADYIVDI 563 (943)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 9999999999999998888543 779999555544432 13999887
No 358
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=3.1e-17 Score=125.17 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc-------c-c
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV-------D-T 112 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~-~ 112 (137)
..+.++++. .+..++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+++.+. + .
T Consensus 91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~ 167 (198)
T cd03276 91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQ 167 (198)
T ss_pred HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcE
Confidence 456677776 6667889999999999999999999 59999999999999999999987777432 2 3
Q ss_pred eeeeeccccchhhhhhc-CceEEec
Q psy317 113 KVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 113 ~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
+|++ .+|++..+.. |+|-++-
T Consensus 168 ~iii---~th~~~~i~~~d~v~~~~ 189 (198)
T cd03276 168 FIFI---TPQDISGLASSDDVKVFR 189 (198)
T ss_pred EEEE---ECCcccccccccceeEEE
Confidence 7888 5677777777 8887763
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=4.9e-17 Score=153.82 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=84.0
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~I 77 (137)
-|+...+.+-|+++|+..+.. . .++++.+.++.+|+.+. ......+||||||||++|
T Consensus 1389 VpQdp~LF~gTIreNIdp~~~-----~-------sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1389 IPQDPVLFDGTVRQNVDPFLE-----A-------SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred ECCCCccccccHHHHhCcccC-----C-------CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 356666667799999964211 0 12345566666666443 233457899999999999
Q ss_pred HHHHhcC-CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNN-PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~-P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++ |+|||||||||+||+.+...+.+.+. +.||++.+|+.|-+.. .|+|++|.+
T Consensus 1457 ARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~--~DrIlVLd~ 1519 (1560)
T PTZ00243 1457 ARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ--YDKIIVMDH 1519 (1560)
T ss_pred HHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh--CCEEEEEEC
Confidence 9999995 89999999999999999888776543 6699996666655433 299988864
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=5.5e-17 Score=153.20 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=82.0
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~I 77 (137)
-|++..+.+-|+++|+..... . .++.+.+.++..|+ +........+||||||||++|
T Consensus 1365 VpQdp~LF~gTIr~NLdp~~~-----~-------sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~L 1432 (1522)
T TIGR00957 1365 IPQDPVLFSGSLRMNLDPFSQ-----Y-------SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCL 1432 (1522)
T ss_pred ECCCCcccCccHHHHcCcccC-----C-------CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHH
Confidence 466666666799999973211 0 11233444555544 333444557899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
||||+++|+|||||||||+||+.+...+.+.++ +.||++.+|+ +.-... |+|+++.+
T Consensus 1433 ARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHR---l~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR---LNTIMDYTRVIVLDK 1494 (1522)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC---HHHHHhCCEEEEEEC
Confidence 999999999999999999999999887776554 5699995554 444444 99998864
No 361
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=5.1e-17 Score=129.91 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeee
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDY 116 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~ 116 (137)
..++.+.+.+.++++...+.+++.||-|||.|+.||.||.++|++|+|||||-|||...+..+.+.++ +.||++
T Consensus 133 F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll 212 (325)
T COG4586 133 FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212 (325)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence 45678888999999999999999999999999999999999999999999999999999998877544 789999
Q ss_pred eccccchhhhhhcCceEEec
Q psy317 117 TGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ 136 (137)
|||.-.|+++ .-+||+.|+
T Consensus 213 TTH~~~di~~-lc~rv~~I~ 231 (325)
T COG4586 213 TTHIFDDIAT-LCDRVLLID 231 (325)
T ss_pred EecchhhHHH-hhhheEEee
Confidence 7777777653 337777764
No 362
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.5e-16 Score=144.18 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=71.5
Q ss_pred HHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317 49 EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR 120 (137)
Q Consensus 49 ~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~ 120 (137)
+.|..+||... .++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.+. |.||++++|.
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 35788899776 69999999999999999999999986 8999999999999999998888543 6799995555
Q ss_pred cchhhhhhcCceEEe
Q psy317 121 TQNLQQTIRNEVCLI 135 (137)
Q Consensus 121 ~~~~~~~~~~~~~~~ 135 (137)
.+.+. ..|+|++|
T Consensus 549 ~~~i~--~aD~vi~L 561 (924)
T TIGR00630 549 EETIR--AADYVIDI 561 (924)
T ss_pred HHHHh--hCCEEEEe
Confidence 54442 24999987
No 363
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.7e-16 Score=144.20 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE 92 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE 92 (137)
++|+.|++.+...+. . . .+..+.|+.+||.. ..++++.+|||||+||+.||++|+.+| +++||||
T Consensus 791 ~ltv~E~l~~f~~~~--------~--i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE 859 (943)
T PRK00349 791 DMTVEEALEFFEAIP--------K--I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE 859 (943)
T ss_pred cCcHHHHHHHHHhch--------h--h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC
Confidence 478888887643211 1 2 23457899999986 478999999999999999999999999 9999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
||+|||+..+..+++.+. |.||++++|..+.+. ..|+++.|
T Consensus 860 PtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~--~aD~ii~L 905 (943)
T PRK00349 860 PTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK--TADWIIDL 905 (943)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH--hCCEEEEe
Confidence 999999999998877543 679999555555442 23888877
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.69 E-value=7.1e-17 Score=139.19 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeeeeccc
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~~~~~ 120 (137)
+.++..+|..+|+... ++++++||||||.||++|+||..+|++|||||||+.||..+..++-+.+. | ||++.||.
T Consensus 132 e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHD 209 (530)
T COG0488 132 EARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHD 209 (530)
T ss_pred HHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 3577888999999877 99999999999999999999999999999999999999999999988775 5 89995654
Q ss_pred cc
Q psy317 121 TQ 122 (137)
Q Consensus 121 ~~ 122 (137)
-|
T Consensus 210 R~ 211 (530)
T COG0488 210 RY 211 (530)
T ss_pred HH
Confidence 33
No 365
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.69 E-value=9.3e-17 Score=123.18 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=66.2
Q ss_pred HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD 115 (137)
Q Consensus 51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~ 115 (137)
+...++....++++.+||+|||||++||+|++. +|+++||||||++||+..+..+.+.+. +.||+
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii 187 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG 187 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 455557778899999999999999999999985 578999999999999999998876433 66999
Q ss_pred eeccccchhhhhhc--CceEEec
Q psy317 116 YTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
++||. +..+.. ++++++.
T Consensus 188 ~itH~---~~~~~~~~~~i~~~~ 207 (213)
T cd03279 188 VISHV---EELKERIPQRLEVIK 207 (213)
T ss_pred EEECc---hHHHHhhCcEEEEEe
Confidence 95554 444444 7777664
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.2e-16 Score=116.77 Aligned_cols=68 Identities=32% Similarity=0.437 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+||+||++||+|++.+|++++|||||+|||+.++..+.+.+. +.+++++ +|++..... |+++++++
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~---sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV---THDPELAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999998888544 3689994 555555444 88888764
No 367
>KOG0055|consensus
Probab=99.68 E-value=1.5e-16 Score=145.84 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=77.0
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHH-----HHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFI-----SEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~ 84 (137)
...+.+-|++||+.+|.. .. +..+ ..+.+ -+.+..+ |++.....+..+||||||||++||||++++
T Consensus 1072 EP~LF~~TIrENI~YG~~-~v----s~~e--Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1072 EPVLFNGTIRENIAYGSE-EV----SEEE--IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred CchhhcccHHHHHhccCC-CC----CHHH--HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 344567899999998821 11 1111 22111 1122222 444455667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|+||||||.||+||..+.+.+=+.+. |.|-++..|+..-|+-| |.++++.
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqna--D~I~Vi~ 1198 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNA--DVIAVLK 1198 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcC--CEEEEEE
Confidence 99999999999999998765544333 55677766777655543 4555543
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.68 E-value=1.7e-16 Score=123.09 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=63.1
Q ss_pred cCCCcccCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhh
Q psy317 54 LGLQEHKTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 54 lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~ 125 (137)
+++....++++..||||||||++||+|++. +|+++|+||||+|||+..+..+++.+. +.+|++++|..+ +.
T Consensus 146 ~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~ 224 (243)
T cd03272 146 TNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LL 224 (243)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH
Confidence 344445678899999999999999999973 689999999999999999998887544 456777666633 22
Q ss_pred hhhcCceEEec
Q psy317 126 QTIRNEVCLIS 136 (137)
Q Consensus 126 ~~~~~~~~~~~ 136 (137)
...|++++|+
T Consensus 225 -~~~d~i~~l~ 234 (243)
T cd03272 225 -EVADKFYGVK 234 (243)
T ss_pred -hhCCEEEEEE
Confidence 2348888874
No 369
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.1e-16 Score=140.82 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317 46 FISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVN---NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY 116 (137)
Q Consensus 46 ~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~---~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~ 116 (137)
+..++|+.+||.. ..++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.+. |.||++
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3457899999986 4789999999999999999999997 599999999999999999998887543 779999
Q ss_pred eccccchhhhhhcCceEEe
Q psy317 117 TGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~ 135 (137)
++|..+.+. ..|+++.|
T Consensus 887 i~H~~~~i~--~aD~ii~L 903 (924)
T TIGR00630 887 IEHNLDVIK--TADYIIDL 903 (924)
T ss_pred EeCCHHHHH--hCCEEEEe
Confidence 555555442 13888887
No 370
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=4.3e-16 Score=120.07 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=69.5
Q ss_pred HHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecc
Q psy317 48 SEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGN 119 (137)
Q Consensus 48 ~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~ 119 (137)
.++++.+++.+..++++..||+|||||++||+|++. +|+++++||||+|||+.++..+++.+. +.++++.||
T Consensus 109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~ 188 (212)
T cd03274 109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISL 188 (212)
T ss_pred CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 556778888888899999999999999999999974 589999999999999999998888554 457777665
Q ss_pred ccchhhhhhcCceEEec
Q psy317 120 RTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (137)
.. .+ ....|+++++.
T Consensus 189 ~~-~~-~~~~d~v~~~~ 203 (212)
T cd03274 189 RN-NM-FELADRLVGIY 203 (212)
T ss_pred cH-HH-HHhCCEEEEEE
Confidence 42 11 22239988874
No 371
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=1.6e-15 Score=118.76 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCCcc----------------------cCccCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCC
Q psy317 44 SCFISEILDTLGLQEH----------------------KTTMTSNLSGGQKKRLSIALELVNN----PPIMFFDEPTSPL 97 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~----------------------~~~~~~~LSgGqkqrv~IArAL~~~----P~iLlLDEPtsgL 97 (137)
.+.++++++.+|+... .++++..||+|||||++||+|++.+ |+++||||||+||
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 3456788888888421 1234589999999999999999875 8999999999999
Q ss_pred CHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 98 HKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 98 D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
|+..+..+.+.+. |.+|+++||..+-+ ...|+++++.
T Consensus 191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~--~~~d~i~~~~ 232 (247)
T cd03275 191 DNTNVGKVASYIREQAGPNFQFIVISLKEEFF--SKADALVGVY 232 (247)
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEEECCHHHH--hhCCeEEEEE
Confidence 9999987777443 56899966653322 2238988864
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=9e-16 Score=116.28 Aligned_cols=93 Identities=20% Similarity=0.331 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317 43 GSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY 116 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~ 116 (137)
...++..+|.++++.+. ..-.|.++|||+||||.|||+++.+=+||+|||||+.||..++..+.+.+. |..++
T Consensus 128 a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv- 206 (235)
T COG4778 128 ARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV- 206 (235)
T ss_pred HHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE-
Confidence 45678899999999764 477899999999999999999999999999999999999999998888655 44443
Q ss_pred eccccchhhhhhcCceEEec
Q psy317 117 TGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ 136 (137)
..--+++++++..||.+-.+
T Consensus 207 GIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 207 GIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred EeeccHHHHHHHhhheeecc
Confidence 22367788888888876543
No 373
>KOG0054|consensus
Probab=99.62 E-value=1.5e-15 Score=141.25 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=86.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~IA 78 (137)
|+.....+-|++|||.||..+ .+++.++.++...|+. ....+.-+||||||||+++|
T Consensus 588 ~Q~pWI~ngTvreNILFG~~~------------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSPY------------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred ccccHhhCCcHHHhhhcCccc------------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 444456678999999987421 2345555666555532 23557788999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-----hccceeeeeccccchhhhhhc-CceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYER-----KVDTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-----~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
||+-++.+|+|||.|+|++|......+++. ++++|+++ .||.++.-.. |.++++.|
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL---VTHql~~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL---VTHQLQFLPHADQIIVLKD 717 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE---EeCchhhhhhCCEEEEecC
Confidence 999999999999999999999999999984 55789999 5555655554 88887764
No 374
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=1.4e-15 Score=144.33 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=70.5
Q ss_pred HHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317 50 ILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT 121 (137)
Q Consensus 50 ~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~ 121 (137)
.|..+||... .++.+.+|||||+||+.||+||+.+| +++||||||+|||+..+..+++.+. |.||++ .+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIv---Ve 535 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL---VE 535 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEE---Ee
Confidence 4667899876 68999999999999999999999999 8999999999999999998877544 779999 55
Q ss_pred chhhhhh-cCceEEec
Q psy317 122 QNLQQTI-RNEVCLIS 136 (137)
Q Consensus 122 ~~~~~~~-~~~~~~~~ 136 (137)
||+.... .|+|++|.
