Query psy317
Match_columns 137
No_of_seqs 133 out of 2070
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:08:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.4E-29 1.2E-33 205.9 12.5 118 12-137 114-239 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2.8E-29 9.6E-34 205.9 11.5 118 12-137 89-214 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 6E-29 2E-33 205.4 12.2 118 12-137 84-209 (381)
4 3tif_A Uncharacterized ABC tra 100.0 1.7E-28 5.7E-33 190.0 12.4 121 12-137 92-220 (235)
5 1z47_A CYSA, putative ABC-tran 100.0 2.7E-28 9.2E-33 199.8 12.5 118 12-137 96-221 (355)
6 1oxx_K GLCV, glucose, ABC tran 100.0 3.2E-28 1.1E-32 199.0 12.4 118 12-137 91-216 (353)
7 2yyz_A Sugar ABC transporter, 100.0 3.5E-28 1.2E-32 199.3 11.9 118 12-137 84-209 (359)
8 1g29_1 MALK, maltose transport 100.0 4.5E-28 1.5E-32 199.4 12.4 118 12-137 90-215 (372)
9 2pcj_A ABC transporter, lipopr 100.0 7.1E-28 2.4E-32 185.2 12.7 118 12-137 91-214 (224)
10 3gfo_A Cobalt import ATP-bindi 100.0 4.6E-28 1.6E-32 192.0 11.8 115 15-137 97-219 (275)
11 2it1_A 362AA long hypothetical 100.0 3.7E-28 1.2E-32 199.4 11.4 118 12-137 84-209 (362)
12 1b0u_A Histidine permease; ABC 100.0 6.6E-28 2.3E-32 189.4 12.0 118 12-137 102-228 (262)
13 2onk_A Molybdate/tungstate ABC 99.9 7.6E-28 2.6E-32 187.2 11.7 116 12-137 79-202 (240)
14 2olj_A Amino acid ABC transpor 99.9 1.1E-27 3.8E-32 188.7 12.5 118 12-137 109-234 (263)
15 1v43_A Sugar-binding transport 99.9 5.3E-28 1.8E-32 199.1 10.6 118 12-137 92-217 (372)
16 3d31_A Sulfate/molybdate ABC t 99.9 1.2E-27 4.1E-32 195.4 12.1 115 12-137 81-203 (348)
17 1vpl_A ABC transporter, ATP-bi 99.9 2.1E-27 7.3E-32 186.3 12.6 118 12-137 97-221 (256)
18 4g1u_C Hemin import ATP-bindin 99.9 1.6E-27 5.5E-32 187.8 11.6 116 12-137 94-223 (266)
19 1g6h_A High-affinity branched- 99.9 1.9E-27 6.6E-32 186.1 11.2 122 13-137 92-228 (257)
20 1ji0_A ABC transporter; ATP bi 99.9 3.5E-27 1.2E-31 183.0 10.6 117 12-137 90-214 (240)
21 2nq2_C Hypothetical ABC transp 99.9 1.6E-26 5.5E-31 180.8 13.0 122 12-137 75-204 (253)
22 2yz2_A Putative ABC transporte 99.9 1.2E-26 4.3E-31 182.4 11.8 115 14-137 90-213 (266)
23 2d2e_A SUFC protein; ABC-ATPas 99.9 1.7E-26 5.9E-31 180.0 11.9 121 12-137 89-219 (250)
24 2ihy_A ABC transporter, ATP-bi 99.9 4.9E-26 1.7E-30 180.6 11.5 117 16-137 112-238 (279)
25 1sgw_A Putative ABC transporte 99.9 3.9E-26 1.3E-30 175.1 8.8 114 12-136 87-207 (214)
26 2pjz_A Hypothetical protein ST 99.9 2.2E-25 7.5E-30 175.6 12.7 115 10-137 81-201 (263)
27 2qi9_C Vitamin B12 import ATP- 99.9 1.5E-25 5.1E-30 175.2 11.1 113 12-137 82-208 (249)
28 2zu0_C Probable ATP-dependent 99.9 1E-24 3.5E-29 171.7 15.1 123 12-137 106-240 (267)
29 2ixe_A Antigen peptide transpo 99.9 2.8E-25 9.5E-30 175.3 10.9 119 13-137 103-231 (271)
30 2ff7_A Alpha-hemolysin translo 99.9 1.2E-24 4.1E-29 169.6 11.5 110 13-137 93-218 (247)
31 3nh6_A ATP-binding cassette SU 99.9 4.2E-24 1.4E-28 171.7 10.6 123 10-137 134-263 (306)
32 2ghi_A Transport protein; mult 99.9 9E-24 3.1E-28 165.7 11.4 110 13-137 103-228 (260)
33 2cbz_A Multidrug resistance-as 99.9 7.4E-24 2.5E-28 164.1 10.1 117 10-137 72-203 (237)
34 1mv5_A LMRA, multidrug resista 99.9 2.8E-24 9.6E-29 166.7 7.6 110 14-137 87-212 (243)
35 2pze_A Cystic fibrosis transme 99.9 3.2E-23 1.1E-27 159.6 11.8 74 61-137 125-204 (229)
36 3gd7_A Fusion complex of cysti 99.9 7.8E-24 2.7E-28 175.2 8.1 110 13-137 104-228 (390)
37 3ozx_A RNAse L inhibitor; ATP 99.9 2.8E-23 9.6E-28 177.6 8.6 111 15-136 342-460 (538)
38 3j16_B RLI1P; ribosome recycli 99.9 1.5E-22 5.2E-27 175.3 10.9 110 15-136 425-542 (608)
39 3bk7_A ABC transporter ATP-bin 99.9 2.7E-22 9.2E-27 173.7 11.8 111 14-136 428-546 (607)
40 2bbs_A Cystic fibrosis transme 99.9 4.6E-22 1.6E-26 158.6 11.5 74 61-137 154-233 (290)
41 1yqt_A RNAse L inhibitor; ATP- 99.9 2.6E-22 9E-27 171.4 10.6 111 14-136 358-476 (538)
42 2yl4_A ATP-binding cassette SU 99.9 3.3E-22 1.1E-26 171.9 11.2 117 10-137 424-556 (595)
43 3b60_A Lipid A export ATP-bind 99.9 3.7E-22 1.3E-26 171.1 11.5 116 10-137 423-553 (582)
44 3qf4_A ABC transporter, ATP-bi 99.9 2E-22 6.9E-27 173.3 9.7 123 10-137 423-552 (587)
45 3b5x_A Lipid A export ATP-bind 99.9 3.5E-22 1.2E-26 171.3 11.0 116 10-137 423-553 (582)
46 4a82_A Cystic fibrosis transme 99.9 8.3E-22 2.8E-26 169.0 12.1 114 10-137 421-550 (578)
47 3bk7_A ABC transporter ATP-bin 99.9 3.8E-22 1.3E-26 172.7 9.7 89 45-136 207-302 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 3.4E-22 1.2E-26 170.7 9.2 89 45-136 137-232 (538)
49 3qf4_B Uncharacterized ABC tra 99.9 5.3E-22 1.8E-26 170.9 9.2 114 10-137 435-564 (598)
50 3j16_B RLI1P; ribosome recycli 99.9 1.4E-21 4.8E-26 169.3 11.2 90 44-136 199-295 (608)
51 3ux8_A Excinuclease ABC, A sub 99.9 5.4E-22 1.8E-26 172.4 8.3 117 15-135 147-276 (670)
52 3ux8_A Excinuclease ABC, A sub 99.9 5E-21 1.7E-25 166.3 12.9 105 17-135 504-618 (670)
53 3ozx_A RNAse L inhibitor; ATP 99.8 2.2E-21 7.5E-26 165.9 9.8 88 46-136 118-211 (538)
54 2iw3_A Elongation factor 3A; a 99.8 8.9E-21 3E-25 171.3 10.2 110 13-137 506-620 (986)
55 3g5u_A MCG1178, multidrug resi 99.8 5.8E-20 2E-24 169.6 10.5 117 9-137 1112-1244(1284)
56 3g5u_A MCG1178, multidrug resi 99.8 1E-19 3.5E-24 167.9 11.3 118 10-137 470-599 (1284)
57 3pih_A Uvrabc system protein A 99.8 2E-19 6.7E-24 161.8 12.4 105 17-135 766-880 (916)
58 2iw3_A Elongation factor 3A; a 99.8 6.4E-20 2.2E-24 165.7 9.0 91 44-137 877-973 (986)
59 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.6E-19 5.5E-24 131.3 8.5 74 60-135 51-135 (148)
60 2r6f_A Excinuclease ABC subuni 99.8 3.4E-19 1.2E-23 160.6 11.8 87 46-135 824-920 (972)
61 4f4c_A Multidrug resistance pr 99.8 2.4E-19 8.2E-24 165.8 10.3 118 9-137 1158-1290(1321)
62 2vf7_A UVRA2, excinuclease ABC 99.8 7E-19 2.4E-23 157.1 11.3 88 45-135 708-805 (842)
63 4f4c_A Multidrug resistance pr 99.8 5.7E-19 1.9E-23 163.4 10.6 115 9-137 497-627 (1321)
64 2ygr_A Uvrabc system protein A 99.8 8.9E-19 3E-23 158.2 11.5 87 46-135 842-938 (993)
65 2r6f_A Excinuclease ABC subuni 99.8 1.4E-18 4.8E-23 156.6 11.3 116 16-135 450-578 (972)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 6.7E-19 2.3E-23 143.7 8.1 74 61-137 274-359 (365)
67 3pih_A Uvrabc system protein A 99.8 1.3E-18 4.6E-23 156.3 10.7 118 15-135 409-538 (916)
68 2ygr_A Uvrabc system protein A 99.8 1.3E-18 4.4E-23 157.2 9.8 118 15-135 466-595 (993)
69 2vf7_A UVRA2, excinuclease ABC 99.7 1.9E-17 6.5E-22 147.9 10.5 89 43-135 356-453 (842)
70 4aby_A DNA repair protein RECN 99.7 5.1E-17 1.7E-21 132.5 10.3 66 67-135 296-368 (415)
71 1ye8_A Protein THEP1, hypothet 99.7 1.8E-17 6.3E-22 123.1 5.8 71 59-129 69-148 (178)
72 4ad8_A DNA repair protein RECN 99.7 1.2E-16 4.1E-21 135.1 7.4 72 62-136 392-471 (517)
73 3qkt_A DNA double-strand break 99.7 1.4E-16 4.9E-21 128.2 7.3 75 60-136 242-327 (339)
74 3kta_B Chromosome segregation 99.6 4.4E-16 1.5E-20 115.8 8.8 75 60-136 58-140 (173)
75 1e69_A Chromosome segregation 99.6 6.8E-16 2.3E-20 123.3 8.9 63 59-121 212-282 (322)
76 3auy_A DNA double-strand break 99.6 1.7E-14 5.8E-19 117.4 10.6 90 45-136 243-359 (371)
77 4gp7_A Metallophosphoesterase; 99.5 3E-15 1E-19 109.5 3.7 73 53-129 71-164 (171)
78 2o5v_A DNA replication and rep 99.5 7.2E-15 2.5E-19 120.2 6.0 71 61-136 259-341 (359)
79 1w1w_A Structural maintenance 99.5 4.8E-14 1.6E-18 116.4 7.8 73 62-136 329-410 (430)
80 2npi_A Protein CLP1; CLP1-PCF1 99.5 2.5E-15 8.5E-20 126.4 -0.9 111 15-136 194-323 (460)
81 3b85_A Phosphate starvation-in 99.3 2.2E-13 7.4E-18 103.5 -1.5 59 45-122 97-159 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.2 6.6E-12 2.3E-16 106.3 4.4 83 53-136 340-441 (525)
83 1tq4_A IIGP1, interferon-induc 99.2 9.6E-13 3.3E-17 109.5 -2.2 76 46-123 136-237 (413)
84 3aez_A Pantothenate kinase; tr 98.9 5.6E-12 1.9E-16 101.0 -6.9 79 13-99 131-209 (312)
85 3thx_B DNA mismatch repair pro 98.9 9.3E-10 3.2E-14 99.2 6.6 71 49-120 718-795 (918)
86 3b9q_A Chloroplast SRP recepto 98.9 1.2E-10 4.1E-15 92.9 -0.8 68 50-121 188-257 (302)
87 1nlf_A Regulatory protein REPA 98.9 3.7E-09 1.3E-13 82.1 7.0 76 46-124 98-184 (279)
88 3thx_A DNA mismatch repair pro 98.8 4.1E-09 1.4E-13 95.2 7.2 65 61-126 716-789 (934)
89 3sop_A Neuronal-specific septi 98.8 1.2E-11 4E-16 97.2 -8.8 94 13-121 57-150 (270)
90 2og2_A Putative signal recogni 98.8 2.5E-09 8.5E-14 87.4 2.7 67 50-120 245-313 (359)
91 1znw_A Guanylate kinase, GMP k 98.7 4E-11 1.4E-15 89.5 -8.3 79 44-136 106-202 (207)
92 1cr0_A DNA primase/helicase; R 98.7 4.3E-08 1.5E-12 76.4 8.2 59 62-121 125-197 (296)
93 2o8b_B DNA mismatch repair pro 98.7 1.7E-08 5.8E-13 91.9 5.9 78 53-134 838-924 (1022)
94 2v9p_A Replication protein E1; 98.5 1.6E-09 5.5E-14 86.8 -4.7 67 47-136 184-251 (305)
95 1ewq_A DNA mismatch repair pro 98.5 6.8E-08 2.3E-12 85.7 5.0 59 63-121 632-698 (765)
96 2pt7_A CAG-ALFA; ATPase, prote 98.5 8.1E-08 2.8E-12 77.2 4.5 50 69-122 225-276 (330)
97 2w0m_A SSO2452; RECA, SSPF, un 98.5 3.2E-07 1.1E-11 67.6 7.1 70 66-136 103-190 (235)
98 1pui_A ENGB, probable GTP-bind 98.5 1.4E-07 4.7E-12 69.0 4.6 67 45-111 127-195 (210)
99 2jeo_A Uridine-cytidine kinase 98.4 1.9E-08 6.5E-13 76.7 -1.0 98 12-120 67-164 (245)
100 1z6g_A Guanylate kinase; struc 98.4 1.2E-09 4.3E-14 82.4 -8.3 77 46-129 106-199 (218)
101 2ehv_A Hypothetical protein PH 98.3 3.8E-07 1.3E-11 68.2 4.7 69 68-136 119-206 (251)
102 2cvh_A DNA repair and recombin 98.3 9.9E-07 3.4E-11 64.8 6.3 79 46-124 61-159 (220)
103 1tf7_A KAIC; homohexamer, hexa 98.2 7.2E-08 2.4E-12 81.5 -1.9 64 73-136 126-208 (525)
104 2eyu_A Twitching motility prot 98.2 5.9E-07 2E-11 69.9 3.2 47 73-122 87-134 (261)
105 2i3b_A HCR-ntpase, human cance 98.1 7.5E-08 2.6E-12 71.8 -3.1 56 61-116 78-140 (189)
106 1wb9_A DNA mismatch repair pro 98.1 3.8E-06 1.3E-10 74.8 5.7 66 55-121 658-730 (800)
107 1pzn_A RAD51, DNA repair and r 98.0 3.3E-06 1.1E-10 68.2 4.2 58 68-125 208-290 (349)
108 3asz_A Uridine kinase; cytidin 98.0 3.3E-09 1.1E-13 78.5 -12.5 96 16-119 47-159 (211)
109 2qnr_A Septin-2, protein NEDD5 98.0 7.1E-08 2.4E-12 76.4 -5.7 57 59-120 106-166 (301)
110 3jvv_A Twitching mobility prot 97.8 2.3E-05 7.7E-10 63.7 5.7 46 76-124 188-234 (356)
111 4a74_A DNA repair and recombin 97.8 1.4E-05 4.6E-10 58.9 3.8 91 46-136 75-198 (231)
112 1odf_A YGR205W, hypothetical 3 97.8 5.3E-07 1.8E-11 71.3 -4.9 57 45-101 105-169 (290)
113 2obl_A ESCN; ATPase, hydrolase 97.7 4.4E-06 1.5E-10 67.6 -0.7 62 62-136 167-240 (347)
114 1sxj_E Activator 1 40 kDa subu 97.6 7E-05 2.4E-09 58.9 5.7 52 81-133 131-186 (354)
115 1rj9_A FTSY, signal recognitio 97.5 2.4E-05 8.1E-10 62.2 1.1 53 67-120 203-257 (304)
116 3ec2_A DNA replication protein 97.4 0.00026 8.8E-09 50.7 6.0 44 80-123 96-145 (180)
117 2qag_C Septin-7; cell cycle, c 97.4 1.5E-05 5.2E-10 66.1 -0.9 55 66-120 118-176 (418)
118 2bbw_A Adenylate kinase 4, AK4 97.4 5.8E-06 2E-10 62.7 -3.4 46 58-110 144-194 (246)
119 2dpy_A FLII, flagellum-specifi 97.4 3.6E-05 1.2E-09 64.1 1.1 59 64-135 256-328 (438)
120 1n0w_A DNA repair protein RAD5 97.1 0.0016 5.5E-08 48.0 7.2 81 46-126 74-179 (243)
121 2ewv_A Twitching motility prot 97.0 0.00092 3.2E-08 54.2 5.9 45 74-121 199-244 (372)
122 1nij_A Hypothetical protein YJ 97.0 4.7E-05 1.6E-09 60.4 -2.1 70 51-129 127-197 (318)
123 1udx_A The GTP-binding protein 97.0 0.00016 5.6E-09 59.9 1.1 72 50-128 239-316 (416)
124 2kjq_A DNAA-related protein; s 96.7 0.0014 4.9E-08 46.3 4.3 40 80-120 79-124 (149)
125 1lw7_A Transcriptional regulat 96.3 0.0012 4.1E-08 52.9 1.5 58 63-120 255-328 (365)
126 2f1r_A Molybdopterin-guanine d 96.2 6.1E-05 2.1E-09 55.1 -6.2 23 66-88 103-125 (171)
127 3szr_A Interferon-induced GTP- 95.9 0.0051 1.8E-07 52.9 3.8 31 80-110 142-178 (608)
128 1vma_A Cell division protein F 95.9 0.009 3.1E-07 47.3 4.7 44 47-95 151-197 (306)
129 1zp6_A Hypothetical protein AT 95.7 0.0021 7.1E-08 46.0 0.3 42 61-110 104-145 (191)
130 2ce7_A Cell division protein F 95.6 0.027 9.1E-07 47.3 7.0 61 69-129 93-172 (476)
131 1lw7_A Transcriptional regulat 95.5 0.0026 9E-08 50.9 0.2 31 65-95 295-330 (365)
132 3euj_A Chromosome partition pr 95.4 0.028 9.5E-07 47.4 6.1 56 62-118 375-449 (483)
133 2r6a_A DNAB helicase, replicat 95.3 0.083 2.8E-06 43.4 8.9 74 46-121 275-364 (454)
134 2dr3_A UPF0273 protein PH0284; 95.3 0.047 1.6E-06 40.0 6.5 41 83-123 127-175 (247)
135 3lda_A DNA repair protein RAD5 95.2 0.026 8.8E-07 46.3 5.5 78 45-122 227-329 (400)
136 2xau_A PRE-mRNA-splicing facto 94.7 0.0097 3.3E-07 52.6 1.7 65 63-127 187-258 (773)
137 2rcn_A Probable GTPase ENGC; Y 94.7 0.0062 2.1E-07 49.5 0.3 39 43-82 291-329 (358)
138 2ius_A DNA translocase FTSK; n 94.7 0.00073 2.5E-08 57.5 -5.5 79 43-122 243-343 (512)
139 1ls1_A Signal recognition part 94.6 0.07 2.4E-06 41.6 6.2 57 49-107 147-204 (295)
140 2qag_B Septin-6, protein NEDD5 94.6 0.0075 2.6E-07 50.2 0.5 52 66-120 161-218 (427)
141 1oix_A RAS-related protein RAB 93.6 0.042 1.4E-06 39.3 2.9 36 73-110 152-187 (191)
142 1s96_A Guanylate kinase, GMP k 92.9 0.13 4.6E-06 38.3 4.7 43 78-125 101-144 (219)
143 2e87_A Hypothetical protein PH 92.4 0.2 7E-06 39.7 5.5 57 61-118 226-287 (357)
144 1p9r_A General secretion pathw 91.8 0.0022 7.7E-08 53.0 -6.9 38 49-90 278-315 (418)
145 2bdt_A BH3686; alpha-beta prot 91.5 0.0026 9E-08 45.6 -6.0 55 68-126 96-162 (189)
146 3b9p_A CG5977-PA, isoform A; A 91.3 0.47 1.6E-05 35.9 6.3 62 68-129 97-177 (297)
147 2zr9_A Protein RECA, recombina 91.3 0.36 1.2E-05 38.6 5.7 53 72-124 125-201 (349)
148 3k1j_A LON protease, ATP-depen 90.6 0.041 1.4E-06 46.9 -0.4 46 64-110 181-226 (604)
149 2qm8_A GTPase/ATPase; G protei 90.3 0.088 3E-06 41.8 1.3 50 58-111 201-257 (337)
150 4a1f_A DNAB helicase, replicat 90.2 0.64 2.2E-05 37.2 6.3 34 65-98 108-141 (338)
151 2f9l_A RAB11B, member RAS onco 90.1 0.19 6.5E-06 35.8 2.9 34 75-110 130-163 (199)
152 2x8a_A Nuclear valosin-contain 88.9 0.0015 5.1E-08 50.6 -9.9 50 59-110 130-191 (274)
153 2qtf_A Protein HFLX, GTP-bindi 87.3 0.35 1.2E-05 38.9 2.9 61 46-110 280-349 (364)
154 2yv5_A YJEQ protein; hydrolase 84.0 0.061 2.1E-06 42.0 -3.0 36 44-79 264-300 (302)
155 3e70_C DPA, signal recognition 83.4 1.2 4.1E-05 35.3 4.3 48 73-121 232-279 (328)
156 2px0_A Flagellar biosynthesis 83.1 2 6.7E-05 33.4 5.4 30 73-106 173-202 (296)
157 2oap_1 GSPE-2, type II secreti 79.8 0.00094 3.2E-08 56.6 -15.9 51 64-127 398-453 (511)
158 1b9m_A Protein (mode); DNA-bin 79.5 0.21 7.2E-06 37.6 -1.4 45 43-88 51-95 (265)
159 1g5t_A COB(I)alamin adenosyltr 79.1 2 6.9E-05 31.8 3.9 52 72-123 106-165 (196)
160 2eyu_A Twitching motility prot 78.6 0.0032 1.1E-07 48.6 -12.1 37 62-100 168-206 (261)
161 3c8u_A Fructokinase; YP_612366 78.4 0.0068 2.3E-07 44.4 -9.8 32 63-94 108-140 (208)
162 1in4_A RUVB, holliday junction 77.2 0.081 2.8E-06 41.6 -4.5 31 47-78 144-174 (334)
163 1fnn_A CDC6P, cell division co 75.3 18 0.00061 27.7 8.6 38 83-121 124-169 (389)
164 2ewv_A Twitching motility prot 75.2 0.0041 1.4E-07 50.4 -12.8 35 64-100 281-317 (372)
165 1lvg_A Guanylate kinase, GMP k 74.6 0.043 1.5E-06 40.0 -6.3 34 77-110 116-150 (198)
166 3bh0_A DNAB-like replicative h 73.8 2.6 8.8E-05 32.7 3.4 30 67-96 134-163 (315)
167 2gza_A Type IV secretion syste 73.7 3.4 0.00012 32.8 4.2 51 68-122 236-288 (361)
168 1njg_A DNA polymerase III subu 71.2 5 0.00017 28.0 4.2 47 84-131 126-176 (250)
169 2z4s_A Chromosomal replication 70.4 5.1 0.00017 32.6 4.6 38 83-120 193-236 (440)
170 2r8r_A Sensor protein; KDPD, P 64.9 9.3 0.00032 28.9 4.7 46 77-122 77-128 (228)
171 1sxj_D Activator 1 41 kDa subu 62.6 5.3 0.00018 30.4 3.0 47 84-131 133-183 (353)
172 3cf0_A Transitional endoplasmi 57.7 24 0.00082 26.7 6.0 55 75-129 99-172 (301)
173 4fcw_A Chaperone protein CLPB; 56.2 14 0.00049 27.5 4.5 35 76-111 110-145 (311)
174 2chg_A Replication factor C sm 55.2 16 0.00053 25.1 4.2 48 83-131 101-152 (226)
175 3h4m_A Proteasome-activating n 52.4 19 0.00066 26.4 4.6 84 46-129 67-174 (285)
176 1jcn_A Inosine monophosphate d 49.5 0.88 3E-05 38.0 -3.7 20 79-100 28-47 (514)
177 1iy2_A ATP-dependent metallopr 47.1 0.12 4.1E-06 39.2 -8.6 44 64-109 167-222 (278)
178 3d8b_A Fidgetin-like protein 1 47.0 41 0.0014 26.1 6.0 57 74-130 166-240 (357)
179 2yhs_A FTSY, cell division pro 42.6 15 0.00052 30.9 2.9 49 72-120 398-448 (503)
180 1jr3_A DNA polymerase III subu 41.6 29 0.001 26.3 4.2 48 83-131 118-169 (373)
181 1ixz_A ATP-dependent metallopr 41.1 0.12 4E-06 38.5 -9.4 44 64-109 143-198 (254)
182 1u0l_A Probable GTPase ENGC; p 40.3 0.41 1.4E-05 37.1 -6.7 49 13-70 246-295 (301)
183 2z43_A DNA repair and recombin 40.2 19 0.00064 27.8 2.9 81 45-125 156-262 (324)
184 2qby_A CDC6 homolog 1, cell di 38.2 25 0.00087 26.5 3.3 38 84-121 128-173 (386)
185 2w58_A DNAI, primosome compone 37.8 14 0.00048 25.8 1.7 45 82-126 113-165 (202)
186 4b4t_J 26S protease regulatory 36.1 90 0.0031 25.4 6.5 54 76-129 233-305 (405)
187 1jjv_A Dephospho-COA kinase; P 36.1 9 0.00031 27.0 0.4 81 47-136 47-131 (206)
188 3szr_A Interferon-induced GTP- 35.7 36 0.0012 28.9 4.1 56 64-119 162-223 (608)
189 2qgz_A Helicase loader, putati 35.2 17 0.00057 28.0 1.9 45 82-126 212-264 (308)
190 1v5w_A DMC1, meiotic recombina 35.0 36 0.0012 26.4 3.8 53 73-125 204-278 (343)
191 3sxu_B DNA polymerase III subu 35.0 31 0.001 24.0 3.0 56 49-110 8-63 (138)
192 3u61_B DNA polymerase accessor 34.4 34 0.0012 25.7 3.5 47 84-131 105-156 (324)
193 4b4t_I 26S protease regulatory 34.0 69 0.0024 26.5 5.5 56 74-129 265-339 (437)
194 1u94_A RECA protein, recombina 32.8 99 0.0034 24.3 6.1 53 73-125 128-204 (356)
195 4b4t_L 26S protease subunit RP 32.0 1.5E+02 0.0051 24.2 7.2 84 46-129 231-338 (437)
196 1hqc_A RUVB; extended AAA-ATPa 31.7 64 0.0022 23.9 4.7 48 83-131 89-158 (324)
197 3eie_A Vacuolar protein sortin 30.8 1.6E+02 0.0054 22.2 6.9 54 76-129 102-172 (322)
198 2r2a_A Uncharacterized protein 30.8 49 0.0017 23.8 3.7 51 83-133 86-145 (199)
199 2b8t_A Thymidine kinase; deoxy 30.4 57 0.0019 24.1 4.1 37 84-121 89-126 (223)
200 3m0z_A Putative aldolase; MCSG 29.9 96 0.0033 23.7 5.2 63 45-112 148-211 (249)
201 1l8q_A Chromosomal replication 29.3 61 0.0021 24.3 4.2 38 82-119 96-139 (324)
202 3t15_A Ribulose bisphosphate c 29.1 1.4E+02 0.0046 22.4 6.1 18 112-129 156-173 (293)
203 2qz4_A Paraplegin; AAA+, SPG7, 28.7 1.4E+02 0.0047 21.2 5.9 54 76-129 90-163 (262)
204 1iqp_A RFCS; clamp loader, ext 28.4 61 0.0021 23.9 4.0 46 83-129 109-158 (327)
205 4b4t_M 26S protease regulatory 28.3 1.2E+02 0.0041 24.8 6.0 56 74-129 264-338 (434)
206 1ni3_A YCHF GTPase, YCHF GTP-b 28.3 1.2 4.2E-05 36.2 -6.0 27 84-110 139-167 (392)
207 1svm_A Large T antigen; AAA+ f 28.2 0.66 2.3E-05 37.6 -7.6 36 60-95 276-312 (377)
208 3hu3_A Transitional endoplasmi 28.1 83 0.0028 25.9 5.1 54 76-129 289-358 (489)
209 3m6y_A 4-hydroxy-2-oxoglutarat 27.8 1E+02 0.0034 23.9 5.0 63 45-112 171-234 (275)
210 4b4t_K 26S protease regulatory 27.7 1.1E+02 0.0039 24.8 5.8 54 76-129 257-329 (428)
211 4b4t_H 26S protease regulatory 27.3 1.4E+02 0.0049 24.7 6.3 56 74-129 292-366 (467)
212 2qp9_X Vacuolar protein sortin 26.1 1.5E+02 0.0052 22.8 6.1 54 76-129 135-205 (355)
213 3bos_A Putative DNA replicatio 25.6 49 0.0017 23.0 2.9 39 82-121 102-148 (242)
214 2chq_A Replication factor C sm 25.5 46 0.0016 24.5 2.8 48 83-131 101-152 (319)
215 1ypw_A Transitional endoplasmi 25.4 77 0.0026 27.8 4.6 56 74-129 287-358 (806)
216 3m6a_A ATP-dependent protease 24.6 22 0.00077 29.6 1.0 20 113-132 226-245 (543)
217 1jr3_D DNA polymerase III, del 24.2 1.8E+02 0.0063 21.8 6.2 40 76-115 68-110 (343)
218 1qvr_A CLPB protein; coiled co 24.1 68 0.0023 28.1 4.0 31 79-110 654-685 (854)
219 3pfi_A Holliday junction ATP-d 23.9 1.2E+02 0.0042 22.6 5.0 49 82-131 104-174 (338)
220 2zan_A Vacuolar protein sortin 23.6 1.6E+02 0.0055 23.5 5.9 53 77-129 220-289 (444)
221 1ne7_A Glucosamine-6-phosphate 23.4 32 0.0011 26.2 1.6 38 66-103 201-253 (289)
222 1k66_A Phytochrome response re 23.3 1.4E+02 0.0048 18.5 4.9 47 83-129 61-112 (149)
223 3bt7_A TRNA (uracil-5-)-methyl 22.2 70 0.0024 25.0 3.4 36 84-122 295-330 (369)
224 3vfd_A Spastin; ATPase, microt 22.2 1.4E+02 0.0049 23.1 5.3 55 77-131 200-272 (389)
225 1xwi_A SKD1 protein; VPS4B, AA 21.7 1.6E+02 0.0053 22.4 5.3 54 76-129 97-167 (322)
226 1d2n_A N-ethylmaleimide-sensit 21.4 1.6E+02 0.0055 21.3 5.2 17 77-93 117-133 (272)
227 1a5t_A Delta prime, HOLB; zinc 21.3 91 0.0031 23.8 3.8 49 83-132 107-159 (334)
228 1fs5_A Glucosamine-6-phosphate 21.2 32 0.0011 25.7 1.1 36 65-100 200-250 (266)
229 2qv0_A Protein MRKE; structura 20.8 1.6E+02 0.0055 18.3 6.3 44 83-129 54-101 (143)
230 3kl4_A SRP54, signal recogniti 20.7 1.5E+02 0.0053 24.1 5.3 33 75-107 170-205 (433)
231 2r5f_A Transcriptional regulat 20.6 17 0.00057 27.6 -0.6 41 55-95 217-259 (264)
232 1sxj_B Activator 1 37 kDa subu 20.6 77 0.0026 23.2 3.2 47 84-131 107-157 (323)
233 3f2k_A Histone-lysine N-methyl 20.1 44 0.0015 24.2 1.7 34 64-97 3-44 (226)
234 4a29_A Engineered retro-aldol 20.1 1.7E+02 0.0057 22.5 5.0 51 77-129 119-171 (258)
235 2gnp_A Transcriptional regulat 20.0 18 0.00061 27.4 -0.5 30 66-95 226-256 (266)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=3.4e-29 Score=205.91 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=100.7
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||++|+.++..... ....+ ..+++.++|+.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 114 ~~l~~~~TV~env~~~~~~~~---~~~~~--~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD 188 (366)
T 3tui_C 114 FNLLSSRTVFGNVALPLELDN---TPKDE--VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 188 (366)
T ss_dssp CCCCTTSCHHHHHHHHHHHSC---CCHHH--HHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 468889999999998743221 11122 5568999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .|||+.++.. |||++|.+
T Consensus 189 EPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~---vTHdl~~~~~~aDrv~vl~~ 239 (366)
T 3tui_C 189 QATSALDPATTRSILELLKDINRRLGLTILL---ITHEMDVVKRICDCVAVISN 239 (366)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 779999 8899999877 99999864
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=2.8e-29 Score=205.95 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=100.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++..... ....+ ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~---~~~~~--~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGK---GRTAQ--ERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSS---CCSHH--HHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CcCCCCCCHHHHHHHHHHHcC---CChHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 468899999999998743211 11122 4568899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+ .|.||+| .|||+.+|.. |||++|.+
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~---vTHd~~ea~~~aDri~vl~~ 214 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVF---VSHDREEALQYADRIAVMKQ 214 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHHCCEEEEEEC
Confidence 999999999999887632 2789999 8999999887 99999864
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=6e-29 Score=205.39 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=100.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++..... ....+ ..+++.++++.+|+.+..+++|.+|||||||||+|||||+.+|++||||
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAG---AKKEV--INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTT---CCHHH--HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcCCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 468999999999998753221 11122 5678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.|++| .|||+.+|.. |||+++.+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~---vTHd~~ea~~~aDri~vl~~ 209 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIY---VTHDQVEAMTLADKIVVLDA 209 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999998877433 779999 8899999887 99999864
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=1.7e-28 Score=190.04 Aligned_cols=121 Identities=25% Similarity=0.275 Sum_probs=95.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+||++|+.++............+ ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++|||
T Consensus 92 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 169 (235)
T 3tif_A 92 FNLIPLLTALENVELPLIFKYRGAMSGEE--RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169 (235)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSSCCCHHH--HHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccCCCCcHHHHHHHHHHhhhccCCCHHH--HHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 46788899999999864321100111112 45678899999999875 4999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. |.||++ .|||+..+.- |++++|.+
T Consensus 170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~---vtHd~~~~~~~d~i~~l~~ 220 (235)
T 3tif_A 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV---VTHDINVARFGERIIYLKD 220 (235)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---ECSCHHHHTTSSEEEEEET
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE---EcCCHHHHHhCCEEEEEEC
Confidence 99999999999998888542 779999 5666665433 99999864
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=2.7e-28 Score=199.79 Aligned_cols=118 Identities=16% Similarity=0.253 Sum_probs=99.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++.... .....+ ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 96 ~~l~~~ltv~eni~~~l~~~---~~~~~~--~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 170 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREK---RVPKDE--MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD 170 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 46889999999999874321 111122 4568899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.||++ .|||+.+|.. |+++++.+
T Consensus 171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~ 221 (355)
T 1z47_A 171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVF---VTHDQEEALEVADRVLVLHE 221 (355)
T ss_dssp STTCCSSHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887432 779999 7888888876 99999864
No 6
