RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy317
(137 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 64.9 bits (159), Expect = 8e-14
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+ + GL E S S G ++L IA L+ NP + DEPTS
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 63.1 bits (154), Expect = 8e-13
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ +E+L LG+ + +LSGG+ +R++IA L+ + I DEP++ L
Sbjct: 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYL 502
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
E++ L L+ LSGG+ +R++IA L+ FFDEP+S
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 62.0 bits (151), Expect = 2e-12
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
F ++++ L + + +LSGG+ +R++I L L I DEP++ L
Sbjct: 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498
Score = 51.6 bits (124), Expect = 8e-09
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+ + L L+ LSGG+ +R +I + V + FDEP+S
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 61.2 bits (149), Expect = 4e-12
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ +E+L LG+ + + LSGG+ +R++IA L+ + I DEP++ L
Sbjct: 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432
Score = 49.6 bits (119), Expect = 4e-08
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E++ L L+ +LSGG+ +R++IA L+ N FFDEP+S L
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 59.8 bits (146), Expect = 4e-12
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
I + L+++ + + K + LS G +R+ +A L+ N I D+P
Sbjct: 115 IMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 60.4 bits (147), Expect = 7e-12
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 46 FISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
F E+ L L + ++LSGG+ ++L IA L + D+P+S L
Sbjct: 365 FFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL 416
Score = 51.2 bits (123), Expect = 1e-08
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+ + L + + LSGG +RL +A L+ + FD+P+S L
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYL 169
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 59.3 bits (144), Expect = 1e-11
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
++E+L +GL + + SNLSGGQK+R++IA L +NP ++ D+ TS L
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 58.4 bits (142), Expect = 2e-11
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+LD +GL++ +LSGGQ +R++IA L P IM FDEPTS L
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 57.2 bits (139), Expect = 7e-11
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
++L +G+ LS G+K+R+ IA L+ P ++ DEP +
Sbjct: 144 QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 55.6 bits (135), Expect = 2e-10
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---PLHKAE 101
+ L G++ K T LS GQKKR++IA LV P ++ DEPT+ P+ +E
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 55.2 bits (134), Expect = 3e-10
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 49 EILDTLGLQEHKTTMTSN-LSGGQKKRLSIALELVNNPPIMFFDEPT 94
E L L+E N LSGGQ++R++IA L NNPPI+ D+PT
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 54.4 bits (132), Expect = 4e-10
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
+L LGL + + LSGG+++R++IA L N P ++F DEPT
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPT 168
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 54.7 bits (132), Expect = 4e-10
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 47 ISEILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+L L L E LS GQ + +L L + P I+ DEP +
Sbjct: 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 54.5 bits (132), Expect = 5e-10
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+++R++IA L+ +P I+ FDE TS L
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 54.4 bits (132), Expect = 6e-10
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQ++R++IA LVNNP I+ FDE TS L
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 53.3 bits (129), Expect = 1e-09
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ L +G+ E + +LSGGQ++R+SIA L P ++ FDEPTS L
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 52.1 bits (126), Expect = 3e-09
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 16/59 (27%)
Query: 46 FISEI---LDTL----GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
F+ + L+T G++ +SGGQ++RL+IA + NP I+ DE T+ L
Sbjct: 121 FVENMPDQLNTEVGERGVK---------ISGGQRQRLAIARAFLRNPKILMLDEATASL 170
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 52.2 bits (126), Expect = 3e-09
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGG+K+R++IA ++ P I+ DE TS L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 51.8 bits (125), Expect = 4e-09
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LD L L ++LSGGQ++ + IA + + ++ DEPTS L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 51.4 bits (124), Expect = 1e-08
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
++LSGGQ++R++IA L+ + P++ DE TS L
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 51.2 bits (122), Expect = 1e-08
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 47 ISEILDTLGLQEHKTTMT--SNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
I E LGL + + LSGGQK +L +A P ++ DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Score = 50.4 bits (120), Expect = 2e-08
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 47 ISEILDTLGL-QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT 94
I + L G E S LSGG K +L++A ++ N I+ DEPT
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 50.7 bits (122), Expect = 1e-08
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
LSGGQK+RLSIA +NNPPI+ DE TS
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATS 506
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 50.7 bits (122), Expect = 2e-08
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA L+ + PI+ DE TS L
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEP 93
+IL+ L L LSGGQ K + I L+ NP ++ DEP
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 49.7 bits (119), Expect = 4e-08
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV NP I+ DE TS L
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Score = 49.3 bits (118), Expect = 5e-08
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LSGGQK+R++IA LV P I+ DE TS L
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 49.1 bits (118), Expect = 6e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
N SGGQK+RLSIA LV P ++ D+ TS +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510
Score = 27.1 bits (61), Expect = 1.9
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 24 MQISNGMMVLAAMFNQ-SQAGSCF--ISEILDT 53
MQI +M++ + N +A + + E+L+
Sbjct: 290 MQIMFSLMMIGNILNFIVRASASAKRVLEVLNE 322
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 48.4 bits (116), Expect = 1e-07
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
Query: 46 FISEI---LDTL----GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
FI +T+ G+ LSGGQK+R++IA L+ NP I+ DE TS L
Sbjct: 465 FIRNFPQGFNTVVGEKGVL---------LSGGQKQRIAIARALLKNPKILLLDEATSAL 514
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 48.0 bits (115), Expect = 1e-07