T Consensus 536 Hd~~vi~~aDrVi~L~ 551 (1809)
T PRK00635 536 HDEQMISLADRIIDIG 551 (1809)
T ss_pred CcHHHHHhCCEEEEEc
Confidence 5555222 29999884
No 375
>KOG0065|consensus
Probab=99.60 E-value=4.5e-16 Score=143.22 Aligned_cols=110 Identities=26% Similarity=0.355 Sum_probs=91.6
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC----CCHHHHHHHHHHHHHhcCC-
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN----LSGGQKKRLSIALELVNNP- 85 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~----LSgGqkqrv~IArAL~~~P- 85 (137)
++-+.+.+||+|.+.+...++.....+.++ ..+.++++++.++|+++++..++. ||..||||+.||--|+.+|
T Consensus 872 ~DiH~~~~TVrESL~fSA~LRlp~~v~~~e--k~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 872 QDIHSPELTVRESLRFSAALRLPKEVSDEE--KYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred ccccCcccchHHHHHHHHHHcCCCcCCHHH--HHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 345678999999999988766433222222 457899999999999888887766 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ 122 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~ 122 (137)
-||+|||||||||..+.-.+++.++ |-+|+-|.|-+.
T Consensus 950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred eeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 9999999999999999998888766 669998888664
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.58 E-value=2.1e-15 Score=107.04 Aligned_cols=52 Identities=42% Similarity=0.709 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCcccCccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy317 44 SCFISEILDTLGLQEHKTTMT----SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~----~~LSgGqkqrv~IArAL~~~P~iLlLDEPts 95 (137)
..++.++++.+++....++.+ ..||+|||||++||+||+.+|+++|||||||
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345777888888876555555 9999999999999999999999999999997
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.58 E-value=4.2e-15 Score=113.80 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred CccCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHhHH-HHHHhhc------cceeeeeccccchhhhh
Q psy317 61 TTMTSNLSGGQKKR------LSIALELVNNPPIMFFDEPTSPLHKAEFT-PKYERKV------DTKVDYTGNRTQNLQQT 127 (137)
Q Consensus 61 ~~~~~~LSgGqkqr------v~IArAL~~~P~iLlLDEPtsgLD~~~~~-~i~~~~~------~~~v~~~~~~~~~~~~~ 127 (137)
++++..||+||+|| ++||+|++.+|+++|+||||++||+..+. .+.+.+. +.+|+++||..+.+.
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-- 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-- 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh--
Confidence 77899999999996 78999999999999999999999999988 7776442 568999776544332
Q ss_pred hcCceEEec
Q psy317 128 IRNEVCLIS 136 (137)
Q Consensus 128 ~~~~~~~~~ 136 (137)
..|+++.|.
T Consensus 188 ~~d~i~~l~ 196 (204)
T cd03240 188 AADHIYRVE 196 (204)
T ss_pred hCCEEEEEe
Confidence 238888774
No 378
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=6.9e-15 Score=126.94 Aligned_cols=107 Identities=23% Similarity=0.332 Sum_probs=84.5
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
++.|+.+++.-.. . .. .+..+...|..|++.. ...++++.||||||.|+.+|+.++.+|-+|||||||
T Consensus 399 ~~~t~~d~l~~~~-----~----~~--~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 399 PDKTVLEELSEGF-----P----DG--DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred ccCcHHHHHHhhC-----c----cc--cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 5567777775321 0 11 2456788999999964 468899999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEec
Q psy317 95 SPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+.||..+++.+-+.+. ..||+++ .||=.+.-+ ++++++.
T Consensus 468 NhLDi~s~~aLe~aL~~f~Gtvl~V---SHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 468 NHLDIESLEALEEALLDFEGTVLLV---SHDRYFLDRVATRIWLVE 510 (530)
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEE---eCCHHHHHhhcceEEEEc
Confidence 9999999999988877 5699994 455555444 7777664
No 379
>KOG0062|consensus
Probab=99.54 E-value=1.8e-14 Score=122.89 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
.+.+.++|..+|+.... .++.++||||.|-|+++||||..+||||||||||+.||..+..++-+.+. ..|++++||.
T Consensus 175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHD 254 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHD 254 (582)
T ss_pred HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEecc
Confidence 34455589999997655 67789999999999999999999999999999999999999999999887 6689997764
No 380
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.53 E-value=6.8e-14 Score=119.39 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=81.2
Q ss_pred hccCCCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317 8 SSIWDSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 8 ~~~~~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~ 84 (137)
-.|++.-++.=|+.|||.=+. ........ +.+....+.++.-.+ |.+.....-...||||||||+++||||..+
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIi---eAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGEEADPEKVI---EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred cCcccceecCCcHHHHHHhccccCCHHHHH---HHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 356666566789999996221 11000000 000011122333322 233333444577999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH-----hhccceeeeeccccchhhhhhcCceEEecC
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYE-----RKVDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|.+++||||-|+||......+.+ +.+|.++++.+|+..-++.+ |.|.+++|
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~--Dkilvl~~ 546 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV--DKILVLQD 546 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc--ceeeeecC
Confidence 99999999999999999887777 34588999988887655433 66666654
No 381
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-13 Score=108.27 Aligned_cols=126 Identities=21% Similarity=0.145 Sum_probs=93.5
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccC-CCCCHHHHHHHHHHHHHhcCCCE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMT-SNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~-~~LSgGqkqrv~IArAL~~~P~i 87 (137)
-.|.=++..++.+.+..+............+ ..+++++.++.+++.. .++|.+ ..+|||+|+|.+|+..++.+|++
T Consensus 88 Q~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl 165 (251)
T COG0396 88 QYPVEIPGVTNSDFLRAAMNARRGARGILPE--FIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL 165 (251)
T ss_pred cCCccCCCeeHHHHHHHHHHhhhccccccHH--HHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE
Confidence 3445567777777777654321111000012 4668889999999986 678887 56999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
.|||||-||||..+.+.+.+-.+ +.++++-||+..=+.....|.|.++-|
T Consensus 166 ~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~ 220 (251)
T COG0396 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYD 220 (251)
T ss_pred EEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEEC
Confidence 99999999999999987766332 668999777776666666688887753
No 382
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=4.2e-14 Score=108.50 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCC-CcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceee
Q psy317 43 GSCFISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVD 115 (137)
Q Consensus 43 ~~~~~~~~L~~lgL-~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~ 115 (137)
..+++.+.|+.+|+ .++++-+|..||.||||||++||||+.+|+|+|.||..++||...+.++.+..- |..-+
T Consensus 125 R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyi 204 (267)
T COG4167 125 RRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEE
Confidence 45688899999998 578899999999999999999999999999999999999999999999888432 55666
Q ss_pred eeccccchhhhhhc--CceEEe
Q psy317 116 YTGNRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~ 135 (137)
| +++++..-+- |.|++.
T Consensus 205 Y---V~QhlG~iKHi~D~viVM 223 (267)
T COG4167 205 Y---VTQHIGMIKHISDQVLVM 223 (267)
T ss_pred E---EechhhHhhhhcccEEEE
Confidence 7 4555554443 555554
No 383
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=5.8e-14 Score=110.48 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=97.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
-.+-|++|.+||+.+...+. ++...+ .+++++++.+--+|.++.+.|+.++|.||+-|+++|.|...+|+|||+|
T Consensus 98 ~Gf~pelTGreNi~l~~~~~---G~~~~e--i~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD 172 (249)
T COG1134 98 AGFDPELTGRENIYLRGLIL---GLTRKE--IDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172 (249)
T ss_pred cCCCcccchHHHHHHHHHHh---CccHHH--HHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe
Confidence 34678999999998764332 222334 7788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|-.+.-|+.-+++-.+++ .+.||++ ..||++...+ |+++.|+
T Consensus 173 EvlavGD~~F~~K~~~rl~e~~~~~~tiv~---VSHd~~~I~~~Cd~~i~l~ 221 (249)
T COG1134 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVL---VSHDLGAIKQYCDRAIWLE 221 (249)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCEEEE---EECCHHHHHHhcCeeEEEe
Confidence 999999998877555533 3668889 7788888888 8888876
No 384
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=2.9e-14 Score=110.00 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=62.1
Q ss_pred cccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------c-ceeeeec-cccchhh
Q psy317 58 EHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV------D-TKVDYTG-NRTQNLQ 125 (137)
Q Consensus 58 ~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~-~~v~~~~-~~~~~~~ 125 (137)
+..+..+.+||+||||++.+++++ +.+|+++|+||||+|||+..+..+++.+. | .++++.| |..|++.
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 345667899999999998877554 58999999999999999999998887542 2 3577755 4456666
Q ss_pred hhhcCceEEecC
Q psy317 126 QTIRNEVCLISD 137 (137)
Q Consensus 126 ~~~~~~~~~~~~ 137 (137)
.+-+.+|++|++
T Consensus 198 ~~~~~~v~~l~~ 209 (213)
T cd03277 198 YHEKMTVLCVYN 209 (213)
T ss_pred ccCceEEEEEec
Confidence 665578888864
No 385
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.47 E-value=1.9e-13 Score=102.84 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEec
Q psy317 67 LSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 67 LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
||+|||||++||++++ .+|+++|+|||+++||+..+..+.+.+. +.+++++||..+.+. ..|+++.|.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~--~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE--NADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh--hCCeEEEEE
Confidence 9999999999999996 6999999999999999999998877544 468999777655442 248888764
No 386
>KOG0927|consensus
Probab=99.46 E-value=1.5e-13 Score=117.87 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cc-eeeeec
Q psy317 43 GSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DT-KVDYTG 118 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~-~v~~~~ 118 (137)
.+.++.++|..+|.. +..++.+.+||||++.|+++||+|..+|++|+|||||++||+.+...+-+.+. +. ++.+++
T Consensus 197 ~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~s 276 (614)
T KOG0927|consen 197 FEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVS 276 (614)
T ss_pred HHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEe
Confidence 345677788888864 56689999999999999999999999999999999999999999998888766 22 566766
Q ss_pred cc
Q psy317 119 NR 120 (137)
Q Consensus 119 ~~ 120 (137)
|.
T Consensus 277 h~ 278 (614)
T KOG0927|consen 277 HS 278 (614)
T ss_pred cc
Confidence 65
No 387
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.45 E-value=2.5e-13 Score=116.57 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHhHHHHHHhhc---cceeeeeccccchhhhh
Q psy317 62 TMTSNLSGGQKKRLSIALELV----------NNPPIMFFDEPT-SPLHKAEFTPKYERKV---DTKVDYTGNRTQNLQQT 127 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~ 127 (137)
..+..|||||+||++||+||+ .+|+++|||||| ++||+..+..+++.+. +.+|+++||..+....
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~- 542 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK- 542 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh-
Confidence 357899999999999999988 599999999998 7899999998877554 5689998888554432
Q ss_pred hcCceEEec
Q psy317 128 IRNEVCLIS 136 (137)
Q Consensus 128 ~~~~~~~~~ 136 (137)
.++++.+.