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=3.2e-28 Score=199.00 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++..... ....+ ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 91 ~~l~~~ltv~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD 165 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNMK---MSKEE--IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTSS---CCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHHcC---CCHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 468899999999998743211 11112 4567899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.|+++ .|||+.+|.. |+++++.+
T Consensus 166 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLV---VSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887532 679999 7888888876 99998864
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=3.5e-28 Score=199.32 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=98.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++...... ...+ ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~---~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRI---SKDE--VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCS---HHHH--TTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhcCC---CHHH--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4688999999999987432211 1112 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.|+++ .|||+.+|.. |+++++.+
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~~~~~adri~vl~~ 209 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVY---VTHDQAEAMTMASRIAVFNQ 209 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887432 679999 7888888876 99998864
No 8
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=4.5e-28 Score=199.38 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++.... .....+ ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 90 ~~l~~~ltv~eni~~~~~~~---~~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 164 (372)
T 1g29_1 90 YALYPHMTVYDNIAFPLKLR---KVPRQE--IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164 (372)
T ss_dssp CCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 45889999999999874321 111112 4567899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.|+++ .|||+.+|.. |++++|.+
T Consensus 165 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~ 215 (372)
T 1g29_1 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIY---VTHDQVEAMTMGDRIAVMNR 215 (372)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEE---ECCCHHHHHHhCCEEEEEeC
Confidence 9999999999998877432 679999 7888888876 99999864
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=7.1e-28 Score=185.16 Aligned_cols=118 Identities=24% Similarity=0.285 Sum_probs=94.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||.+|+.++...+. ..... ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKMG---KPKKE--AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHTT---CCHHH--HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred cccCCCCCHHHHHHhHHHHcC---CCHHH--HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 457788999999987642211 11112 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh-cCceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI-RNEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~-~~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||+++ +||+..+. .|++++|.+
T Consensus 166 EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~v---tHd~~~~~~~d~v~~l~~ 214 (224)
T 2pcj_A 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMV---THERELAELTHRTLEMKD 214 (224)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEE---CSCHHHHTTSSEEEEEET
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE---cCCHHHHHhCCEEEEEEC
Confidence 9999999999998888543 6799994 55555552 399998864
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=4.6e-28 Score=192.04 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
++.+||++|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 97 ~~~~tv~e~l~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt 171 (275)
T 3gfo_A 97 LFSASVYQDVSFGAVNM---KLPEDE--IRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171 (275)
T ss_dssp CCSSBHHHHHHHHHHTS---CCCHHH--HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred cccCcHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 34789999999874321 111122 4568899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. |.||++ .|||+.++.. |+|++|.+
T Consensus 172 s~LD~~~~~~i~~~l~~l~~~~g~tvi~---vtHdl~~~~~~~drv~~l~~ 219 (275)
T 3gfo_A 172 AGLDPMGVSEIMKLLVEMQKELGITIII---ATHDIDIVPLYCDNVFVMKE 219 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCCEEEE---EESCCSSGGGGCSEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHHHhhCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999998877432 779999 7788888866 99999864
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=3.7e-28 Score=199.41 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++.... .....+ ..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 84 ~~l~~~ltv~eni~~~~~~~---~~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELR---KAPREE--IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHT---TCCHHH--HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhc---CCCHHH--HHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 46889999999999874321 111122 4567899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+++.+. |.|+++ .|||+.+|.. |+++++.+
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~ 209 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVY---VTHDQAEALAMADRIAVIRE 209 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887543 679999 7888888876 99998864
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=6.6e-28 Score=189.45 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=97.0
Q ss_pred CCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 12 DSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
+.+++.+||++|+.++. ... .....+ ..+++.++++.+|+.+. .++++.+||||||||++|||||+.+|++||
T Consensus 102 ~~l~~~ltv~e~l~~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 102 FNLWSHMTVLENVMEAPIQVL---GLSKHD--ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp CCCCTTSCHHHHHHHHHHHTT---CCCHHH--HHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cccCCCCcHHHHHHhhHHHhc---CCCHHH--HHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45788899999998753 111 111112 34678899999999998 999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. |.||++ .|||+.++.. |+|++|.+
T Consensus 177 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVV---VTHEMGFARHVSSHVIFLHQ 228 (262)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999998888543 679999 6778887765 99998864
No 13
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=7.6e-28 Score=187.22 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=95.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||++|+.++...... .. ..+++.++++.+|+.+..++++++||||||||++|||||+++|++||||
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 151 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVER-----VE--RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCH-----HH--HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred CccCCCCcHHHHHHHHHHHcCC-----ch--HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3467889999999986422111 11 2457888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~d~i~~l~~ 202 (240)
T 2onk_A 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILH---VTHDLIEAAMLADEVAVMLN 202 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887532 679999 6677777655 99998864
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=1.1e-27 Score=188.73 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=97.0
Q ss_pred CCCCCCCCHHHHHHhhh-hhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISN-GMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+||++|+.++. ... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~---~~~~~~--~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVR---KWPREK--AEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTS---CCCHHH--HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcCCCCCCHHHHHHHHHHHHc---CCCHHH--HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45778899999998753 111 111112 346788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+. |.||++ .|||+.++.+ |++++|.+
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~ 234 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVV---VTHEMGFAREVGDRVLFMDG 234 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHhCCEEEEEEC
Confidence 99999999999998888543 679999 6778888765 99998864
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=5.3e-28 Score=199.08 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=95.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++..... ....+ ..+++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~---~~~~~--~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKK---FPKDE--IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp -----CCCHHHHHHTTCC--C---CCHHH--HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhcC---CCHHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 457899999999998743211 11112 4567899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+.+.+. |.|+++ .|||+.+|.. |+++++.+
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~---vTHd~~~a~~~adri~vl~~ 217 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY---VTHDQVEAMTMGDRIAVMNR 217 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887543 679999 7888888876 99998864
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=1.2e-27 Score=195.44 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=97.8
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+|+.+||++|+.++.... . ... . +++.++++.+||.+..++++++|||||||||+|||||+.+|++||||
T Consensus 81 ~~l~~~ltv~enl~~~~~~~---~--~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMK---K--IKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHH---C--CCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cccCCCCCHHHHHHHHHHHc---C--CCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 45789999999999864221 1 112 2 67889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+..+..+.+.++ |.|+++ .|||+.++.. |+++++.+
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~---vTHd~~~~~~~adri~vl~~ 203 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLH---ITHDQTEARIMADRIAVVMD 203 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE---EESCHHHHHHHCSEEEEESS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998887542 679999 7788888876 99999864
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.1e-27 Score=186.34 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=96.5
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||++|+.++.... .....+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 97 ~~l~~~ltv~enl~~~~~~~---~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 171 (256)
T 1vpl_A 97 AGAYRNMQGIEYLRFVAGFY---ASSSSE--IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 171 (256)
T ss_dssp CCCCTTSBHHHHHHHHHHHH---CCCHHH--HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCCCcHHHHHHHHHHHc---CCChHH--HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 35678899999998753221 111111 3457889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 172 EPts~LD~~~~~~l~~~l~~l~~~g~tiii---vtHd~~~~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 172 EPTSGLDVLNAREVRKILKQASQEGLTILV---SSHNMLEVEFLCDRIALIHN 221 (256)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEE---EECCHHHHTTTCSEEEEEET
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEE---EcCCHHHHHHHCCEEEEEEC
Confidence 9999999999998888543 679999 6677777765 99998864
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=1.6e-27 Score=187.82 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhc------CC
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN------NP 85 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~------~P 85 (137)
+.+++.+||.+|+.++.... .... ..+++.++++.+|+.+..++++.+||||||||++|||||++ +|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~-----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p 166 (266)
T 4g1u_C 94 SELAFPFSVSEVIQMGRAPY-----GGSQ--DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP 166 (266)
T ss_dssp CCCCSCCBHHHHHHGGGTTS-----CSTT--HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred CccCCCCCHHHHHHhhhhhc-----CcHH--HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 34567899999999864321 1122 45678899999999999999999999999999999999999 99
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 86 PIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
++|||||||+|||+.++..+++.+. +.||++ .|||+.++.. |+|++|.+
T Consensus 167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~---vtHdl~~~~~~~d~v~vl~~ 223 (266)
T 4g1u_C 167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC---VLHDLNLAALYADRIMLLAQ 223 (266)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE---EEcCHHHHHHhCCEEEEEEC
Confidence 9999999999999999998888543 358999 7888888876 99999864
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=1.9e-27 Score=186.05 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=95.7
Q ss_pred CCCCCCCHHHHHHhhhhh-hhHH--h-hh----hcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcC
Q psy317 13 SMDPKKTPLTRMQISNGM-MVLA--A-MF----NQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNN 84 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~-~~~~--~-~~----~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~ 84 (137)
.+++.+||.||+.++... .... . +. .......+++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 92 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~ 171 (257)
T 1g6h_A 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 171 (257)
T ss_dssp GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcC
Confidence 456789999999886422 1000 0 00 01111346788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 85 PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|++|||||||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 172 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI---IEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCCSTTGGGCSEEEEEET
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999998888543 679999 6677777655 99998864
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=3.5e-27 Score=182.96 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=95.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-CCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-L~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.+++.+||.||+.++.... ..... ..+++.++++.++ +.+..++++.+||||||||++|||||+.+|++|||
T Consensus 90 ~~l~~~ltv~enl~~~~~~~----~~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 90 RRIFPELTVYENLMMGAYNR----KDKEG--IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CCCCTTSBHHHHHHGGGTTC----CCSSH--HHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CccCCCCcHHHHHHHhhhcC----CCHHH--HHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45778899999998763111 01112 4467788999995 98889999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc--CceEEecC
Q psy317 91 DEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 91 DEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
||||+|||+.++..+++.+ .|.||++ .|||+.++.. |++++|.+
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILL---VEQNALGALKVAHYGYVLET 214 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE---EESCHHHHHHHCSEEEEEET
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999999999888854 3679999 6777777655 99998864
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=1.6e-26 Score=180.84 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=96.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||.+|+.++...... ..........+++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 75 ~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 75 FSSPFAYSVLDIVLMGRSTHIN-TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCSSCCBHHHHHHGGGGGGSC-TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CccCCCCCHHHHHHHhhhhhcc-cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3466789999999986421100 000001113467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+..+.+ |++++|.+
T Consensus 154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~---vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVF---TTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE---EESCHHHHHHHCSEEEEEET
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE---EecCHHHHHHhCCEEEEEeC
Confidence 9999999999998887532 679999 6778877755 99998864
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=1.2e-26 Score=182.38 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=94.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC--cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ--EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~--~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.++.+||++|+.++.... . .... ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++||||
T Consensus 90 ~~~~~tv~enl~~~~~~~-~---~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 163 (266)
T 2yz2_A 90 QFFAERVFDEVAFAVKNF-Y---PDRD--PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163 (266)
T ss_dssp GCCCSSHHHHHHHTTTTT-C---TTSC--SHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hcCCCcHHHHHHHHHHhc-C---CHHH--HHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 456799999999864221 1 1122 346788999999999 8899999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+..+.. |++++|.+
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~~g~tii~---vtHd~~~~~~~~d~v~~l~~ 213 (266)
T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVIL---ISHDIETVINHVDRVVVLEK 213 (266)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCCTTTGGGCSEEEEEET
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 9999999999998888543 679999 5667776654 99988864
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.7e-26 Score=179.98 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=88.2
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-CcccCccCCC-CCHHHHHHHHHHHHHhcCCCEEE
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-QEHKTTMTSN-LSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-~~~~~~~~~~-LSgGqkqrv~IArAL~~~P~iLl 89 (137)
+.+++.+|+.+|+.++............+ ..+++.++++.+|+ .+..++++++ ||||||||++|||||+.+|++||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll 166 (250)
T 2d2e_A 89 PVEVPGVTIANFLRLALQAKLGREVGVAE--FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166 (250)
T ss_dssp CC-CCSCBHHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE
T ss_pred CccccCCCHHHHHHHHHHhhccccCCHHH--HHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45678899999998753211100000011 34578889999999 5788999999 99999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. |.||+++| ||+..+. .|++++|.+
T Consensus 167 LDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt---Hd~~~~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVIT---HYQRILNYIQPDKVHVMMD 219 (250)
T ss_dssp EECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC---SSSGGGGTSCCSEEEEEET
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe---cCHHHHHHhcCCEEEEEEC
Confidence 999999999999998888543 67999955 5555544 389988864
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=4.9e-26 Score=180.56 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=92.4
Q ss_pred CCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 16 PKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
..+||++|+.++...... ......+ ..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDE--IRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHH--HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred CCCCHHHHHHhhhhhccccccCCcHH--HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 357999999876321100 0001111 3467889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc-----ccee--eeeccccchhhhhhc--CceEEecC
Q psy317 95 SPLHKAEFTPKYERKV-----DTKV--DYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~-----~~~v--~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||+.++..+++.+. |.|| ++ .+||+.++.. |++++|.+
T Consensus 190 s~LD~~~~~~l~~~l~~l~~~g~tv~~ii---vtHd~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 190 AGLDFIARESLLSILDSLSDSYPTLAMIY---VTHFIEEITANFSKILLLKD 238 (279)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCTTCEEEE---EESCGGGCCTTCCEEEEEET
T ss_pred cccCHHHHHHHHHHHHHHHHCCCEEEEEE---EecCHHHHHHhCCEEEEEEC
Confidence 9999999998888543 6789 99 6778887765 99998864
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=3.9e-26 Score=175.12 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=91.4
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+||++|+.++.... .. .. ..+++.++++.+|+.+. ++++.+||||||||++|||||+.+|++||||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLY---GV--KV--NKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHT---TC--CC--CHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CcCCCCCCHHHHHHHHHHhc---CC--ch--HHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34678899999998763211 10 11 24567889999999988 9999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEec
Q psy317 92 EPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|||+|||+.++..+++.+. |.+|++ .+||+..+.. |++++++
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiii---vtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYS 207 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEE---EESSCCTTSSEEEEGGGGB
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEeC
Confidence 9999999999998888543 679999 5566666655 7776654
No 26
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.2e-25 Score=175.58 Aligned_cols=115 Identities=17% Similarity=0.072 Sum_probs=93.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
++...+ .+|+.+|+.++.... .. ..+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~Q~~~l-~~tv~enl~~~~~~~-------~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 150 (263)
T 2pjz_A 81 PEAYEI-GVTVNDIVYLYEELK-------GL--DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV 150 (263)
T ss_dssp GGGSCT-TSBHHHHHHHHHHHT-------CC--CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCCcc-CCcHHHHHHHhhhhc-------ch--HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 333334 889999998753211 12 245688899999999 8899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhccc--eeeeeccccchhhhhhc--C-ceEEecC
Q psy317 89 FFDEPTSPLHKAEFTPKYERKVDT--KVDYTGNRTQNLQQTIR--N-EVCLISD 137 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~~~--~v~~~~~~~~~~~~~~~--~-~~~~~~~ 137 (137)
||||||+|||+.++..+++.+... ||++ .|||+..+.. | ++++|.+
T Consensus 151 lLDEPts~LD~~~~~~l~~~L~~~~~tvii---vtHd~~~~~~~~d~~i~~l~~ 201 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISRYIKEYGKEGIL---VTHELDMLNLYKEYKAYFLVG 201 (263)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHSCSEEEE---EESCGGGGGGCTTSEEEEEET
T ss_pred EEECCccccCHHHHHHHHHHHHHhcCcEEE---EEcCHHHHHHhcCceEEEEEC
Confidence 999999999999999998876533 8999 6677777655 8 9988854
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=1.5e-25 Score=175.20 Aligned_cols=113 Identities=17% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC-----
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP----- 86 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~----- 86 (137)
+.+++.+||++|+.++.... . . .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~---~----~---~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQHDK---T----R---TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp CCCCTTCBHHHHHHTTCSST---T----C---HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred CccCCCCcHHHHHHHhhccC---C----c---HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence 34677899999998752110 0 1 3467789999999999999999999999999999999999999
Q ss_pred --EEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc--CceEEecC
Q psy317 87 --IMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 87 --iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
+|||||||+|||+.++..+++.+. |.||++ .+||+..+.. |++++|.+
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii---vtHd~~~~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM---SSHDLNHTLRHAHRAWLLKG 208 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999998888543 679999 6677777754 99998863
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.92 E-value=1e-24 Score=171.68 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=92.3
Q ss_pred CCCCCCCCHHHHHHhhhh-hhhHHhhhh-cchhHHHHHHHHHHHcCCC-cccCccCC-CCCHHHHHHHHHHHHHhcCCCE
Q psy317 12 DSMDPKKTPLTRMQISNG-MMVLAAMFN-QSQAGSCFISEILDTLGLQ-EHKTTMTS-NLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~-~~~~~~~~~-~~~~~~~~~~~~L~~lgL~-~~~~~~~~-~LSgGqkqrv~IArAL~~~P~i 87 (137)
+.+++.+|+.+|+.++.. ......... ......+++.++++.+|+. ...++++. +||||||||++|||||+.+|++
T Consensus 106 ~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 106 PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCE
Confidence 457888999999986531 110000000 0111345788999999996 57788887 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh---cCceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI---RNEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~---~~~~~~~~~ 137 (137)
|||||||+|||+.++..+++.+. |.||++ .|||+..+. .|++++|.+
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii---vtHd~~~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFII---VTHYQRILDYIKPDYVHVLYQ 240 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE---ECSSGGGGGTSCCSEEEEEET
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EeeCHHHHHhhcCCEEEEEEC
Confidence 99999999999999999988643 569999 455555553 489988853
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.92 E-value=2.8e-25 Score=175.34 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=88.7
Q ss_pred CCCCCCCHHHHHHhhhhhhhH-HhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy317 13 SMDPKKTPLTRMQISNGMMVL-AAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMF 89 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLl 89 (137)
.+++ .||++|+.++...... ... ........+.++++.+ |+....++++.+||||||||++|||||+.+|++||
T Consensus 103 ~l~~-~tv~enl~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll 179 (271)