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 47 ISEILDTLGL--QEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS---PLHKAE 101
+ + ++ +GL K + LSGG+K+R++IA +V+ P I+ DEP K +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 102 F 102
Sbjct: 177 L 177
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 47.9 bits (115), Expect = 1e-07
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 16/59 (27%)
Query: 46 FISEI---LDTL----GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
FIS DT G Q LSGGQ++ +++A L+ P ++ D TS L
Sbjct: 138 FISGFPQGYDTEVGETGNQ---------LSGGQRQAVALARALIRKPRLLILDNATSAL 187
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 47.2 bits (113), Expect = 2e-07
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E+ + LG+ + LSGG+++R+++A LV P ++ DEP S +
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 46.4 bits (111), Expect = 4e-07
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ + L ++ LSGG+++R+++A LV NP I+ DEP S L
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 44.5 bits (106), Expect = 2e-06
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ E+L + L+ + LSGGQ++R+++A L P ++ FDEP + +
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 43.3 bits (103), Expect = 5e-06
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
I +L+ G+ E LSGGQ++R ++A L +P ++ DEP S L
Sbjct: 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 43.1 bits (101), Expect = 7e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL------VNNPPIMFFDEPTSPLH 98
+ + E K + LSGG++ L +A L ++ DEPT L
Sbjct: 231 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 286
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+LS GQ++ L+I + NP I+ DE TS
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATS 520
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 40.5 bits (95), Expect = 5e-05
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKV 114
L LS G K+ + +A +++ I+ DEP++ +D
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSA-------------HLDPVT 190
Query: 115 DYTGNRTQNLQQTIRNE 131
Q +++T++
Sbjct: 191 Y------QIIRRTLKQA 201
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 40.3 bits (95), Expect = 6e-05
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
E+ L + LSG Q++R+++A LV +P ++ DEP S L
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 40.2 bits (95), Expect = 6e-05
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELV-------NNPPIMFFDEPTSPL 97
++++ L L + T+ LSGG+ +R+ +A ++ ++ DEP + L
Sbjct: 107 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_B* 1us8_B*
Length = 148
Score = 38.6 bits (90), Expect = 1e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 51 LDTLGLQEHKTTMTSNLSGGQKKRLSIALEL------VNNPPIMFFDEPTSPLH 98
+ G + T LSGG++ L +A L ++ DEPT L
Sbjct: 46 VVWEGKERPLTF----LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 5e-04
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 42/135 (31%)
Query: 1 MNPDSLESS-----IWDSMDPKKTPLTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLG 55
M D ++S +W+ D + + G F+ I +I+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD------NHFKDTYG-------FS--------ILDIV---- 1665
Query: 56 LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKYERKVDTKVD 115
+ +T GG+K + + N M F+ K E K + T
Sbjct: 1666 -INNPVNLTI-HFGGEKGK-----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 116 YTG-----NRTQNLQ 125
+ + TQ Q
Sbjct: 1719 FRSEKGLLSATQFTQ 1733
Score = 27.3 bits (60), Expect = 2.3
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 91 DEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEV 132
DEPT+P AE K+ + Y + + + ++V
Sbjct: 52 DEPTTP---AELVGKF-------LGYVSSLVEPSKVGQFDQV 83
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 37.5 bits (88), Expect = 5e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
NLSGGQK+R+S+A + +N I FD+P S
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLS 156
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
LSGGQ+ R+S+A + + + D P
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFG 159
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 36.6 bits (85), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 66 NLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
LSGGQ+ R+S+A + + + D P
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFG 188
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 35.3 bits (82), Expect = 0.003
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++IA LV P ++ DEP S L
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL 164
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 34.9 bits (81), Expect = 0.005
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R+++A LV P ++ FDEP S L
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 34.9 bits (81), Expect = 0.005
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ L ++E + LSGGQ++R+++A +V P ++ DEP S L
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 34.5 bits (80), Expect = 0.005
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 52 DTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ LGL E LSGGQ++R+++ +V P + DEP S L
Sbjct: 125 ELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.1 bits (73), Expect = 0.035
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALEL-------VNNPPIMFFDEPTSPL 97
+++ + + NLSGG++ ++++L L N + DEPT L
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYL 318
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 32.1 bits (74), Expect = 0.038
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 67 LSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ++R++I LV P + DEP S L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 29.0 bits (66), Expect = 0.37
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 56 LQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPT---SPL 97
L+E + LSGG+++ L+I L++ P ++ DEP+ +P+
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.5 bits (61), Expect = 1.4
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 37 FNQSQAGSCFISEILDTLGLQEHKTTM---TSNLSGGQKKRLSIALEL----VNNPPI-- 87
+ G I + G + LSGG++ +SI+L + V + +
Sbjct: 247 LDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDA 306
Query: 88 MFFDEPTSPL 97
F DE S L
Sbjct: 307 FFIDEGFSSL 316
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial,
cytokine, developm protein, fungicide, glycoprotein,
secreted; 2.40A {Drosophila melanogaster}
Length = 114
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 91 DEPTSPLHKAEFTPKYERKVDTKVDYTGNRTQNLQQTIRNEVCL 134
+ + PK + D N +Q I+ E C
Sbjct: 6 ERFLCRSIRKLVYPKKGLRADDTWQLIVN-NDEYKQAIQIEECE 48
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 27.0 bits (59), Expect = 2.2
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 85 PPIMFFDEPTSPLHKAEFTPKYERKVDTKVDYTGNRT 121
P +M F P L K K Y+G RT
Sbjct: 93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGART 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.367
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,873,935
Number of extensions: 94915
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 67
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)