T Consensus 543 -~d~~~~l~ 550 (562)
T PHA02562 543 -FDRHLKME 550 (562)
T ss_pred -hhcEEEEE
Confidence 27777664
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.45 E-value=2.6e-13 Score=115.19 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=97.0
Q ss_pred CCCCCCCCCHHHHHHhhhhhhh--HHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMV--LAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
...+.+.+|+.+|+.+...... .....-...+..+.+.++++.|++. .-...++.+||||++||+-+||-|.++|++
T Consensus 345 ~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 345 GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred cCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCE
Confidence 4457889999999988753210 0000011122667889999999996 345677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||+-+||-|||..+.+.+.+++. |..|++ ...|+++... ||+.++++
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLL---iS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEE---EehhHHHHHHhhheeeeeeC
Confidence 99999999999999998888655 779998 6677777777 99988864
No 389
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-13 Score=114.82 Aligned_cols=119 Identities=21% Similarity=0.272 Sum_probs=78.8
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL 81 (137)
-|++..+++-|.+.|+.++..-. +.++ ... .+....+.+ |++.....+.-.|||||||||+|||++
T Consensus 342 VPQDtvLFNDti~yni~ygr~~a-----t~ee--v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~i 414 (497)
T COG5265 342 VPQDTVLFNDTIAYNIKYGRPDA-----TAEE--VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred CcccceehhhhHHHHHhccCccc-----cHHH--HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHH
Confidence 46777888889999998764211 0011 111 111222221 233334445566999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
..+|+||+|||.||+||..+.+.+-..++ |-|-++- -|-+.-..+ |++++|++
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvi---ahrlsti~~adeiivl~~ 472 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI---AHRLSTIIDADEIIVLDN 472 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEE---eehhhhccCCceEEEeeC
Confidence 99999999999999999999887776555 4455553 344443344 88888764
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.45 E-value=2.3e-13 Score=118.51 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=87.0
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc------CCCCCHHHHHHHHHHHHHh
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM------TSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~------~~~LSgGqkqrv~IArAL~ 82 (137)
.|+...+|.=|.+|-+.++.... .. .++.+.++|..+||++..++. -..||+|||||+++||.|.
T Consensus 461 lpQ~PY~p~GtLre~l~YP~~~~-------~~--~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 461 LPQRPYLPQGTLREALCYPNAAP-------DF--SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred ecCCCCCCCccHHHHHhCCCCCC-------CC--ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 45556667778888887653211 01 245678899999998765443 3569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhh
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~ 128 (137)
++|++++|||.|++||+.+...+++.++ +.||+..+|++.--++.-
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHS 581 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHh
Confidence 9999999999999999999999999776 569998899887655543
No 391
>KOG0062|consensus
Probab=99.44 E-value=3.5e-13 Score=115.13 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317 43 GSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN 119 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~ 119 (137)
..+.+++-+..||+.. .+.....+||||||=||.+|.+...+|-+|+|||||+.||..+...+.+.++ +.+|.+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~--- 534 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVL--- 534 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEE---
Confidence 3466778899999975 4566689999999999999999999999999999999999999999888777 558888
Q ss_pred ccchhhhhhc--CceEEecC
Q psy317 120 RTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~ 137 (137)
.+||.++... .++++..|
T Consensus 535 VSHd~~fi~~~c~E~Wvve~ 554 (582)
T KOG0062|consen 535 VSHDEEFISSLCKELWVVED 554 (582)
T ss_pred EECcHHHHhhcCceeEEEcC
Confidence 6778888777 77777654
No 392
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=4.4e-13 Score=106.69 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317 65 SNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
..|||||+||+++|++++. +|+++|+||||++||+..+..+++.+. +.+++++||..+-+ ...|+++.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~--~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA--AMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH--HhcCcEEEEE
Confidence 3499999999999997654 999999999999999999998887554 56899977665522 2337777764
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=1.1e-13 Score=108.35 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCccc---CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccce
Q psy317 43 GSCFISEILDTLGLQEHK---TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTK 113 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~---~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~ 113 (137)
.+.++-++|.++|+.+.. ..+|.+|.-|+.|+|+||.|++.+|++||.||||+++++..+.++++.+ .+.+
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt 211 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT 211 (330)
T ss_pred hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence 345778899999998765 5789999999999999999999999999999999999999999998843 3779
Q ss_pred eeeeccccchhhhhh
Q psy317 114 VDYTGNRTQNLQQTI 128 (137)
Q Consensus 114 v~~~~~~~~~~~~~~ 128 (137)
|+++||....+.+-.
T Consensus 212 ILL~s~Dl~~is~W~ 226 (330)
T COG4170 212 ILLISHDLQMISQWA 226 (330)
T ss_pred EEEEcccHHHHHHHh
Confidence 999887777666543
No 394
>KOG0927|consensus
Probab=99.42 E-value=2.4e-13 Score=116.62 Aligned_cols=81 Identities=25% Similarity=0.311 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
.+.++.+|.++||.. ....+.++||.|||+||.+|+.++..|.+|+|||||+|||..+...+-+.++ ..+|.+ +
T Consensus 486 ~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~---v 562 (614)
T KOG0927|consen 486 LEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVL---V 562 (614)
T ss_pred HHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceee---e
Confidence 457888999999985 4577889999999999999999999999999999999999999998888887 447777 4
Q ss_pred cchhhhh
Q psy317 121 TQNLQQT 127 (137)
Q Consensus 121 ~~~~~~~ 127 (137)
.||+...
T Consensus 563 SHDfrlI 569 (614)
T KOG0927|consen 563 SHDFRLI 569 (614)
T ss_pred echhhHH
Confidence 5665543
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.38 E-value=8.8e-13 Score=111.82 Aligned_cols=87 Identities=26% Similarity=0.330 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR 120 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~ 120 (137)
..+++.+.++|.+..++-+++||||+.||++||.|++++.++.++|||+|.||...+....+..+ +.+|++ .
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViV---V 269 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV---V 269 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEE---E
Confidence 46778999999999999999999999999999999999999999999999999998875555333 568888 8
Q ss_pred cchhhhhhc--CceEEe
Q psy317 121 TQNLQQTIR--NEVCLI 135 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~ 135 (137)
.||++.-=- |-|+++
T Consensus 270 EHDLavLD~lsD~vhI~ 286 (591)
T COG1245 270 EHDLAVLDYLSDFVHIL 286 (591)
T ss_pred echHHHHHHhhheeEEE
Confidence 999875322 666654
No 396
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.2e-12 Score=113.69 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEe
Q psy317 65 SNLSGGQKKRLSIALELVNN----PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~~----P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
..+||||+||++||++++.. |++||||||++|||+..+..+.+.+. +.+|+++| |+.+.+.. |+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iT---H~~~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVT---HLPQVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEE---ChHHHHHhcCeEEEE
Confidence 46899999999999999985 69999999999999999998887544 67899944 55544444 888887
Q ss_pred c
Q psy317 136 S 136 (137)
Q Consensus 136 ~ 136 (137)
.
T Consensus 516 ~ 516 (563)
T TIGR00634 516 E 516 (563)
T ss_pred E
Confidence 5
No 397
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1.5e-12 Score=119.56 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=61.9
Q ss_pred CcccCccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317 57 QEHKTTMTSNLSGGQKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT 121 (137)
Q Consensus 57 ~~~~~~~~~~LSgGqkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~ 121 (137)
....++++.+|||||++|++||+||+. +|++||+||||+|||+.+...+++.+. |.+|+++||.
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~- 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV- 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc-
Confidence 445567899999999999999999985 799999999999999999988877543 5688895554
Q ss_pred chhhhhhc--CceEEec
Q psy317 122 QNLQQTIR--NEVCLIS 136 (137)
Q Consensus 122 ~~~~~~~~--~~~~~~~ 136 (137)
.....+ +++.|+.
T Consensus 1020 --~~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1020 --PEFRERIPHRILVKK 1034 (1042)
T ss_pred --HHHHHhhCCEEEEEE
Confidence 444444 7887764
No 398
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=2.7e-12 Score=94.71 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 65 SNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
.+||+||+||+.+|++|+. +|+++|+|||++|+|+..+..+.+.+. +.+++++||..+....+ |+++.+
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l 153 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHI 153 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEE
Confidence 4699999999999999987 789999999999999999987766433 46889966655544322 777766
Q ss_pred c
Q psy317 136 S 136 (137)
Q Consensus 136 ~ 136 (137)
.
T Consensus 154 ~ 154 (162)
T cd03227 154 K 154 (162)
T ss_pred E
Confidence 4
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=1.3e-12 Score=110.84 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh---hc---cceeeeecc
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER---KV---DTKVDYTGN 119 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~---~~---~~~v~~~~~ 119 (137)
...++++-++|++..++++.+||||+.|||+||.||..+.++.+||||+|.||...+..+-.. .. +++.++
T Consensus 435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v--- 511 (591)
T COG1245 435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV--- 511 (591)
T ss_pred hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE---
Confidence 455788999999999999999999999999999999999999999999999999988654442 22 567788
Q ss_pred ccchhhhhhc--CceEEec
Q psy317 120 RTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~ 136 (137)
..||+-..-= ||+++.+
T Consensus 512 VdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 512 VDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecceehhhhhhceEEEEe
Confidence 8888755422 7777654
No 400
>PRK10869 recombination and repair protein; Provisional
Probab=99.31 E-value=5.9e-12 Score=109.33 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEec
Q psy317 66 NLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
.+||||+||++||++++. +|+++|+|||++|||......+.+.+. +.+|++.| |+.+.|.. |+.|+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iT---H~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVT---HLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEe---cCHHHHHhCCEEEEEe
Confidence 479999999999999997 589999999999999999998888655 45899944 45544434 8888775
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.29 E-value=2e-11 Score=108.91 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317 45 CFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD 115 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~ 115 (137)
.+..+.|..+||... +.++..+||||+-||+.+|.-|.... -+.||||||+||......++++-+. |.||+
T Consensus 800 ~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTVi 879 (935)
T COG0178 800 ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879 (935)
T ss_pred HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 455568889999874 58999999999999999999998877 9999999999999999988877443 77999
Q ss_pred eeccccchhhhhhc-CceE
Q psy317 116 YTGNRTQNLQQTIR-NEVC 133 (137)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~ 133 (137)
+ ..|||+..+. |.++
T Consensus 880 V---IEHNLdVIk~AD~II 895 (935)
T COG0178 880 V---IEHNLDVIKTADWII 895 (935)
T ss_pred E---EecccceEeecCEEE
Confidence 9 8999998776 6554
No 402
>KOG0056|consensus
Probab=99.28 E-value=3.2e-12 Score=109.52 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=75.4
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHH--HHHHHHHH-HcCCCcc----cCccCCCCCHHHHHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGS--CFISEILD-TLGLQEH----KTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~--~~~~~~L~-~lgL~~~----~~~~~~~LSgGqkqrv~IArAL 81 (137)
-|++..+.+-|+..|++++.- . . +.++ .. .++..+=+ .+++.+. ...+.=.||||+||||+|||++
T Consensus 617 VPQDtvLFNdTI~yNIryak~-~--A--snee--vyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKP-S--A--SNEE--VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred ccCcceeecceeeeheeecCC-C--C--ChHH--HHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 467778888999999987641 1 1 0011 21 12222322 2345443 3445566999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEec
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
..+|.|++|||.||+||-.+...|-..+. +-|-++..|+..-+.- .|.+.+|+
T Consensus 690 LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn--AD~ILvi~ 746 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN--ADLILVIS 746 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec--ccEEEEEe
Confidence 99999999999999999988776655443 3344444454432221 15555544
No 403
>PRK03918 chromosome segregation protein; Provisional
Probab=99.27 E-value=8.1e-12 Score=112.22 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=57.5
Q ss_pred CccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc
Q psy317 61 TTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 61 ~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~ 129 (137)
+.++..|||||++ |+++|++++.+|+++|+||||+|||+..+..+.+.+. +.+|+++||..+ +. ...
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~-~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LK-DAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HH-HhC
Confidence 3578899999999 5556668889999999999999999999988877542 468999666654 22 224
Q ss_pred CceEEec
Q psy317 130 NEVCLIS 136 (137)
Q Consensus 130 ~~~~~~~ 136 (137)
|+++.++
T Consensus 861 d~~~~l~ 867 (880)
T PRK03918 861 DYVIRVS 867 (880)
T ss_pred CeEEEEE
Confidence 8888764
No 404
>PRK01156 chromosome segregation protein; Provisional
Probab=99.27 E-value=2.6e-11 Score=109.69 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCc----------------ccCccCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHhHH
Q psy317 46 FISEILDTLGLQE----------------HKTTMTSNLSGGQKKRLSI------ALELVNNPPIMFFDEPTSPLHKAEFT 103 (137)
Q Consensus 46 ~~~~~L~~lgL~~----------------~~~~~~~~LSgGqkqrv~I------ArAL~~~P~iLlLDEPtsgLD~~~~~ 103 (137)
.+.+++..+|+.. .....+..|||||+++++| |++++.+|++++|||||+|||+..+.