T 2ixe_A 103 LLFG-RSFRENIAYGLTRTPTMEEI--TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179 (271)
T ss_dssp CCCS-SBHHHHHHTTCSSCCCHHHH--HHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cccc-ccHHHHHhhhcccCChHHHH--HHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3454 6999999986321100 000 0000122356778888 78888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc-CceEEecC
Q psy317 90 FDEPTSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||||+|||+.++..+++.+. |.||++ .|||+..+.. |++++|.+
T Consensus 180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii---vtHd~~~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLL---ITQQLSLAERAHHILFLKE 231 (271)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE---ECSCHHHHTTCSEEEEEET
T ss_pred EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE---EeCCHHHHHhCCEEEEEEC
Confidence 999999999999998888542 669999 5556665544 99998864
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=1.2e-24 Score=169.58 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHH
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL 81 (137)
.++ ..||++|+.++.. . . ..+++.++++.+++.+. .++++.+||||||||++|||||
T Consensus 93 ~l~-~~tv~enl~~~~~-----~----~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 93 VLL-NRSIIDNISLANP-----G----M--SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp CCT-TSBHHHHHTTTCT-----T----C--CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred ccc-cccHHHHHhccCC-----C----C--CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 344 4799999987521 0 0 12234556666666544 3455689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
+.+|++|||||||+|||+.++..+++.+. |.||+++| ||+..+.. |++++|.+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivt---H~~~~~~~~d~v~~l~~ 218 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA---HRLSTVKNADRIIVMEK 218 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEEC---SSGGGGTTSSEEEEEET
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe---CCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999888554 67999955 55554444 99998864
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.90 E-value=4.2e-24 Score=171.74 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=84.9
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
++...+...||++|+.++......... ........+.+.++.+ |++...++++.+||||||||++|||||+.+|+|
T Consensus 134 ~Q~~~lf~~Tv~eNi~~~~~~~~~~~~--~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 134 PQDTVLFNDTIADNIRYGRVTAGNDEV--EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp CSSCCCCSEEHHHHHHTTSTTCCHHHH--HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ecCCccCcccHHHHHHhhcccCCHHHH--HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 344444467999999986421100000 0000000112233333 455556777889999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||||||+|||+.+...+++.+. +.||++ .+|++..+.. |+|++|.+
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~---itH~l~~~~~aD~i~vl~~ 263 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCANRTTIV---VAHRLSTVVNADQILVIKD 263 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEE---ECCSHHHHHTCSEEEEEET
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE---EEcChHHHHcCCEEEEEEC
Confidence 99999999999999998887554 679999 5667766666 99998864
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=9e-24 Score=165.69 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=82.4
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHHHHH
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IArAL 81 (137)
.++ ..||++|+.++.. . .. .+++.+.++.+++.+. .++++.+||||||||++|||||
T Consensus 103 ~l~-~~tv~enl~~~~~----~----~~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 103 ILF-NETIKYNILYGKL----D----AT---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp CCC-SEEHHHHHHTTCT----T----CC---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred ccc-ccCHHHHHhccCC----C----CC---HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 344 4799999987521 0 01 1244556676666443 3467889999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
+.+|++|||||||+|||+.++..+++.+. +.||+++|| |+..+.. |++++|.+
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH---~~~~~~~~d~i~~l~~ 228 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH---RLSTISSAESIILLNK 228 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECS---SGGGSTTCSEEEEEET
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcC---CHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887543 679999555 4544433 99998864
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=7.4e-24 Score=164.05 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=82.8
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHH---HHHHHcCCC-----cccCccCCCCCHHHHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFIS---EILDTLGLQ-----EHKTTMTSNLSGGQKKRLSIALEL 81 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~---~~L~~lgL~-----~~~~~~~~~LSgGqkqrv~IArAL 81 (137)
++...++.+|+++|+.++.... .+ ..+++. ++++.+++. ...++++.+||||||||++|||||
T Consensus 72 ~Q~~~~~~~tv~enl~~~~~~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 72 PQQAWIQNDSLRENILFGCQLE-------EP--YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp CSSCCCCSEEHHHHHHTTSCCC-------TT--HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred cCCCcCCCcCHHHHhhCccccC-------HH--HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3334456899999998753211 01 111111 123333332 235788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhh-------ccceeeeeccccchhhhhhcCceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERK-------VDTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+.+|++|||||||+|||+.++..+++.+ .+.||+++||....+. ..|++++|.+
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~l~~ 203 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIVMSG 203 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEEEET
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEEEeC
Confidence 9999999999999999999999998866 2679999665544332 2499998864
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=2.8e-24 Score=166.70 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=84.1
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHHHHHHh
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~IArAL~ 82 (137)
+++ .|+++|+.++... . . ..+++.++++.+++.+..+ +++.+||||||||++|||||+
T Consensus 87 l~~-~tv~enl~~~~~~----~----~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~ 155 (243)
T 1mv5_A 87 IMA-GTIRENLTYGLEG----D----Y--TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155 (243)
T ss_dssp CCC-EEHHHHTTSCTTS----C----S--CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ccc-ccHHHHHhhhccC----C----C--CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence 444 6999999875210 1 1 1235667888888876554 346799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhh-cCceEEecC
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTI-RNEVCLISD 137 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~-~~~~~~~~~ 137 (137)
++|++|||||||+|||+.++..+++.+. +.||+++|| |+..+. .|++++|.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH---~~~~~~~~d~v~~l~~ 212 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH---RLSTIVDADKIYFIEK 212 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECC---SHHHHHHCSEEEEEET
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeC---ChHHHHhCCEEEEEEC
Confidence 9999999999999999999998887543 679999554 555443 399998864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=3.2e-23 Score=159.64 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=61.9
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhhc-CceEE
Q psy317 61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTIR-NEVCL 134 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~~-~~~~~ 134 (137)
++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ .+.||+++| ||+..+.. |++++
T Consensus 125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vt---H~~~~~~~~d~v~~ 201 (229)
T 2pze_A 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKMEHLKKADKILI 201 (229)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEEC---CCHHHHHHCSEEEE
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEc---CChHHHHhCCEEEE
Confidence 4457899999999999999999999999999999999999999998852 267999955 55554433 99998
Q ss_pred ecC
Q psy317 135 ISD 137 (137)
Q Consensus 135 ~~~ 137 (137)
|.+
T Consensus 202 l~~ 204 (229)
T 2pze_A 202 LHE 204 (229)
T ss_dssp EET
T ss_pred EEC
Confidence 864
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.89 E-value=7.8e-24 Score=175.15 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=87.2
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCC-----------CCHHHHHHHHHHHHH
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSN-----------LSGGQKKRLSIALEL 81 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~-----------LSgGqkqrv~IArAL 81 (137)
.+| .+||++|+.+.. .. ..+++.++++.+++.+..++++.+ |||||||||+|||||
T Consensus 104 ~lf-~~tv~enl~~~~----------~~--~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 104 FIF-SGTFRKNLDPNA----------AH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp CCC-SEEHHHHHCTTC----------CS--CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred ccC-ccCHHHHhhhcc----------cc--CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 344 479999996421 01 234677899999999999999988 999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
+.+|++|||||||+|||+..+..+.+.+. +.|++++||..+.+. ..||++++.+
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~--~aDri~vl~~ 228 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML--ECDQFLVIEE 228 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT--TCSEEEEEET
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH--hCCEEEEEEC
Confidence 99999999999999999999998887654 669999555433221 1399998864
No 37
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=2.8e-23 Score=177.62 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
...+||.+|+.+.... .. .. ....+.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 342 ~~~~tv~~~l~~~~~~----~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 342 NYDGTVQQYLENASKD----AL--ST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CCSSBHHHHHHHHCSS----TT--CT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCCCHHHHHHHhhhh----cc--ch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3478999998763211 00 01 2245778899999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 95 SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 95 sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+|||+.++..+++.+. |.||++ .+||+.++.. |||+++.
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~---vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFI---IDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence 9999999998887543 679999 8899999887 9999985
No 38
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-22 Score=175.30 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt 94 (137)
....|+.+++.... . .. .. ....+.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 425 ~~~~tv~e~~~~~~--~--~~---~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 425 KFPGTVRQLFFKKI--R--GQ---FL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CCCSBHHHHHHHHC--S--ST---TT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred cCCccHHHHHHHHh--h--cc---cc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 34568998875321 1 01 01 2345678899999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHhh------ccceeeeeccccchhhhhhc--CceEEec
Q psy317 95 SPLHKAEFTPKYERK------VDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 95 sgLD~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
+|||+.++..+++.+ .|.||++ .+||+.++.. |||+++.
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tvii---vtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFI---VEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEECE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence 999999998877643 2779999 8899999887 9999875
No 39
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=2.7e-22 Score=173.66 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=91.7
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
.++.+||.+++.... . ... . ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 428 ~~~~~tv~e~~~~~~--~--~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 428 AEYEGTVYELLSKID--S--SKL--N---SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp CCCSSBHHHHHHHHH--H--HHH--H---CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCCCcHHHHHHhhh--c--cCC--C---HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 346789988876431 1 110 1 134677899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|+|||+.++..+++.+. |.||++ .+||+.++.. ||++++.
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~---vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALV---VEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEc
Confidence 99999999998887533 679999 7888888876 9999885
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.87 E-value=4.6e-22 Score=158.62 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=59.7
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-----ccceeeeeccccchhhhhh-cCceEE
Q psy317 61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-----VDTKVDYTGNRTQNLQQTI-RNEVCL 134 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~-~~~~~~ 134 (137)
++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ .+.||+++| ||+..+. .|++++
T Consensus 154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivt---Hd~~~~~~~d~i~~ 230 (290)
T 2bbs_A 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKMEHLKKADKILI 230 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEEC---CCHHHHHHSSEEEE
T ss_pred cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEe---cCHHHHHcCCEEEE
Confidence 4456899999999999999999999999999999999999999998853 267999955 4554443 399998
Q ss_pred ecC
Q psy317 135 ISD 137 (137)
Q Consensus 135 ~~~ 137 (137)
|.+
T Consensus 231 l~~ 233 (290)
T 2bbs_A 231 LHE 233 (290)
T ss_dssp EET
T ss_pred EEC
Confidence 864
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=2.6e-22 Score=171.39 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy317 14 MDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93 (137)
Q Consensus 14 l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP 93 (137)
..+.+||.+++.... . . .. . ..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 358 ~~~~~tv~~~~~~~~--~-~-~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP 428 (538)
T 1yqt_A 358 ADYEGTVYELLSKID--A-S-KL---N--SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428 (538)
T ss_dssp CCCSSBHHHHHHHHH--H-H-HH---T--CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCCCcHHHHHHhhh--c-c-CC---C--HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 346789988775321 1 1 11 1 234677899999999889999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc--CceEEec
Q psy317 94 TSPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 94 tsgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
|+|||+.++..+++.+. |.+|++ .+||+.++.. ||++++.
T Consensus 429 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~---vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALV---VEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEE---ECSCHHHHHHHCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEE---EeCCHHHHHHhCCEEEEEe
Confidence 99999999998888532 779999 7888888876 9999885
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=3.3e-22 Score=171.87 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=85.6
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCccc-----------CccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK-----------TTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~-----------~~~~~~LSgGqkqrv~IA 78 (137)
++...+.+.|++||+.++.... . .. .++++.++++.+|+.+.. ++++.+||||||||++||
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~--~----~~--~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDP--S----SV--TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSST--T----TS--CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred ccCCcccCCCHHHHHhhcCCCc--c----cc--CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 3433333569999999863210 0 11 234567778888775432 334589999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||+++|++|||||||+|||+.++..+.+.+. +.|+++.||+ +..+.. |+++++.+
T Consensus 496 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~---~~~~~~~d~i~~l~~ 556 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR---LSTIKNANMVAVLDQ 556 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCC---HHHHHHSSEEEEEET
T ss_pred HHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecC---HHHHHcCCEEEEEEC
Confidence 99999999999999999999999998887543 6799995554 444433 99998864
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=3.7e-22 Score=171.14 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=84.5
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-----------cCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-----------KTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-----------~~~~~~~LSgGqkqrv~IA 78 (137)
|+...+.+.|++||+.++.. . . . .++++.+.++.+|+.+. .++++.+||||||||++||
T Consensus 423 ~Q~~~l~~~tv~eni~~~~~---~-~----~--~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 423 SQNVHLFNDTVANNIAYART---E-E----Y--SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp CSSCCCCSSBHHHHHHTTTT---S-C----C--CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred ccCCcCCCCCHHHHHhccCC---C-C----C--CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 34433334699999997531 0 0 1 12345566666666543 3456689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|++|||||||+|||+.++..+.+.+. |.|+++.||+.+.+. ..|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l~~ 553 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE--QADEIVVVED 553 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT--TCSEEEEEET
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH--hCCEEEEEEC
Confidence 99999999999999999999999998887543 679999655554332 1399998864
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2e-22 Score=173.26 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=84.7
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPI 87 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~i 87 (137)
|+...+.+.|++||+.++......... .+......+.+.++.+ |++...++++.+||||||||++|||||+++|++
T Consensus 423 ~Q~~~lf~~tv~eni~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 423 PQETVLFSGTIKENLKWGREDATDDEI--VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp CSSCCCCSEEHHHHHTTTCSSCCHHHH--HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCcCcCccHHHHHhccCCCCCHHHH--HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 444444456999999876321000000 0000000112233333 566667888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||||||++||+.+...+.+.+. |.|+++ .+|++..+.. |+++++.+
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~---itH~l~~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFI---ITQKIPTALLADKILVLHE 552 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE---EESCHHHHTTSSEEEEEET
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE---EecChHHHHhCCEEEEEEC
Confidence 99999999999999998888543 679999 5555555545 99998864
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=3.5e-22 Score=171.28 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=84.4
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCccc-----------CccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHK-----------TTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~-----------~~~~~~LSgGqkqrv~IA 78 (137)
|+...+.+.|++||+.++.. .. . .++++.++++.+|+.+.. ++++.+||||||||++||
T Consensus 423 ~Q~~~l~~~tv~eni~~~~~----~~----~--~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 423 SQNVHLFNDTIANNIAYAAE----GE----Y--TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred cCCCccccccHHHHHhccCC----CC----C--CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 34333334699999987531 00 1 123455667777665443 445689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
|||+++|++|||||||+|||+.++..+.+.+. |.|+++.||+.+.+. ..|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~d~i~~l~~ 553 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE--QADEILVVDE 553 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH--hCCEEEEEEC
Confidence 99999999999999999999999998887543 679999555544432 2399998864
No 46
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.87 E-value=8.3e-22 Score=168.98 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=81.9
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCC-----------CcccCccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGL-----------QEHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL-----------~~~~~~~~~~LSgGqkqrv~IA 78 (137)
++...+.+.|++||+.++... . .++++.+.++..++ +...++++.+||||||||++||
T Consensus 421 ~Q~~~l~~~tv~eni~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 421 QQDNILFSDTVKENILLGRPT--------A---TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp CSSCCCCSSBHHHHHGGGCSS--------C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eCCCccCcccHHHHHhcCCCC--------C---CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 344434456999999876310 0 11233344444444 3344556679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||+++|++|||||||+|||+.+...+.+.+ .+.|+++.| |++..+.. |+++++.+
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it---H~l~~~~~~d~i~~l~~ 550 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA---HRLSTITHADKIVVIEN 550 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC---SSGGGTTTCSEEEEEET
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe---cCHHHHHcCCEEEEEEC
Confidence 9999999999999999999999998887754 367999954 55555444 99998864
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=3.8e-22 Score=172.70 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN 119 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~ 119 (137)
+++.++++.+|+.+..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.+. |.||++
T Consensus 207 ~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi--- 283 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV--- 283 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---
T ss_pred HHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE---
Confidence 356789999999999999999999999999999999999999999999999999999998877544 779999
Q ss_pred ccchhhhhhc--CceEEec
Q psy317 120 RTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~ 136 (137)
.+||+.++.. |+|++|.
T Consensus 284 vsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 284 VEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp ECSCHHHHHHHCSEEEEEE
T ss_pred EecChHHHHhhCCEEEEEC
Confidence 7778887765 9999875
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=3.4e-22 Score=170.71 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeecc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGN 119 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~ 119 (137)
+++.++++.+|+....++++++|||||||||+|||||+.+|++|||||||++||+.++..+++.+. |.||++
T Consensus 137 ~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~--- 213 (538)
T 1yqt_A 137 GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV--- 213 (538)
T ss_dssp SCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE---
T ss_pred HHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE---
Confidence 357789999999999999999999999999999999999999999999999999999988877543 779999
Q ss_pred ccchhhhhhc--CceEEec
Q psy317 120 RTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~ 136 (137)
.+||+.++.. |+|++|.
T Consensus 214 vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEE
T ss_pred EeCCHHHHHHhCCEEEEEc
Confidence 6778888766 9999874
No 49
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=5.3e-22 Score=170.88 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=82.1
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccC-----------ccCCCCCHHHHHHHHHH
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKT-----------TMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~-----------~~~~~LSgGqkqrv~IA 78 (137)
++...+.+.|++||+.++.. .. . ++++.+.++.+++.+..+ +.+.+||||||||++||
T Consensus 435 ~Q~~~lf~~tv~eni~~~~~----~~----~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 435 LQDTILFSTTVKENLKYGNP----GA----T---DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp CTTCCCCSSBHHHHHHSSST----TC----C---TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred eCCCccccccHHHHHhcCCC----CC----C---HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 34444446799999987631 00 1 122344555555544433 34479999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 79 LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||+++|++|||||||||||+.+...+.+.+. |.|+++.||+.+ .+.. |+++++.+
T Consensus 504 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~---~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN---TIKNADLIIVLRD 564 (598)
T ss_dssp HHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT---HHHHCSEEEEECS
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH---HHHcCCEEEEEEC
Confidence 99999999999999999999999998877543 779999555554 4444 99998864
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-21 Score=169.27 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeec
Q psy317 44 SCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTG 118 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~ 118 (137)
.+++.++++.+|+....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.++ |.||++
T Consensus 199 ~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~-- 276 (608)
T 3j16_B 199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC-- 276 (608)
T ss_dssp HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE--
T ss_pred HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE--
Confidence 3578899999999999999999999999999999999999999999999999999999988777543 679999
Q ss_pred cccchhhhhhc--CceEEec
Q psy317 119 NRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~ 136 (137)
.+||+.++.. |+|++|.