T Consensus 765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~ 844 (895)
T PRK01156 765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT 844 (895)
T ss_pred HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence 4566777788741 1124688999999999975 58999999999999999999999988
Q ss_pred HHHHhhc-------c-ceeeeeccccchhhhhhcCceEEec
Q psy317 104 PKYERKV-------D-TKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 104 ~i~~~~~-------~-~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
.+.+.+. + .+|++.||..+-+. ..|+++.+.
T Consensus 845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~~--~~d~ii~~~ 883 (895)
T PRK01156 845 NLKDIIEYSLKDSSDIPQVIMISHHRELLS--VADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECchHHHH--hcCeEEEEE
Confidence 8766432 2 37999666665432 237777653
No 405
>KOG0054|consensus
Probab=99.25 E-value=1.9e-11 Score=114.25 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=80.3
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I 77 (137)
-|++....+=|++.|+--..... ++.+=+.|+..+ |+.....-..++|-||||.+|+
T Consensus 1219 IPQdPvLFsGTvR~NLDPf~e~s------------D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFDEYS------------DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCL 1286 (1381)
T ss_pred eCCCCceecCccccccCcccccC------------HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHH
Confidence 47778888899999996332111 112223333333 4444444568899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhccceeeeeccccchhhhhhc-CceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKVDTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
||||.++.+||+|||+||++|+.+-..|=+ ...+-||+- .-|-+.-.++ |||++|.+
T Consensus 1287 ARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt---IAHRl~TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1287 ARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT---IAHRLNTVMDSDRVLVLDA 1348 (1381)
T ss_pred HHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE---EeeccchhhhcCeEEEeeC
Confidence 999999999999999999999997544333 344669997 4455555677 99998863
No 406
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.6e-11 Score=115.12 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=54.6
Q ss_pred CccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----------ccceeeeeccccchh
Q psy317 61 TTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK----------VDTKVDYTGNRTQNL 124 (137)
Q Consensus 61 ~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----------~~~~v~~~~~~~~~~ 124 (137)
...++.|||||+| |++||+|++.+|++|+|||||+|||+.+...+.+.+ .|.+|+++||..+-+
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 3455899999999 999999999999999999999999999998765532 256899955555554
Q ss_pred hhhh
Q psy317 125 QQTI 128 (137)
Q Consensus 125 ~~~~ 128 (137)
....
T Consensus 1274 ~~~~ 1277 (1311)
T TIGR00606 1274 ELLG 1277 (1311)
T ss_pred HHHh
Confidence 4443
No 407
>KOG0066|consensus
Probab=99.23 E-value=2.1e-11 Score=103.70 Aligned_cols=77 Identities=29% Similarity=0.373 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCcccCc-cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317 45 CFISEILDTLGLQEHKTT-MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT 121 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~-~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~ 121 (137)
+.++..|-.+||..+++. .+..||||||-||++|---+..|++|||||||++||..+...+.+..+ ..+|+++||..
T Consensus 682 q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 682 QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEeccc
Confidence 456678899999888765 579999999999999999999999999999999999999999988777 55888855543
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.23 E-value=4.1e-12 Score=96.54 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=60.1
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hhc--cceeeeeccc
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RKV--DTKVDYTGNR 120 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~--~~~v~~~~~~ 120 (137)
+.+++..++..+..+...+.+|+||+|+..|+++ +.+|+++|+|||++|+|+..+..++. .+. +.+++++||.
T Consensus 72 ~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 72 FENIFADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred ccEEEEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 3445556666667778889999999999999988 48999999999999999998876643 222 6799997775
Q ss_pred cchh
Q psy317 121 TQNL 124 (137)
Q Consensus 121 ~~~~ 124 (137)
+++
T Consensus 151 -~~l 153 (200)
T cd03280 151 -GEL 153 (200)
T ss_pred -HHH
Confidence 444
No 409
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.23 E-value=2.9e-11 Score=111.48 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=55.0
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVN--------NPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT 121 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~ 121 (137)
.++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.+. |.+|++.||..
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence 457899999999999999999995 899999999999999999998888654 67999977743
No 410
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.21 E-value=1.8e-11 Score=111.24 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=59.5
Q ss_pred cCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 60 KTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
.+.++..|||||+++++||++++ .+|+++||||||+|||+..+..+.+.+. +.+|+++||..|.+. ..|+
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~--~~d~ 1160 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME--VADQ 1160 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH--Hhhh
Confidence 45678999999999999999984 6789999999999999999988877543 458999777766543 2366
Q ss_pred eEEe
Q psy317 132 VCLI 135 (137)
Q Consensus 132 ~~~~ 135 (137)
++.+
T Consensus 1161 ~~~~ 1164 (1179)
T TIGR02168 1161 LYGV 1164 (1179)
T ss_pred Heee
Confidence 6544
No 411
>KOG0065|consensus
Probab=99.19 E-value=2.9e-12 Score=118.47 Aligned_cols=126 Identities=22% Similarity=0.223 Sum_probs=92.4
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHh-hhhcc-hh-HHHHHHHHHHHcCCCcccCcc-----CCCCCHHHHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAA-MFNQS-QA-GSCFISEILDTLGLQEHKTTM-----TSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~-~~~~~-~~-~~~~~~~~L~~lgL~~~~~~~-----~~~LSgGqkqrv~IArAL 81 (137)
-++..++.|||+|-+.+....+.... ...-. ++ .....+.+++.+||+.++|.. .+..|||||+||.+|-.+
T Consensus 196 e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~ 275 (1391)
T KOG0065|consen 196 EQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275 (1391)
T ss_pred ccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee
Confidence 45678999999999998865543211 11011 00 112467899999998877665 566999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+.+|+++++||+|.|||..+..+++..++ +.|.+++-+ |-...+.. |.||+|++
T Consensus 276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~--Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL--QPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEec--cCChHHHHhhhheeeeec
Confidence 99999999999999999999999998766 556665322 22233333 88998875
No 412
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.18 E-value=5.6e-12 Score=96.22 Aligned_cols=90 Identities=22% Similarity=0.424 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHhHHHHHHhhc-----
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-----NP--PIMFFDEPTSPLHKAEFTPKYERKV----- 110 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~-----~P--~iLlLDEPtsgLD~~~~~~i~~~~~----- 110 (137)
....+.++...++++++..+.+..||||+=|||-+|..... +| ++||+|||.++||...+..+...+.
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 34567788899999999999999999999999999987654 34 7999999999999997765544332
Q ss_pred cceeeeeccccchhhhhhc--CceEEe
Q psy317 111 DTKVDYTGNRTQNLQQTIR--NEVCLI 135 (137)
Q Consensus 111 ~~~v~~~~~~~~~~~~~~~--~~~~~~ 135 (137)
|.+|+|+ .||+--+++ ++|.+|
T Consensus 182 G~~vims---~HDLNhTLrhA~~~wLL 205 (248)
T COG4138 182 GLAIVMS---SHDLNHTLRHAHRAWLL 205 (248)
T ss_pred CcEEEEe---ccchhhHHHHHHHHHHH
Confidence 8899995 456655655 555544
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=7.4e-11 Score=93.65 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhccc-eeeeeccccchhhh
Q psy317 64 TSNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVDT-KVDYTGNRTQNLQQ 126 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~-~v~~~~~~~~~~~~ 126 (137)
..-+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.+... .+++++|....+..
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~ 253 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDA 253 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccc
Confidence 4568999999999999985 799999999999999999999999987533 56676654444443
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=4.8e-11 Score=92.68 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHhHHHHH-Hhh---ccceeee
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAEFTPKY-ERK---VDTKVDY 116 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~~~~i~-~~~---~~~~v~~ 116 (137)
.+++++..+|+.+. ....+|.|++++..+++++ +++|+++||||| |+++|+....... +.+ .+.++++
T Consensus 72 ~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vli 148 (222)
T cd03285 72 IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLF 148 (222)
T ss_pred ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34567777777644 3688999999999999999 899999999999 9999999887554 443 2679999
Q ss_pred eccccchhhh
Q psy317 117 TGNRTQNLQQ 126 (137)
Q Consensus 117 ~~~~~~~~~~ 126 (137)
+||. |++..
T Consensus 149 sTH~-~el~~ 157 (222)
T cd03285 149 ATHF-HELTA 157 (222)
T ss_pred Eech-HHHHH
Confidence 8884 66543
No 415
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.09 E-value=1.8e-10 Score=105.22 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=59.1
Q ss_pred CccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCce
Q psy317 61 TTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEV 132 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~ 132 (137)
.+++..||||||++++||++++. +|+++|||||++|||+..+..+.+.+. +..++++||....+ ...|++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~--~~~d~~ 1146 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI--EYADRA 1146 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH--Hhccee
Confidence 34577899999999999999985 789999999999999999998888665 34678866665433 233888
Q ss_pred EEec
Q psy317 133 CLIS 136 (137)
Q Consensus 133 ~~~~ 136 (137)
|.+.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 8763
No 416
>PRK00064 recF recombination protein F; Reviewed
Probab=99.08 E-value=3.3e-10 Score=93.67 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=57.8
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc-C
Q psy317 63 MTSNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR-N 130 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~-~ 130 (137)
....+|.||||++.||++|+ .+|+++|||||+++||+..+..+++.+. +..+++|+|...++..... .
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 35789999999999999986 7999999999999999999999999875 4588997766555443222 3
Q ss_pred ceEEe
Q psy317 131 EVCLI 135 (137)
Q Consensus 131 ~~~~~ 135 (137)
+++.+
T Consensus 350 ~i~~v 354 (361)
T PRK00064 350 KIFHV 354 (361)
T ss_pred cEEEE
Confidence 45544
No 417
>KOG0066|consensus
Probab=99.07 E-value=7.1e-11 Score=100.53 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCCccc-CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317 43 GSCFISEILDTLGLQEHK-TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN 119 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~-~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~ 119 (137)
.+.+++.+|.-+|+.... +++...+|||.|-||++||||...|-+|+|||||+.||.....++=+.+. ..|.+++||
T Consensus 388 AEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSH 467 (807)
T KOG0066|consen 388 AEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSH 467 (807)
T ss_pred chhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEec
Confidence 456888999999997654 67778999999999999999999999999999999999999998888888 459999776
Q ss_pred c
Q psy317 120 R 120 (137)
Q Consensus 120 ~ 120 (137)
.
T Consensus 468 D 468 (807)
T KOG0066|consen 468 D 468 (807)
T ss_pred c
Confidence 5
No 418
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=2.8e-10 Score=94.41 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhh
Q psy317 65 SNLSGGQKKRLSIALELVN---------NPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~ 126 (137)
..+|.||||++.||.+|+. +|+|||||||+++||+..+..+++.+. |..|++|+|...++..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~~ 346 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLKE 346 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhccc
Confidence 4689999999999999999 999999999999999999999999885 3699998877666543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.93 E-value=4.2e-10 Score=84.72 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=56.5
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH----Hhh---ccceeeeec
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY----ERK---VDTKVDYTG 118 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~----~~~---~~~~v~~~~ 118 (137)
.+++++..++..+..++..+++|+|++|...+.+. +.+|+++|+|||++|+|+.....+. +.+ .+.+++++|
T Consensus 41 ~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~T 119 (185)
T smart00534 41 VFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFAT 119 (185)
T ss_pred ccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 44566777888888888899999999984443332 3599999999999999998765543 332 256899977
Q ss_pred cccc
Q psy317 119 NRTQ 122 (137)
Q Consensus 119 ~~~~ 122 (137)
|..+
T Consensus 120 H~~~ 123 (185)
T smart00534 120 HYHE 123 (185)
T ss_pred cHHH
Confidence 7763
No 420
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.93 E-value=1.6e-09 Score=102.14 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=51.1
Q ss_pred cCccCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccc
Q psy317 60 KTTMTSNLSGGQKKRLS----IALE--------LVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNR 120 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~----IArA--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~ 120 (137)
.++.++.|||||||+++ +|++ +..+|+++||||||+|||+..+..+++.+. +.+++++|+.
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~ 1315 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSER 1315 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccc
Confidence 34557999999999996 5655 558999999999999999999999998666 6788887753
No 421
>KOG0060|consensus
Probab=98.93 E-value=1.8e-09 Score=93.73 Aligned_cols=108 Identities=19% Similarity=0.115 Sum_probs=75.6
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCcc-----------CCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTM-----------TSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~-----------~~~LSgGqkqrv~IA 78 (137)
|+...++-=|.++.+.++....... . +...++++.++|+.+++.+...+- -..||+|||||++.|
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~--~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A 582 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMD--S--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA 582 (659)
T ss_pred cCCCCccccchhheeeccCcccccc--c--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence 4444455557778877652111010 1 111345677788888776543321 356999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecccc
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRT 121 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~ 121 (137)
|-+.++|++-||||-||++|......++++.+ |.|-+=.+|+.