T Consensus 277 -vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 277 -VEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp -ECSCHHHHHHHCSEEEEEE
T ss_pred -EeCCHHHHHHhCCEEEEEe
Confidence 7788888776 9999884
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=5.4e-22 Score=172.44 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhc-c---hhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCC--E
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQ-S---QAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPP--I 87 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~-~---~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~--i 87 (137)
++.+|+.+|+.+............. . .+.. ...++++.+||.+. .++++.+|||||||||+|||||+.+|+ +
T Consensus 147 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l 225 (670)
T 3ux8_A 147 VTAMSVTEALAFFDGLELTEKEAQIARLILREIR-DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 225 (670)
T ss_dssp ----CC--------------------------CH-HHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE
T ss_pred ccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH-HHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 4568999998864322111100000 0 0011 12246899999875 689999999999999999999999998 9
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
|||||||+|||+.++..+++.+. |.||++ .|||+..+.. |++++|
T Consensus 226 LlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~---vtHd~~~~~~~d~ii~l 276 (670)
T 3ux8_A 226 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV---VEHDEDTMLAADYLIDI 276 (670)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE---ECCCHHHHHHCSEEEEE
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE---EeCCHHHHhhCCEEEEe
Confidence 99999999999999999888543 679999 6667766544 999988
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=5e-21 Score=166.33 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE 92 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE 92 (137)
.+|+.+|+.+.... . ..+++.+.+..+|+.. ..++++.+|||||||||+|||||+.+| ++|||||
T Consensus 504 ~ltv~e~l~~~~~~---------~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE 572 (670)
T 3ux8_A 504 DMTVEDALDFFASI---------P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE 572 (670)
T ss_dssp TSBHHHHHHHTTTC---------H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES
T ss_pred hCCHHHHHHHHHHh---------h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC
Confidence 47888888754211 1 1234567888999965 468999999999999999999999987 4999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
||+|||+.++..+++.+. |.||++ .|||+..+.. |+|++|
T Consensus 573 Pt~~LD~~~~~~i~~~l~~l~~~g~tvi~---vtHd~~~~~~~d~i~~l 618 (670)
T 3ux8_A 573 PTTGLHVDDIARLLDVLHRLVDNGDTVLV---IEHNLDVIKTADYIIDL 618 (670)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHTTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEE---EeCCHHHHHhCCEEEEe
Confidence 999999999998888543 779999 6777776654 999998
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=2.2e-21 Score=165.89 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT 121 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~ 121 (137)
++.++++.+|+....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.++ |.||++ .+
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~---vs 194 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV---VD 194 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE---EC
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE---EE
Confidence 56789999999999999999999999999999999999999999999999999999988877544 679999 67
Q ss_pred chhhhhhc--CceEEec
Q psy317 122 QNLQQTIR--NEVCLIS 136 (137)
Q Consensus 122 ~~~~~~~~--~~~~~~~ 136 (137)
||+.++.. |+|+++.
T Consensus 195 Hdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp SCHHHHHHHCSEEEEEE
T ss_pred eChHHHHhhCCEEEEec
Confidence 77777666 9998874
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=8.9e-21 Score=171.29 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
.+++.+|+.+|+.+. .. .. .+++.++++.+|+. ...++++++||||||||++|||||+.+|++||||
T Consensus 506 ~~~~~ltv~e~l~~~--~~-------~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 506 GTHSDTSVLDFVFES--GV-------GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp CCCTTSBHHHHHHTT--CS-------SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccCCcHHHHHHHh--hc-------CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 456789999999751 10 01 34677899999995 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc--CceEEecC
Q psy317 92 EPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 137 (137)
|||+|||+.++..+++.+. |.||++ .+||+.++.. |++++|.+
T Consensus 574 EPTs~LD~~~~~~l~~~L~~~g~tvIi---vSHdl~~l~~~adrii~L~~ 620 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNTCGITSIT---ISHDSVFLDNVCEYIINYEG 620 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHHSCSEEEE---ECSCHHHHHHHCSEEEEEET
T ss_pred CCccCCCHHHHHHHHHHHHhCCCEEEE---EECCHHHHHHhCCEEEEEEC
Confidence 9999999999999988665 789999 6777777765 89988753
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=5.8e-20 Score=169.57 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=83.3
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~I 77 (137)
.|+...+.+.|+++|+.++..... . ..+.+.+.++..++.+ .....+.+||||||||++|
T Consensus 1112 v~Q~~~l~~~ti~eNi~~~~~~~~-------~--~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1112 VSQEPILFDCSIAENIAYGDNSRV-------V--SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp EESSCCCCSSBHHHHHTCCCSSCC-------C--CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred ECCCCccccccHHHHHhccCCCCC-------C--CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence 345555667899999987632110 0 1122333344444332 3344567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
||||+++|+||||||||+|||+.+...+.+.+. |.||++ .+||+..+.. |+++++.+
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~---isH~l~~i~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV---IAHRLSTIQNADLIVVIQN 1244 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE---ECSCTTGGGSCSEEEEEET
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE---EecCHHHHHcCCEEEEEEC
Confidence 999999999999999999999999988887554 679999 5555555544 99998864
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.80 E-value=1e-19 Score=167.90 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=82.3
Q ss_pred cCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHH-----HHHHHHHHc--CCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317 10 IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSC-----FISEILDTL--GLQEHKTTMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 10 ~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~-----~~~~~L~~l--gL~~~~~~~~~~LSgGqkqrv~IArAL~ 82 (137)
++...+.+.|++||+.++.... .. ++ ..+ .+.+.++.+ |++...+.++.+||||||||++|||||+
T Consensus 470 ~Q~~~l~~~ti~eNi~~g~~~~-~~----~~--~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 470 SQEPVLFATTIAENIRYGREDV-TM----DE--IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp CSSCCCCSSCHHHHHHHHCSSC-CH----HH--HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred cCCCccCCccHHHHHhcCCCCC-CH----HH--HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 4444444569999999864210 00 00 111 122334443 3444556778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
.+|+|||||||||+||+.+...+.+.+ .|.|+++ .+|++..... |+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~---itH~l~~i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIV---IAHRLSTVRNADVIAGFDG 599 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEE---ECSCHHHHTTCSEEEECSS
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEE---EecCHHHHHcCCEEEEEEC
Confidence 999999999999999999988776644 3779999 4555555544 99998864
No 57
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=2e-19 Score=161.76 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=84.4
Q ss_pred CCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q psy317 17 KKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDE 92 (137)
Q Consensus 17 ~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDE 92 (137)
.+|+.+++.+.... . ...++.++|+.+||... .++++.+|||||||||.|||||+.+| ++|||||
T Consensus 766 ~~tv~eal~f~~~~---------~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDE 834 (916)
T 3pih_A 766 DMTVDEALEFFKNI---------P--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDE 834 (916)
T ss_dssp SSBHHHHHHHTTTC---------H--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEES
T ss_pred hCCHHHHHHHHhcc---------h--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEEC
Confidence 46777777653211 1 23466789999999764 58899999999999999999999875 7999999
Q ss_pred CCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317 93 PTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
||+|||+..+..+++.+. |.||++ .+||+..+.. |++++|
T Consensus 835 PTsGLD~~~~~~L~~lL~~L~~~G~TVIv---I~HdL~~i~~ADrIivL 880 (916)
T 3pih_A 835 PTVGLHFEDVRKLVEVLHRLVDRGNTVIV---IEHNLDVIKNADHIIDL 880 (916)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEE---ECCCHHHHTTCSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhCCEEEEe
Confidence 999999999998888544 779999 6777776655 999988
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=6.4e-20 Score=165.71 Aligned_cols=91 Identities=27% Similarity=0.308 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCc-c-cCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeecc
Q psy317 44 SCFISEILDTLGLQE-H-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGN 119 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~-~-~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~ 119 (137)
.+++.++++.+|+.. . .++++++||||||||+.|||||+.+|++|||||||+|||+.++..+++.+. +.+|++
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIi--- 953 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVII--- 953 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEE---
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEE---
Confidence 457889999999975 3 588999999999999999999999999999999999999999999988766 569999
Q ss_pred ccchhhhhhc--CceEEecC
Q psy317 120 RTQNLQQTIR--NEVCLISD 137 (137)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~ 137 (137)
.+||+.++.. |+++++.+
T Consensus 954 ISHD~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 954 ITHSAEFTKNLTEEVWAVKD 973 (986)
T ss_dssp ECSCHHHHTTTCCEEECCBT
T ss_pred EECCHHHHHHhCCEEEEEEC
Confidence 7788888766 99998864
No 59
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.80 E-value=1.6e-19 Score=131.29 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=60.4
Q ss_pred cCccCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh
Q psy317 60 KTTMTSNLSGGQKKRLSIA------LELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IA------rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~ 128 (137)
.++++.+||||||||++|| |||+.+|+++||||||+|||+..+..+.+.+. |.+|+++||.. ++. ..
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~-~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK-DA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG-GG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHH-Hh
Confidence 4678999999999999886 89999999999999999999999998887543 56899966554 222 22
Q ss_pred cCceEEe
Q psy317 129 RNEVCLI 135 (137)
Q Consensus 129 ~~~~~~~ 135 (137)
.|+++++
T Consensus 129 ~d~ii~l 135 (148)
T 1f2t_B 129 ADHVIRI 135 (148)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 3898887
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=3.4e-19 Score=160.58 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317 46 FISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY 116 (137)
Q Consensus 46 ~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~ 116 (137)
++.++|+.+||.. ..++++.+|||||||||.||++|+.+| ++|||||||+|||+..+..+++.+. |.||++
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567899999987 789999999999999999999999865 9999999999999999998888543 779999
Q ss_pred eccccchhhhhhc-CceEEe
Q psy317 117 TGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~~ 135 (137)
.+||+.++.. |+|++|
T Consensus 904 ---isHdl~~i~~aDrIivL 920 (972)
T 2r6f_A 904 ---IEHNLDVIKTADYIIDL 920 (972)
T ss_dssp ---ECCCHHHHTTCSEEEEE
T ss_pred ---EcCCHHHHHhCCEEEEE
Confidence 5666666544 999988
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=2.4e-19 Score=165.85 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=87.7
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCc-----------ccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQE-----------HKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~-----------~~~~~~~~LSgGqkqrv~I 77 (137)
-|+...+.+-|+++|+.++... .. . .++++.+.++..++.+ .......+||||||||++|
T Consensus 1158 V~Qdp~LF~gTIreNI~~gld~---~~----~--sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1158 VSQEPTLFDCSIAENIIYGLDP---SS----V--TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp ECSSCCCCSEEHHHHHSSSSCT---TT----S--CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred ECCCCEeeCccHHHHHhccCCC---CC----C--CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 3677777788999999876321 11 1 1234556666666543 2334557899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (137)
||||+++|+|||||||||+||+.+...+.+.+. +.|+++.+|+.+-+..| |+|+++.+
T Consensus 1229 ARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~a--D~I~Vld~ 1290 (1321)
T 4f4c_A 1229 ARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA--DCIAVVSN 1290 (1321)
T ss_dssp HHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTC--SEEEEESS
T ss_pred HHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhC--CEEEEEEC
Confidence 999999999999999999999999888777554 66999977776644322 99998864
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=7e-19 Score=157.06 Aligned_cols=88 Identities=26% Similarity=0.309 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHhHHHHHHhhc-----cceee
Q psy317 45 CFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNN---PPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVD 115 (137)
Q Consensus 45 ~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~---P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~ 115 (137)
+++.++|+.+||.. ..++++.+|||||||||.||++|+.+ |++|||||||+|||+..+..+++.+. |.||+
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999987 46899999999999999999999996 79999999999999999998887543 77999
Q ss_pred eeccccchhhhhhc-CceEEe
Q psy317 116 YTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~~~ 135 (137)
+ .+||+.++.. |++++|
T Consensus 788 v---isHdl~~i~~aDrii~L 805 (842)
T 2vf7_A 788 A---VEHKMQVVAASDWVLDI 805 (842)
T ss_dssp E---ECCCHHHHTTCSEEEEE
T ss_pred E---EcCCHHHHHhCCEEEEE
Confidence 9 5666666633 999988
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.78 E-value=5.7e-19 Score=163.36 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=84.2
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcC-----------CCcccCccCCCCCHHHHHHHHH
Q psy317 9 SIWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG-----------LQEHKTTMTSNLSGGQKKRLSI 77 (137)
Q Consensus 9 ~~~~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lg-----------L~~~~~~~~~~LSgGqkqrv~I 77 (137)
-++...+.+-|++||+.++..- . .++++.+.++..+ .+........+||||||||++|
T Consensus 497 v~Q~~~Lf~~TI~eNI~~g~~~----~-------~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiai 565 (1321)
T 4f4c_A 497 VSQEPALFNCTIEENISLGKEG----I-------TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI 565 (1321)
T ss_dssp ECSSCCCCSEEHHHHHHTTCTT----C-------CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHH
T ss_pred cCCcceeeCCchhHHHhhhccc----c-------hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHH
Confidence 3566677789999999987310 0 1223344444443 3444556678899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh----ccceeeeeccccchhhhhhc-CceEEecC
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERK----VDTKVDYTGNRTQNLQQTIR-NEVCLISD 137 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 137 (137)
|||+.++|+|||||||||+||+.+...+.+.+ +|.|+++.+|+.+ .... |+++++.+
T Consensus 566 ARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls---~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 566 ARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS---TIRNADLIISCKN 627 (1321)
T ss_dssp HHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT---TTTTCSEEEEEET
T ss_pred HHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH---HHHhCCEEEEeeC
Confidence 99999999999999999999999877666644 4789999555554 3333 89988864
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=8.9e-19 Score=158.20 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHhHHHHHHhhc-----cceeee
Q psy317 46 FISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIALELVNNP---PIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDY 116 (137)
Q Consensus 46 ~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~ 116 (137)
++.++|+.+||.. ..++++.+|||||||||.||++|+.+| ++|||||||+|||+..+..+++.+. |.||++
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567899999987 679999999999999999999999865 9999999999999999998888543 789999
Q ss_pred eccccchhhhhhc-CceEEe
Q psy317 117 TGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~~ 135 (137)
.+||+.++.. |++++|
T Consensus 922 ---isHdl~~i~~aDrIivL 938 (993)
T 2ygr_A 922 ---IEHNLDVIKTSDWIIDL 938 (993)
T ss_dssp ---ECCCHHHHTTCSEEEEE
T ss_pred ---EcCCHHHHHhCCEEEEE
Confidence 5666666533 999988
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.4e-18 Score=156.57 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=86.4
Q ss_pred CCCCHHHHHHhhhhhhhHHh---hhhc-chhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEE
Q psy317 16 PKKTPLTRMQISNGMMVLAA---MFNQ-SQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIM 88 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~---~~~~-~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iL 88 (137)
..+||.+++.|...+..... .... -++..+++ +.|..+||... .++.+.+|||||+|||.||++|+.+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 46899999998654321110 0000 01134455 46899999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
||||||+|||+.....+++.+. |.||++.+| |+..... |+|++|
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH---dl~~i~~ADrIi~L 578 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH---DEDTMLAADYLIDI 578 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC---CHHHHHSCSEEEEE
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEec---CHHHHHhCCEEEEe
Confidence 9999999999999998887543 779999554 5544333 999987
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.77 E-value=6.7e-19 Score=143.70 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=63.4
Q ss_pred CccCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc
Q psy317 61 TTMTSNLSGGQKKRLSIALELV------NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~ 129 (137)
++++.+||||||||++||+||+ .+|++|||||||+|||+..+..+++.+. |.||++ .+||+..+..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~---itH~~~~~~~ 350 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF---ITHDREFSEA 350 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEE---EESCHHHHTT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE---EecchHHHHh
Confidence 5788999999999999999999 7999999999999999999998887544 579999 5666666443
Q ss_pred -CceEEecC
Q psy317 130 -NEVCLISD 137 (137)
Q Consensus 130 -~~~~~~~~ 137 (137)
|++++|.+
T Consensus 351 ~d~~~~l~~ 359 (365)
T 3qf7_A 351 FDRKLRITG 359 (365)
T ss_dssp CSCEEEEET
T ss_pred CCEEEEEEC
Confidence 99998864
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=1.3e-18 Score=156.35 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHhhhhhhhHHh---hhhcchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCCC--EE
Q psy317 15 DPKKTPLTRMQISNGMMVLAA---MFNQSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPP--IM 88 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~---~~~~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P~--iL 88 (137)
+..+++.+++.+...+..... ..........+..+.|..+|+... .++++.+|||||||||.|||||+.+|+ +|
T Consensus 409 ~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll 488 (916)
T 3pih_A 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY 488 (916)
T ss_dssp HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE
T ss_pred hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 345788888876433211000 000000012344567889999865 689999999999999999999999887 99
Q ss_pred EEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhc-CceEEe
Q psy317 89 FFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
||||||+|||+..+..+++.+. |.||++ .+||+..+.. |++++|
T Consensus 489 lLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv---VtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 489 VLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV---VEHDEEVIRNADHIIDI 538 (916)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE---ECCCHHHHHTCSEEEEE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE---EeCCHHHHHhCCEEEEE
Confidence 9999999999999998888654 679999 6677766655 999987
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.3e-18 Score=157.17 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCCCHHHHHHhhhhhhhHHh---hhh-cchhHHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcC--CCE
Q psy317 15 DPKKTPLTRMQISNGMMVLAA---MFN-QSQAGSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNN--PPI 87 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~---~~~-~~~~~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~--P~i 87 (137)
+..+||.+.+.|...+..... ... .-++..+++ +.|..+||... .++.+.+|||||+|||.||++|+.+ |++
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~l 544 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 446899999988644421110 000 001133454 45889999875 7999999999999999999999999 599
Q ss_pred EEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCceEEe
Q psy317 88 MFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEVCLI 135 (137)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~ 135 (137)
|||||||+|||+...+.+++.+. |.||++.+|+..-+. ..|+|++|
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~--~ADrIi~L 595 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE--HADWIVDI 595 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH--TCSEEEEE
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH--hCCEEEEe
Confidence 99999999999999998887543 789999555544332 13999988
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.9e-17 Score=147.86 Aligned_cols=89 Identities=24% Similarity=0.239 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCCcc-cCccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc-----ccee
Q psy317 43 GSCFISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV-----DTKV 114 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v 114 (137)
..+++. .|..+||... .++++.+|||||||||.||++|+.+| +++||||||+|||+...+.+++.+. |.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344554 6889999875 79999999999999999999999999 5999999999999999999888433 7799
Q ss_pred eeeccccchhhhhhc-CceEEe
Q psy317 115 DYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
++ .+||+..... |+|++|
T Consensus 435 Iv---VeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 435 FV---VEHDLDVIRRADWLVDV 453 (842)
T ss_dssp EE---ECCCHHHHTTCSEEEEE
T ss_pred EE---EcCCHHHHHhCCEEEEe
Confidence 99 5555553333 999887
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.70 E-value=5.1e-17 Score=132.51 Aligned_cols=66 Identities=24% Similarity=0.250 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceEEe
Q psy317 67 LSGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVCLI 135 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~~~ 135 (137)
||||||||++||++|+.+| ++|||||||+|||+..+..+++.+. +.+|+++ |||++.+.. |+++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i---tH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV---THLAQIAARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE---CSCHHHHTTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE---eCcHHHHhhcCeEEEE
Confidence 6999999999999999999 9999999999999999999988665 5799995 455544433 999988
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=1.8e-17 Score=123.05 Aligned_cols=71 Identities=10% Similarity=-0.085 Sum_probs=63.4
Q ss_pred ccCccCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc
Q psy317 59 HKTTMTSNLSGGQKKRLSIALE-----LVNNPPIMFFDE--PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 59 ~~~~~~~~LSgGqkqrv~IArA-----L~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~ 129 (137)
..++++.+||||||||++||+| ++.+|++||||| ||++||+..+..+.+.+. +.++++++|++||+.++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 4577888999999999999996 999999999999 999999999999888776 4468999999999888765
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.65 E-value=1.2e-16 Score=135.13 Aligned_cols=72 Identities=24% Similarity=0.233 Sum_probs=60.9
Q ss_pred ccCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc-CceE
Q psy317 62 TMTSNL-SGGQKKRLSIALELVNNP--PIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR-NEVC 133 (137)
Q Consensus 62 ~~~~~L-SgGqkqrv~IArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~-~~~~ 133 (137)
+++..| |||||||++||+||+.+| ++|||||||+|||+..+..+++.+. +.+|++ .|||++.+.. |+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~---itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV---VTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEE---ECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEE---EecCHHHHHhCCEEE
Confidence 456778 999999999999999999 9999999999999999998888654 679999 4555555444 9999
Q ss_pred Eec
Q psy317 134 LIS 136 (137)
Q Consensus 134 ~~~ 136 (137)
++.
T Consensus 469 ~~~ 471 (517)
T 4ad8_A 469 KVE 471 (517)
T ss_dssp EEE
T ss_pred EEe
Confidence 884
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.65 E-value=1.4e-16 Score=128.18 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=60.0
Q ss_pred cCccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhh
Q psy317 60 KTTMTSNLSGGQKK------RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 60 ~~~~~~~LSgGqkq------rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~ 128 (137)
.++++..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.+. +.+|+++||.. ++. ..
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~-~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK-DA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG-GG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHH-Hh
Confidence 46788999999999 6778888899999999999999999999998887543 55899977663 232 22
Q ss_pred cCceEEec
Q psy317 129 RNEVCLIS 136 (137)
Q Consensus 129 ~~~~~~~~ 136 (137)
.|+++.++
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 38888774
No 74
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.65 E-value=4.4e-16 Score=115.76 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=59.0
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVN----NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
..+++..||||||||++||++|+. +|+++||||||+|||+.++..+++.+. +.++++.||....+ ...|+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~--~~ad~ 135 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM--ANADK 135 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH--TTCSE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH--HhCCE
Confidence 345678999999999999999974 469999999999999999998888654 45777866654332 23488
Q ss_pred eEEec
Q psy317 132 VCLIS 136 (137)
Q Consensus 132 ~~~~~ 136 (137)
++.++
T Consensus 136 i~~v~ 140 (173)
T 3kta_B 136 IIGVS 140 (173)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87653
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=6.8e-16 Score=123.34 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=54.5
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeecccc
Q psy317 59 HKTTMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRT 121 (137)
Q Consensus 59 ~~~~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~ 121 (137)
..+.++..||+|||||++||+||+ .+|++|||||||++||+..+..+++.+. +.+|+++||..
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~ 282 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 356778999999999999999997 6899999999999999999998887544 56899977663
No 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.56 E-value=1.7e-14 Score=117.35 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCCcc------------cC----ccCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHh
Q psy317 45 CFISEILDTLGLQEH------------KT----TMTSNLSGGQKKRL------SIALELVNN-PPIMFFDEPTSPLHKAE 101 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~------------~~----~~~~~LSgGqkqrv------~IArAL~~~-P~iLlLDEPtsgLD~~~ 101 (137)
+.+.++++.+++... .+ .++..|||||+||+ ++|++++.+ |++|||||||+|||+..
T Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 445667777766441 11 56689999999988 567899999 99999999999999999
Q ss_pred HHHHHHhhcc----ceeeeeccccchhhhhhcCceEEec
Q psy317 102 FTPKYERKVD----TKVDYTGNRTQNLQQTIRNEVCLIS 136 (137)
Q Consensus 102 ~~~i~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~ 136 (137)
+..+++.+.. .+|+++||..+ + ....|+++++.
T Consensus 323 ~~~l~~~l~~~~~~~~vi~~th~~~-~-~~~~d~~~~l~ 359 (371)
T 3auy_A 323 RAKLAEIFRKVKSIPQMIIITHHRE-L-EDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHCCSCSEEEEEESCGG-G-GGGCSEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEChHH-H-HhhCCEEEEEE
Confidence 9999887653 48999666643 3 23338888875
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.53 E-value=3e-15 Score=109.48 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=56.0
Q ss_pred HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------hHHHHHHhh-----cc
Q psy317 53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA----------------EFTPKYERK-----VD 111 (137)
Q Consensus 53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~----------------~~~~i~~~~-----~~ 111 (137)
..|.....+. ....|+|||||++||+|++.+|++|+|||||++||+. .+..+++.+ .|
T Consensus 71 ~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g 149 (171)
T 4gp7_A 71 QLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG 149 (171)
T ss_dssp HTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred hCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence 3455444443 3456999999999999999999999999999999999 446666642 37
Q ss_pred ceeeeeccccchhhhhhc
Q psy317 112 TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 112 ~~v~~~~~~~~~~~~~~~ 129 (137)
.|+++ .+||+.++..
T Consensus 150 ~tvi~---vtH~~~~~~~ 164 (171)
T 4gp7_A 150 FRYVY---ILNSPEEVEE 164 (171)
T ss_dssp CSEEE---EECSHHHHHH
T ss_pred CcEEE---EeCCHHHhhh
Confidence 79999 6666666643
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.53 E-value=7.2e-15 Score=120.21 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=58.7
Q ss_pred CccCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHhHHHHHHhhcc--ceeeeeccccchhhhhh
Q psy317 61 TTMTS-NLSGGQKKRLSIALELV---------NNPPIMFFDEPTSPLHKAEFTPKYERKVD--TKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 61 ~~~~~-~LSgGqkqrv~IArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~~~~--~~v~~~~~~~~~~~~~~ 128 (137)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.+.. .+++++||. ++ .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~----~ 333 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP----G 333 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT----T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc----c
Confidence 45666 79999999999999999 89999999999999999999999998764 467776673 22 4
Q ss_pred cCceEEec
Q psy317 129 RNEVCLIS 136 (137)
Q Consensus 129 ~~~~~~~~ 136 (137)
.++++++.
T Consensus 334 ~~~i~~l~ 341 (359)
T 2o5v_A 334 AALTLRAQ 341 (359)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 57777664
No 79
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.49 E-value=4.8e-14 Score=116.43 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhhhcCce
Q psy317 62 TMTSNLSGGQKKRLSIALELV----NNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQTIRNEV 132 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~~~~~~ 132 (137)
+++..|||||||+++||++|+ .+|+++||||||++||+..+..+++.+. +.+++++||..+.+. ..|++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~--~~d~~ 406 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE--KSDAL 406 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT--TCSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH--hCCEE
Confidence 456679999999999999999 5899999999999999999999988664 458999777643322 24888
Q ss_pred EEec
Q psy317 133 CLIS 136 (137)
Q Consensus 133 ~~~~ 136 (137)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.5e-15 Score=126.38 Aligned_cols=111 Identities=11% Similarity=0.071 Sum_probs=79.0
Q ss_pred CCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHH--HhcCCCE----E
Q psy317 15 DPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALE--LVNNPPI----M 88 (137)
Q Consensus 15 ~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArA--L~~~P~i----L 88 (137)
+..+|+.+|+ ++..... . .. ..+++.++++.+|+.+..+ +.+||||||||++|||| |+.+|++ |
T Consensus 194 ~~~~tv~eni-~~~~~~~--~---~~--~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 194 SDILDAQLPT-WGQSLTS--G---AT--LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp CSCCCTTCTT-CSCBCBS--S---CC--SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred ccccchhhhh-ccccccc--C---cc--hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 4456888888 5432110 0 01 1123456788899988766 89999999999999999 9999999 9
Q ss_pred EEeC-CCCCCCHHhHHHHHHhhc--cceeeeeccccch-hh--hhhc--Cc-----eEEec
Q psy317 89 FFDE-PTSPLHKAEFTPKYERKV--DTKVDYTGNRTQN-LQ--QTIR--NE-----VCLIS 136 (137)
Q Consensus 89 lLDE-PtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~-~~--~~~~--~~-----~~~~~ 136 (137)
|||| ||++||+. ...+.+.+. +.++++.+|...| +. ++.. |+ |++|.
T Consensus 264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 9999 99999999 656655443 6788886655331 22 4443 87 88875
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.27 E-value=2.2e-13 Score=103.51 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNR 120 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~ 120 (137)
+++.++++. |+ |||||++|||||+.+|++|||||||+| ++..+++.+. |.+|+ +||.
T Consensus 97 ~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd 157 (208)
T 3b85_A 97 EVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGD 157 (208)
T ss_dssp THHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC
T ss_pred HHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECC
Confidence 356666765 54 999999999999999999999999999 5555555443 55776 6554
Q ss_pred cc
Q psy317 121 TQ 122 (137)
Q Consensus 121 ~~ 122 (137)
..
T Consensus 158 ~~ 159 (208)
T 3b85_A 158 IT 159 (208)
T ss_dssp --
T ss_pred HH
Confidence 43
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.21 E-value=6.6e-12 Score=106.26 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=65.2
Q ss_pred HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----hHHHHHHhh-----ccceeeeeccccc
Q psy317 53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA-----EFTPKYERK-----VDTKVDYTGNRTQ 122 (137)
Q Consensus 53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~-----~~~~i~~~~-----~~~~v~~~~~~~~ 122 (137)
.+|+....+.++..|||||+||+.+|+++..+|++||+| ||+|||.. .+..+++.+ .|.+|++++|...
T Consensus 340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~ 418 (525)
T 1tf7_A 340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ 418 (525)
T ss_dssp HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccc
Confidence 456666678889999999999999999999999999999 99999999 777766632 3789999777651
Q ss_pred ---------hhhhhhcCceEEec
Q psy317 123 ---------NLQQTIRNEVCLIS 136 (137)
Q Consensus 123 ---------~~~~~~~~~~~~~~ 136 (137)
+.-....|+|++|.
T Consensus 419 ~~~~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 419 FMGAHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp SSCCCSSCSSCCTTTCSEEEEEE
T ss_pred ccCcccccCcccceeeeEEEEEE
Confidence 11123348888764
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.18 E-value=9.6e-13 Score=109.45 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHhHHHHHHhhc---
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGG--QKKRLSIALELVN----------NPPIMFFDEPTSPLHKAEFTPKYERKV--- 110 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgG--qkqrv~IArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~~~--- 110 (137)
++.++++.+++.+.. ..+. +|+| |+||+.||+||++ +|++++|||||+|||+..+.++++.+.
T Consensus 136 ~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 456789999987653 3334 9999 9999999999999 999999999999999999987765322
Q ss_pred -------c----ceeeeeccccch
Q psy317 111 -------D----TKVDYTGNRTQN 123 (137)
Q Consensus 111 -------~----~~v~~~~~~~~~ 123 (137)
| .+|+++||...+
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTS
T ss_pred HHHHHhcCCCCCcEEEEecCcCCc
Confidence 1 246688876654
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.94 E-value=5.6e-12 Score=101.03 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=59.8
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++. |+.+|+.+..... .+... ..+.+.+.++.++ ....+.++..|||||+||+++|+|++.+|+||||||
T Consensus 131 ~~~~~-t~~e~~~~~~~~g----~~~~~--d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDe 202 (312)
T 3aez_A 131 FLYPN-AELQRRNLMHRKG----FPESY--NRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEG 202 (312)
T ss_dssp GBCCH-HHHHHTTCTTCTT----SGGGB--CHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred cCCcc-cHHHHHHHHHhcC----CChHH--HHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECC
Confidence 34555 8999986532111 11122 3456778888888 555667889999999999999999999999999999
Q ss_pred CCCCCCH
Q psy317 93 PTSPLHK 99 (137)
Q Consensus 93 PtsgLD~ 99 (137)
|+..+|+
T Consensus 203 p~~~~d~ 209 (312)
T 3aez_A 203 LNVLQTG 209 (312)
T ss_dssp TTTTCCC
T ss_pred ccccCCc
Confidence 9999975
No 85
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.94 E-value=9.3e-10 Score=99.21 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH----Hhh---ccceeeeeccc
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY----ERK---VDTKVDYTGNR 120 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~----~~~---~~~~v~~~~~~ 120 (137)
+++..+|+.+...+..+++|+|++|++.|+++ +++|+++||||||+|+|+.....+. +.+ .|.+++++||.
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 35566677777777889999999999999999 8999999999999999998877665 332 37899997776
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.89 E-value=1.2e-10 Score=92.90 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317 50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRT 121 (137)
Q Consensus 50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~ 121 (137)
+++.+|+.+..++++.+|| |||+.||||++.+|+ +|+|| ||+|||+..+..-+....+.++++.||.+
T Consensus 188 lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD 257 (302)
T ss_dssp EECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCS
T ss_pred HHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4667788777778889999 999999999999999 99999 99999999876555555688999977643
No 87
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.87 E-value=3.7e-09 Score=82.07 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHhH---HHHHHhh------cccee
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS--PLHKAEF---TPKYERK------VDTKV 114 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts--gLD~~~~---~~i~~~~------~~~~v 114 (137)
...++++.+++.+..++++..||+|++|++ ++++.+|++||+||||+ ++|.... .++++.+ .|.+|
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 455678888888888889999999998764 68889999999999999 9998543 4444432 27799
Q ss_pred eeeccccchh
Q psy317 115 DYTGNRTQNL 124 (137)
Q Consensus 115 ~~~~~~~~~~ 124 (137)
++++|.....
T Consensus 175 i~i~H~~~~~ 184 (279)
T 1nlf_A 175 VFLHHASKGA 184 (279)
T ss_dssp EEEEEC----
T ss_pred EEEecCCCcc
Confidence 9988776554
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.84 E-value=4.1e-09 Score=95.21 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=47.3
Q ss_pred CccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHhHHHH----HHhh---ccceeeeeccccchhhh
Q psy317 61 TTMTSNLSGGQKKRLSIALEL--VNNPPIMFFDEPTSPLHKAEFTPK----YERK---VDTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEPtsgLD~~~~~~i----~~~~---~~~~v~~~~~~~~~~~~ 126 (137)
+.....+|+|++++..+|+++ +++|+++||||||+|+|+.....+ ++.+ .|.+++++||. |++..
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~-~el~~ 789 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF-HELTA 789 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC-GGGGG
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc-HHHHH
Confidence 344567888888888888888 999999999999999999877665 3333 27899998887 55553
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=1.2e-11 Score=97.20 Aligned_cols=94 Identities=9% Similarity=0.034 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDE 92 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDE 92 (137)
.+++.+||.+|+.++..... .. ..+.+.+.+. ....+.++.+||||||||+++|||++. ++++||
T Consensus 57 ~~~~~ltv~d~~~~g~~~~~------~~--~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---llllde 121 (270)
T 3sop_A 57 GVKMKLTVIDTPGFGDQINN------EN--CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISP 121 (270)
T ss_dssp --CCEEEEECCCC--CCSBC------TT--CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECC
T ss_pred CCcCCceEEechhhhhhccc------HH--HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEec
Confidence 45667788888876542211 01 1122333333 345667788999999999999999886 999999
Q ss_pred CCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317 93 PTSPLHKAEFTPKYERKVDTKVDYTGNRT 121 (137)
Q Consensus 93 PtsgLD~~~~~~i~~~~~~~~v~~~~~~~ 121 (137)
|++|||+...+.+.......+|++..+..
T Consensus 122 p~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 122 TGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp CSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred CCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 99999999865444433346777655443
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.76 E-value=2.5e-09 Score=87.40 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=57.0
Q ss_pred HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317 50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR 120 (137)
Q Consensus 50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~ 120 (137)
+++.+|+.+..++++.+|| |||+.||||++.+|+ +|+|| ||+|+|+..+..-+....+.++++.||.
T Consensus 245 lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 245 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp EEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecC
Confidence 4567788777778888999 999999999999999 99999 9999999987665555568899997764
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.72 E-value=4e-11 Score=89.48 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=60.8
Q ss_pred HHHHHHH------HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----CHHhHHHHHHhh----
Q psy317 44 SCFISEI------LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL----HKAEFTPKYERK---- 109 (137)
Q Consensus 44 ~~~~~~~------L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgL----D~~~~~~i~~~~---- 109 (137)
.+++.+. ++.+|+....++++..|| +|+.+|++++|||||+|+ |+..+..+++.+
T Consensus 106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 106 RAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp HHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 3455555 666777777788889998 999999999999999998 676777665532
Q ss_pred --ccceeeeeccccchhhhhhc--CceEEec
Q psy317 110 --VDTKVDYTGNRTQNLQQTIR--NEVCLIS 136 (137)
Q Consensus 110 --~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 136 (137)
.+.+|++ .|||+.+|.. |+++++.
T Consensus 175 ~~~g~tvi~---vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 175 AQGDFDKVV---VNRRLESACAELVSLLVGT 202 (207)
T ss_dssp GGGGSSEEE---ECSSHHHHHHHHHHHHC--
T ss_pred hhccCcEEE---ECCCHHHHHHHHHHHHHhc
Confidence 2679999 7789999987 8887763
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.71 E-value=4.3e-08 Score=76.40 Aligned_cols=59 Identities=3% Similarity=-0.045 Sum_probs=41.4
Q ss_pred ccCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HhHHHHHHhh------ccceeeeecccc
Q psy317 62 TMTSNLSGGQ-KKRLSIALELVNNPPIMFFDEPTS---P---LHK-AEFTPKYERK------VDTKVDYTGNRT 121 (137)
Q Consensus 62 ~~~~~LSgGq-kqrv~IArAL~~~P~iLlLDEPts---g---LD~-~~~~~i~~~~------~~~~v~~~~~~~ 121 (137)
..+..+|.++ +|++. |+++..+|++||+||||+ + +|. .....+++.+ .+.+|+++||..
T Consensus 125 ~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 125 DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 3457789998 66666 999999999999999999 5 455 4445555533 277999977774
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.68 E-value=1.7e-08 Score=91.91 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=49.9
Q ss_pred HcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH----HHHHhhc---cceeeeeccccchhh
Q psy317 53 TLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT----PKYERKV---DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 53 ~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~----~i~~~~~---~~~v~~~~~~~~~~~ 125 (137)
.+|+.+...+..+++|+++++ +++|++++++|+++|||||++|+|+.... .+++.+. |.+++++| |++.
T Consensus 838 rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~T---H~~e 913 (1022)
T 2o8b_B 838 RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFST---HYHS 913 (1022)
T ss_dssp ECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEEC---CCHH
T ss_pred HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEe---CCHH
Confidence 345544444556778888776 99999999999999999999999988743 3344432 67999955 5554
Q ss_pred hhhc--CceEE
Q psy317 126 QTIR--NEVCL 134 (137)
Q Consensus 126 ~~~~--~~~~~ 134 (137)
.+.. +++++
T Consensus 914 l~~~~~d~~~v 924 (1022)
T 2o8b_B 914 LVEDYSQNVAV 924 (1022)
T ss_dssp HHHHTSSCSSE
T ss_pred HHHHhCCccee
Confidence 4433 44433
No 94
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.53 E-value=1.6e-09 Score=86.79 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=48.4
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccccchhhh
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~~~~~~ 126 (137)
+.+.++.+ +.+..+ +..|||||||| ||||+.+|+||| |++||+.+...+.. .+|++..
T Consensus 184 ~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------------ltH~~~~ 241 (305)
T 2v9p_A 184 CWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------------LHSRVQT 241 (305)
T ss_dssp HHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG------------GTTTEEE
T ss_pred HHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH------------HhCCHHH
Confidence 33455553 444344 78999999999 999999999999 99999999876642 1555544
Q ss_pred hhc-CceEEec
Q psy317 127 TIR-NEVCLIS 136 (137)
Q Consensus 127 ~~~-~~~~~~~ 136 (137)
... |++ ++.
T Consensus 242 ~~~aD~i-vl~ 251 (305)
T 2v9p_A 242 FRFEQPC-TDE 251 (305)
T ss_dssp EECCCCC-CCC
T ss_pred HHhCCEE-EEe
Confidence 333 777 664
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.52 E-value=6.8e-08 Score=85.66 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=47.8
Q ss_pred cCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHhH-HHHHHhh--ccceeeeecccc
Q psy317 63 MTSNLSGGQKKRLSIALEL--VNNPPIMFFDEP---TSPLHKAEF-TPKYERK--VDTKVDYTGNRT 121 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL--~~~P~iLlLDEP---tsgLD~~~~-~~i~~~~--~~~~v~~~~~~~ 121 (137)
....+|+|+++++.+++++ +++|+++||||| |++||..+. ..+++.+ .|.+++++||..
T Consensus 632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~ 698 (765)
T 1ewq_A 632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 698 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3456899999999999999 999999999999 999998875 3566654 478999977663
No 96
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.50 E-value=8.1e-08 Score=77.16 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cc-eeeeeccccc
Q psy317 69 GGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DT-KVDYTGNRTQ 122 (137)
Q Consensus 69 gGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~-~v~~~~~~~~ 122 (137)
|||+||++||+||..+|++||+||||+. . ...+++.+. |. ++++++|...
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~---e-~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS---E-AYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST---H-HHHHHHHHHTTCCCEEEEEECSS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH---H-HHHHHHHHhcCCCEEEEEEcccH
Confidence 8999999999999999999999999982 2 233444443 43 7899777665
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.48 E-value=3.2e-07 Score=67.62 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHhHHHHHHhhc------cceeeeecccc--------chhhhh
Q psy317 66 NLSGGQKKRLSIALELVNNPP--IMFFDEPTSPL--HKAEFTPKYERKV------DTKVDYTGNRT--------QNLQQT 127 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgL--D~~~~~~i~~~~~------~~~v~~~~~~~--------~~~~~~ 127 (137)
..|.++.++...+.+...+|+ +|++||||+++ |+..+..+++.+. +.+|++++|.. ..+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~- 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEH- 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHH-
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhe-
Confidence 458999988888888888999 99999999888 9987777766432 67999977665 11222
Q ss_pred hcCceEEec
Q psy317 128 IRNEVCLIS 136 (137)
Q Consensus 128 ~~~~~~~~~ 136 (137)
..|+|++|.
T Consensus 182 ~~d~vi~l~ 190 (235)
T 2w0m_A 182 VADGIIRFR 190 (235)
T ss_dssp HCSEEEEEE
T ss_pred eeeEEEEEE
Confidence 228888764
No 98
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.46 E-value=1.4e-07 Score=69.03 Aligned_cols=67 Identities=18% Similarity=0.019 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCcc-cCccCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317 45 CFISEILDTLGLQEH-KTTMTSNLSGGQKKR-LSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVD 111 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~-~~~~~~~LSgGqkqr-v~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~ 111 (137)
..+.+++...++... ...+...+|+||+|+ +..+++++.+|+++++|||||++|......+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 345567777787654 366788899999999 8999999999999999999999999999999887653
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.42 E-value=1.9e-08 Score=76.74 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy317 12 DSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 12 ~~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD 91 (137)
+.+++.+|+.+++.+......... +... ..+.+.+.|+.+ ....+.++..||+||+||+.+ ++++.+|+++|+|
T Consensus 67 d~~~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD 140 (245)
T 2jeo_A 67 DRFYKVLTAEQKAKALKGQYNFDH-PDAF--DNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE 140 (245)
T ss_dssp GGGBCCCCHHHHHHHHTTCCCTTS-GGGB--CHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE
T ss_pred CcCccccCHhHhhhhhccCCCCCC-cccc--cHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEe
Confidence 346677899998875432111000 0011 223445555543 345677889999999999988 6889999999999
Q ss_pred CCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317 92 EPTSPLHKAEFTPKYERKVDTKVDYTGNR 120 (137)
Q Consensus 92 EPtsgLD~~~~~~i~~~~~~~~v~~~~~~ 120 (137)
||....+.. + ....+.+|++++|.
T Consensus 141 g~~~~~~~~----l-~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 141 GILVFYSQE----I-RDMFHLRLFVDTDS 164 (245)
T ss_dssp CTTTTTSHH----H-HTTCSEEEEEECCH
T ss_pred CccccccHH----H-HHhcCeEEEEECCH
Confidence 998887764 2 23358899996654
No 100
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.38 E-value=1.2e-09 Score=82.45 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----------
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSI-----ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---------- 110 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~I-----ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---------- 110 (137)
.++++++...+. ..+ .++||||+||++| +++++..|++++|||||+++|..+...+.+++.
T Consensus 106 ~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h 181 (218)
T 1z6g_A 106 EYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEAN 181 (218)
T ss_dssp HHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 456666654432 122 6789999999999 899999999999999999999987777766542
Q ss_pred --cceeeeeccccchhhhhhc
Q psy317 111 --DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 111 --~~~v~~~~~~~~~~~~~~~ 129 (137)
....++ .+||+++|..
T Consensus 182 ~~~~d~ii---v~~~~~ea~~ 199 (218)
T 1z6g_A 182 LLNFNLSI---INDDLTLTYQ 199 (218)
T ss_dssp TSCCSEEE---ECSSHHHHHH
T ss_pred ccCCCEEE---ECCCHHHHHH
Confidence 234445 4567777665
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.35 E-value=3.8e-07 Score=68.23 Aligned_cols=69 Identities=9% Similarity=-0.035 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHhHHHHHHhh-----ccceeeeeccccchhh--------hhhc
Q psy317 68 SGGQKKRLSIALELVNNPPIMFFDEPTSPLH-----KAEFTPKYERK-----VDTKVDYTGNRTQNLQ--------QTIR 129 (137)
Q Consensus 68 SgGqkqrv~IArAL~~~P~iLlLDEPtsgLD-----~~~~~~i~~~~-----~~~~v~~~~~~~~~~~--------~~~~ 129 (137)
+.++......+..-..+|+++++||||+++| +..+..+.+.+ .|.||+++||...... +...
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 3445444444445568999999999999997 55554454422 3789999777766652 3344
Q ss_pred -CceEEec
Q psy317 130 -NEVCLIS 136 (137)
Q Consensus 130 -~~~~~~~ 136 (137)
|+|++|.
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 8888874
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.32 E-value=9.9e-07 Score=64.82 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCc--cc-CccCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHhH--------HHHHH----
Q psy317 46 FISEILDTLGLQE--HK-TTMTSNLSGGQ--KKRLSIALELVNN-PPIMFFDEPTSPLHKAEF--------TPKYE---- 107 (137)
Q Consensus 46 ~~~~~L~~lgL~~--~~-~~~~~~LSgGq--kqrv~IArAL~~~-P~iLlLDEPtsgLD~~~~--------~~i~~---- 107 (137)
++.+.++.+++.. .. +-.+...|+++ ++++..+++++.+ |+++|+||||+++|+... ..+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 140 (220)
T 2cvh_A 61 RLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLW 140 (220)
T ss_dssp HHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHH
Confidence 3444555555521 11 11344556664 5678888899986 999999999999997431 22322
Q ss_pred hh--ccceeeeeccccchh
Q psy317 108 RK--VDTKVDYTGNRTQNL 124 (137)
Q Consensus 108 ~~--~~~~v~~~~~~~~~~ 124 (137)
.. .+.+|++++|...+.
T Consensus 141 l~~~~~~~vi~~~h~~~~~ 159 (220)
T 2cvh_A 141 IARKHNIPVIVINQVHFDS 159 (220)
T ss_dssp HHHHHTCCEEEEECSSSSC
T ss_pred HHHHcCCEEEEEeeEEEcC
Confidence 22 277999988876643
No 103
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.23 E-value=7.2e-08 Score=81.48 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHhHHHHHHhhc-----cceeeeeccccchh--------hhhhcCceE
Q psy317 73 KRLSIALELV-NNPPIMFFDEPTS-----PLHKAEFTPKYERKV-----DTKVDYTGNRTQNL--------QQTIRNEVC 133 (137)
Q Consensus 73 qrv~IArAL~-~~P~iLlLDEPts-----gLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~--------~~~~~~~~~ 133 (137)
+.-.+..+|. .+|+++++||||+ ++|+..+..+++.+. |.||+++||....+ .....|+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 3445566664 6899999999998 468888887777433 78999966665553 223359999
Q ss_pred Eec
Q psy317 134 LIS 136 (137)
Q Consensus 134 ~~~ 136 (137)
+|.
T Consensus 206 ~L~ 208 (525)
T 1tf7_A 206 ILR 208 (525)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 104
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.21 E-value=5.9e-07 Score=69.91 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccc
Q psy317 73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQ 122 (137)
Q Consensus 73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~ 122 (137)
-+++||+||+.+|++|++|||| |+.+...+++... |.+|++++|...
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcch
Confidence 3899999999999999999999 9988877666443 779999777644
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=7.5e-08 Score=71.76 Aligned_cols=56 Identities=7% Similarity=-0.005 Sum_probs=44.1
Q ss_pred CccCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHhHHHHHHhhccc-eeee
Q psy317 61 TTMTSNLSGGQKKRL-SIAL---ELVNNPPIMFFDE--PTSPLHKAEFTPKYERKVDT-KVDY 116 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv-~IAr---AL~~~P~iLlLDE--PtsgLD~~~~~~i~~~~~~~-~v~~ 116 (137)
.++...+|+|||+++ ++++ |++.+|++||+|| ||..+|......+.+.+... ++++
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~il 140 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIIL 140 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEE
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEE
Confidence 445567999999888 4444 6899999999999 89999998888877776644 6665
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.07 E-value=3.8e-06 Score=74.81 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=39.7
Q ss_pred CCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHH----HHhh---ccceeeeecccc
Q psy317 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPK----YERK---VDTKVDYTGNRT 121 (137)
Q Consensus 55 gL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i----~~~~---~~~~v~~~~~~~ 121 (137)
+..+......+.+|+++++. ..+...+++|+++|||||++|+|+.....+ ++.+ .|.+++++||..