T Consensus 583 RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 583 RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence 99999999999999999999999999999777 55555555764
No 422
>PRK02224 chromosome segregation protein; Provisional
Probab=98.92 E-value=2.1e-09 Score=97.05 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=56.7
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHhHHHHHHhhc-----cc-eeeeeccccchh
Q psy317 63 MTSNLSGGQKK------RLSIALELVNN-----P-PIMFFDEPTSPLHKAEFTPKYERKV-----DT-KVDYTGNRTQNL 124 (137)
Q Consensus 63 ~~~~LSgGqkq------rv~IArAL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~~~-----~~-~v~~~~~~~~~~ 124 (137)
.+..||||+|+ |++++++++.+ | +++|+||||++||+..+..+++.+. |. +|++.||..+-+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 36799999999 89999998863 3 6799999999999999998886432 33 699977776665
Q ss_pred hhhhcCceEEec
Q psy317 125 QQTIRNEVCLIS 136 (137)
Q Consensus 125 ~~~~~~~~~~~~ 136 (137)
. ..|++|.+.
T Consensus 858 ~--~ad~~~~~~ 867 (880)
T PRK02224 858 G--AADDLVRVE 867 (880)
T ss_pred H--hcCeeEEee
Confidence 3 248888774
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.78 E-value=1.3e-08 Score=77.28 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeecccc
Q psy317 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRT 121 (137)
Q Consensus 51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~ 121 (137)
+..++..+......+.++++++| +..+.+++.+|+++|+||||+|+|+..+..+.. .+ .+.+++++||..
T Consensus 76 ~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 76 FTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred EEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 33344444455667788888776 555578889999999999999999987765533 22 267899977653
No 424
>PRK14079 recF recombination protein F; Provisional
Probab=98.76 E-value=1.8e-08 Score=83.01 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhcc-ceeeeec
Q psy317 65 SNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVD-TKVDYTG 118 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~-~~v~~~~ 118 (137)
.-+|+||||++.+|..|+ .+|++++||||+++||...+..+++.+.. ..+++|+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~ 325 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAG 325 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEc
Confidence 458999999999999999 89999999999999999999999998753 3666754
No 425
>KOG2355|consensus
Probab=98.71 E-value=1.3e-08 Score=79.63 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeeeecc
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDYTGN 119 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~~~~ 119 (137)
+-+++.+.++++ ..=+.+.+|-|||+||.||+.|.+.-++|+|||-|--||..++..+++.+ +|.||.|.||
T Consensus 129 Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 129 RREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred Hhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 344566666664 22346889999999999999999999999999999999999999988854 4889999888
Q ss_pred ccchh
Q psy317 120 RTQNL 124 (137)
Q Consensus 120 ~~~~~ 124 (137)
.-.-+
T Consensus 207 IFDGL 211 (291)
T KOG2355|consen 207 IFDGL 211 (291)
T ss_pred eccch
Confidence 65443
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.71 E-value=2.2e-08 Score=76.98 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=57.2
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhc--cceeeeeccc
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKV--DTKVDYTGNR 120 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~--~~~v~~~~~~ 120 (137)
.++++..++..+...+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+..... +++.+. +.+++++||.
T Consensus 72 ~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 72 FNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred hhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 4456777777777778889999999976 45566889999999999999999976443 333332 6799996664
Q ss_pred cchh
Q psy317 121 TQNL 124 (137)
Q Consensus 121 ~~~~ 124 (137)
..-.
T Consensus 151 ~~l~ 154 (204)
T cd03282 151 RDIA 154 (204)
T ss_pred HHHH
Confidence 4433
No 427
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.6e-07 Score=84.36 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=62.5
Q ss_pred HHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317 51 LDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ 122 (137)
Q Consensus 51 L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~ 122 (137)
|-.+||... +++...+||||+.||+-+|.-+=..= =+.+||||+.||.+...+.+++.+. |.|++++-|...
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 445688765 58889999999999999999886553 5789999999999999998888554 779999545444
Q ss_pred hhhhhhcCceE
Q psy317 123 NLQQTIRNEVC 133 (137)
Q Consensus 123 ~~~~~~~~~~~ 133 (137)
-|..| |+++
T Consensus 545 ti~~A--D~iI 553 (935)
T COG0178 545 TIRAA--DHII 553 (935)
T ss_pred HHhhc--CEEE
Confidence 44333 5543
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.66 E-value=1.3e-07 Score=72.10 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeee
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDY 116 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~ 116 (137)
+.+.+.+..+++... .||||||..++||--| ....+++|||||.++||...+..+.+.+. +.-+++
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii 194 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFII 194 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455666776666433 9999999999998654 35779999999999999999999888766 347889
Q ss_pred eccccchhhhh
Q psy317 117 TGNRTQNLQQT 127 (137)
Q Consensus 117 ~~~~~~~~~~~ 127 (137)
+||...-+..|
T Consensus 195 ~Th~~~~~~~a 205 (220)
T PF02463_consen 195 TTHNPEMFEDA 205 (220)
T ss_dssp E-S-HHHHTT-
T ss_pred ccccccccccc
Confidence 88887766665
No 429
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.64 E-value=6.6e-08 Score=73.89 Aligned_cols=80 Identities=9% Similarity=-0.054 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 11 WDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 11 ~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
...+|+.+|+.+|+.++... . ..+ . +++.++++.+++ .+|+++|+
T Consensus 67 ~~~l~~~~~~~d~l~~~~s~--~----~~e--~-~~~~~iL~~~~~--------------------------~~p~llll 111 (199)
T cd03283 67 PVKIFTSIRVSDDLRDGISY--F----YAE--L-RRLKEIVEKAKK--------------------------GEPVLFLL 111 (199)
T ss_pred cceEEEeccchhccccccCh--H----HHH--H-HHHHHHHHhccC--------------------------CCCeEEEE
Confidence 35577888888888765321 0 111 2 457778887763 79999999
Q ss_pred eCCCCCCCHHhHHHHH----Hhh--ccceeeeeccccchhh
Q psy317 91 DEPTSPLHKAEFTPKY----ERK--VDTKVDYTGNRTQNLQ 125 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~----~~~--~~~~v~~~~~~~~~~~ 125 (137)
|||++|+|+..+..+. +.+ .+.+++++||....+.
T Consensus 112 DEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 112 DEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred ecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 9999999999876443 222 2679999666654443
No 430
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.60 E-value=7.4e-08 Score=65.08 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=38.1
Q ss_pred CccCCCCCHHHH-HHHHHHHHH------hc------CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 61 TTMTSNLSGGQK-KRLSIALEL------VN------NPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 61 ~~~~~~LSgGqk-qrv~IArAL------~~------~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.+..+.+||||| ..+.++.++ .. .|++++|||||++||+..+..+++.++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 567899999999 444444433 22 479999999999999999999887654
No 431
>KOG0064|consensus
Probab=98.59 E-value=3e-08 Score=85.85 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCcccCccC---------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcccee
Q psy317 44 SCFISEILDTLGLQEHKTTMT---------SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV 114 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~---------~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v 114 (137)
++....+|+.+.|+..+.+-. ..||||+|||+.+||-+.++|++-+|||-||++.+.....+++..++.+|
T Consensus 581 d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi 660 (728)
T KOG0064|consen 581 DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGI 660 (728)
T ss_pred HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCc
Confidence 345667788777765444332 45999999999999999999999999999999999999999998886655
Q ss_pred e--eecccc
Q psy317 115 D--YTGNRT 121 (137)
Q Consensus 115 ~--~~~~~~ 121 (137)
- =.||++
T Consensus 661 ~llsithrp 669 (728)
T KOG0064|consen 661 SLLSITHRP 669 (728)
T ss_pred eEEEeecCc
Confidence 5 333654
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.59 E-value=8.4e-08 Score=86.54 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeeccccc
Q psy317 50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRTQ 122 (137)
Q Consensus 50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~~ 122 (137)
++..+|-.+.....++++|+|++|++.|++++ .+|.++|+|||++|+|+.....+.. .+ .+.+++++||..+
T Consensus 374 i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 374 IFADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred EEEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 33344444455567889999999999999998 8999999999999999998776643 22 3678999777633
No 433
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.57 E-value=2.7e-07 Score=68.23 Aligned_cols=60 Identities=28% Similarity=0.290 Sum_probs=48.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317 63 MTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ 122 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~ 122 (137)
+...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.+. +..|++|||-++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 46778999999999888888777 8999999999999999998888664 468999888765
No 434
>KOG0063|consensus
Probab=98.52 E-value=9e-08 Score=81.33 Aligned_cols=89 Identities=18% Similarity=0.328 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHH---HHhhc---cceeeee
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPK---YERKV---DTKVDYT 117 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i---~~~~~---~~~v~~~ 117 (137)
-+.+.+.++-+.+++..++-+.+||||++||+++|.+|=...++.+.|||.+.||...+... ..+.+ +.|-++
T Consensus 434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv- 512 (592)
T KOG0063|consen 434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV- 512 (592)
T ss_pred HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh-
Confidence 34667788888899999999999999999999999999999999999999999999987532 22222 446666
Q ss_pred ccccchhhhh--hcCceEEe
Q psy317 118 GNRTQNLQQT--IRNEVCLI 135 (137)
Q Consensus 118 ~~~~~~~~~~--~~~~~~~~ 135 (137)
+.||.--| +.|||++.
T Consensus 513 --VEhdfImaTYladrvivf 530 (592)
T KOG0063|consen 513 --VEHDFIMATYLADRVIVF 530 (592)
T ss_pred --hhhHHHHHHhhcceeEEE
Confidence 88886555 33888864
No 435
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.49 E-value=1.4e-07 Score=71.81 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=41.8
Q ss_pred CCCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHhHHHHHHhhccc
Q psy317 65 SNLSGG--QKKRLSIALELVNNPPIMFFDEPT-----SPLHKAEFTPKYERKVDT 112 (137)
Q Consensus 65 ~~LSgG--qkqrv~IArAL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~~~~~ 112 (137)
+..+|+ +++++.||++++.+|+++++|||| +|||+..++.+.+.+...
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 444444 889999999999999999999999 999999999999877644
No 436
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.47 E-value=6.1e-07 Score=75.80 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCcc---cCcc--CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------cc
Q psy317 43 GSCFISEILDTLGLQEH---KTTM--TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VD 111 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~---~~~~--~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~ 111 (137)
..+.++.+|+++.+.++ .|.. +-.||.|||||+++--|+.-+.+|+++||=.+--||.-+..|+..+ .|
T Consensus 420 s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG 499 (546)
T COG4615 420 SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG 499 (546)
T ss_pred ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC
Confidence 34677888988887654 3333 4569999999999999999999999999999999999999999843 39
Q ss_pred ceeeeeccccchhhhh
Q psy317 112 TKVDYTGNRTQNLQQT 127 (137)
Q Consensus 112 ~~v~~~~~~~~~~~~~ 127 (137)
+||+-.||.+|=-.-|
T Consensus 500 KTI~aIsHDd~YF~~A 515 (546)
T COG4615 500 KTIFAISHDDHYFIHA 515 (546)
T ss_pred CeEEEEecCchhhhhH
Confidence 9999988888755444
No 437
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.45 E-value=4.1e-07 Score=77.22 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCcc--cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh------ccceeee
Q psy317 45 CFISEILDTLGLQEH--KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK------VDTKVDY 116 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~--~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~------~~~~v~~ 116 (137)
..+.++|.+.|+.+- .-++++.||.|||.|+.||++++..|.+++.||-.|-||+.+...+...+ .|.|+..
T Consensus 484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTliv 563 (593)
T COG2401 484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563 (593)
T ss_pred hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 456789999999763 45678999999999999999999999999999999999999988776633 3778888
Q ss_pred eccccchhhhhhc-CceEEe
Q psy317 117 TGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~~ 135 (137)
.||+. |+--|++ |.++++
T Consensus 564 vThrp-Ev~~AL~PD~li~v 582 (593)
T COG2401 564 VTHRP-EVGNALRPDTLILV 582 (593)
T ss_pred EecCH-HHHhccCCceeEEe
Confidence 77665 4555665 777654
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.34 E-value=4.3e-07 Score=81.89 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=55.6
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH----hh--ccceeeeeccccc
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE----RK--VDTKVDYTGNRTQ 122 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~----~~--~~~~v~~~~~~~~ 122 (137)
++...+|-.+......+++|+|++++..|++++ .+|.++|+|||++|+|+.+...+.. .+ .|.+++++||...