T Consensus 658 ~~~d~l~~~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 658 GAADDLASGRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp C-----------CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred CHHHHHHhhhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 33333334456678777654 444456899999999999999888765443 3333 367999977764
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.03 E-value=3.3e-06 Score=68.17 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHh------------HHHHHHhh------ccceeeeeccccc
Q psy317 68 SGGQKKRLSIALELV-------NNPPIMFFDEPTSPLHKAE------------FTPKYERK------VDTKVDYTGNRTQ 122 (137)
Q Consensus 68 SgGqkqrv~IArAL~-------~~P~iLlLDEPtsgLD~~~------------~~~i~~~~------~~~~v~~~~~~~~ 122 (137)
|.+++|++.++++++ .+|++||+||||+++|+.. ..+++..+ .+.+|++++|.+.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999852 23443322 2779999888776
Q ss_pred hhh
Q psy317 123 NLQ 125 (137)
Q Consensus 123 ~~~ 125 (137)
+..
T Consensus 288 ~~~ 290 (349)
T 1pzn_A 288 RPD 290 (349)
T ss_dssp ---
T ss_pred ccc
Confidence 554
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.03 E-value=3.3e-09 Score=78.50 Aligned_cols=96 Identities=5% Similarity=-0.063 Sum_probs=70.3
Q ss_pred CCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCCcccCccCCCCCHHHH----HHHHHHHHHhcCCCEEEEe
Q psy317 16 PKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQK----KRLSIALELVNNPPIMFFD 91 (137)
Q Consensus 16 ~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSgGqk----qrv~IArAL~~~P~iLlLD 91 (137)
..+|+.++..+... . .. .. ..+++.+.++.+++.+..+.++..+|+|++ ||+.++++++.+|.++++|
T Consensus 47 ~~~~~~~~~~~~~~--~-~~---~~--~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~d 118 (211)
T 3asz_A 47 GHLPLEERLRVNYD--H-PD---AF--DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYP 118 (211)
T ss_dssp TTSCHHHHHHSCTT--S-GG---GB--CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSS
T ss_pred ccccHHHhcCCCCC--C-hh---hh--hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccC
Confidence 45788887654321 1 11 11 235677788888888878888999999974 6889999999999999999
Q ss_pred CCCCC-------CCHHhHHHHHHhh------ccceeeeecc
Q psy317 92 EPTSP-------LHKAEFTPKYERK------VDTKVDYTGN 119 (137)
Q Consensus 92 EPtsg-------LD~~~~~~i~~~~------~~~~v~~~~~ 119 (137)
|||++ ||+.....+.+.+ .|.++...+|
T Consensus 119 e~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 119 KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp HHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999 9988777666643 2667776443
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.02 E-value=7.1e-08 Score=76.39 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=43.2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHhHHHHHHhhc---cceeeeeccc
Q psy317 59 HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS-PLHKAEFTPKYERKV---DTKVDYTGNR 120 (137)
Q Consensus 59 ~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~~~---~~~v~~~~~~ 120 (137)
..++++.++|||+|||+.+|||++ ++++||||+ |||+... .++..+. +..+.+++|.
T Consensus 106 ~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGG
T ss_pred HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCC
Confidence 345788999999999999999886 999999998 5999986 4444443 3455574443
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.83 E-value=2.3e-05 Score=63.68 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchh
Q psy317 76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNL 124 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~ 124 (137)
+||+||.++|++|++|||+ |......+++.. .|.+|++|+|.....
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 8999999999999999999 777766655543 488999977776554
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.80 E-value=1.4e-05 Score=58.94 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCcc--cC--ccCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHHh------------
Q psy317 46 FISEILDTLGLQEH--KT--TMTSNLSGGQK-KRLSIALELVN-------NPPIMFFDEPTSPLHKAE------------ 101 (137)
Q Consensus 46 ~~~~~L~~lgL~~~--~~--~~~~~LSgGqk-qrv~IArAL~~-------~P~iLlLDEPtsgLD~~~------------ 101 (137)
++..+.+.+++... .+ ......+.+++ +.+..+.+++. +|+++++||||+++|+..
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~ 154 (231)
T 4a74_A 75 RIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 154 (231)
T ss_dssp HHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHH
Confidence 45556666666421 11 11234455544 33666666665 999999999999999831
Q ss_pred HHHHHHhh------ccceeeeeccccch-hhhhhc--CceEEec
Q psy317 102 FTPKYERK------VDTKVDYTGNRTQN-LQQTIR--NEVCLIS 136 (137)
Q Consensus 102 ~~~i~~~~------~~~~v~~~~~~~~~-~~~~~~--~~~~~~~ 136 (137)
...+++.+ .|.+|++++|...+ -..... |+++++.
T Consensus 155 ~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 155 LAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 11333322 27899997775554 111211 6666654
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.75 E-value=5.3e-07 Score=71.31 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCC------c--ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHh
Q psy317 45 CFISEILDTLGLQ------E--HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101 (137)
Q Consensus 45 ~~~~~~L~~lgL~------~--~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~ 101 (137)
....+.++.+.-. . ....+...+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 4555666666432 1 2345568899999999998733333999999999999999853
No 113
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.67 E-value=4.4e-06 Score=67.62 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=46.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-------cc-----eeeeeccccchhhhhhc
Q psy317 62 TMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-------DT-----KVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-------~~-----~v~~~~~~~~~~~~~~~ 129 (137)
+.+..||+|| |++++| +.+|++ |+|+|+..+..+.+.+. |. ||++ .+||+.....
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~---~thdl~~~i~ 233 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLL---ESDNVNDPIG 233 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEEC---CSSCCCCHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEE---eCCCCCChhh
Confidence 4678999999 899999 688887 99999999998777443 32 5556 6677775544
Q ss_pred CceEEec
Q psy317 130 NEVCLIS 136 (137)
Q Consensus 130 ~~~~~~~ 136 (137)
|+++++.
T Consensus 234 d~v~~i~ 240 (347)
T 2obl_A 234 DEVRSIL 240 (347)
T ss_dssp HHHHHHC
T ss_pred hheEEee
Confidence 6655543
No 114
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=7e-05 Score=58.90 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=40.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCceE
Q psy317 81 LVNNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNEVC 133 (137)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~~~ 133 (137)
+..+|+++|+|||++ ||+..+..+++.+. +.+++++||..+.+-.+++.|..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence 788999999999999 99999888888665 45788988988887777766543
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.49 E-value=2.4e-05 Score=62.21 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317 67 LSGGQKKRLSIALELVNNPP--IMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR 120 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~--iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~ 120 (137)
++..++||+.||||++.+|+ ++.|| |+++.+......-+....+.++++.||.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 45556899999999999999 77788 7777776655444444558899995554
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=0.00026 Score=50.74 Aligned_cols=44 Identities=18% Similarity=0.036 Sum_probs=34.9
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHhHHHHHHhh-----ccceeeeeccccch
Q psy317 80 ELVNNPPIMFFDEPTS-PLHKAEFTPKYERK-----VDTKVDYTGNRTQN 123 (137)
Q Consensus 80 AL~~~P~iLlLDEPts-gLD~~~~~~i~~~~-----~~~~v~~~~~~~~~ 123 (137)
..+.+|++|+||||++ ++|+..+..+++.+ .+.+++++||...+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 3456999999999985 99999988776643 47799999977654
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.41 E-value=1.5e-05 Score=66.08 Aligned_cols=55 Identities=5% Similarity=0.026 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHhHHHHHHhhccceeeeeccc
Q psy317 66 NLSGGQKKRLSIALELVNNPP---IMFFDEPT-SPLHKAEFTPKYERKVDTKVDYTGNR 120 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~---iLlLDEPt-sgLD~~~~~~i~~~~~~~~v~~~~~~ 120 (137)
.++.+++||+.||||++.+|+ +|++|||| +|||+.....+-....+.+|++.+|.
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK 176 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAK 176 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEc
Confidence 345567789999999999999 99999999 69999886444333336677766543
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.39 E-value=5.8e-06 Score=62.68 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=38.2
Q ss_pred cccCccCCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHhHHHHHHhhc
Q psy317 58 EHKTTMTSNLSGGQKKRLSIALEL-VNNPPIMFFD----EPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 58 ~~~~~~~~~LSgGqkqrv~IArAL-~~~P~iLlLD----EPtsgLD~~~~~~i~~~~~ 110 (137)
...++++..||| |+ +|+ +.+|++++|| |||+++|+.+...+.+.+.
T Consensus 144 r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~ 194 (246)
T 2bbw_A 144 RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLR 194 (246)
T ss_dssp HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHH
T ss_pred HHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHH
Confidence 345778899999 55 788 9999999999 9999999998887776543
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.39 E-value=3.6e-05 Score=64.12 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc---------cc-----eeeeeccccchhhhhhc
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV---------DT-----KVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~---------~~-----~v~~~~~~~~~~~~~~~ 129 (137)
+..||+|| ||++|| +.+|++ |+|||+..+..+.+.+. |. ||++ .+||+.....
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv---~tHdl~~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT---EGDDQQDPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEEC---SSSCSCCHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEE---eCCCccchhh
Confidence 67899999 999999 899988 99999999988777442 21 5666 6677753333
Q ss_pred CceEEe
Q psy317 130 NEVCLI 135 (137)
Q Consensus 130 ~~~~~~ 135 (137)
|++++|
T Consensus 323 d~v~~l 328 (438)
T 2dpy_A 323 DSARAI 328 (438)
T ss_dssp HHHHHH
T ss_pred ceEEEE
Confidence 444443
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.0016 Score=48.03 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCcc--cC--ccCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------h-----HHHHH
Q psy317 46 FISEILDTLGLQEH--KT--TMTSNLSGGQKKR-LSIALELV--NNPPIMFFDEPTSPLHKA-------E-----FTPKY 106 (137)
Q Consensus 46 ~~~~~L~~lgL~~~--~~--~~~~~LSgGqkqr-v~IArAL~--~~P~iLlLDEPtsgLD~~-------~-----~~~i~ 106 (137)
+..++++.+|+... .+ ..+...+..+... +.-+..++ .+|+++++|||++.+|+. . ...++
T Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~ 153 (243)
T 1n0w_A 74 RLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFL 153 (243)
T ss_dssp HHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHH
Confidence 34455666665420 01 1123456555433 23233333 589999999999999974 2 22333
Q ss_pred Hhh------ccceeeeeccccchhhh
Q psy317 107 ERK------VDTKVDYTGNRTQNLQQ 126 (137)
Q Consensus 107 ~~~------~~~~v~~~~~~~~~~~~ 126 (137)
..+ .+.+|++++|...+...
T Consensus 154 ~~l~~~~~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 154 RMLLRLADEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp HHHHHHHHHHCCEEEEEC--------
T ss_pred HHHHHHHHHcCCEEEEEeeeeecCCC
Confidence 322 27899998887766554
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.04 E-value=0.00092 Score=54.22 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeecccc
Q psy317 74 RLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRT 121 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~ 121 (137)
+..|+++|..+|++|++|||+ |+.....+++... |.+|+.|+|..
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTN 244 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEECCCCC
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEEECcc
Confidence 568999999999999999999 7777666555443 67888866764
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.00 E-value=4.7e-05 Score=60.38 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=49.3
Q ss_pred HHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh-ccceeeeeccccchhhhhhc
Q psy317 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK-VDTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 51 L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~~ 129 (137)
+..+++.+..++.. ++|+||+||+..+++++.+|+++ ||| ......+..+ .+.+|+++||..-|+....+
T Consensus 127 l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 127 IALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARINARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp EEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred EEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence 34445555444443 79999999999999999999988 999 3333333333 47799998887777766544
No 123
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.99 E-value=0.00016 Score=59.86 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=52.0
Q ss_pred HHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH---HHHHhhc--cceeeeec-cccch
Q psy317 50 ILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT---PKYERKV--DTKVDYTG-NRTQN 123 (137)
Q Consensus 50 ~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~---~i~~~~~--~~~v~~~~-~~~~~ 123 (137)
++..+++. +.++.+||+|++|++.+|++|+..|.+|++ +.+|+.... .+.+.+. +.+++++| ++.++
T Consensus 239 lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 239 LLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred hhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 34444454 567788999999999999999999999999 999987652 2222222 45777655 77777
Q ss_pred hhhhh
Q psy317 124 LQQTI 128 (137)
Q Consensus 124 ~~~~~ 128 (137)
+.+..
T Consensus 312 i~eL~ 316 (416)
T 1udx_A 312 LPALK 316 (416)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.75 E-value=0.0014 Score=46.31 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=29.2
Q ss_pred HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cce-eeeeccc
Q psy317 80 ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTK-VDYTGNR 120 (137)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~-v~~~~~~ 120 (137)
+++.+|++|++|||++ ++...++.+++.+. |.+ ++++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4578999999999998 65555666666432 566 8888874
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.29 E-value=0.0012 Score=52.90 Aligned_cols=58 Identities=3% Similarity=-0.244 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHhHHHHHHhh----c--cceeeeeccc
Q psy317 63 MTSNLSGGQKKRLSIALELV-NNPPIMFFDE---PT------SPLHKAEFTPKYERK----V--DTKVDYTGNR 120 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~-~~P~iLlLDE---Pt------sgLD~~~~~~i~~~~----~--~~~v~~~~~~ 120 (137)
.+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+..+.+.+ . +.+|++.+|-
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 34456677777887777764 6899999999 65 588988888877765 3 6788876654
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.15 E-value=6.1e-05 Score=55.10 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEE
Q psy317 66 NLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~iL 88 (137)
.|||||+||++||||+..+|++.
T Consensus 103 glSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGC
T ss_pred CcCCCCCcEEEEEecccCCCccC
Confidence 49999999999999999999873
No 127
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.92 E-value=0.0051 Score=52.90 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=24.3
Q ss_pred HHhcCCCEEEEeCC------CCCCCHHhHHHHHHhhc
Q psy317 80 ELVNNPPIMFFDEP------TSPLHKAEFTPKYERKV 110 (137)
Q Consensus 80 AL~~~P~iLlLDEP------tsgLD~~~~~~i~~~~~ 110 (137)
+....|+++|+||| |+|||+..+.++.+.+.
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 33457999999999 99999999887777543
No 128
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.009 Score=47.31 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRL---SIALELVNNPPIMFFDEPTS 95 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv---~IArAL~~~P~iLlLDEPts 95 (137)
...+++.+|+.- +...|+|+.+++ ++++++..+|+++|+|||..
T Consensus 151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 445677777753 345689999999 89999999999999999974
No 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.68 E-value=0.0021 Score=45.97 Aligned_cols=42 Identities=5% Similarity=-0.179 Sum_probs=34.9
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
+.++..+|+|++|++.++|++.++|+++ +|+.....+++...
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 4456789999999999999999999976 58888877777554
No 130
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.63 E-value=0.027 Score=47.31 Aligned_cols=61 Identities=21% Similarity=0.160 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHhHH---HHHHhh------ccceeeeeccccchhhhhhc
Q psy317 69 GGQKKRLSIALELVNNPPIMFFDEPT----------SPLHKAEFT---PKYERK------VDTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 69 gGqkqrv~IArAL~~~P~iLlLDEPt----------sgLD~~~~~---~i~~~~------~~~~v~~~~~~~~~~~~~~~ 129 (137)
+++++|-.+++|....|.+|++||+- +|.|..... +++..+ .+..|+.+||..+.+..+..
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 67888899999999999999999993 355554333 333322 23466678899888887753
No 131
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.47 E-value=0.0026 Score=50.88 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHH---hc--CCCEEEEeCCCC
Q psy317 65 SNLSGGQKKRLSIALEL---VN--NPPIMFFDEPTS 95 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL---~~--~P~iLlLDEPts 95 (137)
..+|+|++||..|+++| .. +++++++|||+.
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~ 330 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSY 330 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSSH
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCH
Confidence 35899999999999999 76 899999999973
No 132
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.35 E-value=0.028 Score=47.42 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=41.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeec
Q psy317 62 TMTSNLSGGQKKRLSIALELV--N---------------NPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTG 118 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~--~---------------~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~ 118 (137)
+..+.+||||+|..-+|++-+ + .-.++++||. +-+|.......++..+ |.-+++++
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiat 449 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAA 449 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 346889999999765555432 2 2368999999 9999999998888766 55555544
No 133
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.33 E-value=0.083 Score=43.44 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH--------hHHHHHHhhc-----
Q psy317 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV--NNPPIMFFDEPTSPLHKA--------EFTPKYERKV----- 110 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~--~~P~iLlLDEPtsgLD~~--------~~~~i~~~~~----- 110 (137)
++.+.+..++.....-.....+|.++.+ ..++.++ .+|+++++|+++...+.. ....+.+.++
T Consensus 275 ~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke 352 (454)
T 2r6a_A 275 KLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE 352 (454)
T ss_dssp HHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444333332235679999887 4566666 789999999999977432 2233333332
Q ss_pred -cceeeeecccc
Q psy317 111 -DTKVDYTGNRT 121 (137)
Q Consensus 111 -~~~v~~~~~~~ 121 (137)
+.+|++++|.+
T Consensus 353 ~~i~vi~~sql~ 364 (454)
T 2r6a_A 353 LEVPVIALSQLS 364 (454)
T ss_dssp HTCCEEEEECCC
T ss_pred hCCeEEEEecCC
Confidence 67999988844
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.26 E-value=0.047 Score=40.00 Aligned_cols=41 Identities=10% Similarity=-0.018 Sum_probs=28.1
Q ss_pred cCCCEEEEeCCCCCC--CHHhHHHHHHh------hccceeeeeccccch
Q psy317 83 NNPPIMFFDEPTSPL--HKAEFTPKYER------KVDTKVDYTGNRTQN 123 (137)
Q Consensus 83 ~~P~iLlLDEPtsgL--D~~~~~~i~~~------~~~~~v~~~~~~~~~ 123 (137)
.+|+++++|+|++.+ |+.....++.. ..+.+|++++|.+.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 589999999999988 55433333332 236799998887765
No 135
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.25 E-value=0.026 Score=46.33 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCcc--c-CccCCCCCHHHHH--HHHHHHHH--hcCCCEEEEeCCCCCCCHHhH------------HHH
Q psy317 45 CFISEILDTLGLQEH--K-TTMTSNLSGGQKK--RLSIALEL--VNNPPIMFFDEPTSPLHKAEF------------TPK 105 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~--~-~~~~~~LSgGqkq--rv~IArAL--~~~P~iLlLDEPtsgLD~~~~------------~~i 105 (137)
.++.++.+.+|+... . +-.+.....++.+ .+.-+..+ ..+|+++++|||++.+++... ..+
T Consensus 227 ~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 227 VRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp HHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 455567777887421 1 1122222333333 33333333 257999999999999986422 233
Q ss_pred HHhh------ccceeeeeccccc
Q psy317 106 YERK------VDTKVDYTGNRTQ 122 (137)
Q Consensus 106 ~~~~------~~~~v~~~~~~~~ 122 (137)
+..+ .+.+|++++|...
T Consensus 307 l~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 307 MRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHcCCEEEEEEeecc
Confidence 3322 2779999888743
No 136
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.74 E-value=0.0097 Score=52.58 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=46.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHhHHHHHHhhc----cc-eeeee-ccccchhhhh
Q psy317 63 MTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS-PLHKAEFTPKYERKV----DT-KVDYT-GNRTQNLQQT 127 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~~~----~~-~v~~~-~~~~~~~~~~ 127 (137)
.+.-+|.|+.+|..++.+++.++++||+|||.. +||......++..+. +. .|+++ |+...++..-
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence 355688999999999999999999999999997 999776555555432 33 44453 4544444433
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.69 E-value=0.0062 Score=49.51 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHh
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV 82 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~ 82 (137)
..+.+.++++.+|+..+.+.++.++| |++||++||++++
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 34567788999999999999999999 9999999998764
No 138
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.65 E-value=0.00073 Score=57.46 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCcccCc---cCCCCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHh--HHHHH
Q psy317 43 GSCFISEILDTLGLQEHKTT---MTSNLSGGQKKRL----------SIALELVNNPP-IMFFDEPTSPLHKAE--FTPKY 106 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~---~~~~LSgGqkqrv----------~IArAL~~~P~-iLlLDEPtsgLD~~~--~~~i~ 106 (137)
.++|. +++..+|+.+..+. ....+|+||+|+. .+++++...|. ++++||+++.++... ...++
T Consensus 243 merR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l 321 (512)
T 2ius_A 243 MERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELI 321 (512)
T ss_dssp HHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHH
Confidence 44554 67888898765432 2346788887652 35666778898 899999999887432 22233
Q ss_pred Hh------hccceeeeeccccc
Q psy317 107 ER------KVDTKVDYTGNRTQ 122 (137)
Q Consensus 107 ~~------~~~~~v~~~~~~~~ 122 (137)
.+ ..|.+++++|++..
T Consensus 322 ~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 322 ARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHhhhCCcEEEEEecCCc
Confidence 22 22778899887765
No 139
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.59 E-value=0.07 Score=41.64 Aligned_cols=57 Identities=7% Similarity=0.023 Sum_probs=39.1
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHhHHHHHH
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP-TSPLHKAEFTPKYE 107 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEP-tsgLD~~~~~~i~~ 107 (137)
.+.+..|+.-..... ..+-.+.+|..|+.+...+++++|+||| +.++|......+..
T Consensus 147 ~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~ 204 (295)
T 1ls1_A 147 LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR 204 (295)
T ss_dssp HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH
Confidence 345556664332111 1233455788899988899999999999 99999876665544
No 140
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.57 E-value=0.0075 Score=50.18 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc------cceeeeeccc
Q psy317 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV------DTKVDYTGNR 120 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~------~~~v~~~~~~ 120 (137)
.++-.+ +.|+++|..++++|++|||+..|.+.+...+++.+. |..|++.|..
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 456555 789999999999999999999999998887766443 5677765543
No 141
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.64 E-value=0.042 Score=39.26 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
+...+|++++.+|+++++| ||++|.....++++.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 3467899999999999999 99999999999988654
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.87 E-value=0.13 Score=38.34 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=33.2
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cceeeeeccccchhh
Q psy317 78 ALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~~v~~~~~~~~~~~ 125 (137)
+..++..++++||| ||+..+.++++.+. +.+|++++|....+.
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELD 144 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHH
Confidence 44566678999999 99999999999775 568999555544443
No 143
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.2 Score=39.67 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=41.5
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHhHHHHHHhhc----cceeeeec
Q psy317 61 TTMTSNLSGGQKKRLSIALELVNNPPIMFFD-EPTSPLHKAEFTPKYERKV----DTKVDYTG 118 (137)
Q Consensus 61 ~~~~~~LSgGqkqrv~IArAL~~~P~iLlLD-EPtsgLD~~~~~~i~~~~~----~~~v~~~~ 118 (137)
+..+..+|+|++|.+. +.+...++-++++| +|.+++|......+++.+. +..+++..
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3456678999998776 55556777889999 9999999988777766543 55555433
No 144
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.81 E-value=0.0022 Score=52.99 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlL 90 (137)
+.|..+|+.... .+..||||++|| ||++|+.+|++..-
T Consensus 278 ~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 278 TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 357778987653 778999999999 99999999998763
No 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.51 E-value=0.0026 Score=45.60 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccc-cchhhh
Q psy317 68 SGGQKKRLSIAL------ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNR-TQNLQQ 126 (137)
Q Consensus 68 SgGqkqrv~IAr------AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~-~~~~~~ 126 (137)
|+|++|++.++. +++.+|+...+|+ ++|+..+.. ++.+. +.+|+.+||. ..++.+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~ 162 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLND 162 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHH
Confidence 788888888888 8999999888884 899887766 55332 4578887776 445544
No 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.34 E-value=0.47 Score=35.87 Aligned_cols=62 Identities=26% Similarity=0.185 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------hHHHHHHhhcc---------ceeeeeccccchhhhhh
Q psy317 68 SGGQKKRLSIALELVNNPPIMFFDEPTSPLHKA----------EFTPKYERKVD---------TKVDYTGNRTQNLQQTI 128 (137)
Q Consensus 68 SgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~----------~~~~i~~~~~~---------~~v~~~~~~~~~~~~~~ 128 (137)
+++++.+..++.+...+|.+|++||+.+.++.. ....++..+.+ ..|+.+|+..+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467788888888989999999999997765432 12233333221 23456778888887776
Q ss_pred c
Q psy317 129 R 129 (137)
Q Consensus 129 ~ 129 (137)
.