T Consensus 368 ~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 368 EIFADIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred heeeecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 333344444445567889999999999998876 8999999999999999999986643 22 3678999776643
No 439
>KOG0063|consensus
Probab=98.33 E-value=5.9e-07 Score=76.47 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR 120 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~ 120 (137)
...++.+.+.|....++-+..||||+-||.+||++-+.+.++.++|||.+.||...+.......+ +.-|++ .
T Consensus 193 ~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIV---V 269 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV---V 269 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEE---E
Confidence 45567778888888999999999999999999999999999999999999999998765444333 223444 6
Q ss_pred cchhhhhhc--CceEEe
Q psy317 121 TQNLQQTIR--NEVCLI 135 (137)
Q Consensus 121 ~~~~~~~~~--~~~~~~ 135 (137)
.||+..--= |-+|.|
T Consensus 270 EHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 270 EHDLSVLDYLSDFICCL 286 (592)
T ss_pred EeechHHHhhhcceeEE
Confidence 777764322 555554
No 440
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.8e-06 Score=78.90 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=49.6
Q ss_pred ccCCCCCHHHHHHHHHHHHH------hcC--CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccc
Q psy317 62 TMTSNLSGGQKKRLSIALEL------VNN--PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQ 122 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL------~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~ 122 (137)
+.+.+||||++-.++||.+| ..+ -++|||||||..||+.....+++.+. +..|.+.||..+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee 884 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE 884 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH
Confidence 67899999999888877765 445 69999999999999999998888655 458888555543
No 441
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.23 E-value=2.8e-06 Score=65.56 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhcc-----ceeeeeccccchhhhh
Q psy317 69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKVD-----TKVDYTGNRTQNLQQT 127 (137)
Q Consensus 69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~~-----~~v~~~~~~~~~~~~~ 127 (137)
.-+.||+.++++++.+|.++|+|||++|+|+..... +++.+.. .+++++||........
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 556799999999999999999999999999865332 3344332 3688966665554444
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.22 E-value=5.1e-06 Score=61.26 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=47.9
Q ss_pred cccCccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHhHHHHHH---hh--ccceeeeeccccch
Q psy317 58 EHKTTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLH---KAEFTPKYE---RK--VDTKVDYTGNRTQN 123 (137)
Q Consensus 58 ~~~~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD---~~~~~~i~~---~~--~~~~v~~~~~~~~~ 123 (137)
...+..+..+|+|++| ......+...+|+++++|||++.+| ...+..+.+ .+ .|.++++++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3456678889999998 5555556778999999999999999 555544433 22 37789997765543
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.06 E-value=5.4e-06 Score=64.07 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHhH-HHHHHhhc---cceeeeeccc
Q psy317 65 SNLSGGQKKR----LSIALEL--VNNPPIMFFDEP---TSPLHKAEF-TPKYERKV---DTKVDYTGNR 120 (137)
Q Consensus 65 ~~LSgGqkqr----v~IArAL--~~~P~iLlLDEP---tsgLD~~~~-~~i~~~~~---~~~v~~~~~~ 120 (137)
.++|.|+.+. ..+++++ +.+|+++||||| |+++|.... ..+++.+. +.+++++||.
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 4567776654 3466665 569999999999 999998663 34555432 6689997776
No 444
>PRK13695 putative NTPase; Provisional
Probab=97.83 E-value=4.7e-05 Score=56.30 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=49.2
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHhHHHHHHhhc-cceeeeecccc
Q psy317 61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDE--PTSPLHKAEFTPKYERKV-DTKVDYTGNRT 121 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~-~~~v~~~~~~~ 121 (137)
.++...+|++++-+..+++..+.+|+++++|| |+.++++..++.+.+.+. +.++++++|..
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34456799999999999999999999999999 777888776665555544 67999988874
No 445
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.68 E-value=0.00011 Score=65.17 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=40.4
Q ss_pred cCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHhHHHHHH-hhc--cceeeeeccc
Q psy317 63 MTSNLSGGQKKRLSIALELV------NNPPIMFFDEPTSPLHKAEFTPKYE-RKV--DTKVDYTGNR 120 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~-~~~--~~~v~~~~~~ 120 (137)
.+..||||++|-+++|-.++ ...++ |+||||+.||...+..+.+ .+. ..-|++.||.
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d 613 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTD 613 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEech
Confidence 46789999999987666433 24566 5699999999999998886 332 3456654443
No 446
>PF13175 AAA_15: AAA ATPase domain
Probab=97.41 E-value=0.00042 Score=56.69 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=50.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccch
Q psy317 62 TMTSNLSGGQKKRLSIALELV------NN-PP---IMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQN 123 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~------~~-P~---iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~ 123 (137)
.++..+|.|.++.+.++..+. .. +. ++++|||=+.|.|..+..+++.+. +..|++|||-+|-
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 367889999999888877652 12 22 999999999999999999998664 4689999998763
No 447
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.38 E-value=0.00019 Score=55.81 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCCC------CCHH
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIAL----------------ELVNNPPIMFFDEPTSP------LHKA 100 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IAr----------------AL~~~P~iLlLDEPtsg------LD~~ 100 (137)
..+++..+...+++.+..++.+.. +|+.|++.+++ +...+|+++|+| |+++ +|+.
T Consensus 56 i~~Rl~~i~~~~~~~~~~~rl~~~--~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~ 132 (239)
T cd01125 56 IHRRLEAILQHLEPDDAGDRLFID--SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNG 132 (239)
T ss_pred HHHHHHHHHhhcCCcCcccceEEe--ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHH
Confidence 456777788877765544443322 56666665554 446899999999 7764 6888
Q ss_pred hHHHHHHhh------ccceeeeeccccchh
Q psy317 101 EFTPKYERK------VDTKVDYTGNRTQNL 124 (137)
Q Consensus 101 ~~~~i~~~~------~~~~v~~~~~~~~~~ 124 (137)
....+++.+ .+.+|++++|....-
T Consensus 133 ~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 133 AMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 887777643 277999988877543
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.25 E-value=0.00072 Score=54.24 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh-hccceeeeeccccchhhhhh-----------c--Cce
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER-KVDTKVDYTGNRTQNLQQTI-----------R--NEV 132 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-~~~~~v~~~~~~~~~~~~~~-----------~--~~~ 132 (137)
+.+=.|..-....+.+.+|+++|+|||++.-+ ...+++. ..|.+|++++|.. ++..+. + +|+
T Consensus 177 ~~~~~k~~~~~~~i~~~~P~villDE~~~~e~---~~~l~~~~~~G~~vI~ttH~~-~~~~~~~r~~~~~l~~~~~~~r~ 252 (270)
T TIGR02858 177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGREED---VEALLEALHAGVSIIATAHGR-DVEDLYKRPVFKELIENEAFERY 252 (270)
T ss_pred cccchHHHHHHHHHHhCCCCEEEEeCCCcHHH---HHHHHHHHhCCCEEEEEechh-HHHHHHhChHHHHHHhcCceEEE
Confidence 44444444455555667999999999986433 3333333 2488999977753 444442 2 888
Q ss_pred EEec
Q psy317 133 CLIS 136 (137)
Q Consensus 133 ~~~~ 136 (137)
++|+
T Consensus 253 i~L~ 256 (270)
T TIGR02858 253 VVLS 256 (270)
T ss_pred EEEe
Confidence 8886
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.16 E-value=0.00062 Score=62.04 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=34.0
Q ss_pred hcCCCEEEEeCCCCCC-CHHhHHHHHHhhc-----cceeeeeccccchhh
Q psy317 82 VNNPPIMFFDEPTSPL-HKAEFTPKYERKV-----DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~ 125 (137)
..+|+++++|||+.+| |+..+..+.+.++ |.++++.||...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999999 6887777766433 668889666666654
No 450
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.09 E-value=0.00047 Score=54.70 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=50.5
Q ss_pred cCCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHhH-H-HHHHhhc--cceeeeeccccchhhhhhc-
Q psy317 63 MTSNLSGGQ--------KKRLSIALELVNNPPIMFFDEPTSPLHKAEF-T-PKYERKV--DTKVDYTGNRTQNLQQTIR- 129 (137)
Q Consensus 63 ~~~~LSgGq--------kqrv~IArAL~~~P~iLlLDEPtsgLD~~~~-~-~i~~~~~--~~~v~~~~~~~~~~~~~~~- 129 (137)
....+|||+ +||+++||++..++.|.+| ||+.+|..+. . .+.+.++ +.|.++ .+|.+.....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~iv---ls~~la~~~~~ 200 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELV---LDRRLAERRIF 200 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEE---EchHHhhCCCC
Confidence 345579999 9999999999899999999 9999995332 2 3455555 457777 5666666665
Q ss_pred CceEEe
Q psy317 130 NEVCLI 135 (137)
Q Consensus 130 ~~~~~~ 135 (137)
+.+.++
T Consensus 201 paI~vl 206 (249)
T cd01128 201 PAIDIL 206 (249)
T ss_pred CeEEEc
Confidence 666555
No 451
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0016 Score=50.70 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh----hc---cceeeeeccccchhhhhh
Q psy317 71 QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER----KV---DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 71 qkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~----~~---~~~v~~~~~~~~~~~~~~ 128 (137)
+.+++.-....+.+|.++|+|||++|.++.....+... +. +.++++ .||++..+.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~---~TH~~el~~ 157 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLF---STHYHSLCD 157 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEE---EeccHHHHH
Confidence 44555444455689999999999999999986655442 22 568888 455555443
No 452
>PF13166 AAA_13: AAA domain
Probab=96.85 E-value=0.0031 Score=55.98 Aligned_cols=79 Identities=25% Similarity=0.253 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCcc-----------------cCccCCCCCHHHHHHHHHHH--HHhc-------CCCEEEEeCCCCCCC
Q psy317 45 CFISEILDTLGLQEH-----------------KTTMTSNLSGGQKKRLSIAL--ELVN-------NPPIMFFDEPTSPLH 98 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~-----------------~~~~~~~LSgGqkqrv~IAr--AL~~-------~P~iLlLDEPtsgLD 98 (137)
..+.+.|..+|.... .......||-|+|.-+++|- |.+. ...++++|.|.|.||
T Consensus 462 ~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD 541 (712)
T PF13166_consen 462 DRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLD 541 (712)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCC
Confidence 456667888875321 01236789999999999987 3333 678999999999999
Q ss_pred HHhHHHHHHhhc-------cceeeeeccccchhhh
Q psy317 99 KAEFTPKYERKV-------DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 99 ~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~ 126 (137)
...+..+..++. ..-|++ -|||+.+
T Consensus 542 ~~~~~~v~~~l~~~~~~~~~~QviI---lTHn~~F 573 (712)
T PF13166_consen 542 HNRRFGVASRLKEEIKNSKFRQVII---LTHNLYF 573 (712)
T ss_pred HHHHHHHHHHHHHHhhcCCcceEEE---EeCcHHH
Confidence 999998888655 236777 5666554
No 453
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.81 E-value=0.004 Score=48.51 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHH----HHHhhc---cceeeeeccccc
Q psy317 71 QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTP----KYERKV---DTKVDYTGNRTQ 122 (137)
Q Consensus 71 qkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~----i~~~~~---~~~v~~~~~~~~ 122 (137)
+.+++.-...-+.+|.++|+|||.+|.|+..... +++.+. +.+++++||...
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 4455544445578999999999988777554433 344333 558889665543
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.79 E-value=0.0038 Score=48.60 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHhHHHHHHhhc-----cceeeeecc
Q psy317 66 NLSGGQKKRLSIALELV----NNPPIMFFDEPTSPL----HKAEFTPKYERKV-----DTKVDYTGN 119 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgL----D~~~~~~i~~~~~-----~~~v~~~~~ 119 (137)
.+|++..++-.+.+.+- .+|+++++||||+++ |+..+..+++.+. |.+++++++
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN 161 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 36666555544444332 379999999999999 7766666666433 557766544
No 455
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.62 E-value=0.0033 Score=57.61 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=38.0
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHhHHHHHHhhc-----cceeeeeccccchhhh
Q psy317 77 IALELVNNPPIMFFDEPTSPL-HKAEFTPKYERKV-----DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsgL-D~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~ 126 (137)
|++++..+|+++++|||+.+| |+..+..+.+.++ |.++++.||...|+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 6887776666432 6688886665555543
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.47 E-value=0.013 Score=45.12 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHhHHHHHHhh-----ccceeeeecccc
Q psy317 66 NLSGGQKKRLSIALELVN--NPPIMFFDEPTSP---LHKAEFTPKYERK-----VDTKVDYTGNRT 121 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~--~P~iLlLDEPtsg---LD~~~~~~i~~~~-----~~~~v~~~~~~~ 121 (137)
..|.++++.+.....++. +|+++++||||+. .|......++..+ .+.++++++|..
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~ 165 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPY 165 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 457788999999999987 9999999999965 4444444443322 367888877653
No 457
>KOG0933|consensus
Probab=96.45 E-value=0.001 Score=61.34 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=43.2
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 58 EHKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 58 ~~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
+......+.||||||=.|+++..|+ ...+++||||--|+||....+.|-.+++
T Consensus 1074 ~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIk 1130 (1174)
T KOG0933|consen 1074 GIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIK 1130 (1174)
T ss_pred ccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHH
Confidence 3444557889999999998877554 3669999999999999999998877655
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.016 Score=40.66 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC----------CCHHhHHHHHH---hhc--cceeeeeccccchhhh
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSP----------LHKAEFTPKYE---RKV--DTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsg----------LD~~~~~~i~~---~~~--~~~v~~~~~~~~~~~~ 126 (137)
....+.+..+++..+++...+|+++++|||++- .+......+.+ ..+ +.++++++|.......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 65 ADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcccc
Confidence 344556677778889999999999999999954 44443343333 333 7799998887766544
No 459
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.24 E-value=0.0093 Score=56.31 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=53.3
Q ss_pred cCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317 63 MTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~ 129 (137)
....||||||-.++||.-++ ...++.+|||-=++||..++..+...+. +.--++.||+.-.|..|-+
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~ 1137 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADR 1137 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHH
Confidence 45679999999999988663 4569999999999999999998888766 3455577787777666544
No 460
>COG4637 Predicted ATPase [General function prediction only]
Probab=95.93 E-value=0.017 Score=47.83 Aligned_cols=57 Identities=26% Similarity=0.414 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317 65 SNLSGGQKKRLSIALELVN--NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT 121 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~--~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~ 121 (137)
..||-|+.+.+++|.+|.. .|.+++||||=.+|-|.-...+.+.+. ..-|+++||-.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~ 331 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSP 331 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCH
Confidence 4899999999999999976 689999999999999998887777555 33788865544
No 461
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.92 E-value=0.024 Score=52.14 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=49.8
Q ss_pred CccCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHhHH-HHHHhhc---cceeeeeccccchhhhhh
Q psy317 61 TTMTSNLSGGQKKRLSIALELVN--NPPIMFFDEP---TSPLHKAEFT-PKYERKV---DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~--~P~iLlLDEP---tsgLD~~~~~-~i~~~~~---~~~v~~~~~~~~~~~~~~ 128 (137)
|......|-=+.....++..|-. ++.++|+||| |+.+|-.+.. .+++.+. +.+++++||. |++..-.
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~-~el~~l~ 736 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHY-HELTELE 736 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEech-HHHHHHh
Confidence 34456678778888888888755 9999999999 9999976643 3555544 4688999998 7776543
No 462
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.019 Score=48.11 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccchhh
Q psy317 65 SNLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~~~~ 125 (137)
.-.|-||++-+.+|.-|+ ..++||+|||-+|-||..-+..+++... +.-+++|+-...++.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~~~~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDTIELGVQVFVTTTDLEDID 344 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhhcccCCeEEEEccCHHHhh
Confidence 559999999999887664 4789999999999999999999999833 567888876555555
No 463
>KOG0964|consensus
Probab=95.62 E-value=0.008 Score=55.57 Aligned_cols=64 Identities=28% Similarity=0.309 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc---cceeee-eccccchhhhh
Q psy317 64 TSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV---DTKVDY-TGNRTQNLQQT 127 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~---~~~v~~-~~~~~~~~~~~ 127 (137)
..+||||||--|+||..++ -..+..|+||--++||+..+..+-..+. ..+=|+ ||-++.-+..|
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vA 1166 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVA 1166 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHH
Confidence 4589999999999988764 3569999999999999999998777655 334444 44777777665
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.19 E-value=0.054 Score=41.01 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccc
Q psy317 76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQ 122 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~ 122 (137)
.++++|..+|+++++|||. |+.....+++... |..++.|+|...
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~~G~~v~~t~Ha~~ 110 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAETGHLVMSTLHTNS 110 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 5788999999999999996 6666655555443 778888777764
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.98 E-value=0.0014 Score=56.38 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=47.7
Q ss_pred HHHcCCCcccCccCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHhHHHHHH---h--hccceeeeeccccch
Q psy317 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIA--LELVNNPPIMFFDEPTSPLHKAEFTPKYE---R--KVDTKVDYTGNRTQN 123 (137)
Q Consensus 51 L~~lgL~~~~~~~~~~LSgGqkqrv~IA--rAL~~~P~iLlLDEPtsgLD~~~~~~i~~---~--~~~~~v~~~~~~~~~ 123 (137)
++.+++.+..++.+..+|+|++||+.|+ .++...|+.. ...+..+++ . ..|.|+++++|....
T Consensus 100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 3445555566677788899999999998 5666666544 334444443 2 237899998776543
Q ss_pred h--------hhhhcCceEEec
Q psy317 124 L--------QQTIRNEVCLIS 136 (137)
Q Consensus 124 ~--------~~~~~~~~~~~~ 136 (137)
. .+.+.|.|++|.
T Consensus 170 ~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 170 YGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccCCceeEeeeeEEEEE
Confidence 2 133447777664
No 466
>KOG0962|consensus
Probab=94.84 E-value=0.031 Score=53.09 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCCCHHHH------HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHh
Q psy317 65 SNLSGGQK------KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYER 108 (137)
Q Consensus 65 ~~LSgGqk------qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~ 108 (137)
+.-|.||| =|+++|=.++.+..+|=|||||++||.....-+...
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~ 1231 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKA 1231 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHH
Confidence 45799998 577888899999999999999999999988766553
No 467
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=94.70 E-value=0.045 Score=49.95 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=32.3
Q ss_pred HhcCCCEEEEeCCCCCCC-HHhHHHHHHhh-----ccceeeeeccccchhh
Q psy317 81 LVNNPPIMFFDEPTSPLH-KAEFTPKYERK-----VDTKVDYTGNRTQNLQ 125 (137)
Q Consensus 81 L~~~P~iLlLDEPtsgLD-~~~~~~i~~~~-----~~~~v~~~~~~~~~~~ 125 (137)
+-.+|+++++|||+.+|| +..+..+.+.+ .|.++++.||...|+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 456899999999999999 55555555432 2668888666666554
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.62 E-value=0.059 Score=41.97 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecccc
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRT 121 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~ 121 (137)
..+-....|.|+-=.--+.+.+ ++--|.|||||-++|.|.-+..++.++. |.-+++.||-.
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 3455788999997655555554 5668999999999999999988888766 66888877754
No 469
>KOG0996|consensus
Probab=94.24 E-value=0.038 Score=52.00 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=49.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhh
Q psy317 63 MTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQT 127 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~ 127 (137)
++.+||||+|-.-++|-.++. ..+++++||--|+||..+...+..... ++--++-|.+..+...|
T Consensus 1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa 1264 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELA 1264 (1293)
T ss_pred hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHH
Confidence 578999999999999987764 569999999999999998876665443 55455555555554444
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.13 E-value=0.11 Score=46.13 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeee
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDY 116 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~ 116 (137)
.+.+.++.+|+.......+..+||| +|+||| +..||+..+..+++.+...++.+
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhhCeEEe
Confidence 4455678889988888888999999 999999 89999999999988887655443
No 471
>PF13514 AAA_27: AAA domain
Probab=93.72 E-value=0.13 Score=48.47 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=54.8
Q ss_pred cCCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-
Q psy317 63 MTSNLSGGQKK------RLSIALEL-VNNPPI-MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR- 129 (137)
Q Consensus 63 ~~~~LSgGqkq------rv~IArAL-~~~P~i-LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~- 129 (137)
.+..||.|.+= |++++..+ -..+++ +|+|+++.+.|..-....++.+. ..-|+|-||-.|-+..|..
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~~ 1101 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELAREV 1101 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHHh
Confidence 35679999994 55555565 445666 99999999999998888888666 4478888988898887765
Q ss_pred --CceEEe
Q psy317 130 --NEVCLI 135 (137)
Q Consensus 130 --~~~~~~ 135 (137)
+.|-|+
T Consensus 1102 ~~~~v~v~ 1109 (1111)
T PF13514_consen 1102 FGDRVNVH 1109 (1111)
T ss_pred cCCCCcee
Confidence 555543
No 472
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=93.63 E-value=0.12 Score=47.03 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHhHHHHHHhh-----ccceeeeeccccchh
Q psy317 80 ELVNNPPIMFFDEPTSPLH-KAEFTPKYERK-----VDTKVDYTGNRTQNL 124 (137)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD-~~~~~~i~~~~-----~~~~v~~~~~~~~~~ 124 (137)
.+..+|+++++|||..+|| +.....+.+.+ .|..+.+.||...|+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567999999999999999 66665555532 266778855555554
No 473
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.58 E-value=0.075 Score=43.68 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=34.9
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
+++|||+.+||+..+..+++.+. +.+++++||..+.+-.+++.|
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence 55789999999999998888776 456779888888777776633
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.22 E-value=0.37 Score=39.62 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchh
Q psy317 76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNL 124 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~ 124 (137)
.+++||-.+|+++++||+. |+.+....++.. .|-.|+.|.|...-.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcCCcEEEEEcCCCHH
Confidence 4778899999999999997 887776655543 477877766876544
No 475
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.20 E-value=0.34 Score=43.02 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=44.2
Q ss_pred CccCCC-CCHHHHHHHHHHHHHh---cC-----CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc
Q psy317 61 TTMTSN-LSGGQKKRLSIALELV---NN-----PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR 120 (137)
Q Consensus 61 ~~~~~~-LSgGqkqrv~IArAL~---~~-----P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~ 120 (137)
+..+++ ||-|++.-++++--|+ .+ -+++++|.|.+.+|.......+..++ +.-|++-||.
T Consensus 523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn 596 (758)
T COG4694 523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN 596 (758)
T ss_pred CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence 334555 9999999988776553 23 46899999999999998887776544 5577774444
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.15 E-value=1.3 Score=29.22 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHH-----------hhccceeeeeccc
Q psy317 63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYE-----------RKVDTKVDYTGNR 120 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-----------~~~~~~v~~~~~~ 120 (137)
......++...+..++++--.+|.++++||+..-.+......... ...+..++.++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 345678888888888888888899999999999999887764432 2235566666663
No 477
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.88 E-value=0.1 Score=50.80 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccccchhh
Q psy317 64 TSNLSGGQKKRLSIALELV--------N--------NP-PIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQ 125 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~--------~--------~P-~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~~~~~ 125 (137)
.+.+|||+|..+.++.-++ . -| ++|+|||. +++|..+...+++.......-+.--+++++.
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~ 1440 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENIS 1440 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhcc
Confidence 6889999998887776554 2 23 45699999 9999999999988776442222222455543
No 478
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=91.05 E-value=0.73 Score=33.66 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCC-cccCccCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 46 FISEILDTLGLQ-EHKTTMTSNLSGGQKKRLS--IALELVN-NPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 46 ~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~--IArAL~~-~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. .++++ |+|++|......+++.+.
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHH
Confidence 455667766764 3345577889999999877 5555544 34443 999999999998888654
No 479
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=89.84 E-value=0.28 Score=42.00 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=34.8
Q ss_pred cCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy317 63 MTSNLSGGQKKRLSIALELV-------NNPPIMFFDEPTSPLHKA 100 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~-------~~P~iLlLDEPtsgLD~~ 100 (137)
..++.|.|+|+|+..+.+.+ .++-+|++|+||.+.|+.
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 46889999999999998887 899999999999999986
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=89.43 E-value=0.099 Score=38.92 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEec
Q psy317 69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLIS 136 (137)
Q Consensus 69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~~ 136 (137)
.|+-+|..||.++..+|+.+..+| +.+||..+..+.+.+. +.+|++.+|..+.-..... |+++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~ 131 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVD 131 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEE
Confidence 378899999999999999988877 8899999988877543 3478886665544222222 7777664
No 481
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.22 E-value=1.8 Score=38.33 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317 65 SNLSGGQKKRLSIAL--ELVNN--PPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 65 ~~LSgGqkqrv~IAr--AL~~~--P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~ 129 (137)
...|||+-=|+++|. +++.. .+.||+||-=+|+.=.....|-+++. ..-|+. .||=-+.|..