T Consensus 177 ~ 177 (297)
T 3b9p_A 177 L 177 (297)
T ss_dssp H
T ss_pred H
Confidence 5
No 147
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.27 E-value=0.36 Score=38.59 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcC--CCEEEEeCCCCCC----------CH----HhH--HHHHHhh------ccceeeeeccccchh
Q psy317 72 KKRLSIALELVNN--PPIMFFDEPTSPL----------HK----AEF--TPKYERK------VDTKVDYTGNRTQNL 124 (137)
Q Consensus 72 kqrv~IArAL~~~--P~iLlLDEPtsgL----------D~----~~~--~~i~~~~------~~~~v~~~~~~~~~~ 124 (137)
.+-+.++++++.. |+++|+|||++.+ |+ ..+ .+++..+ .+.+|++++|...++
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~ 201 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKI 201 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccccc
Confidence 3456778888755 9999999999988 32 111 1222322 277999988876544
No 148
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.57 E-value=0.041 Score=46.93 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.+.+|+|++|++..++....++.+|++||.-. |++.....+++.+.
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 46799999999999999999999999999888 89998888888665
No 149
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.28 E-value=0.088 Score=41.83 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=40.3
Q ss_pred cccCc-cCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317 58 EHKTT-MTSNLSGGQKKRLSIALELVN------NPPIMFFDEPTSPLHKAEFTPKYERKVD 111 (137)
Q Consensus 58 ~~~~~-~~~~LSgGqkqrv~IArAL~~------~P~iLlLDEPtsgLD~~~~~~i~~~~~~ 111 (137)
++.|. ....+|+|++|++..+++++. .|++++ +|++|......+++.+..
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 44553 335689999999999999987 688876 999999999988886653
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.19 E-value=0.64 Score=37.21 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy317 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD 98 (137)
+.||.++.+|+..|...+.+++++|.|+|...++
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 5899999999999999999999999999865443
No 151
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.13 E-value=0.19 Score=35.76 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 75 LSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 75 v~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
...|++++.+|+++++| ||++|......+++.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999998888654
No 152
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.86 E-value=0.0015 Score=50.65 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=41.2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHhHHHHHHhhc
Q psy317 59 HKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS------------PLHKAEFTPKYERKV 110 (137)
Q Consensus 59 ~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts------------gLD~~~~~~i~~~~~ 110 (137)
..++.+..|||||+||+.|++|+..+|++| |||+. --|...+..+++.+.
T Consensus 130 ~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 130 VVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 345667889999999999999999999985 99863 457888888888654
No 153
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=87.28 E-value=0.35 Score=38.85 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCccc----CccCCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 46 FISEILDTLGLQEHK----TTMTSNLSGGQKKRLSIA----LEL-VNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 46 ~~~~~L~~lgL~~~~----~~~~~~LSgGqkqrv~IA----rAL-~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.+.++++.+++.+.. ..++..+|+|+++++.++ +++ ..+|++ +|+|++|......+++.+.
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 456778887765432 445667888888888877 555 444454 7999999999998888665
No 154
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.05 E-value=0.061 Score=42.02 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCc-ccCccCCCCCHHHHHHHHHHH
Q psy317 44 SCFISEILDTLGLQE-HKTTMTSNLSGGQKKRLSIAL 79 (137)
Q Consensus 44 ~~~~~~~L~~lgL~~-~~~~~~~~LSgGqkqrv~IAr 79 (137)
..++.++++.++|.. ..++++..|||.++|+++|||
T Consensus 264 ~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 264 GCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp TCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999986 778999999999999999986
No 155
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.41 E-value=1.2 Score=35.25 Aligned_cols=48 Identities=15% Similarity=-0.052 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccceeeeecccc
Q psy317 73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRT 121 (137)
Q Consensus 73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~ 121 (137)
+.-.+++++..++.+++||.++ +.|.......+....+.++++.||.+
T Consensus 232 eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 232 EMKKIARVTKPNLVIFVGDALA-GNAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3445899999999999999555 56666655555555688888866654
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.13 E-value=2 Score=33.37 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHH
Q psy317 73 KRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106 (137)
Q Consensus 73 qrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~ 106 (137)
-+.+|+ .+.+|+++|+| |+|+|+.....+.
T Consensus 173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~ 202 (296)
T 2px0_A 173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYID 202 (296)
T ss_dssp HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHH
T ss_pred HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHH
Confidence 344454 45999999999 9999988765443
No 157
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.85 E-value=0.00094 Score=56.55 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-----cceeeeeccccchhhhh
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-----DTKVDYTGNRTQNLQQT 127 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-----~~~v~~~~~~~~~~~~~ 127 (137)
...+|+||+||.+++. + | |+|||+.....+++.+. +.++++ ...+|++.++
T Consensus 398 ~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~-~~~sH~l~ei 453 (511)
T 2oap_1 398 TMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIE-VSMPKKLEKM 453 (511)
T ss_dssp EEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEE-CSCCTHHHHH
T ss_pred EEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEE-cccHHHHHHH
Confidence 4568999998876641 1 7 99999987655444322 557764 1234555444
No 158
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=79.53 E-value=0.21 Score=37.64 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy317 43 GSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIM 88 (137)
Q Consensus 43 ~~~~~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iL 88 (137)
..++++++-+.+|. ...++.++.+|||..|+...+++|+..|+-+
T Consensus 51 ~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~~~ 95 (265)
T 1b9m_A 51 AWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYDLL 95 (265)
T ss_dssp HHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHHHH
Confidence 44567888888999 7889999999999999999999999887643
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=79.05 E-value=2 Score=31.83 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCC-----CCCHHhHHHHHH-hhccceeeeeccccch
Q psy317 72 KKRLSIALELV--NNPPIMFFDEPTS-----PLHKAEFTPKYE-RKVDTKVDYTGNRTQN 123 (137)
Q Consensus 72 kqrv~IArAL~--~~P~iLlLDEPts-----gLD~~~~~~i~~-~~~~~~v~~~~~~~~~ 123 (137)
++.+..++..+ .+.++|||||.+. -|+......++. +-....|++|++..+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 34455566666 5679999999875 366665554444 2336688898865543
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.62 E-value=0.0032 Score=48.65 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=31.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Q psy317 62 TMTSNLSGGQKKRLSIALELVNNPPI--MFFDEPTSPLHKA 100 (137)
Q Consensus 62 ~~~~~LSgGqkqrv~IArAL~~~P~i--LlLDEPtsgLD~~ 100 (137)
.+...+|+| ||+.|++++..+|++ +|+||.|+.+|..
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 206 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSL 206 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence 344457888 899999999999999 9999999999875
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=78.38 E-value=0.0068 Score=44.42 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=26.5
Q ss_pred cCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy317 63 MTSNLSGGQKKRLSIA-LELVNNPPIMFFDEPT 94 (137)
Q Consensus 63 ~~~~LSgGqkqrv~IA-rAL~~~P~iLlLDEPt 94 (137)
....+|+||+|+++++ ++++.++.++++|||.
T Consensus 108 ~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 108 RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 3456799999999998 8888888888888884
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.24 E-value=0.081 Score=41.60 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHHHHH
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIA 78 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IA 78 (137)
+...+..+++.. ..+++..||+|++||+.++
T Consensus 144 i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 144 IRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp -----CCCEEEE-EESCGGGSCHHHHTTCSEE
T ss_pred ccccCCCeEEEE-ecCCcccCCHHHHHhcCce
Confidence 344455566644 6677889999999998554
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.29 E-value=18 Score=27.65 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=27.9
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc--------cceeeeecccc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV--------DTKVDYTGNRT 121 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~--------~~~v~~~~~~~ 121 (137)
.+|.+|++||+... |......+...+. +..+++++|..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 56889999999876 8887777766542 45677777665
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.18 E-value=0.0041 Score=50.39 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPI--MFFDEPTSPLHKA 100 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~i--LlLDEPtsgLD~~ 100 (137)
.-.+|+| ||+.|++++..+|++ +|+||.|+.||..
T Consensus 281 l~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 281 LLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp EEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred eEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 3445888 889999999999999 9999999999854
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.60 E-value=0.043 Score=39.96 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 77 IAL-ELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 77 IAr-AL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.++ +++.+|.+++|||+|+++|..+.+.+.+++.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~ 150 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA 150 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 455 6788888999999999999888777766544
No 166
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.77 E-value=2.6 Score=32.74 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy317 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSP 96 (137)
Q Consensus 67 LSgGqkqrv~IArAL~~~P~iLlLDEPtsg 96 (137)
||.++.+|+..|...+.++++++.|+|...
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 899999999999999999999999998644
No 167
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.65 E-value=3.4 Score=32.77 Aligned_cols=51 Identities=8% Similarity=-0.078 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc-cc-eeeeeccccc
Q psy317 68 SGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV-DT-KVDYTGNRTQ 122 (137)
Q Consensus 68 SgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~-~~-~v~~~~~~~~ 122 (137)
+++..++-.|+.++..+|+.+++|||... ....+++.+. |. +++.++|...
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~----~~~~~l~~l~~g~~~~l~t~H~~~ 288 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRGG----EAYDFINVAASGHGGSITSCHAGS 288 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCST----HHHHHHHHHHTTCCSCEEEEECSS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchHH----HHHHHHHHHhcCCCeEEEEECCCC
Confidence 35667889999999999999999999862 2334555444 33 5667667643
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=71.18 E-value=5 Score=28.00 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
+|.+|++||.-. ++......++..+. +..++++|+....+..+...|
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH
Confidence 578999999754 77777777776654 345667777777666665544
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.37 E-value=5.1 Score=32.59 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=26.4
Q ss_pred cCCCEEEEeCCCCCCCH-HhHHHHHHhh-----ccceeeeeccc
Q psy317 83 NNPPIMFFDEPTSPLHK-AEFTPKYERK-----VDTKVDYTGNR 120 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~-~~~~~i~~~~-----~~~~v~~~~~~ 120 (137)
.+|++||+||+....+. ..+..++..+ .+..|+++|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 38999999999876653 4455555543 25678888765
No 170
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.88 E-value=9.3 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHhcCCCEEEEeCCCCC-CC---HH-hHHHHHHhhc-cceeeeeccccc
Q psy317 77 IALELVNNPPIMFFDEPTSP-LH---KA-EFTPKYERKV-DTKVDYTGNRTQ 122 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsg-LD---~~-~~~~i~~~~~-~~~v~~~~~~~~ 122 (137)
+..++..+|+++|+||+-.- .+ .. -.+.+.+.+. +..|+.|+|..|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh 128 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQH 128 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccc
Confidence 44445578999999997642 22 11 2223333222 557777777555
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.58 E-value=5.3 Score=30.41 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
+++++++|| ...+++.....+++.+. ...++++++..+.+-.+++.|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 456999999 78888887777776554 234557777777766666533
No 172
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=57.71 E-value=24 Score=26.68 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCC-------------CCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc
Q psy317 75 LSIALELVNNPPIMFFDEPTS-------------PLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 75 v~IArAL~~~P~iLlLDEPts-------------gLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~ 129 (137)
-.+..|....|.+|++||--+ +........++..+. +..|+.+||..+++..+..
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~ 172 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 172 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGG
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHh
Confidence 345556667899999999642 222223445555543 2356677799988888754
No 173
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=56.18 E-value=14 Score=27.46 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=25.3
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHhHHHHHHhhcc
Q psy317 76 SIALELVNNP-PIMFFDEPTSPLHKAEFTPKYERKVD 111 (137)
Q Consensus 76 ~IArAL~~~P-~iLlLDEPtsgLD~~~~~~i~~~~~~ 111 (137)
.+..++...| .+|++||. ..+++.....++..+..
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3555665555 79999997 67788888888776653
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=55.15 E-value=16 Score=25.10 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
.++.+|++||. ..++......+...+. +..++++++..+.+..+...|
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 57889999995 4566666665655443 335667777776666555433
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=52.36 E-value=19 Score=26.45 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCcc---cCccCCCCCHHHHH--HHHHHHHHhcCCCEEEEeCCCCC----------CCHHhHHHHHHhhc
Q psy317 46 FISEILDTLGLQEH---KTTMTSNLSGGQKK--RLSIALELVNNPPIMFFDEPTSP----------LHKAEFTPKYERKV 110 (137)
Q Consensus 46 ~~~~~L~~lgL~~~---~~~~~~~LSgGqkq--rv~IArAL~~~P~iLlLDEPtsg----------LD~~~~~~i~~~~~ 110 (137)
.+..+...++..-. .......+.|...+ +-.+..+-...|.+|++||.-.- -+......+...+.
T Consensus 67 la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 67 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 34445556554311 12223444444333 33445566678999999997432 13333344433322
Q ss_pred ---------cceeeeeccccchhhhhhc
Q psy317 111 ---------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 111 ---------~~~v~~~~~~~~~~~~~~~ 129 (137)
+..|+.+|+..+.+..+..
T Consensus 147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 147 EMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 2346677788888887765
No 176
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=49.45 E-value=0.88 Score=37.99 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=18.8
Q ss_pred HHHhcCCCEEEEeCCCCCCCHH
Q psy317 79 LELVNNPPIMFFDEPTSPLHKA 100 (137)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~ 100 (137)
|||..+ +|||+ ||++.+||.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~ 47 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD 47 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG
T ss_pred cccccC-cEEec-cCccCCCcc
Confidence 799999 99999 999999995
No 177
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.14 E-value=0.12 Score=39.20 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC------------CCCCHHhHHHHHHhh
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPT------------SPLHKAEFTPKYERK 109 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPt------------sgLD~~~~~~i~~~~ 109 (137)
+..||||++|++.|++|+..+|++ +|++. .-.|...+..+++..
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCEEEEEecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 456899999999999999999987 56653 234666666666643
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.02 E-value=41 Score=26.07 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEeCC-------CCCCCHHh---HHHHHHhhcc--------ceeeeeccccchhhhhhcC
Q psy317 74 RLSIALELVNNPPIMFFDEP-------TSPLHKAE---FTPKYERKVD--------TKVDYTGNRTQNLQQTIRN 130 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEP-------tsgLD~~~---~~~i~~~~~~--------~~v~~~~~~~~~~~~~~~~ 130 (137)
+-.+..+-...|.+|++||. ..+.+... ...++..+.+ ..|+.+|+..+++..+...
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 240 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 240 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh
Confidence 44455566678999999997 22222222 2234444332 2344577888888887763
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.64 E-value=15 Score=30.95 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=31.9
Q ss_pred HHHHHHHHHH-hcCC-CEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccc
Q psy317 72 KKRLSIALEL-VNNP-PIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNR 120 (137)
Q Consensus 72 kqrv~IArAL-~~~P-~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~ 120 (137)
+|++.+++++ ...| .+||...|++|.+......-+....+.+.++.||.
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcC
Confidence 4677788866 4457 46666669999877665555555556777765553
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=41.63 E-value=29 Score=26.34 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhcc----ceeeeeccccchhhhhhcCc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKVD----TKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~~----~~v~~~~~~~~~~~~~~~~~ 131 (137)
.+++++++||. ..|+......+...+.. ..++++++..+.+..++..|
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 169 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh
Confidence 45789999994 45777777777766653 24556677777666665544
No 181
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=41.09 E-value=0.12 Score=38.54 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHhHHHHHHhh
Q psy317 64 TSNLSGGQKKRLSIALELVNNPPIMFFDEPTS------------PLHKAEFTPKYERK 109 (137)
Q Consensus 64 ~~~LSgGqkqrv~IArAL~~~P~iLlLDEPts------------gLD~~~~~~i~~~~ 109 (137)
...||||++|++.|++|+..+|++ +|++.- -.|...+..+++..
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 456789999999999999999987 677653 34666777777643
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=40.28 E-value=0.41 Score=37.09 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHhhhhhhhHHhhhhcchhHHHHHHHHHHHcCCC-cccCccCCCCCHH
Q psy317 13 SMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQ-EHKTTMTSNLSGG 70 (137)
Q Consensus 13 ~l~~~lTv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSgG 70 (137)
.+|+++|+ +|+.++...+ ..+ ...++.++|+.+||. +..++++..||.=
T Consensus 246 ~l~~~~~~-~n~~~~~~~~------~~e--~~~~v~~~l~~~~L~~~~~~~~~~~lse~ 295 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDCNH------VDE--PECGVKEAVENGEIAESRYENYVKMFYEL 295 (301)
T ss_dssp GGSTTSSS-CCCSSTTCCS------SSC--SSCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccc-ccCcCCCCcC------CCC--CCcHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46888999 8887752111 112 345788999999995 6778888888863
No 183
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=40.22 E-value=19 Score=27.76 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCcc--cCc-c-CCCCCHH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HhH----HH
Q psy317 45 CFISEILDTLGLQEH--KTT-M-TSNLSGG-QKKRLSIALELV---NNPPIMFFDEPTSPLHK--------AEF----TP 104 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~--~~~-~-~~~LSgG-qkqrv~IArAL~---~~P~iLlLDEPtsgLD~--------~~~----~~ 104 (137)
+++.++++.+|+... .++ . ....+.. +.+.+..++.++ .+|+++++|+.++-... ..+ .+
T Consensus 156 ~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~ 235 (324)
T 2z43_A 156 ERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 (324)
T ss_dssp HHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHH
Confidence 445556677776421 111 1 1223333 235677777777 67999999999985532 121 23
Q ss_pred HHHhhc------cceeeeeccccchhh
Q psy317 105 KYERKV------DTKVDYTGNRTQNLQ 125 (137)
Q Consensus 105 i~~~~~------~~~v~~~~~~~~~~~ 125 (137)
++..+. +.+|+++.|...+..
T Consensus 236 ~l~~L~~la~~~~~~Vi~~nq~~~~~~ 262 (324)
T 2z43_A 236 HLHQLTRLAEVYDIAVIITNQVMARPD 262 (324)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEC-----
T ss_pred HHHHHHHHHHHhCCEEEEEcceeecCC
Confidence 333222 678998877665543
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.17 E-value=25 Score=26.55 Aligned_cols=38 Identities=8% Similarity=-0.035 Sum_probs=23.5
Q ss_pred CCCEEEEeCCCCCCC---HHhHHHHHHhh---c--cceeeeecccc
Q psy317 84 NPPIMFFDEPTSPLH---KAEFTPKYERK---V--DTKVDYTGNRT 121 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD---~~~~~~i~~~~---~--~~~v~~~~~~~ 121 (137)
.|.+|++||+....+ ......+.+.. . +..++++||..
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 488999999987653 33344454444 2 34667777655
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=37.81 E-value=14 Score=25.78 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCC-CCCHHhHH----HHHHh--hccceeeeecc-ccchhhh
Q psy317 82 VNNPPIMFFDEPTS-PLHKAEFT----PKYER--KVDTKVDYTGN-RTQNLQQ 126 (137)
Q Consensus 82 ~~~P~iLlLDEPts-gLD~~~~~----~i~~~--~~~~~v~~~~~-~~~~~~~ 126 (137)
+.++++|++||+-. .++...+. .+++. ..+..+++||+ ...++..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 34678999999932 23332222 23332 23567788775 4445544
No 186
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.14 E-value=90 Score=25.39 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCC----------CHHhHH---HHHHhhccc------eeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPTSPL----------HKAEFT---PKYERKVDT------KVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgL----------D~~~~~---~i~~~~~~~------~v~~~~~~~~~~~~~~~ 129 (137)
.+..|-...|-||++||-=+-. |..... +++..+-|. -|+.+||..+++..|+.
T Consensus 233 lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH
T ss_pred HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc
Confidence 4555666789999999976532 111121 333333322 46688899999999984
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.14 E-value=9 Score=26.96 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhh---ccceeeeeccccch
Q psy317 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERK---VDTKVDYTGNRTQN 123 (137)
Q Consensus 47 ~~~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~---~~~~v~~~~~~~~~ 123 (137)
+.++.+.+|.... .+.|+.+|..++..+..+|+.+... .+.++|..+..+.+.+ .+..|++.+|....
T Consensus 47 ~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e 117 (206)
T 1jjv_A 47 LSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIE 117 (206)
T ss_dssp HHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTT
T ss_pred HHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhh
Confidence 3445555554321 3678889999998888887654333 3455666666555544 24567775544322
Q ss_pred hh-hhhcCceEEec
Q psy317 124 LQ-QTIRNEVCLIS 136 (137)
Q Consensus 124 ~~-~~~~~~~~~~~ 136 (137)
.. ....|.+++|.
T Consensus 118 ~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 118 NKLTALCDRILVVD 131 (206)
T ss_dssp TTCGGGCSEEEEEE
T ss_pred cCcHhhCCEEEEEE
Confidence 22 11127777663
No 188
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=35.70 E-value=36 Score=28.89 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=39.2
Q ss_pred CCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHH--HHHHhhc---cceeeeecc
Q psy317 64 TSNLSGGQ-KKRLSIALELVNNPPIMFFDEPTSPLHKAEFT--PKYERKV---DTKVDYTGN 119 (137)
Q Consensus 64 ~~~LSgGq-kqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~--~i~~~~~---~~~v~~~~~ 119 (137)
.+.|+.+. ++...+.+.++.+|..++++.+++++|..... .+.+.+. +.||.+.|+
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 66666554 47778999999999999999999999987543 3334432 346666444
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=35.22 E-value=17 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCC-CCCCHHhHH----HHHHh--hccceeeeeccc-cchhhh
Q psy317 82 VNNPPIMFFDEPT-SPLHKAEFT----PKYER--KVDTKVDYTGNR-TQNLQQ 126 (137)
Q Consensus 82 ~~~P~iLlLDEPt-sgLD~~~~~----~i~~~--~~~~~v~~~~~~-~~~~~~ 126 (137)
+.++++|++||.- ..++...+. .+++. ..+..+++||+. ..++..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999982 234433332 23332 246678888864 334433
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.00 E-value=36 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=30.3
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------h----HHHHHHhh------ccceeeeeccccchhh
Q psy317 73 KRLSIALELV----NNPPIMFFDEPTSPLHKA--------E----FTPKYERK------VDTKVDYTGNRTQNLQ 125 (137)
Q Consensus 73 qrv~IArAL~----~~P~iLlLDEPtsgLD~~--------~----~~~i~~~~------~~~~v~~~~~~~~~~~ 125 (137)
+.+..++.++ .+++++++|+.++-.... . ..+++..+ .+.+|++++|...+..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 4455555665 679999999999865431 1 12333322 2678999888766553
No 191
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} PDB: 1em8_B* 3gli_O*
Probab=34.98 E-value=31 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHcCCCcccCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 49 ~~L~~lgL~~~~~~~~~~LSgGqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.+|+.+||....=++|.-|-| .++..|-.+.++||.+|.--..|.--...|+..+.
T Consensus 8 ~~LqeMGItqW~Lr~P~~L~g------~~~i~lp~~~rLliVs~~~p~~~~~L~~dVLrsl~ 63 (138)
T 3sxu_B 8 WQLQQLGITQWSLRRPGALQG------EIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 63 (138)
T ss_dssp --------------------------------CCTTCCEEEECSSCCCTTCHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEecCcccccC------CcccccCCceEEEEEeCCCCcccCHHHHHHHHHcC
Confidence 579999999998899999977 66777788999999998754444334445555433
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=34.38 E-value=34 Score=25.72 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCC-HHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 84 NPPIMFFDEPTSPLH-KAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD-~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
+++++++||.- .+. ......+...+. +..++++++..+.+..++..|
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 78999999974 343 444444544433 346668888888777776633
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.03 E-value=69 Score=26.46 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCC----------CHHhHH---HHHHhhcc------ceeeeeccccchhhhhhc
Q psy317 74 RLSIALELVNNPPIMFFDEPTSPL----------HKAEFT---PKYERKVD------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPtsgL----------D~~~~~---~i~~~~~~------~~v~~~~~~~~~~~~~~~ 129 (137)
|-.+..|-...|-||++||-=+-. +..... .++..+-| .-|+.+||..+++..|+.
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALl 339 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALI 339 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSS
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHh
Confidence 445566667789999999965422 212222 33333322 246688899999999985
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=32.82 E-value=99 Score=24.32 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHHh------------H----HHHHHhh------ccceeeeeccccchhh
Q psy317 73 KRLSIALELV--NNPPIMFFDEPTSPLHKAE------------F----TPKYERK------VDTKVDYTGNRTQNLQ 125 (137)
Q Consensus 73 qrv~IArAL~--~~P~iLlLDEPtsgLD~~~------------~----~~i~~~~------~~~~v~~~~~~~~~~~ 125 (137)
+...+++.++ .+++++++|.+++-..... + .+++..+ .+.+|++++|...++.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~ 204 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 204 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Confidence 4456666664 6899999999998764211 1 1223322 2678988887765543
No 195
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.03 E-value=1.5e+02 Score=24.22 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCcc---cCccCCCCCHHHH--HHHHHHHHHhcCCCEEEEeCCCCCC----------CHHhH---HHHHH
Q psy317 46 FISEILDTLGLQEH---KTTMTSNLSGGQK--KRLSIALELVNNPPIMFFDEPTSPL----------HKAEF---TPKYE 107 (137)
Q Consensus 46 ~~~~~L~~lgL~~~---~~~~~~~LSgGqk--qrv~IArAL~~~P~iLlLDEPtsgL----------D~~~~---~~i~~ 107 (137)
.+..+...+|..-. .....+.+.|.-- -|-.+..|-...|-||++||-=+-. |.... ..++.
T Consensus 231 lAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 231 LAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp HHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 34455566665311 1122333333322 3445566777899999999985422 22122 23444
Q ss_pred hhcc------ceeeeeccccchhhhhhc
Q psy317 108 RKVD------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 108 ~~~~------~~v~~~~~~~~~~~~~~~ 129 (137)
.+-| .-|+.+||..+.+..|+.
T Consensus 311 ~lDg~~~~~~vivI~ATNrp~~LDpAll 338 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMATNRPDTLDPALL 338 (437)
T ss_dssp HHHSSSCTTSSEEEEEESSTTSSCTTTT
T ss_pred HhhcccCCCCeEEEEecCCchhhCHHHh
Confidence 4432 256788999999999975
No 196
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.70 E-value=64 Score=23.90 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhcc----------------------ceeeeeccccchhhhhhcCc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKVD----------------------TKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~~----------------------~~v~~~~~~~~~~~~~~~~~ 131 (137)
.++.+|++||- ..++......++..+.. ..++.+|+..+.+..++..|
T Consensus 89 ~~~~~l~lDEi-~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 89 EEGDILFIDEI-HRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp CTTCEEEETTT-TSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred cCCCEEEEECC-cccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 57899999997 45666666666654442 23556667777666666544
No 197
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=30.81 E-value=1.6e+02 Score=22.15 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCC----------HHhHHHHHHhhcc-------ceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPTSPLH----------KAEFTPKYERKVD-------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD----------~~~~~~i~~~~~~-------~~v~~~~~~~~~~~~~~~ 129 (137)
.+..|-..+|.+|++||--+-.. ......++..+.+ .-|+.+|+..+++..|+.
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence 34455567899999999643211 1123344444332 234457799889988876
No 198
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.78 E-value=49 Score=23.82 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=30.2
Q ss_pred cCCCEEEEeCCCCC-------CCHHhHHHHHH--hhccceeeeeccccchhhhhhcCceE
Q psy317 83 NNPPIMFFDEPTSP-------LHKAEFTPKYE--RKVDTKVDYTGNRTQNLQQTIRNEVC 133 (137)
Q Consensus 83 ~~P~iLlLDEPtsg-------LD~~~~~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~ 133 (137)
....+||+||.=.- +........++ +..+..|++.|.....+..++++|+-
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVR 145 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEE
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhh
Confidence 34889999995332 21111111112 22366888888778888888886653
No 199
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=30.40 E-value=57 Score=24.05 Aligned_cols=37 Identities=11% Similarity=-0.045 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHh-hccceeeeecccc
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYER-KVDTKVDYTGNRT 121 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~-~~~~~v~~~~~~~ 121 (137)
+|+++++||--. |+....+.+... ..+..|+++++.+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEECCSB
T ss_pred CCCEEEEecCcc-CcHHHHHHHHHHHhCCCeEEEEeccc
Confidence 589999999964 665543333221 2378899988754
No 200
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.91 E-value=96 Score=23.73 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCHH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSGG-QKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT 112 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSgG-qkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~ 112 (137)
+.+-.++..+|.....--+.+.|+.- +-+-++=|+| . -.+ .=|||.|+|..+...|++...+.
T Consensus 148 etAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a--~-~g~--~lEPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 148 ETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACA--A-HDF--WLEPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHH--H-TTC--EEEEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHH--H-cCc--eECCCCCccHhhHHHHHHHHHHc
Confidence 45667899999987766666666543 4444433333 2 334 33999999999999999876644
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=29.29 E-value=61 Score=24.33 Aligned_cols=38 Identities=3% Similarity=0.058 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCC-CCHHhHHHHHHhh-----ccceeeeecc
Q psy317 82 VNNPPIMFFDEPTSP-LHKAEFTPKYERK-----VDTKVDYTGN 119 (137)
Q Consensus 82 ~~~P~iLlLDEPtsg-LD~~~~~~i~~~~-----~~~~v~~~~~ 119 (137)
..+|++|++||+-.- -+...+..++..+ .+..++++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 356999999998652 2334455554432 2456777774
No 202
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.07 E-value=1.4e+02 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=12.1
Q ss_pred ceeeeeccccchhhhhhc
Q psy317 112 TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 112 ~~v~~~~~~~~~~~~~~~ 129 (137)
.-|+.|||..+.+..|..
T Consensus 156 v~vI~ttN~~~~ld~al~ 173 (293)
T 3t15_A 156 VPIIVTGNDFSTLYAPLI 173 (293)
T ss_dssp CCEEEECSSCCC--CHHH
T ss_pred cEEEEecCCcccCCHHHh
Confidence 356688899988887764
No 203
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=28.71 E-value=1.4e+02 Score=21.17 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCC-----------CHHhH---HHHHHhhcc------ceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPTSPL-----------HKAEF---TPKYERKVD------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgL-----------D~~~~---~~i~~~~~~------~~v~~~~~~~~~~~~~~~ 129 (137)
.+..+....|.+|++||.-.-. +.... ..+++.+.+ ..++.+|+....+..+..
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~ 163 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALM 163 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGG
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHh
Confidence 3455556679999999985431 11111 233333322 245566688777776664
No 204
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=28.41 E-value=61 Score=23.87 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=29.6
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~ 129 (137)
.++.++++||. ..++......+...+. +..++++++..+.+-.++.
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 56899999995 4456666666655443 2355566777666655554
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.32 E-value=1.2e+02 Score=24.75 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHhH---HHHHHhhccc------eeeeeccccchhhhhhc
Q psy317 74 RLSIALELVNNPPIMFFDEPTS----------PLHKAEF---TPKYERKVDT------KVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPts----------gLD~~~~---~~i~~~~~~~------~v~~~~~~~~~~~~~~~ 129 (137)
|-.+..|-...|-||++||-=+ +=+.... ..++..+-|. -|+.+||..+++..|+.
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~All 338 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALL 338 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTC
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHh
Confidence 4445566677899999999532 1111111 1344444332 45678899999999983
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=28.25 E-value=1.2 Score=36.24 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=23.1
Q ss_pred CC--CEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 84 NP--PIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 84 ~P--~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
+| +++++|||++++|+......++.+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~ 167 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLR 167 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHH
Confidence 89 9999999999999999877766543
No 207
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=28.21 E-value=0.66 Score=37.59 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=31.1
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCCC
Q psy317 60 KTTMTSNLSGGQKKRLSIALELVNNPPIMF-FDEPTS 95 (137)
Q Consensus 60 ~~~~~~~LSgGqkqrv~IArAL~~~P~iLl-LDEPts 95 (137)
.+.....+++|+++|+..+++++..|++++ ||+|+.
T Consensus 276 ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 276 VTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 455677899999999998888899999988 999987
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=28.12 E-value=83 Score=25.91 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHhHHHHHHhhc------cceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPT----------SPLHKAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPt----------sgLD~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~ 129 (137)
.+..|--..|.+|++||-- +.+.......++..+. +..|+.+||...++..+++
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 3455666789999999961 1222233344554443 2244467788888887775
No 209
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=27.77 E-value=1e+02 Score=23.92 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCcccCccCCCCCH-HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhccc
Q psy317 45 CFISEILDTLGLQEHKTTMTSNLSG-GQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDT 112 (137)
Q Consensus 45 ~~~~~~L~~lgL~~~~~~~~~~LSg-Gqkqrv~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~~ 112 (137)
+.+-.++..+|.....--+.+.|+. -|-+-++=|+|= -.+ .=|||.|+|..+...|++...+.
T Consensus 171 etAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~---~g~--~lEPTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 171 KTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAE---EGF--ALEPTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp HHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHH---HTC--EEEEBSSCCTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHH---cCc--eECCCCCccHhHHHHHHHHHHHc
Confidence 4556788889998776666666554 344444444432 233 33999999999999999976644
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.72 E-value=1.1e+02 Score=24.82 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHhH---HHHHHhhcc------ceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPT----------SPLHKAEF---TPKYERKVD------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPt----------sgLD~~~~---~~i~~~~~~------~~v~~~~~~~~~~~~~~~ 129 (137)
.+..|-...|-|+++||-- ++-|.... .+++..+-| .-|+.+||..+.+..|+.
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~All 329 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL 329 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHH
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhh
Confidence 4555666789999999963 22232222 233333333 246688899999999985
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.31 E-value=1.4e+02 Score=24.73 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----------HHhHH---HHHHhhcc------ceeeeeccccchhhhhhc
Q psy317 74 RLSIALELVNNPPIMFFDEPTSPLH----------KAEFT---PKYERKVD------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPtsgLD----------~~~~~---~i~~~~~~------~~v~~~~~~~~~~~~~~~ 129 (137)
|-.+..|-...|-||++||--+-.. ..... .++..+-+ .-|+.+||..+.+..|+.
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl 366 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence 4556667778999999999876431 11121 23333322 245688899999999984
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=26.06 E-value=1.5e+02 Score=22.83 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCC----------HHhHHHHHHhhc-------cceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPTSPLH----------KAEFTPKYERKV-------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD----------~~~~~~i~~~~~-------~~~v~~~~~~~~~~~~~~~ 129 (137)
.+..|-...|.+|++||--+-.. ......++..+. +..|+.+|+..+.+..++.
T Consensus 135 ~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 34445557899999999653221 111233433332 2234457788888887776
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=25.61 E-value=49 Score=23.02 Aligned_cols=39 Identities=3% Similarity=0.066 Sum_probs=21.9
Q ss_pred hcCCCEEEEeCCCCCCCHHh--HHHHHHhh---c--cce-eeeecccc
Q psy317 82 VNNPPIMFFDEPTSPLHKAE--FTPKYERK---V--DTK-VDYTGNRT 121 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~--~~~i~~~~---~--~~~-v~~~~~~~ 121 (137)
+.+|.+|++||.-. ++... ...++..+ . +.. ++++++..
T Consensus 102 ~~~~~vliiDe~~~-~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 102 LEQFDLICIDDVDA-VAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSSEEEEETGGG-GTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred ccCCCEEEEecccc-ccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 36799999999644 33222 44444432 2 333 77777543
No 214
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.48 E-value=46 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=30.2
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhcc----ceeeeeccccchhhhhhcCc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKVD----TKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~~----~~v~~~~~~~~~~~~~~~~~ 131 (137)
.+++++++||. ..++......+...+.. ..++++++..+.+..++..|
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 56899999995 44566555555554442 24556677777666665533
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.37 E-value=77 Score=27.82 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----------HHhHHHHHHhhc------cceeeeeccccchhhhhhc
Q psy317 74 RLSIALELVNNPPIMFFDEPTSPLH----------KAEFTPKYERKV------DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 74 rv~IArAL~~~P~iLlLDEPtsgLD----------~~~~~~i~~~~~------~~~v~~~~~~~~~~~~~~~ 129 (137)
+..+..+....|.++++||+-..+. ......++..+. +..++.+||..+++..+.+
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 3345556677899999999955442 122233444333 2355577788888887775
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.61 E-value=22 Score=29.63 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=14.3
Q ss_pred eeeeeccccchhhhhhcCce
Q psy317 113 KVDYTGNRTQNLQQTIRNEV 132 (137)
Q Consensus 113 ~v~~~~~~~~~~~~~~~~~~ 132 (137)
.++.|++..+.+..++++|.
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~ 245 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRM 245 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHE
T ss_pred EEEeccCccccCCHHHHhhc
Confidence 34566688888888877655
No 217
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.25 E-value=1.8e+02 Score=21.80 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhcc---ceee
Q psy317 76 SIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVD---TKVD 115 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~---~~v~ 115 (137)
+-...+..+.+++++||+-..+.......+.+.+.. .+++
T Consensus 68 ~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~ 110 (343)
T 1jr3_D 68 CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLL 110 (343)
T ss_dssp HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEE
T ss_pred hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEE
Confidence 334567889999999999766776666667776663 4555
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=24.10 E-value=68 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHhc-CCCEEEEeCCCCCCCHHhHHHHHHhhc
Q psy317 79 LELVN-NPPIMFFDEPTSPLHKAEFTPKYERKV 110 (137)
Q Consensus 79 rAL~~-~P~iLlLDEPtsgLD~~~~~~i~~~~~ 110 (137)
.++-. .+.+|||||. ..+++.....++..+.
T Consensus 654 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEI-EKAHPDVFNILLQILD 685 (854)
T ss_dssp HHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHT
T ss_pred HHHHhCCCeEEEEecc-cccCHHHHHHHHHHhc
Confidence 34433 4589999999 5678887777777665
No 219
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=23.94 E-value=1.2e+02 Score=22.61 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=31.9
Q ss_pred hcCCCEEEEeCCCCCCCHHhHHHHHHhhcc----------------------ceeeeeccccchhhhhhcCc
Q psy317 82 VNNPPIMFFDEPTSPLHKAEFTPKYERKVD----------------------TKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~~~~----------------------~~v~~~~~~~~~~~~~~~~~ 131 (137)
..++.+|++||.- .+.+.....++..+.. ..++.+|+....+..++..|
T Consensus 104 ~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R 174 (338)
T 3pfi_A 104 LSEGDILFIDEIH-RLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR 174 (338)
T ss_dssp CCTTCEEEEETGG-GCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT
T ss_pred ccCCCEEEEechh-hcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh
Confidence 4688999999964 4556666666665443 23445667766666666655
No 220
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.58 E-value=1.6e+02 Score=23.52 Aligned_cols=53 Identities=26% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-------C---HHhHHHHHHhhcc-------ceeeeeccccchhhhhhc
Q psy317 77 IALELVNNPPIMFFDEPTSPL-------H---KAEFTPKYERKVD-------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsgL-------D---~~~~~~i~~~~~~-------~~v~~~~~~~~~~~~~~~ 129 (137)
+..+-...|.+|++||--+-. . ......++..+.+ ..|+.+|+..+.+..++.
T Consensus 220 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 289 (444)
T 2zan_A 220 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 289 (444)
T ss_dssp HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHH
T ss_pred HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHH
Confidence 344445789999999975431 1 1122234443322 345567799888888876
No 221
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=23.44 E-value=32 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHHhHH
Q psy317 66 NLSGGQKKRLSIALELVNNP--------------PIMFFDEPTS-PLHKAEFT 103 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~P--------------~iLlLDEPts-gLD~~~~~ 103 (137)
-+-+|..|+-.|.++|-.+. -.+++||.++ .|......
T Consensus 201 ~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~ 253 (289)
T 1ne7_A 201 ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVK 253 (289)
T ss_dssp EEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHH
T ss_pred EEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhh
Confidence 35577788888888887654 3899999998 67654443
No 222
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.33 E-value=1.4e+02 Score=18.53 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=26.6
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhh---ccceee-eecccc-chhhhhhc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERK---VDTKVD-YTGNRT-QNLQQTIR 129 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~---~~~~v~-~~~~~~-~~~~~~~~ 129 (137)
..|+++|+|--+.+.|-......+... ....|+ ++++.+ +....+..
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~ 112 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYS 112 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHH
Confidence 689999999888777654332222222 233444 555443 44455544
No 223
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=22.17 E-value=70 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhccceeeeeccccc
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQ 122 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~~~~v~~~~~~~~ 122 (137)
.++++++|=|-.|++......+. .+..+.|.|...+
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~l~---~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKMVQ---AYPRILYISCNPE 330 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHHHT---TSSEEEEEESCHH
T ss_pred CCCEEEECcCccccHHHHHHHHh---CCCEEEEEECCHH
Confidence 57999999999999876654442 5778888775554
No 224
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=22.16 E-value=1.4e+02 Score=23.06 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHhcCCCEEEEeCCCCC-------C---CHHhHHHHHHhhcc--------ceeeeeccccchhhhhhcCc
Q psy317 77 IALELVNNPPIMFFDEPTSP-------L---HKAEFTPKYERKVD--------TKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsg-------L---D~~~~~~i~~~~~~--------~~v~~~~~~~~~~~~~~~~~ 131 (137)
+..+-...|.+|++||-=.- . .......++..+.+ ..|+.+|+..+++..++..|
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R 272 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRR 272 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTT
T ss_pred HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcC
Confidence 34444568899999997321 1 11122233333321 23445678888888877643
No 225
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.72 E-value=1.6e+02 Score=22.38 Aligned_cols=54 Identities=28% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCC-------CCHH---hHHHHHHhhcc-------ceeeeeccccchhhhhhc
Q psy317 76 SIALELVNNPPIMFFDEPTSP-------LHKA---EFTPKYERKVD-------TKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 76 ~IArAL~~~P~iLlLDEPtsg-------LD~~---~~~~i~~~~~~-------~~v~~~~~~~~~~~~~~~ 129 (137)
.+..|-...|.+|++||.-+- .... ...+++..+.+ ..|+.+|+..+.+..|+.
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence 344555678999999997432 1111 12234443322 234467788888888875
No 226
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=21.38 E-value=1.6e+02 Score=21.26 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=12.8
Q ss_pred HHHHHhcCCCEEEEeCC
Q psy317 77 IALELVNNPPIMFFDEP 93 (137)
Q Consensus 77 IArAL~~~P~iLlLDEP 93 (137)
+..+...+|.+|++||.
T Consensus 117 ~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp HHHHHTSSEEEEEECCH
T ss_pred HHHHHhcCCcEEEEECh
Confidence 44455577999999994
No 227
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=21.30 E-value=91 Score=23.77 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=33.3
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhcc---c-eeeeeccccchhhhhhcCce
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKVD---T-KVDYTGNRTQNLQQTIRNEV 132 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~~---~-~v~~~~~~~~~~~~~~~~~~ 132 (137)
.+++++|+||. -.|.......++..+.. . .++++++..+.+-.+++.|.
T Consensus 107 ~~~kvviIdea-d~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 107 GGAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp SSCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred CCcEEEEECch-hhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 45799999996 45666666667776663 2 44477777777777777443
No 228
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=21.22 E-value=32 Score=25.69 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHH
Q psy317 65 SNLSGGQKKRLSIALELVNNP--------------PIMFFDEPTS-PLHKA 100 (137)
Q Consensus 65 ~~LSgGqkqrv~IArAL~~~P--------------~iLlLDEPts-gLD~~ 100 (137)
--+.+|..|.-.|.++|-.+. -++++||.++ .|+..
T Consensus 200 i~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 200 MILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp EEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred EEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 345678888888888887643 5799999998 56544
No 229
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.84 E-value=1.6e+02 Score=18.30 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=25.4
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhc
Q psy317 83 NNPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~ 129 (137)
..|+++|+|--+.+.|-.. +++.++ ...|++.|...+...++..
T Consensus 54 ~~~dlvi~d~~l~~~~g~~---~~~~l~~~~~~~~ii~~s~~~~~~~~~~~ 101 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDGVL---LAQNISQFAHKPFIVFITAWKEHAVEAFE 101 (143)
T ss_dssp CCCSEEEECSSCSSSCHHH---HHHHHTTSTTCCEEEEEESCCTTHHHHHH
T ss_pred CCCCEEEEecCCCCCCHHH---HHHHHHccCCCceEEEEeCCHHHHHHHHh
Confidence 6799999998776665433 333333 2335544433455555554
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.74 E-value=1.5e+02 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCEEEEeCCC-CC--CCHHhHHHHHH
Q psy317 75 LSIALELVNNPPIMFFDEPT-SP--LHKAEFTPKYE 107 (137)
Q Consensus 75 v~IArAL~~~P~iLlLDEPt-sg--LD~~~~~~i~~ 107 (137)
-.++.+...+++++|+|+|- .+ .|+....++..
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 34556666799999999996 34 66665554444
No 231
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=20.63 E-value=17 Score=27.56 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=28.3
Q ss_pred CCCcccC-ccCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCC
Q psy317 55 GLQEHKT-TMTSNLSGGQKKRLSIALELVNN-PPIMFFDEPTS 95 (137)
Q Consensus 55 gL~~~~~-~~~~~LSgGqkqrv~IArAL~~~-P~iLlLDEPts 95 (137)
+++...+ +++--+.+|..|--+|..||-.+ ...||.||.|+
T Consensus 217 ~l~~l~~~~~vI~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 259 (264)
T 2r5f_A 217 GLGKLRSINRVLGLAGGVRKVQAIKGALLGGYLDVLITDVGTA 259 (264)
T ss_dssp CHHHHHTSSEEEEECCCGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred CHHHHcCCCCEEEEEcCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 3444443 23445678888888888888766 58999999775
No 232
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.59 E-value=77 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHhhc----cceeeeeccccchhhhhhcCc
Q psy317 84 NPPIMFFDEPTSPLHKAEFTPKYERKV----DTKVDYTGNRTQNLQQTIRNE 131 (137)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~~~----~~~v~~~~~~~~~~~~~~~~~ 131 (137)
+++++++||. ..+.......+...+. +..++++++..+.+-.++..|
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 4899999995 3444554444444433 335557777766666665533
No 233
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=20.08 E-value=44 Score=24.25 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCCCCHHHH-HHHHHHHHHhcCC-------CEEEEeCCCCCC
Q psy317 64 TSNLSGGQK-KRLSIALELVNNP-------PIMFFDEPTSPL 97 (137)
Q Consensus 64 ~~~LSgGqk-qrv~IArAL~~~P-------~iLlLDEPtsgL 97 (137)
|..||.-++ +|+.+|..++... +|+..||-.-..
T Consensus 3 p~~Lt~~~k~~R~~~~~~ll~~~~~~~f~~~iv~~DE~~~~~ 44 (226)
T 3f2k_A 3 PHELTENQKNRRFEVSSSLILRNHNEPFLDRIVTCDEKWILY 44 (226)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHhhhcccchhHhEEEeccceEEE
Confidence 577888876 6999999887642 589999964433
No 234
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.07 E-value=1.7e+02 Score=22.47 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=40.1
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHhHHHHHHhhc--cceeeeeccccchhhhhhc
Q psy317 77 IALELVNNPPIMFFDEPTSPLHKAEFTPKYERKV--DTKVDYTGNRTQNLQQTIR 129 (137)
Q Consensus 77 IArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~~~--~~~v~~~~~~~~~~~~~~~ 129 (137)
|.-|-+...+.++| -.+.|+......+++... |..+++..|+..++..|..
T Consensus 119 I~eAr~~GADaILL--I~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~ 171 (258)
T 4a29_A 119 IDDAYNLGADTVLL--IVKILTERELESLLEYARSYGMEPLILINDENDLDIALR 171 (258)
T ss_dssp HHHHHHHTCSEEEE--EGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCCeeeh--HHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc
Confidence 45555667888887 568899888888887655 7788899999999988876
No 235
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=20.04 E-value=18 Score=27.41 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHhcC-CCEEEEeCCCC
Q psy317 66 NLSGGQKKRLSIALELVNN-PPIMFFDEPTS 95 (137)
Q Consensus 66 ~LSgGqkqrv~IArAL~~~-P~iLlLDEPts 95 (137)
-+.+|..|--+|..||-.+ ...||.||.|+
T Consensus 226 ~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 256 (266)
T 2gnp_A 226 AVAYGDTKVSSILSVLRANLVNHLITDKNTI 256 (266)
T ss_dssp EECCSGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EEecChhhHHHHHHHHhcCCCCEEEECHHHH
Confidence 3678888888888888766 58999999875
Done!