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~---VTHlPQVAa~ 499 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLC---VTHLPQVAAM 499 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEE---EecHHHHHhh
Confidence 458999999999998 34443 56999999999999888888888776 347777 5565566665
No 482
>KOG0018|consensus
Probab=88.94 E-value=0.3 Score=45.85 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=42.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 62 TMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
++...||||+|-..++|.-++. ..+..+|||--|+||-.+...+....+
T Consensus 1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence 3457799999999999887764 459999999999999999998888766
No 483
>KOG0250|consensus
Probab=88.81 E-value=0.21 Score=46.91 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=55.8
Q ss_pred cCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHhHHHHHHhhccc-------eeeeeccccchhhhhhcCc
Q psy317 63 MTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKAEFTPKYERKVDT-------KVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~-------~v~~~~~~~~~~~~~~~~~ 131 (137)
....||||+|=-..+|..| +...++-.|||=--.+|..++...++.+.+. .|++ |+|||.....+.
T Consensus 986 d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~Ifi---TPqdi~~l~~~~ 1062 (1074)
T KOG0250|consen 986 DTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFI---TPQDISKLNSDD 1062 (1074)
T ss_pred cccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEE---ccccHhhhcccc
Confidence 3577999999998888877 4678999999999999999999888877744 7889 999998777633
Q ss_pred e
Q psy317 132 V 132 (137)
Q Consensus 132 ~ 132 (137)
.
T Consensus 1063 ~ 1063 (1074)
T KOG0250|consen 1063 G 1063 (1074)
T ss_pred c
Confidence 3
No 484
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.09 E-value=2.1 Score=39.42 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHH---HHHHHhc--------CC--CEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317 65 SNLSGGQKKRLS---IALELVN--------NP--PIMFFDEPTSPLHKAEFTPKYERKVD 111 (137)
Q Consensus 65 ~~LSgGqkqrv~---IArAL~~--------~P--~iLlLDEPtsgLD~~~~~~i~~~~~~ 111 (137)
..+|||||++++ +|.+|.. .| .-+||||.|+-=|+.....++.....
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~ 1048 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFRE 1048 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHH
Confidence 569999999985 4555532 33 46999999999999999988886663
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=86.07 E-value=0.43 Score=35.58 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHh
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~ 101 (137)
...+.+..+...+..+.+..+.|.|++++..+ .+.+|+++|+|+|+.+.++..
T Consensus 63 ~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 63 LLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred HHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 44566777777667778888999999876555 578899999999999998643
No 486
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=85.87 E-value=1.6 Score=38.93 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhccc----eeeeeccccchhhhhhcCceEEe
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKVDT----KVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
.|.|||.+||=+.|.|..+..+++.+.+. -+++|||-+|=..+|--+.+|.+
T Consensus 301 r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~l 356 (581)
T COG3593 301 RPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRL 356 (581)
T ss_pred ccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEE
Confidence 44499999999999999999888887755 47799999988877766777754
No 487
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=85.17 E-value=0.63 Score=43.01 Aligned_cols=57 Identities=19% Similarity=0.026 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHh-HHHHHHhhc---cceeeeecccc
Q psy317 65 SNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAE-FTPKYERKV---DTKVDYTGNRT 121 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~-~~~i~~~~~---~~~v~~~~~~~ 121 (137)
..+|-=+--...++..| ++++.++|+||+ |+.+|-.+ ...+++.+. +..++++||..
T Consensus 650 ~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~ 715 (840)
T TIGR01070 650 SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF 715 (840)
T ss_pred cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 33444444455555554 578999999999 55555555 333555444 46788988763
No 488
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.57 E-value=2.2 Score=34.53 Aligned_cols=45 Identities=9% Similarity=-0.108 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccc-eeeeeccccc
Q psy317 74 RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDT-KVDYTGNRTQ 122 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~-~v~~~~~~~~ 122 (137)
.-.++.+|-.+|+++++|||.+ .. ...+++.. .|. +++.|.|...
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVNTGHPGSITTLHAGS 254 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHhcCCCeEEEEEeCCC
Confidence 3357778999999999999997 22 33445544 354 3456445543
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.00 E-value=5.1 Score=33.89 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHhHHHHHHhhc---------cceeeeeccccchhhhhh
Q psy317 76 SIALELVNNPPIMFFDE----------PTSPLHKAEFTPKYERKV---------DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDE----------PtsgLD~~~~~~i~~~~~---------~~~v~~~~~~~~~~~~~~ 128 (137)
.+..|....|.||++|| +.++.|......+.+.+. +..|+.+||...++..|+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAl 301 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPAL 301 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHH
Confidence 34556678999999999 455667665554544332 235778999999998885
No 490
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=74.80 E-value=15 Score=28.62 Aligned_cols=58 Identities=14% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHhHHHHHH----hhc---cceeeeecccc
Q psy317 64 TSNLSGGQKKRLSIALEL--VNNPPIMFFDEPTSPLHKAEFTPKYE----RKV---DTKVDYTGNRT 121 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL--~~~P~iLlLDEPtsgLD~~~~~~i~~----~~~---~~~v~~~~~~~ 121 (137)
...+|.=+.-...++..+ +.+..++|+||+..|=++.+...+.. .+. +..++++||..
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 344555444444444444 56788999999999999988774443 333 45677866654
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.63 E-value=7.8 Score=28.74 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=28.4
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCC--CCHHhHHHHHHhhc----cceeeeeccc
Q psy317 75 LSIALELV--NNPPIMFFDEPTSP--LHKAEFTPKYERKV----DTKVDYTGNR 120 (137)
Q Consensus 75 v~IArAL~--~~P~iLlLDEPtsg--LD~~~~~~i~~~~~----~~~v~~~~~~ 120 (137)
...|+..+ .+.++|||||-..+ ++....+.+++.+. +..|++|++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 34445444 46799999998876 23333444444433 5588898754
No 492
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.32 E-value=6.1 Score=34.45 Aligned_cols=98 Identities=8% Similarity=0.071 Sum_probs=53.9
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHH-HHHHHHHHhcCC-----CEEE
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKK-RLSIALELVNNP-----PIMF 89 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkq-rv~IArAL~~~P-----~iLl 89 (137)
+..++.|++.++........ .. .....+......++.+.....+.+...+++. .+.-..+++.++ .+|+
T Consensus 297 ~RigA~EQLr~~AeilGVpv---~~--~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LV 371 (484)
T PRK06995 297 YRIGGHEQLRIYGKILGVPV---HA--VKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLL 371 (484)
T ss_pred cchhHHHHHHHHHHHhCCCe---ec--cCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEE
Confidence 34678888886543321111 11 1122333445556766555666665444432 233344444544 7899
Q ss_pred EeCCCCCCCHHhHHHHHHhhccceeeeec
Q psy317 90 FDEPTSPLHKAEFTPKYERKVDTKVDYTG 118 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~~~~v~~~~ 118 (137)
||.++.+-+.......+....-..+++|.
T Consensus 372 LdAt~~~~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 372 LNATSHGDTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred EeCCCcHHHHHHHHHHhccCCCCEEEEeC
Confidence 99999997777666666654444555543
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=73.92 E-value=6 Score=26.30 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHH---HHhh-------ccceeeeeccccc
Q psy317 73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPK---YERK-------VDTKVDYTGNRTQ 122 (137)
Q Consensus 73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i---~~~~-------~~~~v~~~~~~~~ 122 (137)
+......+...++.++++||.-.. ++.....+ ++.. .+..++++++...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345556777889999999998765 23333333 3332 3457777776555
No 494
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=72.63 E-value=8.1 Score=33.19 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHH-HHHH------hcCCCEEEEe-----------------CC--CCCCCHHhHHHHHH---hhc----c
Q psy317 65 SNLSGGQKKRLSI-ALEL------VNNPPIMFFD-----------------EP--TSPLHKAEFTPKYE---RKV----D 111 (137)
Q Consensus 65 ~~LSgGqkqrv~I-ArAL------~~~P~iLlLD-----------------EP--tsgLD~~~~~~i~~---~~~----~ 111 (137)
++-|-++|-+... |.++ ..+-=+|++| || |+|+|+.....+.+ ++. |
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 5566677765442 2222 1233466777 76 66999999975554 333 3
Q ss_pred c-----eeeeeccccchhhhhhcCceEEecC
Q psy317 112 T-----KVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 112 ~-----~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
. ||++ .+|||.....++|..+.|
T Consensus 302 sIT~~~TVlv---~~hdm~e~i~d~v~~i~d 329 (438)
T PRK07721 302 SITAFYTVLV---DGDDMNEPIADTVRGILD 329 (438)
T ss_pred CeeeEEEEEE---ECCCCCchhhhhEEEecC
Confidence 2 6666 677887766688877754
No 495
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=72.61 E-value=17 Score=28.71 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccce
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQ-KKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTK 113 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGq-kqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~ 113 (137)
+.+-.++..+|.....--+.+.|+.-+ -+-++=|+| .. .+. | |||.|+|..+...|++...+..
T Consensus 138 etAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca--~~-g~~-l-EPTGGIdl~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACA--KH-GFY-L-EPTGGIDLDNFEEIVQIALDAG 202 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHH--Hc-CCc-c-CCCCCccHHhHHHHHHHHHHcC
Confidence 345568888898876666666666543 343333333 22 344 4 9999999999999999776553
No 496
>COG1106 Predicted ATPases [General function prediction only]
Probab=72.55 E-value=8 Score=32.64 Aligned_cols=62 Identities=26% Similarity=0.226 Sum_probs=48.7
Q ss_pred CccCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHhHHHHHHhhcc------ceeeeeccccc
Q psy317 61 TTMTSNLSGGQKKRLSIALELVN-NPPIMFFDEPTSPLHKAEFTPKYERKVD------TKVDYTGNRTQ 122 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~-~P~iLlLDEPtsgLD~~~~~~i~~~~~~------~~v~~~~~~~~ 122 (137)
..+....|-|-++.+.|.-++.. +-+++++||+=++|-|.....+.+.+.. ..+++|||.+-
T Consensus 246 ~~~~~~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e 314 (371)
T COG1106 246 KIPLNEEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTE 314 (371)
T ss_pred ceeeeeecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHH
Confidence 33457899999999999887765 3489999999999999999988886652 35667666654
No 497
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=72.34 E-value=5.3 Score=34.09 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=29.0
Q ss_pred cCCCEEEEeCCCCCCCHHh-HHHHHHhh-----ccceeeeec-cccchhh
Q psy317 83 NNPPIMFFDEPTSPLHKAE-FTPKYERK-----VDTKVDYTG-NRTQNLQ 125 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~-~~~i~~~~-----~~~~v~~~~-~~~~~~~ 125 (137)
.+|++|++|||...++... +..++..+ .+..++++| |...++.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 4799999999998887643 33444432 255788877 6666554
No 498
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=72.14 E-value=13 Score=25.50 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 45 CFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALEL-----VNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 45 ~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL-----~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
..+.+++..++..- ....+...++++++++....... ...|+++ |+|++|.....++++.+.
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIE 167 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHH
Confidence 44556777766432 23445667888888776655542 3455655 999999999988887654
No 499
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=70.52 E-value=21 Score=31.20 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=37.1
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT 103 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~ 103 (137)
.+--.+.-||.+.+-..|=+|+=...++||.||=+++...-.+.
T Consensus 314 p~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd 357 (554)
T COG3044 314 PDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD 357 (554)
T ss_pred cccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh
Confidence 33345778999999999999999999999999999987665554
No 500
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.64 E-value=24 Score=28.94 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHhcCCCEEEEeCC----------CCCCCHHhHHHHHHhhc---------cceeeeeccccchhhhhhc
Q psy317 79 LELVNNPPIMFFDEP----------TSPLHKAEFTPKYERKV---------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 79 rAL~~~P~iLlLDEP----------tsgLD~~~~~~i~~~~~---------~~~v~~~~~~~~~~~~~~~ 129 (137)
.|--..|.+|++||. .++.|+.....+.+.+. +..|+.+|+..+.+..+..
T Consensus 210 ~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~ 279 (364)
T TIGR01242 210 LAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALL 279 (364)
T ss_pred HHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhc
Confidence 344457899999994 33456655555544331 3357788898888887764
Done!